Query 047447
Match_columns 150
No_of_seqs 132 out of 1344
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 19:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 9.3E-22 3.2E-26 138.8 12.3 144 2-147 103-271 (328)
2 4fcg_A Uncharacterized protein 99.9 5.3E-21 1.8E-25 135.0 12.6 146 2-149 80-249 (328)
3 1p9a_G Platelet glycoprotein I 99.8 5.8E-20 2E-24 127.7 14.3 145 4-149 32-191 (290)
4 3rgz_A Protein brassinosteroid 99.8 1.9E-20 6.5E-25 144.9 11.9 89 59-147 631-722 (768)
5 3rgz_A Protein brassinosteroid 99.8 3E-20 1E-24 143.7 12.1 66 84-149 632-700 (768)
6 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-19 6.1E-24 124.6 14.5 145 2-146 55-217 (285)
7 1ogq_A PGIP-2, polygalacturona 99.8 1.9E-20 6.6E-25 131.3 8.6 146 2-147 100-286 (313)
8 3m19_A Variable lymphocyte rec 99.8 3.7E-19 1.3E-23 121.1 14.2 105 39-143 86-192 (251)
9 2o6q_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 121.1 15.4 144 4-147 38-198 (270)
10 1ogq_A PGIP-2, polygalacturona 99.8 2.8E-20 9.6E-25 130.5 8.6 141 1-142 74-233 (313)
11 1p9a_G Platelet glycoprotein I 99.8 5E-19 1.7E-23 123.0 14.4 142 1-143 53-208 (290)
12 3m19_A Variable lymphocyte rec 99.8 6.7E-19 2.3E-23 119.8 14.4 143 4-147 15-172 (251)
13 2o6q_A Variable lymphocyte rec 99.8 1E-18 3.4E-23 120.1 14.6 142 1-143 59-218 (270)
14 3rfs_A Internalin B, repeat mo 99.8 9.6E-19 3.3E-23 120.4 14.4 141 2-143 62-218 (272)
15 4ezg_A Putative uncharacterize 99.8 1.8E-19 6.2E-24 118.6 10.1 138 2-143 43-194 (197)
16 1wwl_A Monocyte differentiatio 99.8 3.8E-19 1.3E-23 124.6 11.6 148 2-149 94-272 (312)
17 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-18 4.8E-23 116.2 12.8 137 6-143 14-166 (220)
18 2ell_A Acidic leucine-rich nuc 99.8 1.5E-18 5E-23 111.4 12.2 135 2-148 23-165 (168)
19 1ozn_A Reticulon 4 receptor; N 99.8 2.7E-18 9.1E-23 118.7 14.3 147 3-149 32-197 (285)
20 3rfs_A Internalin B, repeat mo 99.8 2.7E-18 9.1E-23 118.2 14.0 146 2-148 40-199 (272)
21 3oja_A Leucine-rich immune mol 99.8 3.3E-19 1.1E-23 131.8 9.6 110 39-149 123-233 (487)
22 3e6j_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 114.8 13.7 137 6-143 22-172 (229)
23 1xku_A Decorin; proteoglycan, 99.8 5.2E-18 1.8E-22 119.5 14.9 70 78-147 210-280 (330)
24 3o53_A Protein LRIM1, AGAP0063 99.8 4.5E-19 1.6E-23 124.4 9.3 110 39-149 123-233 (317)
25 3e6j_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 114.7 12.8 122 26-147 24-152 (229)
26 2z7x_B TOLL-like receptor 1, v 99.8 2.8E-18 9.6E-23 127.3 13.1 140 2-143 323-481 (520)
27 2v9t_B SLIT homolog 2 protein 99.8 4.4E-18 1.5E-22 113.8 12.7 137 6-143 14-165 (220)
28 2z66_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 121.1 10.6 105 39-143 129-236 (306)
29 4eco_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 129.9 13.4 145 3-149 402-585 (636)
30 4ecn_A Leucine-rich repeat pro 99.8 3E-19 1E-23 139.4 7.8 9 2-10 346-354 (876)
31 3v47_A TOLL-like receptor 5B a 99.8 2E-18 6.9E-23 126.1 11.7 108 39-146 302-412 (455)
32 3vq2_A TLR4, TOLL-like recepto 99.8 8.2E-19 2.8E-23 132.2 9.8 110 39-148 427-539 (606)
33 2ft3_A Biglycan; proteoglycan, 99.8 7.7E-18 2.6E-22 118.7 14.2 86 62-147 195-281 (332)
34 2z66_A Variable lymphocyte rec 99.8 9.7E-19 3.3E-23 122.0 9.5 122 26-147 83-216 (306)
35 2z62_A TOLL-like receptor 4, v 99.8 3.6E-18 1.2E-22 117.6 11.9 59 39-97 103-162 (276)
36 4eco_A Uncharacterized protein 99.8 6.4E-19 2.2E-23 133.9 8.8 146 1-148 247-421 (636)
37 1xku_A Decorin; proteoglycan, 99.8 1.1E-17 3.6E-22 117.9 14.2 65 85-149 193-259 (330)
38 3zyi_A Leucine-rich repeat-con 99.8 8.6E-18 2.9E-22 123.0 14.0 108 39-148 174-284 (452)
39 3v47_A TOLL-like receptor 5B a 99.8 7.5E-18 2.6E-22 123.1 13.5 110 39-148 278-389 (455)
40 2xwt_C Thyrotropin receptor; s 99.8 3.1E-18 1.1E-22 115.6 10.7 145 2-148 54-223 (239)
41 4glp_A Monocyte differentiatio 99.8 1.4E-18 4.8E-23 121.6 9.0 147 3-149 91-270 (310)
42 2xot_A Amphoterin-induced prot 99.8 7.6E-18 2.6E-22 120.2 12.8 141 6-147 21-180 (361)
43 3zyj_A Leucine-rich repeat-con 99.8 1.3E-17 4.4E-22 121.7 14.1 108 39-148 163-273 (440)
44 2v9t_B SLIT homolog 2 protein 99.8 7.7E-18 2.6E-22 112.6 11.7 123 26-148 16-146 (220)
45 2z62_A TOLL-like receptor 4, v 99.8 3.9E-18 1.3E-22 117.4 10.5 120 4-123 29-165 (276)
46 3o6n_A APL1; leucine-rich repe 99.8 4.5E-18 1.6E-22 122.2 11.0 119 26-146 210-334 (390)
47 3zyj_A Leucine-rich repeat-con 99.8 8.3E-18 2.8E-22 122.7 12.5 144 2-146 87-247 (440)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.1E-18 3.1E-22 125.8 13.0 140 2-143 352-510 (562)
49 2id5_A Lingo-1, leucine rich r 99.8 1.4E-17 4.8E-22 122.4 13.4 139 2-140 55-210 (477)
50 4ecn_A Leucine-rich repeat pro 99.8 1.1E-18 3.9E-23 136.2 7.7 144 2-147 447-636 (876)
51 3oja_B Anopheles plasmodium-re 99.8 1.6E-17 5.6E-22 125.3 13.8 94 2-95 74-182 (597)
52 3o6n_A APL1; leucine-rich repe 99.8 1.7E-17 5.9E-22 119.2 13.3 64 84-147 248-312 (390)
53 4g8a_A TOLL-like receptor 4; l 99.8 7.6E-18 2.6E-22 127.0 11.8 131 16-146 43-189 (635)
54 3oja_B Anopheles plasmodium-re 99.8 1.4E-17 4.8E-22 125.7 13.2 146 2-147 98-318 (597)
55 1ziw_A TOLL-like receptor 3; i 99.8 2.7E-17 9.3E-22 125.5 14.3 146 2-147 404-577 (680)
56 2ft3_A Biglycan; proteoglycan, 99.8 2.8E-17 9.7E-22 115.8 13.3 142 2-143 146-307 (332)
57 1h6u_A Internalin H; cell adhe 99.7 3.4E-17 1.2E-21 114.5 13.5 137 2-146 62-211 (308)
58 2o6s_A Variable lymphocyte rec 99.7 8.2E-17 2.8E-21 106.5 14.7 105 39-143 55-161 (208)
59 3zyi_A Leucine-rich repeat-con 99.7 2.7E-17 9.1E-22 120.4 13.4 106 39-145 150-257 (452)
60 3o53_A Protein LRIM1, AGAP0063 99.7 1E-17 3.5E-22 117.5 10.8 139 3-143 99-250 (317)
61 1wwl_A Monocyte differentiatio 99.7 4.3E-18 1.5E-22 119.2 8.7 143 2-147 120-291 (312)
62 1h6t_A Internalin B; cell adhe 99.7 2E-17 6.8E-22 114.9 11.8 112 26-143 95-213 (291)
63 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-17 8.5E-22 110.2 11.6 124 26-149 16-149 (220)
64 1w8a_A SLIT protein; signaling 99.7 1.7E-17 6E-22 108.7 10.6 126 6-143 11-139 (192)
65 2z80_A TOLL-like receptor 2, v 99.7 3.9E-18 1.3E-22 121.2 7.5 23 126-148 273-295 (353)
66 3oja_A Leucine-rich immune mol 99.7 1.8E-17 6.1E-22 122.6 10.9 139 3-143 99-250 (487)
67 3vq2_A TLR4, TOLL-like recepto 99.7 1.8E-17 6.2E-22 124.9 10.9 120 26-145 37-168 (606)
68 3t6q_A CD180 antigen; protein- 99.7 6.4E-17 2.2E-21 122.0 13.3 107 39-146 428-539 (606)
69 2z63_A TOLL-like receptor 4, v 99.7 1.5E-17 5.1E-22 124.4 9.4 107 39-145 399-509 (570)
70 2wfh_A SLIT homolog 2 protein 99.7 6.2E-17 2.1E-21 106.2 11.3 104 39-143 34-139 (193)
71 2id5_A Lingo-1, leucine rich r 99.7 3.1E-17 1.1E-21 120.6 10.8 146 2-147 127-313 (477)
72 1h6u_A Internalin H; cell adhe 99.7 4.6E-17 1.6E-21 113.9 11.0 140 1-147 83-234 (308)
73 2z63_A TOLL-like receptor 4, v 99.7 2.5E-17 8.5E-22 123.2 10.0 145 2-146 372-535 (570)
74 4glp_A Monocyte differentiatio 99.7 1.9E-17 6.5E-22 115.8 8.5 84 57-143 221-307 (310)
75 2xwt_C Thyrotropin receptor; s 99.7 3.8E-17 1.3E-21 110.3 9.5 142 3-147 31-197 (239)
76 3t6q_A CD180 antigen; protein- 99.7 8E-17 2.7E-21 121.4 12.2 105 39-143 403-513 (606)
77 2je0_A Acidic leucine-rich nuc 99.7 4.8E-17 1.6E-21 102.4 8.9 124 3-138 17-148 (149)
78 2o6s_A Variable lymphocyte rec 99.7 3.1E-16 1E-20 103.8 12.8 110 39-148 31-142 (208)
79 1h6t_A Internalin B; cell adhe 99.7 1.9E-16 6.5E-21 110.0 12.2 139 2-147 45-195 (291)
80 2z7x_B TOLL-like receptor 1, v 99.7 8.5E-17 2.9E-21 119.4 10.5 108 39-148 351-462 (520)
81 4g8a_A TOLL-like receptor 4; l 99.7 9.5E-17 3.2E-21 121.0 10.7 143 4-147 53-218 (635)
82 2o6r_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 101.2 11.9 106 39-144 31-138 (177)
83 2z80_A TOLL-like receptor 2, v 99.7 1.5E-16 5E-21 113.1 11.0 106 39-144 103-212 (353)
84 1ziw_A TOLL-like receptor 3; i 99.7 4E-16 1.4E-20 119.1 13.9 145 2-146 429-600 (680)
85 1dce_A Protein (RAB geranylger 99.7 3.2E-18 1.1E-22 128.6 2.2 106 39-148 444-551 (567)
86 1m9s_A Internalin B; cell inva 99.7 3.2E-16 1.1E-20 118.5 13.0 139 2-146 64-213 (605)
87 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5E-21 113.6 10.7 123 26-148 23-154 (361)
88 3cvr_A Invasion plasmid antige 99.7 5.6E-16 1.9E-20 116.4 14.2 129 4-147 60-197 (571)
89 2z81_A CD282 antigen, TOLL-lik 99.7 5.1E-17 1.7E-21 121.2 8.0 124 3-126 26-168 (549)
90 4b8c_D Glucose-repressible alc 99.7 7E-17 2.4E-21 124.4 8.5 104 39-144 227-330 (727)
91 3cvr_A Invasion plasmid antige 99.7 5.1E-16 1.7E-20 116.6 12.3 129 2-143 99-243 (571)
92 1xeu_A Internalin C; cellular 99.7 4.2E-16 1.4E-20 106.8 10.5 137 2-146 40-188 (263)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 7.8E-16 2.7E-20 115.4 12.8 143 4-148 332-491 (562)
94 4fmz_A Internalin; leucine ric 99.7 9.7E-16 3.3E-20 108.4 12.5 103 39-146 224-327 (347)
95 1o6v_A Internalin A; bacterial 99.7 8.8E-16 3E-20 112.8 12.5 117 26-148 270-393 (466)
96 4fmz_A Internalin; leucine ric 99.7 1.2E-15 4.2E-20 107.8 12.6 137 2-143 198-346 (347)
97 2z81_A CD282 antigen, TOLL-lik 99.7 4.3E-16 1.5E-20 116.2 10.6 146 3-149 5-168 (549)
98 1a9n_A U2A', U2A'; complex (nu 99.7 2.9E-16 1E-20 101.4 8.4 127 2-142 18-152 (176)
99 3j0a_A TOLL-like receptor 5; m 99.7 6E-16 2.1E-20 120.9 11.4 83 39-121 76-162 (844)
100 2je0_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 98.6 8.0 107 39-147 20-130 (149)
101 1o6v_A Internalin A; bacterial 99.7 2.2E-15 7.7E-20 110.6 13.4 78 39-121 246-323 (466)
102 1jl5_A Outer protein YOPM; leu 99.7 2.9E-15 9.9E-20 109.9 13.9 136 3-147 91-254 (454)
103 4ezg_A Putative uncharacterize 99.7 9.8E-16 3.4E-20 100.7 10.2 118 26-146 49-175 (197)
104 2r9u_A Variable lymphocyte rec 99.7 1.4E-15 4.9E-20 98.2 10.5 106 39-147 15-122 (174)
105 2ell_A Acidic leucine-rich nuc 99.7 6.9E-16 2.4E-20 98.9 8.8 107 39-147 27-137 (168)
106 4ay9_X Follicle-stimulating ho 99.6 7.2E-16 2.5E-20 109.5 9.6 70 79-148 148-220 (350)
107 1m9s_A Internalin B; cell inva 99.6 1.8E-15 6.2E-20 114.4 12.0 139 2-147 42-192 (605)
108 3j0a_A TOLL-like receptor 5; m 99.6 2E-15 6.9E-20 117.9 12.5 147 1-147 46-222 (844)
109 3bz5_A Internalin-J, INLJ; leu 99.6 1.1E-14 3.9E-19 106.8 14.9 99 39-146 151-249 (457)
110 3g39_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 96.0 10.4 102 40-144 13-116 (170)
111 1jl5_A Outer protein YOPM; leu 99.6 8.3E-15 2.9E-19 107.5 13.4 135 4-148 72-213 (454)
112 3g06_A SSPH2 (leucine-rich rep 99.6 8E-15 2.7E-19 111.2 12.9 35 108-142 262-296 (622)
113 3g06_A SSPH2 (leucine-rich rep 99.6 9.7E-15 3.3E-19 110.7 13.3 61 83-149 220-280 (622)
114 3bz5_A Internalin-J, INLJ; leu 99.6 2.5E-14 8.4E-19 105.1 14.3 135 2-146 63-228 (457)
115 1w8a_A SLIT protein; signaling 99.6 5.4E-15 1.8E-19 96.8 9.7 110 3-121 29-140 (192)
116 2wfh_A SLIT homolog 2 protein 99.6 8.8E-15 3E-19 95.9 10.6 114 6-120 13-139 (193)
117 1xeu_A Internalin C; cellular 99.6 4.6E-15 1.6E-19 101.6 9.1 134 4-145 20-165 (263)
118 4b8c_D Glucose-repressible alc 99.6 6.4E-15 2.2E-19 113.5 8.9 138 5-150 175-313 (727)
119 1dce_A Protein (RAB geranylger 99.6 1.1E-15 3.7E-20 114.9 4.4 96 39-137 466-567 (567)
120 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.1E-19 93.4 7.2 105 39-147 22-130 (176)
121 2o6r_A Variable lymphocyte rec 99.5 1.8E-13 6.3E-18 88.2 11.6 107 39-148 10-118 (177)
122 2ca6_A RAN GTPase-activating p 99.5 5.1E-15 1.7E-19 106.3 4.7 144 2-145 121-318 (386)
123 2r9u_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 89.9 9.4 86 39-124 36-122 (174)
124 3g39_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 89.8 9.1 83 39-121 33-116 (170)
125 2ast_B S-phase kinase-associat 99.5 3.5E-15 1.2E-19 105.1 2.5 102 39-140 145-257 (336)
126 2ca6_A RAN GTPase-activating p 99.5 5.4E-15 1.9E-19 106.1 2.3 39 104-142 213-256 (386)
127 2ast_B S-phase kinase-associat 99.5 6.2E-15 2.1E-19 103.8 2.4 141 3-143 70-236 (336)
128 2ifg_A High affinity nerve gro 99.5 3E-13 1E-17 95.8 10.7 102 40-143 12-116 (347)
129 3goz_A Leucine-rich repeat-con 99.5 4.8E-14 1.6E-18 100.5 5.4 84 61-144 139-239 (362)
130 1ds9_A Outer arm dynein; leuci 99.5 1.1E-15 3.8E-20 100.5 -3.2 116 3-121 18-154 (198)
131 3goz_A Leucine-rich repeat-con 99.4 1.2E-13 4E-18 98.5 4.9 142 3-144 22-210 (362)
132 4ay9_X Follicle-stimulating ho 99.4 1.7E-12 5.9E-17 92.1 9.9 95 53-147 97-195 (350)
133 1z7x_W Ribonuclease inhibitor; 99.4 7.5E-14 2.6E-18 102.0 1.5 84 60-143 313-411 (461)
134 1z7x_W Ribonuclease inhibitor; 99.3 3.3E-13 1.1E-17 98.6 3.4 13 4-16 86-98 (461)
135 1ds9_A Outer arm dynein; leuci 99.3 1E-14 3.4E-19 95.9 -5.6 101 39-143 51-153 (198)
136 3un9_A NLR family member X1; l 99.3 1E-12 3.4E-17 94.2 1.4 141 3-143 72-252 (372)
137 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.2E-16 85.7 8.5 83 39-121 34-117 (347)
138 3sb4_A Hypothetical leucine ri 99.1 9.6E-10 3.3E-14 77.3 10.0 87 59-147 225-314 (329)
139 3ogk_B Coronatine-insensitive 99.0 3.8E-10 1.3E-14 84.7 5.7 62 76-138 285-350 (592)
140 3ogk_B Coronatine-insensitive 99.0 1.8E-10 6.2E-15 86.5 3.2 77 39-115 167-251 (592)
141 3sb4_A Hypothetical leucine ri 99.0 6.3E-09 2.2E-13 73.1 10.2 97 39-137 229-328 (329)
142 3un9_A NLR family member X1; l 98.9 2.1E-10 7.3E-15 82.2 1.2 119 3-121 101-253 (372)
143 4fdw_A Leucine rich hypothetic 98.7 3.7E-07 1.3E-11 66.0 12.5 92 53-147 264-362 (401)
144 2p1m_B Transport inhibitor res 98.7 3.4E-09 1.2E-13 79.6 1.9 17 2-18 65-81 (594)
145 1io0_A Tropomodulin; LRR prote 98.6 1.1E-08 3.9E-13 66.3 2.0 105 39-143 39-164 (185)
146 2p1m_B Transport inhibitor res 98.6 8.4E-09 2.9E-13 77.5 1.4 37 104-140 286-324 (594)
147 3rw6_A Nuclear RNA export fact 98.5 9.4E-08 3.2E-12 65.4 5.2 79 57-136 167-257 (267)
148 2ra8_A Uncharacterized protein 98.5 2.1E-07 7.1E-12 66.4 5.6 105 39-143 196-320 (362)
149 3e4g_A ATP synthase subunit S, 98.4 4.3E-07 1.5E-11 58.3 5.4 80 61-140 62-149 (176)
150 1io0_A Tropomodulin; LRR prote 98.4 3E-07 1E-11 59.6 4.5 91 53-143 29-136 (185)
151 4fdw_A Leucine rich hypothetic 98.3 7.5E-06 2.6E-10 59.2 10.3 83 60-145 248-337 (401)
152 3e4g_A ATP synthase subunit S, 98.3 1.1E-06 3.7E-11 56.4 5.0 83 39-121 64-154 (176)
153 3rw6_A Nuclear RNA export fact 98.2 2.7E-06 9.3E-11 58.2 5.5 65 81-146 167-237 (267)
154 2ra8_A Uncharacterized protein 97.9 2.4E-05 8.1E-10 55.9 5.4 102 39-143 175-292 (362)
155 3rfe_A Platelet glycoprotein I 97.5 0.00022 7.7E-09 43.4 5.7 56 63-120 11-68 (130)
156 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00027 9.2E-09 46.1 4.8 103 39-141 44-168 (197)
157 4gt6_A Cell surface protein; l 97.3 0.0018 6E-08 46.4 8.9 81 56-139 284-366 (394)
158 4gt6_A Cell surface protein; l 97.3 0.0022 7.5E-08 45.9 8.9 56 80-137 284-341 (394)
159 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00038 1.3E-08 45.4 3.3 84 57-140 38-136 (197)
160 3rfe_A Platelet glycoprotein I 97.1 0.0013 4.3E-08 40.0 5.4 55 40-97 12-68 (130)
161 4h09_A Hypothetical leucine ri 97.1 0.0024 8.1E-08 45.4 7.5 81 56-138 259-341 (379)
162 4fs7_A Uncharacterized protein 97.1 0.0035 1.2E-07 44.9 8.3 83 55-140 292-376 (394)
163 4fs7_A Uncharacterized protein 96.8 0.0034 1.2E-07 45.0 6.5 86 55-146 271-358 (394)
164 4h09_A Hypothetical leucine ri 96.5 0.02 6.9E-07 40.6 9.0 84 55-140 235-320 (379)
165 2lz0_A Uncharacterized protein 55.1 26 0.00089 19.7 4.5 39 54-93 14-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=9.3e-22 Score=138.84 Aligned_cols=144 Identities=24% Similarity=0.311 Sum_probs=83.6
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc--------cceecccccCCCcCcccccC---------
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCM--------- 58 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~--------- 58 (150)
+++|++|+|++|.+. .+|..+.. +++++|.++.+|. ++|++++|+..+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 456677777776655 55654433 6666666666654 66667766666666654433
Q ss_pred CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEc
Q 047447 59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVL 137 (150)
Q Consensus 59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l 137 (150)
+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|+.+..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 666666666665555 44555556666666666666666555555555666666666655444 5555555555555555
Q ss_pred cCCCCC-CCCC
Q 047447 138 SDNPLK-ILPK 147 (150)
Q Consensus 138 ~~n~l~-~~p~ 147 (150)
++|.+. .+|.
T Consensus 261 ~~n~~~~~~p~ 271 (328)
T 4fcg_A 261 KDCSNLLTLPL 271 (328)
T ss_dssp TTCTTCCBCCT
T ss_pred CCCCchhhcch
Confidence 554433 4443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=5.3e-21 Score=134.99 Aligned_cols=146 Identities=25% Similarity=0.352 Sum_probs=129.1
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
.+.+++|+|++|.+. .+|..+.. +++++|.++.+|. ++|++++|.+. .+|..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 468999999998865 77876554 8899999988876 88999997665 88999999999999999
Q ss_pred ecCcccCCCchhhcC---------cCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEcc
Q 047447 68 IDCQNFKILPYELGN---------LKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLS 138 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~---------l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~ 138 (150)
++|+..+.+|..+.. +++|+.|++++|.++.+|..++.+++|++|++++|.++++|..+..+++|++|+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 999999988876654 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCC
Q 047447 139 DNPLK-ILPKIL 149 (150)
Q Consensus 139 ~n~l~-~~p~~~ 149 (150)
+|.+. .+|..+
T Consensus 238 ~n~~~~~~p~~~ 249 (328)
T 4fcg_A 238 GCTALRNYPPIF 249 (328)
T ss_dssp TCTTCCBCCCCT
T ss_pred CCcchhhhHHHh
Confidence 98776 777765
No 3
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=5.8e-20 Score=127.69 Aligned_cols=145 Identities=26% Similarity=0.274 Sum_probs=103.9
Q ss_pred CCcEEecccCCCccccccCCcc------ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447 4 SLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC 70 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (150)
.+++|++++|.+.+..|..+.. +++++|.++.++. ++|++++|. .+.+|..+..+++|++|++++|
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCC
Confidence 4555555555544332222221 5555555554443 667777754 4466777778888888888888
Q ss_pred cccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447 71 QNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.+|.. +..+++|++|++++|+++.+|..
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 8887777778888888888888888887766 457788888888888888887765 57788888899988888888875
Q ss_pred C
Q 047447 149 L 149 (150)
Q Consensus 149 ~ 149 (150)
+
T Consensus 191 ~ 191 (290)
T 1p9a_G 191 F 191 (290)
T ss_dssp T
T ss_pred h
Confidence 4
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.9e-20 Score=144.86 Aligned_cols=89 Identities=28% Similarity=0.431 Sum_probs=64.9
Q ss_pred CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEE
Q 047447 59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLV 136 (150)
Q Consensus 59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~ 136 (150)
+++++.|++++|.+.+.+|..++.++.|+.|++++|.++ .+|..++.+++|+.|++++|++++ +|..+..+++|++++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 455667777777777777777777777777777777776 667777777777777777777776 777777777777777
Q ss_pred ccCCCCC-CCCC
Q 047447 137 LSDNPLK-ILPK 147 (150)
Q Consensus 137 l~~n~l~-~~p~ 147 (150)
+++|+++ .+|.
T Consensus 711 ls~N~l~g~iP~ 722 (768)
T 3rgz_A 711 LSNNNLSGPIPE 722 (768)
T ss_dssp CCSSEEEEECCS
T ss_pred CcCCcccccCCC
Confidence 7777776 6664
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=3e-20 Score=143.73 Aligned_cols=66 Identities=26% Similarity=0.453 Sum_probs=48.4
Q ss_pred CcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC-CCCCCC
Q 047447 84 KALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK-ILPKIL 149 (150)
Q Consensus 84 ~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~-~~p~~~ 149 (150)
++++.+++++|.++ .+|..++.+++|+.|++++|.+++ +|..++.+++|+.|++++|+++ .+|..+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 45666777777666 566677777777888888887776 7777777888888888888777 676554
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=1.8e-19 Score=124.62 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=80.0
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcC-cccccc---------cceecccccCCCcCcccccCCCCccEE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIG-IERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSL 65 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~-l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L 65 (150)
+++|++|++++|.+.+..|..+.. +++++|. ++.++. ++|++++|.+.+..+..+..+++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 445555555555444332332221 5555554 444321 555566655444444555556666666
Q ss_pred EeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447 66 EIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 66 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
++++|.+.+..+..+..+++|+.+++++|.++.++. .+..+++|+++++++|.+++ .|..+..+++|+.|++++|.+.
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 666665555544555566666666666666665544 35556666666666666665 3555666666666666666666
Q ss_pred CCC
Q 047447 144 ILP 146 (150)
Q Consensus 144 ~~p 146 (150)
.+|
T Consensus 215 ~~~ 217 (285)
T 1ozn_A 215 ALP 217 (285)
T ss_dssp CCC
T ss_pred cCC
Confidence 554
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.9e-20 Score=131.28 Aligned_cols=146 Identities=21% Similarity=0.166 Sum_probs=87.2
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcc-cccc--------cceecccccCCCcCcccccCCC-CccEE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIE-RLAS--------CKLVLEKCLSLQSLPSSLCMFK-SLTSL 65 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~-~l~~--------~~L~l~~~~~~~~~~~~~~~l~-~L~~L 65 (150)
+++|++|++++|.+.+.+|..+.. +++++|.++ .+|. ++|++++|.+.+.+|..+..++ +|++|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 566677777766666555554432 566666655 3332 5566666555445555555555 55555
Q ss_pred EeecCcccC-----------------------CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcc-
Q 047447 66 EIIDCQNFK-----------------------ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKR- 121 (150)
Q Consensus 66 ~l~~~~~~~-----------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~- 121 (150)
++++|.+.+ ..|..+..+++|+.+++++|.++..++.+..+++|+++++++|.+++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp ECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC
T ss_pred ECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc
Confidence 555555544 44444555556666666666555444445566667777777777664
Q ss_pred cCccccCCCCCCEEEccCCCCC-CCCC
Q 047447 122 LPESLNQLSSLKRLVLSDNPLK-ILPK 147 (150)
Q Consensus 122 lp~~~~~~~~L~~l~l~~n~l~-~~p~ 147 (150)
+|..+..+++|++|++++|++. .+|.
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CChHHhcCcCCCEEECcCCcccccCCC
Confidence 6666777777777777777766 5554
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=3.7e-19 Score=121.09 Aligned_cols=105 Identities=19% Similarity=0.264 Sum_probs=52.4
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+++++++|
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence 445555544333333344455555555555555544444444455555555555555554443 3445555555555555
Q ss_pred cCcccCc-cccCCCCCCEEEccCCCCC
Q 047447 118 GLKRLPE-SLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 118 ~i~~lp~-~~~~~~~L~~l~l~~n~l~ 143 (150)
.++.++. .+..+++|+.+++++|++.
T Consensus 166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 166 QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555332 3445555555555555544
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=6.3e-19 Score=121.12 Aligned_cols=144 Identities=22% Similarity=0.244 Sum_probs=79.2
Q ss_pred CCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEee
Q 047447 4 SLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 68 (150)
.|++|++++|.+.+..+..+.. +++++|.++.++. ++|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 4566666665543322212211 5555555554443 555666654433333444556666666666
Q ss_pred cCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCCCCC
Q 047447 69 DCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~~~p 146 (150)
+|.+.+..+..|..+++|+.|++++|.++.++. .+..+++|+.+++++|.++.++. .+..+++|++|++++|.++.+|
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 666555555555566666666666666665554 34556666666666666666443 3555666666666666666555
Q ss_pred C
Q 047447 147 K 147 (150)
Q Consensus 147 ~ 147 (150)
.
T Consensus 198 ~ 198 (270)
T 2o6q_A 198 E 198 (270)
T ss_dssp T
T ss_pred H
Confidence 4
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=2.8e-20 Score=130.45 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=105.0
Q ss_pred CCCCCcEEeccc-CCCccccccCCcc------ccCCCcCcc-cccc--------cceecccccCCCcCcccccCCCCccE
Q 047447 1 MLKSLQSIEISN-CSILKRFLEIPSC------NIDGGIGIE-RLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTS 64 (150)
Q Consensus 1 ~l~~L~~L~l~~-~~~~~~~p~~~~~------l~l~~~~l~-~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~ 64 (150)
+++.|++|++++ |.+.+.+|..+.. +++++|.++ .+|. ++|++++|.+.+..|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 378999999994 8888888876654 888888887 4554 88999999888899999999999999
Q ss_pred EEeecCcccCCCchhhcCcC-cCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCC
Q 047447 65 LEIIDCQNFKILPYELGNLK-ALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNP 141 (150)
Q Consensus 65 L~l~~~~~~~~~~~~~~~l~-~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~ 141 (150)
|++++|.+.+.+|..+..++ .|+.+++++|.+. .+|..+..+. |+.+++++|.+++ .|..+..+++|+.|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 99999999988998888887 8999999998876 4555555444 5666666555554 33334444444444444443
Q ss_pred C
Q 047447 142 L 142 (150)
Q Consensus 142 l 142 (150)
+
T Consensus 233 l 233 (313)
T 1ogq_A 233 L 233 (313)
T ss_dssp E
T ss_pred e
Confidence 3
No 11
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=5e-19 Score=122.96 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=122.6
Q ss_pred CCCCCcEEecccCCCccccccC-----CccccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 1 MLKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
.+++|++|++++|.+.+ ++.. +..+++++|.++.+|. ++|++++|.+.+..+..|..+++|++|++
T Consensus 53 ~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp TCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 36899999999988664 3432 2228999999988776 88999998766655677899999999999
Q ss_pred ecCcccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 68 IDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
++|.+.+..+..|..+++|+.|++++|.++.+|+. +..+++|+.+++++|.++.+|..+...++|+.+++++|++.
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 99999988777888999999999999999998874 57899999999999999999999988899999999999875
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=6.7e-19 Score=119.83 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=120.6
Q ss_pred CCcEEecccCCCccccccCCc----cccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447 4 SLQSIEISNCSILKRFLEIPS----CNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC 70 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p~~~~----~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (150)
..++++++++.+ ..+|..+. .+++++|.++.++. ++|++++|.+.+..+..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l-~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCC-SSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCc-cccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 467888888654 35555443 38888888876654 88999998777777777889999999999999
Q ss_pred cccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCCCCCC
Q 047447 71 QNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
.+.+..+..|..+++|+.|++++|.++.+++. +..+++|++|++++|.++.++. .+..+++|++|++++|.++.+|.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99988888889999999999999999988764 5889999999999999999776 58899999999999999997775
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1e-18 Score=120.13 Aligned_cols=142 Identities=24% Similarity=0.273 Sum_probs=121.1
Q ss_pred CCCCCcEEecccCCCccccccCCcc-------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccE
Q 047447 1 MLKSLQSIEISNCSILKRFLEIPSC-------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTS 64 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~ 64 (150)
++++|++|++++|.+. .+|...+. +++++|.++.++. ++|++++|.+....+..+..+++|++
T Consensus 59 ~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp SCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE
Confidence 3689999999998765 45554322 8899999887764 88999998776666677889999999
Q ss_pred EEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCC
Q 047447 65 LEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 65 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l 142 (150)
|++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+++++++|.++.+|.. +..+++|+.+++++|++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999999888777778999999999999999998876 578899999999999999997764 78899999999999997
Q ss_pred C
Q 047447 143 K 143 (150)
Q Consensus 143 ~ 143 (150)
.
T Consensus 218 ~ 218 (270)
T 2o6q_A 218 D 218 (270)
T ss_dssp C
T ss_pred e
Confidence 6
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=9.6e-19 Score=120.39 Aligned_cols=141 Identities=23% Similarity=0.281 Sum_probs=80.2
Q ss_pred CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
+++|++|++++|.+.+ ++.. +..+++++|.++.++. ++|++++|.+.+..+..+..+++|++|++
T Consensus 62 l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4566666666665443 2211 1115556665554443 55666665544444444556666666666
Q ss_pred ecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447 68 IDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~ 143 (150)
++|.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+++++++|.+++++. .+..+++|+.+++++|++.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 6666665555555666666666666666665544 34566666666666666666433 3566666666666666654
No 15
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.8e-19 Score=118.58 Aligned_cols=138 Identities=16% Similarity=0.168 Sum_probs=106.3
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 68 (150)
++.|++|++++|.+. .+|. +.. +++++|.++.++. ++|++++|.+....+..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~-~l~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCS-CCTT-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCcc-ChHH-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 467899999998765 4552 222 6677776665544 788888877766677778888889999999
Q ss_pred cCcccCCCchhhcCcCcCceEEecCCC-CCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 69 DCQNFKILPYELGNLKALETLIVDGTL-IREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
+|.+.+..+..+..+++|+.|++++|. ++.++ .+..+++|+++++++|.+++++ .+..+++|+++++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 888888777788888889999998887 77776 5778888999999988888876 6788888999999888875
No 16
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=3.8e-19 Score=124.56 Aligned_cols=148 Identities=20% Similarity=0.163 Sum_probs=119.5
Q ss_pred CCCCcEEecccCCCccccccCC--cc------ccCCCcCccccc------------c-cceecccccCCCcCcccccCCC
Q 047447 2 LKSLQSIEISNCSILKRFLEIP--SC------NIDGGIGIERLA------------S-CKLVLEKCLSLQSLPSSLCMFK 60 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~--~~------l~l~~~~l~~l~------------~-~~L~l~~~~~~~~~~~~~~~l~ 60 (150)
+++|++|++++|.+.+.+|..+ .. +++++|.++.+| . ++|++++|.+.+..+..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 6899999999999888888765 22 888999888653 3 7899999887777668899999
Q ss_pred CccEEEeecCcccCC--Cchhh--cCcCcCceEEecCCCCCcc---chh-hcCCCCCCEEEccCCcCcccC--ccccCCC
Q 047447 61 SLTSLEIIDCQNFKI--LPYEL--GNLKALETLIVDGTLIREV---PES-LGQLSSLKILVLTNNGLKRLP--ESLNQLS 130 (150)
Q Consensus 61 ~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~l~l~~n~l~~l---~~~-~~~~~~L~~l~l~~n~i~~lp--~~~~~~~ 130 (150)
+|++|++++|.+.+. .+..+ ..+++|+.|++++|.++.+ +.. +..+++|+++++++|.+++.+ ..+..++
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 999999999987765 33344 7889999999999999844 333 357889999999999998843 3466678
Q ss_pred CCCEEEccCCCCCCCCCCC
Q 047447 131 SLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 131 ~L~~l~l~~n~l~~~p~~~ 149 (150)
+|++|++++|.++.+|..+
T Consensus 254 ~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp TCCEEECTTSCCSSCCSSC
T ss_pred CCCEEECCCCccChhhhhc
Confidence 9999999999999888765
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.4e-18 Score=116.23 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=113.9
Q ss_pred cEEecccCCCccccccCCcc----ccCCCcCcccccc----------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447 6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS----------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ 71 (150)
Q Consensus 6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~----------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 71 (150)
+.++++++.+ +.+|..+.. +++++|.++.++. ++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 14 ~~l~~s~n~l-~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKL-NKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCC-SSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCc-ccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 5788888764 456665433 8888888887632 789999977666666678899999999999999
Q ss_pred ccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCC
Q 047447 72 NFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 72 ~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~ 143 (150)
+.+..+..|..+++|+.|++++|.++.+ |..+..+++|+++++++|.++.+ |..+..+++|+.+++++|++.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9888888899999999999999999977 45778899999999999999995 777899999999999999875
No 18
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.80 E-value=1.5e-18 Score=111.43 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=113.5
Q ss_pred CCCCcEEecccCCCc-cccccCCccccCCCcCcccccc-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchh
Q 047447 2 LKSLQSIEISNCSIL-KRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE 79 (150)
Q Consensus 2 l~~L~~L~l~~~~~~-~~~p~~~~~l~l~~~~l~~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 79 (150)
.+.|++|++++|.+. +.+|..+. .++. ++|++++|.+... ..+..+++|++|++++|.+.+.+|..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~----------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTA----------EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCG----------GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCChhhHHHHHH----------hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH
Confidence 367899999988865 45655422 2233 6899999875444 67889999999999999999888888
Q ss_pred hcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccCc----cccCCCCCCEEEccCCCCCCCCCC
Q 047447 80 LGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLPE----SLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 80 ~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp~----~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
+..+++|+.|++++|.++.++ ..+..+++|+++++++|.++++|. .+..+++|+++++++|.+..+|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 888999999999999999876 678899999999999999999876 688999999999999999998875
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.7e-18 Score=118.72 Aligned_cols=147 Identities=22% Similarity=0.301 Sum_probs=116.2
Q ss_pred CCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcC-cccccCCCCccEEE
Q 047447 3 KSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSL-PSSLCMFKSLTSLE 66 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 66 (150)
+.|++|++++|.+.+..+..+.. +++++|.++.++. ++|++++|...+.+ +..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 57899999998766543333322 8888888876632 88899997644444 67788899999999
Q ss_pred eecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCCC
Q 047447 67 IIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLKI 144 (150)
Q Consensus 67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~~ 144 (150)
+++|.+.+..+..+..+++|+.+++++|.++.++. .+..+++|+++++++|.++.++. .+..+++|+.+++++|.+..
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 99998888878888889999999999999987765 47889999999999999998665 48889999999999999884
Q ss_pred C-CCCC
Q 047447 145 L-PKIL 149 (150)
Q Consensus 145 ~-p~~~ 149 (150)
+ |..+
T Consensus 192 ~~~~~~ 197 (285)
T 1ozn_A 192 VHPHAF 197 (285)
T ss_dssp ECTTTT
T ss_pred cCHhHc
Confidence 4 5443
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=2.7e-18 Score=118.17 Aligned_cols=146 Identities=23% Similarity=0.276 Sum_probs=121.9
Q ss_pred CCCCcEEecccCCCcccccc-----CCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447 2 LKSLQSIEISNCSILKRFLE-----IPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID 69 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~-----~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 69 (150)
+++|+.|++++|.+. .++. .+..+++++|.++.++. ++|++++|.+.+..+..+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp HTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 578999999998754 3332 22228899999887665 8899999877666666678999999999999
Q ss_pred CcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCCCCCCC
Q 047447 70 CQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
|.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+.+++++|.+++++.. +..+++|++|++++|.+..+|.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 99998888788999999999999999998876 468999999999999999996654 6889999999999999997765
Q ss_pred C
Q 047447 148 I 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 199 ~ 199 (272)
T 3rfs_A 199 G 199 (272)
T ss_dssp T
T ss_pred H
Confidence 3
No 21
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=3.3e-19 Score=131.76 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=81.2
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhc-CcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG-NLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.++.++.. ..+++|+.|++++|
T Consensus 123 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN 201 (487)
T ss_dssp EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS
T ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCC
Confidence 5666777666555566677788888888888887777666665 677788888888877766433 35777888888888
Q ss_pred cCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447 118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 118 ~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~ 149 (150)
.++++|..+..+++|+.|++++|.+..+|..+
T Consensus 202 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred CCCCCCHhHcCCCCccEEEecCCcCcccchhh
Confidence 88887777777888888888888887777654
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.8e-18 Score=114.76 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=99.4
Q ss_pred cEEecccCCCccccccCCcc----ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447 6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN 72 (150)
Q Consensus 6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 72 (150)
+.++++++. .+.+|..... +++++|.++.++. ++|++++|.+....+..+..+++|++|++++|.+
T Consensus 22 ~~v~c~~~~-l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccCCC-cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 345555543 3344443322 5666666555422 6788888765433335567888888888888888
Q ss_pred cCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447 73 FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~ 143 (150)
.+..+..|..+++|+.|++++|.++.+|..+..+++|+++++++|.++.++. .+..+++|+.+++++|++.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8776777788888888888888888888888888888888888888888664 4778888888888888876
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=5.2e-18 Score=119.46 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=38.0
Q ss_pred hhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 78 YELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 78 ~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
..+..+++|+.|++++|.++.+++ .+..+++|+++++++|.++.+|..+..+++|+++++++|+++.+|.
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccCh
Confidence 344455555555555555554433 4455555555555555555555555555556666666665555543
No 24
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=4.5e-19 Score=124.44 Aligned_cols=110 Identities=18% Similarity=0.125 Sum_probs=71.8
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhh-cCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYEL-GNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++.++.. ..+++|+++++++|
T Consensus 123 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN 201 (317)
T ss_dssp EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS
T ss_pred CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC
Confidence 555666655544444556667777777777777766655544 3566777777777776655432 24667777777777
Q ss_pred cCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447 118 GLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 118 ~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~ 149 (150)
.++++|..+..+++|+.+++++|.++.+|..+
T Consensus 202 ~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred cCCcchhhhcccCcccEEECcCCcccchhhHh
Confidence 77776666777777777777777777666543
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=3.9e-18 Score=114.72 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=111.1
Q ss_pred ccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc
Q 047447 26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV 99 (150)
Q Consensus 26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l 99 (150)
++++++.++.+|. ++|++++|.+.+..|..+..+++|++|++++|.+....+..|..+++|+.|++++|.++.+
T Consensus 24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence 7888889998887 8899999888777788899999999999999998777667789999999999999999988
Q ss_pred ch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 100 PE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 100 ~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+|.
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH
Confidence 76 4689999999999999999999999999999999999999998875
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=127.32 Aligned_cols=140 Identities=20% Similarity=0.238 Sum_probs=98.6
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-----------cceecccccCCCcCccc-ccCCCCcc
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-----------CKLVLEKCLSLQSLPSS-LCMFKSLT 63 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-----------~~L~l~~~~~~~~~~~~-~~~l~~L~ 63 (150)
++.|++|++++|.+.+..|..+.. +++++|.++.++. ++|++++|.+.+.+|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 567777888877776655654433 6777777764321 67777776665546543 56677777
Q ss_pred EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCC
Q 047447 64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l 142 (150)
+|++++|.+.+..|..+. ++|+.|++++|.++.+|..+..+++|+++++++|.++.+|.. +..+++|+++++++|++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 777777777766655432 577888888887777777666777888888888888777765 67777888888888876
Q ss_pred C
Q 047447 143 K 143 (150)
Q Consensus 143 ~ 143 (150)
.
T Consensus 481 ~ 481 (520)
T 2z7x_B 481 D 481 (520)
T ss_dssp C
T ss_pred c
Confidence 5
No 27
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4.4e-18 Score=113.80 Aligned_cols=137 Identities=16% Similarity=0.219 Sum_probs=102.5
Q ss_pred cEEecccCCCccccccCC----ccccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447 6 QSIEISNCSILKRFLEIP----SCNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN 72 (150)
Q Consensus 6 ~~L~l~~~~~~~~~p~~~----~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 72 (150)
+.++++++. ++.+|..+ ..+++++|.++.++. ++|++++|.+....|..|..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 456666654 33445433 237777777766553 7788888777666677888888888888888888
Q ss_pred cCCCchhhcCcCcCceEEecCCCCCccc-hhhcCCCCCCEEEccCCcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447 73 FKILPYELGNLKALETLIVDGTLIREVP-ESLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~~l~l~~n~l~ 143 (150)
....+..|..+++|+.|++++|.++.++ ..+..+++|+++++++|.++.++. .+..+++|+.+++++|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8766666788888888888888888664 467788888888888888888654 4777888888888888764
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.5e-18 Score=121.10 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=58.8
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccC-CCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK-ILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~ 116 (150)
++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.++.+ +..+..+++|+.+++++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 445555544444444445555556666665555544 3444555566666666666666544 33455566666666666
Q ss_pred CcCcccCc-cccCCCCCCEEEccCCCCC
Q 047447 117 NGLKRLPE-SLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 117 n~i~~lp~-~~~~~~~L~~l~l~~n~l~ 143 (150)
|.+++++. .+..+++|+++++++|.+.
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CccCccChhhccCcccCCEeECCCCCCc
Confidence 66665433 3555666666666666665
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=3.5e-18 Score=129.90 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=107.5
Q ss_pred CCCcEEecccCCCccccccCCc-------c------ccCCCcCcccccc---------cceecccccCCCcCcccccC-C
Q 047447 3 KSLQSIEISNCSILKRFLEIPS-------C------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCM-F 59 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~-------~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~-l 59 (150)
++|++|++++|.+.+..|..+. . +++++|.++.+|. ++|++++|.+. .+|..+.. .
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 4677788887777766665444 1 7778888777665 67888886655 55544322 2
Q ss_pred -------CCccEEEeecCcccCCCchhhc--CcCcCceEEecCCCCCccchhhcCCCCCCEEEcc------CCcCcc-cC
Q 047447 60 -------KSLTSLEIIDCQNFKILPYELG--NLKALETLIVDGTLIREVPESLGQLSSLKILVLT------NNGLKR-LP 123 (150)
Q Consensus 60 -------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~------~n~i~~-lp 123 (150)
++|++|++++|.+. .+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+++ +|.+.+ +|
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 27888888888777 5666665 7888888888888888888888888888888884 455555 78
Q ss_pred ccccCCCCCCEEEccCCCCCCCCCCC
Q 047447 124 ESLNQLSSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 124 ~~~~~~~~L~~l~l~~n~l~~~p~~~ 149 (150)
..+..+++|+.|++++|.+..+|..+
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred HHHhcCCCCCEEECCCCcCCccCHhH
Confidence 88888888888888888888888754
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=3e-19 Score=139.38 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=4.7
Q ss_pred CCCCcEEec
Q 047447 2 LKSLQSIEI 10 (150)
Q Consensus 2 l~~L~~L~l 10 (150)
++.|++|+|
T Consensus 346 L~~L~~LdL 354 (876)
T 4ecn_A 346 LTELKVLSF 354 (876)
T ss_dssp CTTCCEEES
T ss_pred cccceEeee
Confidence 445555555
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=2e-18 Score=126.09 Aligned_cols=108 Identities=27% Similarity=0.293 Sum_probs=73.6
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|+++++++|
T Consensus 302 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC
Confidence 6677777665555566666777777777777776666666667777777777777777655 446667777777777777
Q ss_pred cCcccCcc-ccCCCCCCEEEccCCCCC-CCC
Q 047447 118 GLKRLPES-LNQLSSLKRLVLSDNPLK-ILP 146 (150)
Q Consensus 118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~-~~p 146 (150)
.++++|.. +..+++|+++++++|++. ..|
T Consensus 382 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 382 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 77775543 566777777777777766 444
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=8.2e-19 Score=132.24 Aligned_cols=110 Identities=20% Similarity=0.135 Sum_probs=66.2
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCC-CchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~ 116 (150)
++|++++|.+.+..|..+..+++|++|++++|.+.+. .|..+..+++|+.|++++|.++.+ |..+..+++|+.+++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 5556666555555555556666666666666665552 455556666666666666666544 33456666666666666
Q ss_pred CcCcc-cCccccCCCCCCEEEccCCCCCCCCCC
Q 047447 117 NGLKR-LPESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 117 n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
|.+++ .|..+..+++|+.|++++|+++.+|..
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 66666 355566666666666666666655543
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=7.7e-18 Score=118.75 Aligned_cols=86 Identities=28% Similarity=0.282 Sum_probs=58.3
Q ss_pred ccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCC
Q 047447 62 LTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 62 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n 140 (150)
|++|++++|.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+++++++|.++.+|..+..+++|+.+++++|
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC
Confidence 3334444444444444556666777777777777776554 567777788888888887777777777788888888888
Q ss_pred CCCCCCC
Q 047447 141 PLKILPK 147 (150)
Q Consensus 141 ~l~~~p~ 147 (150)
.++.+|.
T Consensus 275 ~l~~~~~ 281 (332)
T 2ft3_A 275 NITKVGV 281 (332)
T ss_dssp CCCBCCT
T ss_pred CCCccCh
Confidence 7776654
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=9.7e-19 Score=121.98 Aligned_cols=122 Identities=25% Similarity=0.276 Sum_probs=88.7
Q ss_pred ccCCCcCcccccc--------cceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCC
Q 047447 26 NIDGGIGIERLAS--------CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLI 96 (150)
Q Consensus 26 l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l 96 (150)
+++++|.++.+|. ++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.+
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 5555555554443 666777755443332 4566777888888888777777777777888888888888877
Q ss_pred Cc--cchhhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCCCC
Q 047447 97 RE--VPESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 97 ~~--l~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
.. +|..+..+++|+++++++|.++++ |..+..+++|++|++++|.+..++.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 64 566777888888888888888884 6678888888888888888876654
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=3.6e-18 Score=117.57 Aligned_cols=59 Identities=24% Similarity=0.184 Sum_probs=27.5
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCC-CchhhcCcCcCceEEecCCCCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI-LPYELGNLKALETLIVDGTLIR 97 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~l~ 97 (150)
++|++++|.+....+..+..+++|++|++++|.+.+. +|..+..+++|+.+++++|.++
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 4444444433333233344455555555555544442 3444555555555555555444
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.77 E-value=6.4e-19 Score=133.90 Aligned_cols=146 Identities=23% Similarity=0.250 Sum_probs=117.8
Q ss_pred CCCCCcEEecccCCCccccccCCcc------ccCCCcC-ccc--cc-------------c-cceecccccCCCcCcc--c
Q 047447 1 MLKSLQSIEISNCSILKRFLEIPSC------NIDGGIG-IER--LA-------------S-CKLVLEKCLSLQSLPS--S 55 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~-l~~--l~-------------~-~~L~l~~~~~~~~~~~--~ 55 (150)
++++|++|++++|.+.+.+|..+.. +++++|. ++. +| . ++|++++|.+. .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 3688999999999999999987665 8888887 664 44 2 78899997766 8888 8
Q ss_pred ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCC-CCEEEccCCcCcccCccccCCC--CC
Q 047447 56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSS-LKILVLTNNGLKRLPESLNQLS--SL 132 (150)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~-L~~l~l~~n~i~~lp~~~~~~~--~L 132 (150)
+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.++.+|..+..+++ |+++++++|.++.+|..+...+ +|
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 8999999999999999887888 788888889999988888888888888888 8888888888888887766544 67
Q ss_pred CEEEccCCCCC-CCCCC
Q 047447 133 KRLVLSDNPLK-ILPKI 148 (150)
Q Consensus 133 ~~l~l~~n~l~-~~p~~ 148 (150)
+.+++++|.+. .+|..
T Consensus 405 ~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp EEEECCSSCTTTTTTCS
T ss_pred CEEECcCCcCCCcchhh
Confidence 77777777776 44443
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.1e-17 Score=117.91 Aligned_cols=65 Identities=34% Similarity=0.417 Sum_probs=38.5
Q ss_pred cCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCCCCCCCCCCC
Q 047447 85 ALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 85 ~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n~l~~~p~~~ 149 (150)
+|+.+++++|.++.+ +..+..+++|+.+++++|.+++++ ..+..+++|+.|++++|.+..+|..+
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l 259 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 259 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh
Confidence 344444555555533 345566666667777666666643 34666666777777766666666543
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=8.6e-18 Score=123.03 Aligned_cols=108 Identities=30% Similarity=0.357 Sum_probs=70.8
Q ss_pred cceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~ 116 (150)
++|++++|+..+.++. .+..+++|++|++++|.+.+. | .+..+++|+.|++++|.++.+ +..+..+++|+.+++++
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 4455555444444442 355566666666666665543 2 355666777777777777755 44667777888888888
Q ss_pred CcCcc-cCccccCCCCCCEEEccCCCCCCCCCC
Q 047447 117 NGLKR-LPESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 117 n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
|.++. .+..+..+++|+.|++++|.++.+|..
T Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 88777 355677788888888888888776653
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=7.5e-18 Score=123.06 Aligned_cols=110 Identities=25% Similarity=0.293 Sum_probs=92.6
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+.+..|..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.++.+ +..+..+++|+++++++|
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence 3455555555555667788899999999999999888888899999999999999999876 457789999999999999
Q ss_pred cCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447 118 GLKRL-PESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 118 ~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
.++++ |..+..+++|++|++++|.++.+|..
T Consensus 358 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 358 HIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhhccccccccEEECCCCccccCCHh
Confidence 99984 77899999999999999999988763
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=3.1e-18 Score=115.64 Aligned_cols=145 Identities=18% Similarity=0.072 Sum_probs=102.5
Q ss_pred CCCCcEEecccCCCccccccCCcc-------ccCCC-cCcccccc---------cceecccccCCCcCcccccCCCCcc-
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC-------NIDGG-IGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLT- 63 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~-------l~l~~-~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~- 63 (150)
+++|++|++++|...+.++...+. +++++ |.++.++. ++|++++|.+. .+|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDI 131 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-ccccccccc
Confidence 567777777777534444442221 66666 66666553 66777776543 3555 66677776
Q ss_pred --EEEeecC-cccCCCchhhcCcCcCc-eEEecCCCCCccchhhcCCCCCCEEEccCCc-CcccC-ccccCC-CCCCEEE
Q 047447 64 --SLEIIDC-QNFKILPYELGNLKALE-TLIVDGTLIREVPESLGQLSSLKILVLTNNG-LKRLP-ESLNQL-SSLKRLV 136 (150)
Q Consensus 64 --~L~l~~~-~~~~~~~~~~~~l~~L~-~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~-i~~lp-~~~~~~-~~L~~l~ 136 (150)
+|++++| .+.+..+..|..+++|+ .+++++|.++.+|......++|+.+++++|. ++.++ ..+..+ ++|+.++
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 8888887 66665566678888888 8888888888777654344788889999885 88865 457788 8899999
Q ss_pred ccCCCCCCCCCC
Q 047447 137 LSDNPLKILPKI 148 (150)
Q Consensus 137 l~~n~l~~~p~~ 148 (150)
+++|+++.+|..
T Consensus 212 l~~N~l~~l~~~ 223 (239)
T 2xwt_C 212 VSQTSVTALPSK 223 (239)
T ss_dssp CTTCCCCCCCCT
T ss_pred CCCCccccCChh
Confidence 999999888764
No 41
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=121.56 Aligned_cols=147 Identities=20% Similarity=0.164 Sum_probs=113.6
Q ss_pred CCCcEEecccCCCccccccCC--cc------ccCCCcCccc------------ccc-cceecccccCCCcCcccccCCCC
Q 047447 3 KSLQSIEISNCSILKRFLEIP--SC------NIDGGIGIER------------LAS-CKLVLEKCLSLQSLPSSLCMFKS 61 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~--~~------l~l~~~~l~~------------l~~-~~L~l~~~~~~~~~~~~~~~l~~ 61 (150)
+.|++|++++|.+.+..|..+ .. +++++|.++. ++. ++|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 569999999999888777765 22 8888888775 223 88999998876777778889999
Q ss_pred ccEEEeecCcccCC--C--chhhcCcCcCceEEecCCCCCccchh----hcCCCCCCEEEccCCcCccc-CccccCC---
Q 047447 62 LTSLEIIDCQNFKI--L--PYELGNLKALETLIVDGTLIREVPES----LGQLSSLKILVLTNNGLKRL-PESLNQL--- 129 (150)
Q Consensus 62 L~~L~l~~~~~~~~--~--~~~~~~l~~L~~l~l~~n~l~~l~~~----~~~~~~L~~l~l~~n~i~~l-p~~~~~~--- 129 (150)
|++|++++|.+.+. . +..+..+++|+.|++++|.++.++.. +..+++|++|++++|.+++. |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 99999999987653 2 12235788899999999988765542 46778889999999998884 7766665
Q ss_pred CCCCEEEccCCCCCCCCCCC
Q 047447 130 SSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 130 ~~L~~l~l~~n~l~~~p~~~ 149 (150)
++|++|++++|.++.+|..+
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCC
T ss_pred CcCCEEECCCCCCCchhhhh
Confidence 58888888888888888754
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=7.6e-18 Score=120.20 Aligned_cols=141 Identities=23% Similarity=0.258 Sum_probs=109.4
Q ss_pred cEEecccCCCccccccCCcc----ccCCCcCcccccc----------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447 6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS----------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ 71 (150)
Q Consensus 6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~----------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 71 (150)
+.++++++. ++.+|..+.. +++++|.++.++. ++|++++|.+....+..|..+++|++|++++|.
T Consensus 21 ~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 467777755 3345554433 7777777775543 678899876666556678889999999999998
Q ss_pred ccCCCchhhcCcCcCceEEecCCCCCccc-hhhcCCCCCCEEEccCCcCcccCccc----cCCCCCCEEEccCCCCCCCC
Q 047447 72 NFKILPYELGNLKALETLIVDGTLIREVP-ESLGQLSSLKILVLTNNGLKRLPESL----NQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 72 ~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~i~~lp~~~----~~~~~L~~l~l~~n~l~~~p 146 (150)
+.+..+..|..+++|+.|++++|.+..++ ..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|.++.+|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 88777777888999999999999998764 47788999999999999999988764 56889999999999998877
Q ss_pred C
Q 047447 147 K 147 (150)
Q Consensus 147 ~ 147 (150)
.
T Consensus 180 ~ 180 (361)
T 2xot_A 180 L 180 (361)
T ss_dssp H
T ss_pred H
Confidence 3
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=1.3e-17 Score=121.73 Aligned_cols=108 Identities=24% Similarity=0.372 Sum_probs=67.1
Q ss_pred cceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~ 116 (150)
++|++++|+..+.++. .+..+++|++|++++|.+... | .+..+++|+.|++++|.++.+ +..+..+++|+.|++++
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 4445555444443332 345566666666666555432 2 255666677777777766655 34566777777777777
Q ss_pred CcCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447 117 NGLKRL-PESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 117 n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
|.++.+ +..+..+++|+.|++++|.++.+|..
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 777773 44577777888888888887766653
No 44
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=7.7e-18 Score=112.65 Aligned_cols=123 Identities=26% Similarity=0.404 Sum_probs=109.7
Q ss_pred ccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc
Q 047447 26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV 99 (150)
Q Consensus 26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l 99 (150)
++++++.++.+|. +.|++++|.+....+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.++.+
T Consensus 16 v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l 95 (220)
T 2v9t_B 16 VDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95 (220)
T ss_dssp EECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred EEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence 7788888888876 8899999876665566788999999999999999998899999999999999999999998
Q ss_pred chh-hcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447 100 PES-LGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 100 ~~~-~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
|+. +..+++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|..
T Consensus 96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 874 58899999999999999995 56789999999999999999987763
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=3.9e-18 Score=117.39 Aligned_cols=120 Identities=19% Similarity=0.200 Sum_probs=88.7
Q ss_pred CCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEee
Q 047447 4 SLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 68 (150)
.|++|++++|.+.+..+..+.. +++++|.++.++. ++|++++|.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 5888899888765543323322 7777777776554 778888876666656677788888888888
Q ss_pred cCcccCCCchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCcCcccC
Q 047447 69 DCQNFKILPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNGLKRLP 123 (150)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~i~~lp 123 (150)
+|.+.+..+..+..+++|+.|++++|.++. +|..+..+++|+++++++|.+++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 888777666567788888888888888875 5677788888888888888877643
No 46
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=4.5e-18 Score=122.24 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=93.8
Q ss_pred ccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc
Q 047447 26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV 99 (150)
Q Consensus 26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l 99 (150)
+++++|.+..+|. ++|++++|.+... ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+
T Consensus 210 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (390)
T 3o6n_A 210 LDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287 (390)
T ss_dssp EECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE
T ss_pred EECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc
Confidence 5566666655544 6677777654432 4577888899999999888888788888888899999999988887
Q ss_pred chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 100 PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 100 ~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
+..+..+++|+++++++|.++.+|..+..+++|+.|++++|.+..+|
T Consensus 288 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 77777888899999999988888887888888888888888887665
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=8.3e-18 Score=122.73 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE 66 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 66 (150)
+++|++|+|++|.+.+..+..+.. +++++|.++.++. ++|++++|.+....+..+..+++|++|+
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 455556666655543322222211 5555555554443 5556666544433334455666666666
Q ss_pred eecCcccCCCc-hhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCC
Q 047447 67 IIDCQNFKILP-YELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKI 144 (150)
Q Consensus 67 l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~ 144 (150)
+++|+..+.++ ..|..+++|+.|++++|.++.+| .+..+++|+.|++++|.++++ |..+..+++|+.|++++|.+..
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 66654444433 35666777777777777777665 356677777888888877774 5667778888888888888775
Q ss_pred CC
Q 047447 145 LP 146 (150)
Q Consensus 145 ~p 146 (150)
++
T Consensus 246 ~~ 247 (440)
T 3zyj_A 246 IE 247 (440)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=9.1e-18 Score=125.81 Aligned_cols=140 Identities=18% Similarity=0.178 Sum_probs=96.7
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-----------cceecccccCCCcCcc-cccCCCCcc
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-----------CKLVLEKCLSLQSLPS-SLCMFKSLT 63 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-----------~~L~l~~~~~~~~~~~-~~~~l~~L~ 63 (150)
+++|++|++++|.+.+..|..+.. +++++|.++.++. ++|++++|.+.+.+|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 467777777777776655554433 6777777765432 6677777666554554 356677777
Q ss_pred EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCEEEccCCCC
Q 047447 64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~l~l~~n~l 142 (150)
+|++++|.+.+..|..+. ++|+.+++++|.++.+|..+..+++|+++++++|.++.+|.. +..+++|+.+++++|++
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 777777777665554332 567778888777777777666777788888888877777766 67777788888887776
Q ss_pred C
Q 047447 143 K 143 (150)
Q Consensus 143 ~ 143 (150)
.
T Consensus 510 ~ 510 (562)
T 3a79_B 510 D 510 (562)
T ss_dssp C
T ss_pred C
Confidence 5
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=122.44 Aligned_cols=139 Identities=19% Similarity=0.166 Sum_probs=82.1
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE 66 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 66 (150)
+++|++|+|++|.+.+..|..+.. +++++|.++.+|. ++|++++|.+....+..+..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 456666666666555443433322 5666666655543 5666666655555555566666666666
Q ss_pred eecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCC
Q 047447 67 IIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n 140 (150)
+++|.+.+..+..|..+++|+.|++++|.++.++. .+..+++|+.+++++|.+..++ ..+..+++|+.+++++|
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 66666666555566666667777776666665554 4566666666666666666533 23455555555544443
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.1e-18 Score=136.16 Aligned_cols=144 Identities=19% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCCcEEecccCCCcc-----------------ccccCCc--c------ccCCCcCcc-cccc--------cceeccccc
Q 047447 2 LKSLQSIEISNCSILK-----------------RFLEIPS--C------NIDGGIGIE-RLAS--------CKLVLEKCL 47 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~-----------------~~p~~~~--~------l~l~~~~l~-~l~~--------~~L~l~~~~ 47 (150)
+++|++|+|++|.+.+ .+|..+. . +++++|.+. .+|. ++|++++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5677777777777666 2555543 2 444444322 2222 445555544
Q ss_pred -CCC-cCcccccCCC-------CccEEEeecCcccCCCch--hhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccC
Q 047447 48 -SLQ-SLPSSLCMFK-------SLTSLEIIDCQNFKILPY--ELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTN 116 (150)
Q Consensus 48 -~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~ 116 (150)
+.+ .+|..++.++ +|++|++++|.+. .+|. .+..+++|+.|++++|.++.+| .++.+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence 333 3443333222 5555555555544 3444 4555555555555555555444 444555555555555
Q ss_pred CcCcccCccccCCCC-CCEEEccCCCCCCCCC
Q 047447 117 NGLKRLPESLNQLSS-LKRLVLSDNPLKILPK 147 (150)
Q Consensus 117 n~i~~lp~~~~~~~~-L~~l~l~~n~l~~~p~ 147 (150)
|.++.+|..+..+++ |+.|++++|.+..+|.
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred CccccchHHHhhccccCCEEECcCCCCCcCch
Confidence 555555555555554 5555555555555544
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.6e-17 Score=125.34 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=40.7
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE 66 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 66 (150)
++.|++|+|++|.+.+..|..+.. +++++|.++.++. ++|++++|.+....+..|..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 345555555555444322222221 4455554444332 4445555433222222234445555555
Q ss_pred eecCcccCCCchhhcCcCcCceEEecCCC
Q 047447 67 IIDCQNFKILPYELGNLKALETLIVDGTL 95 (150)
Q Consensus 67 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~ 95 (150)
+++|.+.+..|..|..+++|+.|++++|.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence 55544444444444444444444444443
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=1.7e-17 Score=119.22 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=30.7
Q ss_pred CcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 84 KALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 84 ~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
++|+.+++++|.++.+ |..+..+++|+.+++++|.++++|..+..+++|++|++++|.+..+|.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 312 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 312 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCc
Confidence 3444444444444432 234444555555555555555444444445555555555555554443
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=7.6e-18 Score=126.99 Aligned_cols=131 Identities=20% Similarity=0.214 Sum_probs=102.3
Q ss_pred ccccccCC----ccccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcC
Q 047447 16 LKRFLEIP----SCNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGN 82 (150)
Q Consensus 16 ~~~~p~~~----~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 82 (150)
+..+|..+ ..+++++|.|+.++. ++|++++|.+.+..+..|.++++|++|++++|++.+..+..|.+
T Consensus 43 l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 34455433 337788887777664 78889887665555566888899999999998888777778888
Q ss_pred cCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEccCCCCCCCC
Q 047447 83 LKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 83 l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
+++|+.|++++|.++.+++ .++.+++|++|++++|.++. .|..+..+++|++|++++|.++.++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 8999999999998887776 57888899999999998876 4667788888999999998887543
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.4e-17 Score=125.72 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=82.1
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLE 66 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 66 (150)
++.|++|+|++|.+.+..|..+.. +++++|.++.+|. ++|++++|.+.+..|..+..+++|++|+
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 567777777777655543333222 6677777666554 6667777665555555566666666666
Q ss_pred eecCcccCCCc-----------------------------------------------------------hhhcCcCcCc
Q 047447 67 IIDCQNFKILP-----------------------------------------------------------YELGNLKALE 87 (150)
Q Consensus 67 l~~~~~~~~~~-----------------------------------------------------------~~~~~l~~L~ 87 (150)
+++|.+.+... ..+..+++|+
T Consensus 178 L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~ 257 (597)
T 3oja_B 178 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV 257 (597)
T ss_dssp CTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCC
Confidence 66665543211 1233445555
Q ss_pred eEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 88 TLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 88 ~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
.|++++|.+..+ |..+..+++|+.|++++|.++++|..+..+++|+.|++++|.+..+|.
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~ 318 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER 318 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCc
Confidence 555555555533 334555555555555555555555444555555555555555555543
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=2.7e-17 Score=125.49 Aligned_cols=146 Identities=25% Similarity=0.238 Sum_probs=78.7
Q ss_pred CCCCcEEecccCCCccccccCCc-------cccCCCcCcccccc---------cceecccccCC--CcCcccccCCCCcc
Q 047447 2 LKSLQSIEISNCSILKRFLEIPS-------CNIDGGIGIERLAS---------CKLVLEKCLSL--QSLPSSLCMFKSLT 63 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~-------~l~l~~~~l~~l~~---------~~L~l~~~~~~--~~~~~~~~~l~~L~ 63 (150)
+++|++|++++|.+.+.+|.... .+++++|.+..++. ++|++++|... +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 44555666665555444432111 14555555443221 44445444332 34455566666666
Q ss_pred EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch---------hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCC
Q 047447 64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE---------SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLK 133 (150)
Q Consensus 64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~---------~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~ 133 (150)
+|++++|.+.+..+..|..+++|+.+++++|.++.++. .+..+++|+.+++++|.++.+|.. +..+++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 66666666666555556666666666666666553321 144556666666666666665543 55566666
Q ss_pred EEEccCCCCCCCCC
Q 047447 134 RLVLSDNPLKILPK 147 (150)
Q Consensus 134 ~l~l~~n~l~~~p~ 147 (150)
.+++++|.++.+|.
T Consensus 564 ~L~Ls~N~l~~l~~ 577 (680)
T 1ziw_A 564 IIDLGLNNLNTLPA 577 (680)
T ss_dssp EEECCSSCCCCCCT
T ss_pred eeECCCCCCCcCCH
Confidence 66666666665554
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=2.8e-17 Score=115.84 Aligned_cols=142 Identities=18% Similarity=0.164 Sum_probs=116.8
Q ss_pred CCCCcEEecccCCCcc--ccccCC-----ccccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEee
Q 047447 2 LKSLQSIEISNCSILK--RFLEIP-----SCNIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~--~~p~~~-----~~l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 68 (150)
+++|++|++++|.+.. ..|..+ ..+++++|.++.+|. ++|++++|.+....+..+..+++|++|+++
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 5778888888877642 223322 227788888887775 889999987777666788999999999999
Q ss_pred cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCcc-ccC------CCCCCEEEccCCC
Q 047447 69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPES-LNQ------LSSLKRLVLSDNP 141 (150)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~-~~~------~~~L~~l~l~~n~ 141 (150)
+|.+.+..+..+..+++|+.+++++|.++.+|..+..+++|+++++++|.++.++.. +.. ...++.+++++|+
T Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 999999888889999999999999999999999899999999999999999997543 433 4679999999999
Q ss_pred CC
Q 047447 142 LK 143 (150)
Q Consensus 142 l~ 143 (150)
+.
T Consensus 306 ~~ 307 (332)
T 2ft3_A 306 VP 307 (332)
T ss_dssp SC
T ss_pred cc
Confidence 86
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=3.4e-17 Score=114.54 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=78.3
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 68 (150)
+++|++|++++|.+.+ ++. +.. +++++|.++.++. ++|++++|.+.. ++. +..+++|++|+++
T Consensus 62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLD 137 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECC
T ss_pred cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECC
Confidence 4566666666665443 222 111 5666666655443 566666654332 332 5566666666666
Q ss_pred cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
+|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.+++++|.+++++. +..+++|++|++++|.+..++
T Consensus 138 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 138 LNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred CCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence 665554432 5566666666666666665544 5566666666666666666543 555666666666666665443
No 58
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=8.2e-17 Score=106.55 Aligned_cols=105 Identities=26% Similarity=0.334 Sum_probs=87.4
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.++.+++ .+..+++|+++++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 55 TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 688999876654444556789999999999998887777778889999999999999987776 4688999999999999
Q ss_pred cCcccCcc-ccCCCCCCEEEccCCCCC
Q 047447 118 GLKRLPES-LNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~ 143 (150)
.+++++.. +..+++|+++++++|++.
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccceeCHHHhccCCCccEEEecCCCee
Confidence 99987654 788899999999999876
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.7e-17 Score=120.41 Aligned_cols=106 Identities=22% Similarity=0.288 Sum_probs=63.7
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCc-hhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILP-YELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+....+..+..+++|++|++++|+..+.++ ..|..+++|+.|++++|.++.+| .+..+++|+.|++++|
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN 228 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTS
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCC
Confidence 444555543332222344445555555555543333333 34556666777777777666654 3556677777777777
Q ss_pred cCccc-CccccCCCCCCEEEccCCCCCCC
Q 047447 118 GLKRL-PESLNQLSSLKRLVLSDNPLKIL 145 (150)
Q Consensus 118 ~i~~l-p~~~~~~~~L~~l~l~~n~l~~~ 145 (150)
.++++ |..+..+++|+.|++++|.+..+
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred cCcccCcccccCccCCCEEEeCCCcCceE
Confidence 77774 55677788888888888887744
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1e-17 Score=117.53 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=111.0
Q ss_pred CCCcEEecccCCCccccccCCcc---ccCCCcCcccccc---------cceecccccCCCcCcccc-cCCCCccEEEeec
Q 047447 3 KSLQSIEISNCSILKRFLEIPSC---NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSL-CMFKSLTSLEIID 69 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~~---l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~ 69 (150)
+.|++|++++|.+.+..+..+.. +++++|.++.++. ++|++++|.+....+..+ ..+++|++|++++
T Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 45555555555544433333222 8888888887654 889999987766666665 4789999999999
Q ss_pred CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
|.+.+..+ ...+++|+.+++++|.++.+++.+..+++|+++++++|.++.+|..+..+++|+.+++++|++.
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 99877632 3458999999999999999988888999999999999999999999999999999999999986
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=4.3e-18 Score=119.22 Aligned_cols=143 Identities=23% Similarity=0.151 Sum_probs=93.6
Q ss_pred CCCCcEEecccCCCccccc-----------cCCccccCCCcCcccccc---------cceecccccCCCc--Ccccc--c
Q 047447 2 LKSLQSIEISNCSILKRFL-----------EIPSCNIDGGIGIERLAS---------CKLVLEKCLSLQS--LPSSL--C 57 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p-----------~~~~~l~l~~~~l~~l~~---------~~L~l~~~~~~~~--~~~~~--~ 57 (150)
+++|++|++++|.+.+. | ..+..+++++|.++.++. ++|++++|...+. .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 56788888888776653 3 223336777777776653 7777887765543 23333 6
Q ss_pred CCCCccEEEeecCcccCC--Cc-hhhcCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccCccccCCCCC
Q 047447 58 MFKSLTSLEIIDCQNFKI--LP-YELGNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLPESLNQLSSL 132 (150)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~--~~-~~~~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L 132 (150)
.+++|++|++++|.+.+. .+ ..+..+++|+.|++++|.++..+ ..+..+++|+++++++|.++.+|..+. ++|
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L 276 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKL 276 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCc
Confidence 677788888877776632 22 23446677777777777777543 234556777777777777777776655 677
Q ss_pred CEEEccCCCCCCCCC
Q 047447 133 KRLVLSDNPLKILPK 147 (150)
Q Consensus 133 ~~l~l~~n~l~~~p~ 147 (150)
++|++++|+++.+|.
T Consensus 277 ~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 277 SVLDLSYNRLDRNPS 291 (312)
T ss_dssp EEEECCSSCCCSCCC
T ss_pred eEEECCCCCCCCChh
Confidence 777777777776654
No 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2e-17 Score=114.94 Aligned_cols=112 Identities=25% Similarity=0.246 Sum_probs=58.0
Q ss_pred ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447 26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE 98 (150)
Q Consensus 26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 98 (150)
+++++|.++.++. ++|++++|.+.. + ..+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.++.
T Consensus 95 L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 95 LFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred EECCCCcCCCChhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 4455555444433 455555543322 2 2344555555555555554443 334555555555555555554
Q ss_pred cchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 99 l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
+++ +..+++|+++++++|.+++++. +..+++|+.+++++|++.
T Consensus 171 ~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 171 IVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred chh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 443 4555555555555555555542 555555666665555544
No 63
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=110.17 Aligned_cols=124 Identities=17% Similarity=0.202 Sum_probs=108.5
Q ss_pred ccCCCcCcccccc------cceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447 26 NIDGGIGIERLAS------CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE 98 (150)
Q Consensus 26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 98 (150)
++++++.++.+|. ++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.
T Consensus 16 l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 95 (220)
T 2v70_A 16 VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95 (220)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred eEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc
Confidence 8899999998887 789999977655544 447899999999999999998888889999999999999999998
Q ss_pred cch-hhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCC-CCCC
Q 047447 99 VPE-SLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKIL-PKIL 149 (150)
Q Consensus 99 l~~-~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~-p~~~ 149 (150)
+++ .+..+++|++|++++|.++++ |..+..+++|++|++++|.++.+ |..+
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 766 578999999999999999995 67799999999999999999966 4443
No 64
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.7e-17 Score=108.73 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=101.8
Q ss_pred cEEecccCCCccccccCCccccCCCcCcccccccceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcC
Q 047447 6 QSIEISNCSILKRFLEIPSCNIDGGIGIERLASCKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLK 84 (150)
Q Consensus 6 ~~L~l~~~~~~~~~p~~~~~l~l~~~~l~~l~~~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 84 (150)
++++++++.+ +.+|..+.. .+ ++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..|..++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~------~l-----~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 78 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL------HT-----TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT------TC-----SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CEEEcCCCCc-CcCccCCCC------CC-----CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc
Confidence 4566666553 445543321 11 5789999765444443 378999999999999999998899999999
Q ss_pred cCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447 85 ALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR-LPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 85 ~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
+|+.|++++|.++.+++ .+..+++|++|++++|.+++ .|..+..+++|+++++++|++.
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99999999999997765 57889999999999999998 5778999999999999999986
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.9e-18 Score=121.18 Aligned_cols=23 Identities=48% Similarity=0.560 Sum_probs=14.3
Q ss_pred ccCCCCCCEEEccCCCCCCCCCC
Q 047447 126 LNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 126 ~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
+..+++|+.|++++|.++.+|..
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~ 295 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDG 295 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTT
T ss_pred HhcccCCCEEECCCCCCCccCHH
Confidence 34556666666666666666654
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.8e-17 Score=122.56 Aligned_cols=139 Identities=15% Similarity=0.064 Sum_probs=112.9
Q ss_pred CCCcEEecccCCCccccccCCc---cccCCCcCcccccc---------cceecccccCCCcCccccc-CCCCccEEEeec
Q 047447 3 KSLQSIEISNCSILKRFLEIPS---CNIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLC-MFKSLTSLEIID 69 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~---~l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~ 69 (150)
+.|++|++++|.+.+..+..+. .+++++|.++.++. ++|++++|.+.+..|..+. .+++|+.|++++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 3455555555554443333222 28888888886643 8899999888777777776 799999999999
Q ss_pred CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
|.+.+..+ ...+++|+.|++++|.++.+|+.+..+++|+.+++++|.++++|..+..+++|+.+++++|++.
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred Cccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 99887633 3468999999999999999988888999999999999999999999999999999999999987
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.8e-17 Score=124.93 Aligned_cols=120 Identities=23% Similarity=0.203 Sum_probs=74.7
Q ss_pred ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCC
Q 047447 26 NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLI 96 (150)
Q Consensus 26 l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l 96 (150)
+++++|.++.++. ++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|+.|++++|.+
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 5555555554433 5666666555544455566666666666666666666666666666666666666666
Q ss_pred Cccc-hhhcCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEccCCCCCCC
Q 047447 97 REVP-ESLGQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLSDNPLKIL 145 (150)
Q Consensus 97 ~~l~-~~~~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~~n~l~~~ 145 (150)
..++ ..++.+++|+++++++|.+++ +|..++.+++|++|++++|.+..+
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 6554 355666666666666666654 566666666666666666666643
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=6.4e-17 Score=121.96 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=54.2
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCC---CchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKI---LPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVL 114 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l 114 (150)
++|++++|.+....|..+..+++|++|++++|.+.+. .+..+..+++|+.+++++|.++.+ |..+..+++|+++++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 4455555444444444445555555555555554431 113344555555555555555533 234455555555555
Q ss_pred cCCcCcc-cCccccCCCCCCEEEccCCCCCCCC
Q 047447 115 TNNGLKR-LPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 115 ~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
++|.+++ .|..+..++.| .+++++|.++.+|
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 5555555 34445555555 5555555555443
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=124.40 Aligned_cols=107 Identities=26% Similarity=0.328 Sum_probs=49.0
Q ss_pred cceecccccCCCcCc-ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC--ccchhhcCCCCCCEEEcc
Q 047447 39 CKLVLEKCLSLQSLP-SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR--EVPESLGQLSSLKILVLT 115 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~--~l~~~~~~~~~L~~l~l~ 115 (150)
++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|+.+++++|.+. .+|..+..+++|+.++++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 444444443333222 23444455555555555444444444444445555555554443 234444444445555554
Q ss_pred CCcCccc-CccccCCCCCCEEEccCCCCCCC
Q 047447 116 NNGLKRL-PESLNQLSSLKRLVLSDNPLKIL 145 (150)
Q Consensus 116 ~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~ 145 (150)
+|.++++ |..+..+++|+++++++|.++.+
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 4444442 34444444444444444444433
No 70
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=6.2e-17 Score=106.22 Aligned_cols=104 Identities=29% Similarity=0.452 Sum_probs=92.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+ ..+|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|++|++++|
T Consensus 34 ~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 6789999654 5778889999999999999999998888889999999999999999998765 6789999999999999
Q ss_pred cCcccCcc-ccCCCCCCEEEccCCCCC
Q 047447 118 GLKRLPES-LNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~ 143 (150)
.++.+|.. +..+++|+.+++++|++.
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCeeChhhhhcCccccEEEeCCCCee
Confidence 99997764 788999999999999874
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=3.1e-17 Score=120.60 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=86.0
Q ss_pred CCCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceeccc---------------------
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEK--------------------- 45 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~--------------------- 45 (150)
+++|++|++++|.+.+..|..+.. +++++|.++.++. +.|++++
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 566777777776655433333222 5555555554432 3444444
Q ss_pred ---ccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcc
Q 047447 46 ---CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKR 121 (150)
Q Consensus 46 ---~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~ 121 (150)
|...+.++.......+|++|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|+.+++++|.+++
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence 33333333333333355555555555554444456667777777777777765544 45667777777777777777
Q ss_pred -cCccccCCCCCCEEEccCCCCCCCCC
Q 047447 122 -LPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 122 -lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
.|..+..+++|+.|++++|.++.+|.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred ECHHHhcCcccCCEEECCCCcCceeCH
Confidence 35567777777777777777776664
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=4.6e-17 Score=113.91 Aligned_cols=140 Identities=23% Similarity=0.264 Sum_probs=115.8
Q ss_pred CCCCCcEEecccCCCccccccCC-----ccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEee
Q 047447 1 MLKSLQSIEISNCSILKRFLEIP-----SCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p~~~-----~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 68 (150)
.+++|++|++++|.+.+ ++... ..+++++|.++.++. ++|++++|.+.. ++. +..+++|++|+++
T Consensus 83 ~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 83 NLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIG 159 (308)
T ss_dssp TCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECC
T ss_pred cCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEcc
Confidence 47899999999998554 44321 228899999887765 889999976544 443 7889999999999
Q ss_pred cCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 69 DCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 69 ~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
+|.+.+..+ +..+++|+.|++++|.++.+++ +..+++|+++++++|.+++++ .+..+++|+.+++++|++...|.
T Consensus 160 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 160 NAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 998877544 8899999999999999998775 778999999999999999977 48899999999999999887664
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=123.18 Aligned_cols=145 Identities=20% Similarity=0.271 Sum_probs=117.1
Q ss_pred CCCCcEEecccCCCcccccc-----CCccccCCCcCcccccc----------cceecccccCCCcCcccccCCCCccEEE
Q 047447 2 LKSLQSIEISNCSILKRFLE-----IPSCNIDGGIGIERLAS----------CKLVLEKCLSLQSLPSSLCMFKSLTSLE 66 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~-----~~~~l~l~~~~l~~l~~----------~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 66 (150)
+++|++|++++|.+.+..+. .+..+++++|.+...+. ++|++++|...+..|..+..+++|++|+
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 56677777777664432221 11227777777765422 8899999988888888899999999999
Q ss_pred eecCccc-CCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEccCCCCC
Q 047447 67 IIDCQNF-KILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 67 l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l~~n~l~ 143 (150)
+++|.+. +.+|..+..+++|+.|++++|.++.+ |..+..+++|+++++++|.+++++ ..+..+++|+.+++++|++.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 9999987 56788899999999999999999976 668899999999999999999965 45889999999999999987
Q ss_pred -CCC
Q 047447 144 -ILP 146 (150)
Q Consensus 144 -~~p 146 (150)
..|
T Consensus 532 ~~~~ 535 (570)
T 2z63_A 532 CSCP 535 (570)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 554
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=115.80 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=43.3
Q ss_pred cCCCCccEEEeecCcccCCCchhhcCc---CcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCC
Q 047447 57 CMFKSLTSLEIIDCQNFKILPYELGNL---KALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLK 133 (150)
Q Consensus 57 ~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~ 133 (150)
..+++|++|++++|.+.+..|+.+..+ ++|+.|++++|.++.+|..+. ++|+.+++++|.++++|. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 344555555555555555444433333 355555555555555544332 455555555555555443 34455555
Q ss_pred EEEccCCCCC
Q 047447 134 RLVLSDNPLK 143 (150)
Q Consensus 134 ~l~l~~n~l~ 143 (150)
.+++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 5555555554
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.8e-17 Score=110.28 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=101.2
Q ss_pred CCCcEEecccCCCcccccc-CCcc------ccCCCcC-cccccc---------cceeccc-ccCCCcCcccccCCCCccE
Q 047447 3 KSLQSIEISNCSILKRFLE-IPSC------NIDGGIG-IERLAS---------CKLVLEK-CLSLQSLPSSLCMFKSLTS 64 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~-~~~~------l~l~~~~-l~~l~~---------~~L~l~~-~~~~~~~~~~~~~l~~L~~ 64 (150)
+.|++|++++|.+.+ +|. .+.. +++++|. ++.++. ++|++++ |.+....+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 368899999987654 444 3322 7777775 766654 7788887 4443333456778888888
Q ss_pred EEeecCcccCCCchhhcCcCcCc---eEEecCC-CCCccch-hhcCCCCCC-EEEccCCcCcccCccccCCCCCCEEEcc
Q 047447 65 LEIIDCQNFKILPYELGNLKALE---TLIVDGT-LIREVPE-SLGQLSSLK-ILVLTNNGLKRLPESLNQLSSLKRLVLS 138 (150)
Q Consensus 65 L~l~~~~~~~~~~~~~~~l~~L~---~l~l~~n-~l~~l~~-~~~~~~~L~-~l~l~~n~i~~lp~~~~~~~~L~~l~l~ 138 (150)
|++++|.+.+ +|. +..+++++ .+++++| .++.+++ .+..+++|+ .+++++|.++.+|......++|+.++++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 8888887766 444 67777777 8888888 7887765 467788888 8888888888877654344778888888
Q ss_pred CCC-CCCCCC
Q 047447 139 DNP-LKILPK 147 (150)
Q Consensus 139 ~n~-l~~~p~ 147 (150)
+|+ ++.+|.
T Consensus 188 ~n~~l~~i~~ 197 (239)
T 2xwt_C 188 KNKYLTVIDK 197 (239)
T ss_dssp TCTTCCEECT
T ss_pred CCCCcccCCH
Confidence 885 776654
No 76
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.72 E-value=8e-17 Score=121.43 Aligned_cols=105 Identities=22% Similarity=0.162 Sum_probs=64.0
Q ss_pred cceecccccCCCcCcc-cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc--cc--hhhcCCCCCCEEE
Q 047447 39 CKLVLEKCLSLQSLPS-SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE--VP--ESLGQLSSLKILV 113 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~--~~~~~~~~L~~l~ 113 (150)
++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|+.+++++|.+.. ++ ..+..+++|+.++
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 4455555444433332 25556666666666666666556666666666666666666653 12 3456666777777
Q ss_pred ccCCcCcc-cCccccCCCCCCEEEccCCCCC
Q 047447 114 LTNNGLKR-LPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 114 l~~n~i~~-lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
+++|.+++ .|..+..+++|+.+++++|++.
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccC
Confidence 77777666 3556677777777777777766
No 77
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=4.8e-17 Score=102.37 Aligned_cols=124 Identities=19% Similarity=0.157 Sum_probs=93.8
Q ss_pred CCCcEEecccCCCc-cccccCCccccCCCcCcccccc-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhh
Q 047447 3 KSLQSIEISNCSIL-KRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYEL 80 (150)
Q Consensus 3 ~~L~~L~l~~~~~~-~~~p~~~~~l~l~~~~l~~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 80 (150)
+.|++|++++|.+. +.+|..+.. ++. ++|++++|.+... ..+..+++|++|++++|.+.+.+|..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~----------l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE----------FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT----------CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhh----------cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh
Confidence 56888888888766 455553322 222 5778888755443 567788889999999888888777777
Q ss_pred cCcCcCceEEecCCCCCccc--hhhcCCCCCCEEEccCCcCcccCc----cccCCCCCCEEEcc
Q 047447 81 GNLKALETLIVDGTLIREVP--ESLGQLSSLKILVLTNNGLKRLPE----SLNQLSSLKRLVLS 138 (150)
Q Consensus 81 ~~l~~L~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~i~~lp~----~~~~~~~L~~l~l~ 138 (150)
..+++|+.+++++|.++.++ ..+..+++|+++++++|.+++++. .+..+++|+.++++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77888999999988888764 567888889999998888888765 57788888888775
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=3.1e-16 Score=103.77 Aligned_cols=110 Identities=26% Similarity=0.295 Sum_probs=95.7
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.++. .+..+++|+++++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 689999987665555567899999999999999887777778899999999999999998876 4689999999999999
Q ss_pred cCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447 118 GLKRLPES-LNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
.++.++.. +..+++|+++++++|.++.+|..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 99997654 78899999999999999977764
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=1.9e-16 Score=109.99 Aligned_cols=139 Identities=27% Similarity=0.289 Sum_probs=113.3
Q ss_pred CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447 2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID 69 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 69 (150)
++.|++|++++|.+.. ++.. +..+++++|.++.++. ++|++++|.+. .++ .+..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~-~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCccc-ChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCC
Confidence 4678999999987543 3431 2228888888887664 88999997654 344 488999999999999
Q ss_pred CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
|.+.+. +.+..+++|+.|++++|.++.+ +.+..+++|++|++++|.+++++. +..+++|+.|++++|.++.+|.
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 988775 4578899999999999999987 567889999999999999999765 8899999999999999987764
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=8.5e-17 Score=119.36 Aligned_cols=108 Identities=22% Similarity=0.271 Sum_probs=63.6
Q ss_pred cceecccccCCC--cCcccccCCCCccEEEeecCcccCCCch-hhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEc
Q 047447 39 CKLVLEKCLSLQ--SLPSSLCMFKSLTSLEIIDCQNFKILPY-ELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVL 114 (150)
Q Consensus 39 ~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l 114 (150)
++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|+.+++++|.++ ..+..+. ++|+.+++
T Consensus 351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence 444455443332 3333444555555555555554443332 2444455555555555543 2222221 57778888
Q ss_pred cCCcCcccCccccCCCCCCEEEccCCCCCCCCCC
Q 047447 115 TNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 115 ~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
++|.++.+|..+..+++|+++++++|+++.+|..
T Consensus 429 s~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 429 HSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 8888878887777888889999998888888864
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=9.5e-17 Score=121.02 Aligned_cols=143 Identities=21% Similarity=0.240 Sum_probs=114.8
Q ss_pred CCcEEecccCCCcccccc-CCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 4 SLQSIEISNCSILKRFLE-IPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p~-~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
.+++|||++|.+.+ +|. .+.. +++++|.|+.++. ++|++++|++.+..+..|.++++|++|++
T Consensus 53 ~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 68999999988654 454 3332 8999999988765 88999997655444467899999999999
Q ss_pred ecCcccCCCchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCcCccc-CccccCCC----CCCEEEccCC
Q 047447 68 IDCQNFKILPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNGLKRL-PESLNQLS----SLKRLVLSDN 140 (150)
Q Consensus 68 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~----~L~~l~l~~n 140 (150)
++|.+.+..+..|+.+++|+.|++++|.++. .|..+..++.|+++++++|.++++ +..+..+. ....++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999988777789999999999999999874 567788999999999999999985 44454433 3457888888
Q ss_pred CCCCCCC
Q 047447 141 PLKILPK 147 (150)
Q Consensus 141 ~l~~~p~ 147 (150)
.+..++.
T Consensus 212 ~l~~i~~ 218 (635)
T 4g8a_A 212 PMNFIQP 218 (635)
T ss_dssp CCCEECT
T ss_pred cccccCc
Confidence 8876654
No 82
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=3.3e-16 Score=101.23 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=91.4
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|.++.+++ .+..+++|+++++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 688999976655444567889999999999999888777778899999999999999998876 4688999999999999
Q ss_pred cCcccCcc-ccCCCCCCEEEccCCCCCC
Q 047447 118 GLKRLPES-LNQLSSLKRLVLSDNPLKI 144 (150)
Q Consensus 118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~ 144 (150)
.++.+|.. +..+++|+++++++|++..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 111 QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99998766 5789999999999999873
No 83
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=113.07 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=50.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCc-hhhcCcCcCceEEecCC-CCCccc-hhhcCCCCCCEEEcc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILP-YELGNLKALETLIVDGT-LIREVP-ESLGQLSSLKILVLT 115 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n-~l~~l~-~~~~~~~~L~~l~l~ 115 (150)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.+++++| .++.++ ..+..+++|++++++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 445555543332222224455555555555554443322 23445555555555555 244332 234455555555555
Q ss_pred CCcCcc-cCccccCCCCCCEEEccCCCCCC
Q 047447 116 NNGLKR-LPESLNQLSSLKRLVLSDNPLKI 144 (150)
Q Consensus 116 ~n~i~~-lp~~~~~~~~L~~l~l~~n~l~~ 144 (150)
+|.+++ .|..+..+++|+++++++|.+..
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 555554 24445555555555555555443
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=4e-16 Score=119.06 Aligned_cols=145 Identities=23% Similarity=0.212 Sum_probs=88.7
Q ss_pred CCCCcEEecccCCCccccccCCc------cccCCCcCccc---ccc--------cceecccccCCCcCcccccCCCCccE
Q 047447 2 LKSLQSIEISNCSILKRFLEIPS------CNIDGGIGIER---LAS--------CKLVLEKCLSLQSLPSSLCMFKSLTS 64 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~------~l~l~~~~l~~---l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~ 64 (150)
++.|++|++++|.+.+..+..+. .+++++|.+.. +|. ++|++++|.+.+..+..+..+++|++
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCE
Confidence 56788888888775543332222 15556555431 221 66777776555444455666777777
Q ss_pred EEeecCcccCCCc--------hhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCcc-ccCCCCCCE
Q 047447 65 LEIIDCQNFKILP--------YELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPES-LNQLSSLKR 134 (150)
Q Consensus 65 L~l~~~~~~~~~~--------~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~~-~~~~~~L~~ 134 (150)
|++++|.+.+..+ ..+..+++|+.+++++|.++.+|. .+..+++|+.+++++|.++.+|.. +..+++|+.
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 7777776654311 125566677777777777776665 456677777777777777775544 456667777
Q ss_pred EEccCCCCCCCC
Q 047447 135 LVLSDNPLKILP 146 (150)
Q Consensus 135 l~l~~n~l~~~p 146 (150)
+++++|.++.++
T Consensus 589 L~L~~N~l~~~~ 600 (680)
T 1ziw_A 589 LNLQKNLITSVE 600 (680)
T ss_dssp EECTTSCCCBCC
T ss_pred EECCCCcCCccC
Confidence 777777666554
No 85
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3.2e-18 Score=128.56 Aligned_cols=106 Identities=26% Similarity=0.232 Sum_probs=95.4
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 118 (150)
+.|++++|.+ +.+|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+| .++.+++|+.|++++|.
T Consensus 444 ~~L~Ls~n~l-~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 444 RVLHLAHKDL-TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp SEEECTTSCC-SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred eEEEecCCCC-CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 5689999754 45776 899999999999999888 67888999999999999999999988 88999999999999999
Q ss_pred Cccc--CccccCCCCCCEEEccCCCCCCCCCC
Q 047447 119 LKRL--PESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 119 i~~l--p~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
++++ |..++.+++|+.|++++|+++.+|+.
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9996 88999999999999999999977764
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=3.2e-16 Score=118.51 Aligned_cols=139 Identities=22% Similarity=0.193 Sum_probs=92.4
Q ss_pred CCCCcEEecccCCCcccccc----CCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447 2 LKSLQSIEISNCSILKRFLE----IPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC 70 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~----~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (150)
|+.|++|+|++|.+.+..|- .+..|++++|.+..++. +.|++++|.+.. + +.+..+++|+.|++++|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNN 141 (605)
T ss_dssp CTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred CCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCC
Confidence 56777777777765543220 11116677776665544 667777765443 3 34667777777777777
Q ss_pred cccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 71 QNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
.+.+. ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+++++ .+..+++|+.|++++|++...|
T Consensus 142 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 142 KITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred ccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 76665 456677777888887777776655 667777888888887777764 4677777888888777765444
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.5e-16 Score=113.57 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=109.5
Q ss_pred ccCCCcCcccccc------cceecccccCCCcCccccc-CCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447 26 NIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLC-MFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE 98 (150)
Q Consensus 26 l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 98 (150)
++++++.++.+|. +.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|+.|++++|.++.
T Consensus 23 l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp EECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred EEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCc
Confidence 7889999998887 7899999876665556666 89999999999999998888889999999999999999998
Q ss_pred cch-hhcCCCCCCEEEccCCcCccc-CccccCCCCCCEEEccCCCCCCCCCC
Q 047447 99 VPE-SLGQLSSLKILVLTNNGLKRL-PESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 99 l~~-~~~~~~~L~~l~l~~n~i~~l-p~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
+++ .+..+++|+.|++++|.|+.+ +..+..+++|+.|++++|.++.+|..
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 876 678999999999999999995 67799999999999999999988864
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=5.6e-16 Score=116.35 Aligned_cols=129 Identities=26% Similarity=0.242 Sum_probs=66.1
Q ss_pred CCcEEecccCCCccccccCCcc----ccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccC
Q 047447 4 SLQSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK 74 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 74 (150)
+|++|++++|.+.+ +|..+.. +++++|.++.+|. ++|++++|.+.+ +|. +.. +|++|++++|.+.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCc-cCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC
Confidence 56667776665443 5543322 6666666665554 556666654433 444 333 55556665555544
Q ss_pred CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 75 ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 75 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.|+.+|.
T Consensus 135 -lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 135 -LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp -CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred -CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 332 34455555555555554443 33445555555555555444 33 444555555544444443
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=5.1e-17 Score=121.15 Aligned_cols=124 Identities=19% Similarity=0.140 Sum_probs=68.0
Q ss_pred CCCcEEecccCCCccccccCCcc------ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 3 KSLQSIEISNCSILKRFLEIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
+.|++|++++|.+.+..|..+.. +++++|.++.++. ++|++++|.+.+..+..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 35677777776655443433322 5566665554442 55666665544444444566666666666
Q ss_pred ecCcccCC-CchhhcCcCcCceEEecCCC-CCccch-hhcCCCCCCEEEccCCcCcc-cCccc
Q 047447 68 IDCQNFKI-LPYELGNLKALETLIVDGTL-IREVPE-SLGQLSSLKILVLTNNGLKR-LPESL 126 (150)
Q Consensus 68 ~~~~~~~~-~~~~~~~l~~L~~l~l~~n~-l~~l~~-~~~~~~~L~~l~l~~n~i~~-lp~~~ 126 (150)
++|.+.+. .|..+..+++|+.+++++|. ++.++. .+..+++|+++++++|.+++ .|..+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 66655542 34455566666666666665 344442 45556666666666666555 44433
No 90
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=7e-17 Score=124.39 Aligned_cols=104 Identities=25% Similarity=0.310 Sum_probs=93.7
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 118 (150)
+.|++++|.+ ..+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|..++.+++|++|++++|.
T Consensus 227 ~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 227 HALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC
T ss_pred cEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC
Confidence 7899999765 478877889999999999999888 77888999999999999999999999889999999999999999
Q ss_pred CcccCccccCCCCCCEEEccCCCCCC
Q 047447 119 LKRLPESLNQLSSLKRLVLSDNPLKI 144 (150)
Q Consensus 119 i~~lp~~~~~~~~L~~l~l~~n~l~~ 144 (150)
|+.+|..++.+++|++|++++|.++.
T Consensus 305 l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 305 VTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCccChhhhcCCCccEEeCCCCccCC
Confidence 99999999999999999999999883
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=5.1e-16 Score=116.58 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=75.4
Q ss_pred CCCCcEEecccCCCccccccCCc----cccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcc
Q 047447 2 LKSLQSIEISNCSILKRFLEIPS----CNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQN 72 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~----~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 72 (150)
+++|++|++++|.+.+ +|. +. .+++++|.++.+|. ++|++++|.+. .+|. .+++|++|++++|.+
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC
T ss_pred cCCCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCC
Confidence 3455555555555443 444 22 15555565555553 55666664433 2443 455666666666665
Q ss_pred cCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCC-------CEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 73 FKILPYELGNLKALETLIVDGTLIREVPESLGQLSSL-------KILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 73 ~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L-------~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
.+ +|. +. ++|+.|++++|.++.+|. +.. +| +.+++++|.|+.+|..+..+++|+.|++++|+++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 55 444 43 667777777777766665 432 55 7777777777777776666777777777777765
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=4.2e-16 Score=106.82 Aligned_cols=137 Identities=20% Similarity=0.180 Sum_probs=99.0
Q ss_pred CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447 2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID 69 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 69 (150)
+++|++|++++|.+. .+|.. +..+++++|.++.++. ++|++++|.+. .++.. .. ++|++|++++
T Consensus 40 l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~-~l~~~-~~-~~L~~L~L~~ 115 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLK-NLNGI-PS-ACLSRLFLDN 115 (263)
T ss_dssp HTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCS-CCTTC-CC-SSCCEEECCS
T ss_pred cCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccC-CcCcc-cc-CcccEEEccC
Confidence 578899999988654 44521 1127778887776654 77888886543 34432 23 7888888888
Q ss_pred CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
|.+.+. +.+..+++|+.|++++|.++.++ .+..+++|+++++++|.++++ ..+..+++|+.+++++|++...|
T Consensus 116 N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 116 NELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 877664 34778888888888888888775 567788888888888888887 56777888888888888776554
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=7.8e-16 Score=115.35 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=108.7
Q ss_pred CCcEEecccCCCcccc----ccCCccccCCCcCccc-ccc--------cceecccccCCC--cCcccccCCCCccEEEee
Q 047447 4 SLQSIEISNCSILKRF----LEIPSCNIDGGIGIER-LAS--------CKLVLEKCLSLQ--SLPSSLCMFKSLTSLEII 68 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~----p~~~~~l~l~~~~l~~-l~~--------~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~ 68 (150)
.|++|++++|.+.... ...+..+++++|.++. +|. ++|++++|.+.+ ..|..+..+++|++|+++
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 5788888887754321 1122238888888775 232 788898876554 334567888999999999
Q ss_pred cCcccCCCc-hhhcCcCcCceEEecCCCCC-ccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 69 DCQNFKILP-YELGNLKALETLIVDGTLIR-EVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 69 ~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
+|.+.+.+| ..+..+++|+.+++++|.++ ..+..+. ++|+.+++++|.++.+|..+..+++|++|++++|+++.+|
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence 988888555 45778889999999999886 3343332 6899999999999999988889999999999999999998
Q ss_pred CC
Q 047447 147 KI 148 (150)
Q Consensus 147 ~~ 148 (150)
..
T Consensus 490 ~~ 491 (562)
T 3a79_B 490 DG 491 (562)
T ss_dssp TT
T ss_pred HH
Confidence 75
No 94
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=9.7e-16 Score=108.39 Aligned_cols=103 Identities=30% Similarity=0.312 Sum_probs=63.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 118 (150)
++|++++|.+.. .+. +..+++|++|++++|.+.+. +.+..+++|+.+++++|.++.++ .+..+++|+.+++++|.
T Consensus 224 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 224 NSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred CEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc
Confidence 556666654332 222 55666666677666655543 34566666777777776666553 35566667777777776
Q ss_pred Ccc-cCccccCCCCCCEEEccCCCCCCCC
Q 047447 119 LKR-LPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 119 i~~-lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
+++ .+..+..+++|+.+++++|++..++
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCCcChhHhhccccCCEEEccCCcccccc
Confidence 665 3445666677777777777766543
No 95
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.67 E-value=8.8e-16 Score=112.77 Aligned_cols=117 Identities=22% Similarity=0.265 Sum_probs=69.4
Q ss_pred ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447 26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE 98 (150)
Q Consensus 26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 98 (150)
+++++|.++.++. ++|++++|.+.+. +. +..+++|+.|++++|.+.+..| +..+++|+.+++++|.++.
T Consensus 270 L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 270 LKLGANQISNISPLAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred EECCCCccCccccccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 4555555544332 5556666543332 22 4556666666666666555544 4566666666666666665
Q ss_pred cchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCC
Q 047447 99 VPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 99 l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
+ +.+..+++|+.+++++|.+++++. +..+++|+.+++++|++..+|..
T Consensus 346 ~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 346 V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 5 345566777777777777766433 66677777777777766655543
No 96
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=1.2e-15 Score=107.84 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=104.5
Q ss_pred CCCCcEEecccCCCccccc----cCCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecC
Q 047447 2 LKSLQSIEISNCSILKRFL----EIPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDC 70 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p----~~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 70 (150)
++.|++|++++|.+.+..+ ..+..+++++|.++.++. ++|++++|.+.. + +.+..+++|++|++++|
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCC
Confidence 3455555555554433221 112228888888887664 889999976544 4 45889999999999999
Q ss_pred cccCCCchhhcCcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCC
Q 047447 71 QNFKILPYELGNLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 71 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
.+.+. +.+..+++|+.+++++|.+... +..+..+++|+++++++|.+++++. +..+++|+.+++++|+++
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 88775 4578999999999999999855 4578899999999999999999655 888999999999999986
No 97
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=4.3e-16 Score=116.19 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=116.1
Q ss_pred CCCcEEecccCCCccccccCCcc----ccCCCcCcccccc---------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447 3 KSLQSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID 69 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 69 (150)
+..-+.+.+++. .+.+|..... +++++|.++.++. ++|++++|.+.+..|..+..+++|++|++++
T Consensus 5 ~~~~~c~~~~~~-l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 5 DASGVCDGRSRS-FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp CTTSEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCceEECCCCc-cccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 444456666655 4456664433 8899998886643 8899999877776677888999999999999
Q ss_pred CcccCCCchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCc-CcccC-ccccCCCCCCEEEccCCCCC-C
Q 047447 70 CQNFKILPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNG-LKRLP-ESLNQLSSLKRLVLSDNPLK-I 144 (150)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~-i~~lp-~~~~~~~~L~~l~l~~n~l~-~ 144 (150)
|.+.+..+..+..+++|+.|++++|.++. .+..++.+++|+++++++|. +..+| ..+..+++|++|++++|.+. .
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 99888888889999999999999998884 45678889999999999998 66666 46888999999999999988 4
Q ss_pred CCCCC
Q 047447 145 LPKIL 149 (150)
Q Consensus 145 ~p~~~ 149 (150)
.|..+
T Consensus 164 ~~~~l 168 (549)
T 2z81_A 164 QSQSL 168 (549)
T ss_dssp CTTTT
T ss_pred Chhhh
Confidence 56544
No 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=2.9e-16 Score=101.45 Aligned_cols=127 Identities=14% Similarity=0.147 Sum_probs=102.5
Q ss_pred CCCCcEEecccCCCccccccCCccccCCCcCccccc-c-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchh
Q 047447 2 LKSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLA-S-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE 79 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~~~~l~l~~~~l~~l~-~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 79 (150)
++.|++|++++|.+. .+|.. .... . ++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~-----------~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENL-----------GATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCG-----------GGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred cCCceEEEeeCCCCc-hhHHh-----------hhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcch
Confidence 567889999988755 33321 1111 2 588999976554 3 56888999999999999988766566
Q ss_pred hcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcccCcc----ccCCCCCCEEEccCCCC
Q 047447 80 LGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKRLPES----LNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 80 ~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~lp~~----~~~~~~L~~l~l~~n~l 142 (150)
+..+++|+.+++++|.++.+|. .+..+++|+++++++|.++.+|.. +..+++|+.++++.|.+
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6899999999999999998887 778999999999999999998875 88899999999998875
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=6e-16 Score=120.87 Aligned_cols=83 Identities=25% Similarity=0.237 Sum_probs=36.8
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchh--hcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYE--LGNLKALETLIVDGTLIREV--PESLGQLSSLKILVL 114 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l 114 (150)
++|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+..+ ++.++++++|++|++
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 44444444443334444444444444444444444433322 44444444444444444422 123444444444444
Q ss_pred cCCcCcc
Q 047447 115 TNNGLKR 121 (150)
Q Consensus 115 ~~n~i~~ 121 (150)
++|.+++
T Consensus 156 s~N~i~~ 162 (844)
T 3j0a_A 156 SSNQIFL 162 (844)
T ss_dssp ESSCCCC
T ss_pred CCCcCCe
Confidence 4444443
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.2e-16 Score=98.57 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=95.2
Q ss_pred cceecccccCC-CcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc-cchhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSL-QSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE-VPESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~~~L~~l~l~~ 116 (150)
+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|+.+++++|.++. +|..+..+++|+++++++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 68899998776 58888888999999999999988876 668899999999999999997 777777899999999999
Q ss_pred CcCcccC--ccccCCCCCCEEEccCCCCCCCCC
Q 047447 117 NGLKRLP--ESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 117 n~i~~lp--~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
|.+++++ ..+..+++|+++++++|.++.+|.
T Consensus 98 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 98 NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 9999965 778999999999999999987765
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=2.2e-15 Score=110.61 Aligned_cols=78 Identities=26% Similarity=0.310 Sum_probs=32.5
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 118 (150)
++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+..+++ +..+++|+.+++++|.
T Consensus 246 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred CEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc
Confidence 445555543322221 4444445555555444443322 3344444444444444443322 3334444444444444
Q ss_pred Ccc
Q 047447 119 LKR 121 (150)
Q Consensus 119 i~~ 121 (150)
+++
T Consensus 321 l~~ 323 (466)
T 1o6v_A 321 ISD 323 (466)
T ss_dssp CSC
T ss_pred CCC
Confidence 433
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=2.9e-15 Score=109.88 Aligned_cols=136 Identities=27% Similarity=0.317 Sum_probs=72.5
Q ss_pred CCCcEEecccCCCccccccCCcc---ccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccC
Q 047447 3 KSLQSIEISNCSILKRFLEIPSC---NIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFK 74 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~~---l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 74 (150)
++|++|++++|.+.+ +|..... +++++|.++.++. ++|++++|.+.+ +| .+..+++|++|++++|.+.+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc
Confidence 356666666665444 4443322 5666666665443 666677654433 55 46667777777777666554
Q ss_pred CCchhhcCcCcCceEEecCCCCCccchhhcCCCC--------------------CCEEEccCCcCcccCccccCCCCCCE
Q 047447 75 ILPYELGNLKALETLIVDGTLIREVPESLGQLSS--------------------LKILVLTNNGLKRLPESLNQLSSLKR 134 (150)
Q Consensus 75 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~--------------------L~~l~l~~n~i~~lp~~~~~~~~L~~ 134 (150)
+|.. ..+|+.+++++|.++.+| .++.+++ |+++++++|.++.+|. ++.+++|++
T Consensus 168 -lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~ 241 (454)
T 1jl5_A 168 -LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTT 241 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCE
T ss_pred -cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCE
Confidence 2221 124555555555444443 2334444 4444444444444442 555666666
Q ss_pred EEccCCCCCCCCC
Q 047447 135 LVLSDNPLKILPK 147 (150)
Q Consensus 135 l~l~~n~l~~~p~ 147 (150)
+++++|.++.+|.
T Consensus 242 L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 242 IYADNNLLKTLPD 254 (454)
T ss_dssp EECCSSCCSSCCS
T ss_pred EECCCCcCCcccc
Confidence 6666666665554
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=9.8e-16 Score=100.65 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=101.1
Q ss_pred ccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc
Q 047447 26 NIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE 98 (150)
Q Consensus 26 l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 98 (150)
+++++|.++.+|. ++|++++|. ...+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.
T Consensus 49 L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~ 126 (197)
T 4ezg_A 49 ITLANINVTDLTGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126 (197)
T ss_dssp EEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred EeccCCCccChHHHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence 7778888877665 889999973 3333 468889999999999999988777788999999999999999984
Q ss_pred -cchhhcCCCCCCEEEccCCc-CcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 99 -VPESLGQLSSLKILVLTNNG-LKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 99 -l~~~~~~~~~L~~l~l~~n~-i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
.+..+..+++|+++++++|. ++.+| .+..+++|+.|++++|.++.++
T Consensus 127 ~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 66788899999999999998 88887 6889999999999999998776
No 104
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.65 E-value=1.4e-15 Score=98.17 Aligned_cols=106 Identities=24% Similarity=0.354 Sum_probs=80.2
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n 117 (150)
+.++++++ .++.+|..+. +++++|++++|.+.+..|..|..+++|+.|++++|.++.+|+. +..+++|++|++++|
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 35666663 4466665543 6788888888888877777788888888888888888877764 477888888888888
Q ss_pred cCcccCcc-ccCCCCCCEEEccCCCCCCCCC
Q 047447 118 GLKRLPES-LNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
.|+.+|.. +..+++|+++++++|++...+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88887665 7778888888888888775543
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.9e-16 Score=98.86 Aligned_cols=107 Identities=27% Similarity=0.320 Sum_probs=94.9
Q ss_pred cceecccccCC-CcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCc-cchhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSL-QSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIRE-VPESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~~~L~~l~l~~ 116 (150)
++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.. +|..+..+++|+++++++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 68899998765 57888788999999999999998776 678899999999999999996 676777899999999999
Q ss_pred CcCcccC--ccccCCCCCCEEEccCCCCCCCCC
Q 047447 117 NGLKRLP--ESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 117 n~i~~lp--~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
|.+++++ ..+..+++|+++++++|.+..+|.
T Consensus 105 N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 105 NKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred CccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 9999976 678999999999999999987775
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=7.2e-16 Score=109.53 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=53.9
Q ss_pred hhcCcC-cCceEEecCCCCCccchhhcCCCCCCEEEccC-CcCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447 79 ELGNLK-ALETLIVDGTLIREVPESLGQLSSLKILVLTN-NGLKRLPES-LNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 79 ~~~~l~-~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~-n~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
.|..+. .++.+++++|.++.+++......+++.+.+.+ |.++.+|.. +..+++|+.|++++|+++.+|..
T Consensus 148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp SSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred chhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 344443 47778888888888877666667788888875 558888754 78889999999999999998874
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.8e-15 Score=114.41 Aligned_cols=139 Identities=27% Similarity=0.286 Sum_probs=114.4
Q ss_pred CCCCcEEecccCCCccccccC-----CccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeec
Q 047447 2 LKSLQSIEISNCSILKRFLEI-----PSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIID 69 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~-----~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 69 (150)
++.|++|++++|.+. .+|.. +..|++++|.+..++. +.|++++|.+. .++ .+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCC-CChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecC
Confidence 578999999998754 34431 1228899999887765 88999997654 444 688999999999999
Q ss_pred CcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCC
Q 047447 70 CQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 70 ~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
|.+.+. +.+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.+|.
T Consensus 119 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~ 192 (605)
T 1m9s_A 119 NGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 192 (605)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH
Confidence 988774 4588999999999999999987 577899999999999999999655 8899999999999999987753
No 108
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=117.93 Aligned_cols=147 Identities=21% Similarity=0.167 Sum_probs=116.6
Q ss_pred CCCCCcEEecccCCCccccc-cCCcc------ccCCCcCcccccc---------cceecccccCCCcCccc--ccCCCCc
Q 047447 1 MLKSLQSIEISNCSILKRFL-EIPSC------NIDGGIGIERLAS---------CKLVLEKCLSLQSLPSS--LCMFKSL 62 (150)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~p-~~~~~------l~l~~~~l~~l~~---------~~L~l~~~~~~~~~~~~--~~~l~~L 62 (150)
++++|++|+|++|...+.++ ..+.. +++++|.+..+.. ++|++++|.+.+..+.. +..+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 36788888888886666663 33333 8899999887633 88999998877766654 8899999
Q ss_pred cEEEeecCcccCCCc-hhhcCcCcCceEEecCCCCCcc-chhhcCC--CCCCEEEccCCcCcc-cCccccCCCC------
Q 047447 63 TSLEIIDCQNFKILP-YELGNLKALETLIVDGTLIREV-PESLGQL--SSLKILVLTNNGLKR-LPESLNQLSS------ 131 (150)
Q Consensus 63 ~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~l~~l-~~~~~~~--~~L~~l~l~~n~i~~-lp~~~~~~~~------ 131 (150)
++|++++|.+.+..+ ..|..+++|+.|++++|.++.. +..+..+ ++|+.++++.|.+.+ .|..+..+++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 999999999988765 6789999999999999998854 5566555 789999999999887 6666666554
Q ss_pred CCEEEccCCCCC-CCCC
Q 047447 132 LKRLVLSDNPLK-ILPK 147 (150)
Q Consensus 132 L~~l~l~~n~l~-~~p~ 147 (150)
|+.+++++|.+. .+|.
T Consensus 206 L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITG 222 (844)
T ss_dssp BSEEBCSSCCSSTTTTS
T ss_pred eeEEecCCCcCchhHHH
Confidence 999999999876 4443
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=1.1e-14 Score=106.81 Aligned_cols=99 Identities=23% Similarity=0.208 Sum_probs=63.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 118 (150)
++|++++|...+.+ .+..+++|++|++++|.+.+. | +..+++|+.+++++|.++.++ ++.+++|+++++++|.
T Consensus 151 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 151 TELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC
T ss_pred CEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc
Confidence 44455554344433 245566666666666665553 2 556666777777777666552 5567777777777777
Q ss_pred CcccCccccCCCCCCEEEccCCCCCCCC
Q 047447 119 LKRLPESLNQLSSLKRLVLSDNPLKILP 146 (150)
Q Consensus 119 i~~lp~~~~~~~~L~~l~l~~n~l~~~p 146 (150)
++++| +..+++|+.+++++|.++.+|
T Consensus 224 l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 224 LTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 77766 667777777777777776555
No 110
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=3.4e-15 Score=96.02 Aligned_cols=102 Identities=27% Similarity=0.387 Sum_probs=68.6
Q ss_pred ceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCc
Q 047447 40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNG 118 (150)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~ 118 (150)
+++++++ .++.+|..+ .+++++|++++|.+.+..|..|..+++|+.|++++|.++.+++ .+..+++|+++++++|.
T Consensus 13 ~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4566663 344455443 2667777777777777666667777777777777777776665 34677777777777777
Q ss_pred CcccCcc-ccCCCCCCEEEccCCCCCC
Q 047447 119 LKRLPES-LNQLSSLKRLVLSDNPLKI 144 (150)
Q Consensus 119 i~~lp~~-~~~~~~L~~l~l~~n~l~~ 144 (150)
++.++.. +..+++|+++++++|++..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7776543 6677777777777777653
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=8.3e-15 Score=107.46 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=103.6
Q ss_pred CCcEEecccCCCcc--ccccCCccccCCCcCcccccc-----cceecccccCCCcCcccccCCCCccEEEeecCcccCCC
Q 047447 4 SLQSIEISNCSILK--RFLEIPSCNIDGGIGIERLAS-----CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKIL 76 (150)
Q Consensus 4 ~L~~L~l~~~~~~~--~~p~~~~~l~l~~~~l~~l~~-----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 76 (150)
.+++|++++|.+.+ .+|.....+++++|.++.+|. ++|++++|.+. .++.. .++|++|++++|.+.+ +
T Consensus 72 ~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp TCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSS-C
T ss_pred CCCEEEecCCccccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCC-C
Confidence 46788888877554 334444448888888887765 77888886443 33321 2689999999998887 6
Q ss_pred chhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCC
Q 047447 77 PYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 77 ~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
| .+..+++|+.+++++|.++.+|... .+|+++++++|.++++| .++.+++|+++++++|.+..+|..
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred c-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC
Confidence 6 5889999999999999998877543 48999999999999988 588889999999999988877653
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=8e-15 Score=111.15 Aligned_cols=35 Identities=49% Similarity=0.571 Sum_probs=15.2
Q ss_pred CCCEEEccCCcCcccCccccCCCCCCEEEccCCCC
Q 047447 108 SLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 108 ~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l 142 (150)
+|+.|++++|.++.+|..+..+++|+.+++++|++
T Consensus 262 ~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 34444444444444444444444444444444444
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=9.7e-15 Score=110.70 Aligned_cols=61 Identities=36% Similarity=0.444 Sum_probs=52.3
Q ss_pred cCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCC
Q 047447 83 LKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKIL 149 (150)
Q Consensus 83 l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~ 149 (150)
+++|+.|++++|.++.+| ..+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|..+
T Consensus 220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 367889999999888877 456789999999999999887 6688999999999999998754
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=2.5e-14 Score=105.06 Aligned_cols=135 Identities=21% Similarity=0.095 Sum_probs=77.9
Q ss_pred CCCCcEEecccCCCccccccC----CccccCCCcCcccccc------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447 2 LKSLQSIEISNCSILKRFLEI----PSCNIDGGIGIERLAS------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ 71 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~~p~~----~~~l~l~~~~l~~l~~------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 71 (150)
++.|++|++++|.+.+ +|-. +..+++++|.++.++- ++|++++|.+.+ ++ +..+++|++|++++|.
T Consensus 63 l~~L~~L~Ls~n~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp CTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSC
T ss_pred cCCCCEEEccCCcCCe-EccccCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCc
Confidence 4566666666665443 2211 1115555555554322 555565544332 22 4455555555555555
Q ss_pred ccC---------------------CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCC
Q 047447 72 NFK---------------------ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLS 130 (150)
Q Consensus 72 ~~~---------------------~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~ 130 (150)
+.+ .+ .+..+++|+.+++++|.++.+| +..+++|+.+++++|.+++++ +..++
T Consensus 139 l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~ 212 (457)
T 3bz5_A 139 LTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNI 212 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred cceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCC
Confidence 444 32 2445566666666666666654 556667777777777777653 66777
Q ss_pred CCCEEEccCCCCCCCC
Q 047447 131 SLKRLVLSDNPLKILP 146 (150)
Q Consensus 131 ~L~~l~l~~n~l~~~p 146 (150)
+|+.+++++|+++.+|
T Consensus 213 ~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 213 QLTFLDCSSNKLTEID 228 (457)
T ss_dssp TCSEEECCSSCCSCCC
T ss_pred CCCEEECcCCcccccC
Confidence 7888888888877766
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=5.4e-15 Score=96.83 Aligned_cols=110 Identities=20% Similarity=0.150 Sum_probs=88.3
Q ss_pred CCCcEEecccCCCccccccCCccccCCCcCcccccc-cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhc
Q 047447 3 KSLQSIEISNCSILKRFLEIPSCNIDGGIGIERLAS-CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG 81 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~~l~l~~~~l~~l~~-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 81 (150)
+.|++|++++|.+.+..+... +..++. ++|++++|.+.+..|..+..+++|++|++++|.+.+..+..|.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~---------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 99 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGL---------FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCS---------GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred CCCCEEECCCCcCCccCCccc---------cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc
Confidence 368888998887654322211 222333 6899999887777788899999999999999999998888889
Q ss_pred CcCcCceEEecCCCCCcc-chhhcCCCCCCEEEccCCcCcc
Q 047447 82 NLKALETLIVDGTLIREV-PESLGQLSSLKILVLTNNGLKR 121 (150)
Q Consensus 82 ~l~~L~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~i~~ 121 (150)
.+++|+.|++++|.++.+ |..+..+++|+++++++|.++.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999999999965 5577889999999999999774
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=8.8e-15 Score=95.95 Aligned_cols=114 Identities=22% Similarity=0.158 Sum_probs=97.4
Q ss_pred cEEecccCCCccccccCCcc----ccCCCcCcccccc--------cceecccccCCCcCcccccCCCCccEEEeecCccc
Q 047447 6 QSIEISNCSILKRFLEIPSC----NIDGGIGIERLAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNF 73 (150)
Q Consensus 6 ~~L~l~~~~~~~~~p~~~~~----l~l~~~~l~~l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 73 (150)
++++++++.+ +.+|..+.. +++++|.++.+|. ++|++++|.+.+..+..|..+++|++|++++|.+.
T Consensus 13 ~~l~~~~~~l-~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCC-SSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCC-CcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 5788888764 456654433 8899999888775 88999998777666677999999999999999999
Q ss_pred CCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCc
Q 047447 74 KILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLK 120 (150)
Q Consensus 74 ~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~ 120 (150)
+..+..|..+++|+.|++++|.++.+++ .+..+++|+.+++++|.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9888889999999999999999998887 5788999999999999875
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=4.6e-15 Score=101.65 Aligned_cols=134 Identities=23% Similarity=0.221 Sum_probs=104.4
Q ss_pred CCcEEecccCCCccccc-----cCCccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCccEEEeecCc
Q 047447 4 SLQSIEISNCSILKRFL-----EIPSCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQ 71 (150)
Q Consensus 4 ~L~~L~l~~~~~~~~~p-----~~~~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 71 (150)
.+..++++++.+. +++ ..+..+++++|.++.++. ++|++++|.+. .++. +..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~i~-~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTT-SEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCcc-cccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCc
Confidence 4556677776644 333 122238888888887765 88999997554 4444 8899999999999998
Q ss_pred ccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCC
Q 047447 72 NFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKIL 145 (150)
Q Consensus 72 ~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~ 145 (150)
+.+..+ +.. ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|.++.+
T Consensus 97 l~~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 97 LKNLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSCCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred cCCcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 877432 233 88999999999998875 5788999999999999999986 688899999999999999866
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=6.4e-15 Score=113.52 Aligned_cols=138 Identities=20% Similarity=0.194 Sum_probs=85.5
Q ss_pred CcEEecccCCCccccccCC-ccccCCCcCcccccccceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCc
Q 047447 5 LQSIEISNCSILKRFLEIP-SCNIDGGIGIERLASCKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNL 83 (150)
Q Consensus 5 L~~L~l~~~~~~~~~p~~~-~~l~l~~~~l~~l~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 83 (150)
++.|+|..+.+... +... ..++++.+.|. .+++..+ .....+..+..+..|+.|++++|.+. .+|..+..+
T Consensus 175 ~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~-----~~~~~~n-~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l 246 (727)
T 4b8c_D 175 TPKIELFANGKDEA-NQALLQHKKLSQYSID-----EDDDIEN-RMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGC
T ss_pred cceEEeeCCCCCcc-hhhHhhcCccCccccc-----Ccccccc-ceecChhhhccCCCCcEEECCCCCCC-CCChhhcCC
Confidence 45556655544332 2222 22555555554 3344443 33355677889999999999999877 566666799
Q ss_pred CcCceEEecCCCCCccchhhcCCCCCCEEEccCCcCcccCccccCCCCCCEEEccCCCCCCCCCCCC
Q 047447 84 KALETLIVDGTLIREVPESLGQLSSLKILVLTNNGLKRLPESLNQLSSLKRLVLSDNPLKILPKILN 150 (150)
Q Consensus 84 ~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~~L~~l~l~~n~l~~~p~~~~ 150 (150)
++|+.|++++|.++.+|..++.+++|++|++++|.|+.+|..++.+++|++|++++|.++.+|..|+
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~ 313 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFG 313 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTT
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998764
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.1e-15 Score=114.88 Aligned_cols=96 Identities=21% Similarity=0.239 Sum_probs=84.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCcc--chhhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREV--PESLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~~ 116 (150)
+.|++++|.+. .+|..++.+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.+ |..++.+++|+.+++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 78999997655 889999999999999999999887 56 789999999999999999977 78899999999999999
Q ss_pred CcCcccCccc----cCCCCCCEEEc
Q 047447 117 NGLKRLPESL----NQLSSLKRLVL 137 (150)
Q Consensus 117 n~i~~lp~~~----~~~~~L~~l~l 137 (150)
|.++++|... ..+++|+.|++
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcCCCCccHHHHHHHHCcccCccCC
Confidence 9999976543 34788998864
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.5e-14 Score=93.37 Aligned_cols=105 Identities=28% Similarity=0.316 Sum_probs=89.7
Q ss_pred cceecccccCCCcCcccccCCC-CccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhh-cCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFK-SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESL-GQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~-~~~~~L~~l~l~~ 116 (150)
++|++++|.+. .++. +..+. +|++|++++|.+.+. +.+..+++|+.+++++|.++.+|+.+ ..+++|+++++++
T Consensus 22 ~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 22 RELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp EEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred eEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 67899997554 4554 44544 999999999998876 56889999999999999999887644 8899999999999
Q ss_pred CcCcccCc--cccCCCCCCEEEccCCCCCCCCC
Q 047447 117 NGLKRLPE--SLNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 117 n~i~~lp~--~~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
|.++.+|. .+..+++|+.+++++|++..+|.
T Consensus 98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 99998887 78999999999999999987775
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=1.8e-13 Score=88.23 Aligned_cols=107 Identities=28% Similarity=0.413 Sum_probs=89.4
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
+.++++++ ..+.+|..+ .+++++|++++|.+.+..+..+..+++|+.|++++|.++.+++ .+..+++|+++++++|
T Consensus 10 ~~l~~~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSK-GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSS-CCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCC-CCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 35666664 345566433 3689999999999887777778899999999999999998876 4689999999999999
Q ss_pred cCcccCcc-ccCCCCCCEEEccCCCCCCCCCC
Q 047447 118 GLKRLPES-LNQLSSLKRLVLSDNPLKILPKI 148 (150)
Q Consensus 118 ~i~~lp~~-~~~~~~L~~l~l~~n~l~~~p~~ 148 (150)
.++.++.. +..+++|+++++++|.++.+|..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 99997654 78899999999999999988874
No 122
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=5.1e-15 Score=106.26 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=101.8
Q ss_pred CCCCcEEecccCCCccc----cc---------------cCCccccCCCcCcc--ccc----------c-cceecccccCC
Q 047447 2 LKSLQSIEISNCSILKR----FL---------------EIPSCNIDGGIGIE--RLA----------S-CKLVLEKCLSL 49 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~----~p---------------~~~~~l~l~~~~l~--~l~----------~-~~L~l~~~~~~ 49 (150)
++.|++|+|++|.+... ++ ..+..+++++|.++ .++ . ++|++++|.+.
T Consensus 121 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred CCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 56777777777766422 22 23344777777775 233 1 77888887554
Q ss_pred C-----cCcccccCCCCccEEEeecCccc----CCCchhhcCcCcCceEEecCCCCCc-----cchhh--cCCCCCCEEE
Q 047447 50 Q-----SLPSSLCMFKSLTSLEIIDCQNF----KILPYELGNLKALETLIVDGTLIRE-----VPESL--GQLSSLKILV 113 (150)
Q Consensus 50 ~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~--~~~~~L~~l~ 113 (150)
. ..+..+..+++|++|++++|.+. ..+|..+..+++|+.|++++|.++. ++..+ +.+++|++|+
T Consensus 201 ~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~ 280 (386)
T 2ca6_A 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280 (386)
T ss_dssp HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred HhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEE
Confidence 2 23336677888888888888875 5567777888888999998888873 35555 3488899999
Q ss_pred ccCCcCcc-----cCccc-cCCCCCCEEEccCCCCCCC
Q 047447 114 LTNNGLKR-----LPESL-NQLSSLKRLVLSDNPLKIL 145 (150)
Q Consensus 114 l~~n~i~~-----lp~~~-~~~~~L~~l~l~~n~l~~~ 145 (150)
+++|.++. +|..+ .++++|++|++++|.+...
T Consensus 281 L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 99988887 77776 5678899999999888743
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=8.2e-14 Score=89.89 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=75.6
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchh-hcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPES-LGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n 117 (150)
++|++++|.+.+..|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++. +..+++|+++++++|
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCC
Confidence 6899999877766678889999999999999998887777788999999999999999988874 789999999999999
Q ss_pred cCcccCc
Q 047447 118 GLKRLPE 124 (150)
Q Consensus 118 ~i~~lp~ 124 (150)
.+...+.
T Consensus 116 ~~~c~~~ 122 (174)
T 2r9u_A 116 PWDCECR 122 (174)
T ss_dssp CBCTTBG
T ss_pred Ccccccc
Confidence 9886543
No 124
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=7.1e-14 Score=89.83 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=74.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
++|++++|.+.+..|..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+++++++|
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 688999987777767889999999999999999998877788999999999999999998877 5789999999999999
Q ss_pred cCcc
Q 047447 118 GLKR 121 (150)
Q Consensus 118 ~i~~ 121 (150)
.++.
T Consensus 113 ~~~c 116 (170)
T 3g39_A 113 PWDC 116 (170)
T ss_dssp CBCT
T ss_pred CCCC
Confidence 8764
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=3.5e-15 Score=105.07 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=52.1
Q ss_pred cceecccccCCC--cCcccccCCCCccEEEeecC-cccCC-CchhhcCcC-cCceEEecCCC--CC--ccchhhcCCCCC
Q 047447 39 CKLVLEKCLSLQ--SLPSSLCMFKSLTSLEIIDC-QNFKI-LPYELGNLK-ALETLIVDGTL--IR--EVPESLGQLSSL 109 (150)
Q Consensus 39 ~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~l~l~~n~--l~--~l~~~~~~~~~L 109 (150)
++|++++|...+ .++..+..+++|++|++++| .+.+. ++..+..++ +|+.|++++|. ++ .++..+..+++|
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 555555552222 23444455555666666555 44432 334445555 56666665552 32 334444555566
Q ss_pred CEEEccCCc-Ccc-cCccccCCCCCCEEEccCC
Q 047447 110 KILVLTNNG-LKR-LPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 110 ~~l~l~~n~-i~~-lp~~~~~~~~L~~l~l~~n 140 (150)
+++++++|. +++ .+..+..+++|++|++++|
T Consensus 225 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 666666655 443 4444555555666666555
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=5.4e-15 Score=106.12 Aligned_cols=39 Identities=31% Similarity=0.387 Sum_probs=15.9
Q ss_pred cCCCCCCEEEccCCcCc-----ccCccccCCCCCCEEEccCCCC
Q 047447 104 GQLSSLKILVLTNNGLK-----RLPESLNQLSSLKRLVLSDNPL 142 (150)
Q Consensus 104 ~~~~~L~~l~l~~n~i~-----~lp~~~~~~~~L~~l~l~~n~l 142 (150)
..+++|+.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 33444444444444442 1333334444444444444443
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=6.2e-15 Score=103.77 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=103.2
Q ss_pred CCCcEEecccCCCccccccCCc-----cccCCCcCccc--ccc--------cceecccccCCCcCcccccCCCCccEEEe
Q 047447 3 KSLQSIEISNCSILKRFLEIPS-----CNIDGGIGIER--LAS--------CKLVLEKCLSLQSLPSSLCMFKSLTSLEI 67 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~~-----~l~l~~~~l~~--l~~--------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 67 (150)
+.+++|++++|.+.+..+.... .+++++|.+.. ++. ++|++++|.+....+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 5677777777765554443221 16777776652 332 78888888766677777888899999999
Q ss_pred ecC-cccC-CCchhhcCcCcCceEEecCC-CCCc--cchhhcCCC-CCCEEEccCC--cCcc--cCccccCCCCCCEEEc
Q 047447 68 IDC-QNFK-ILPYELGNLKALETLIVDGT-LIRE--VPESLGQLS-SLKILVLTNN--GLKR--LPESLNQLSSLKRLVL 137 (150)
Q Consensus 68 ~~~-~~~~-~~~~~~~~l~~L~~l~l~~n-~l~~--l~~~~~~~~-~L~~l~l~~n--~i~~--lp~~~~~~~~L~~l~l 137 (150)
++| .+.+ .++..+..+++|+.|++++| .++. ++..+..++ +|++|++++| .+++ ++..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 988 4554 25666778889999999998 8873 566677888 8999999998 4553 6777788899999999
Q ss_pred cCCC-CC
Q 047447 138 SDNP-LK 143 (150)
Q Consensus 138 ~~n~-l~ 143 (150)
++|. ++
T Consensus 230 ~~~~~l~ 236 (336)
T 2ast_B 230 SDSVMLK 236 (336)
T ss_dssp TTCTTCC
T ss_pred CCCCcCC
Confidence 9988 54
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.49 E-value=3e-13 Score=95.75 Aligned_cols=102 Identities=30% Similarity=0.255 Sum_probs=74.0
Q ss_pred ceecccccCCCcCcccccCCCCccEEEeec-CcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCC
Q 047447 40 KLVLEKCLSLQSLPSSLCMFKSLTSLEIID-CQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNN 117 (150)
Q Consensus 40 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n 117 (150)
.++.++++.+..+|. +..+++|++|++++ |.+.+..+..|..+++|+.|++++|.++.+++ .+..+++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 446666435566777 77777888888875 77777766777788888888888888876654 5677888888888888
Q ss_pred cCcccCccc-cCCCCCCEEEccCCCCC
Q 047447 118 GLKRLPESL-NQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 118 ~i~~lp~~~-~~~~~L~~l~l~~n~l~ 143 (150)
.++.+|..+ ..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888876553 3344 888888888775
No 129
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=4.8e-14 Score=100.51 Aligned_cols=84 Identities=21% Similarity=0.113 Sum_probs=38.9
Q ss_pred CccEEEeecCcccCCC----chhhcCcC-cCceEEecCCCCCccc-h----hhcCC-CCCCEEEccCCcCcc-----cCc
Q 047447 61 SLTSLEIIDCQNFKIL----PYELGNLK-ALETLIVDGTLIREVP-E----SLGQL-SSLKILVLTNNGLKR-----LPE 124 (150)
Q Consensus 61 ~L~~L~l~~~~~~~~~----~~~~~~l~-~L~~l~l~~n~l~~l~-~----~~~~~-~~L~~l~l~~n~i~~-----lp~ 124 (150)
+|++|++++|.+.... +..+..++ +|+.|++++|.++... . .+..+ ++|++|++++|.+++ ++.
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 5555555555444322 22223333 5555555555554221 1 22233 355555555555554 333
Q ss_pred cccC-CCCCCEEEccCCCCCC
Q 047447 125 SLNQ-LSSLKRLVLSDNPLKI 144 (150)
Q Consensus 125 ~~~~-~~~L~~l~l~~n~l~~ 144 (150)
.+.. .++|++|++++|.+..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCC
T ss_pred HHhcCCCCceEEECcCCCCCc
Confidence 3333 2356666666665553
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.1e-15 Score=100.49 Aligned_cols=116 Identities=22% Similarity=0.162 Sum_probs=58.7
Q ss_pred CCCcEEecccCCCcccccc------CC------ccccCCCcCcccccc-------cceecccccCCCcCcccccCCCCcc
Q 047447 3 KSLQSIEISNCSILKRFLE------IP------SCNIDGGIGIERLAS-------CKLVLEKCLSLQSLPSSLCMFKSLT 63 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~------~~------~~l~l~~~~l~~l~~-------~~L~l~~~~~~~~~~~~~~~l~~L~ 63 (150)
+.++.++++.+.+.+.+|. .+ ..+++++|.++.+|. ++|++++|.+. .+|..+..+++|+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 4556666666665555443 11 114444444444333 45555554332 4444444455555
Q ss_pred EEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcc
Q 047447 64 SLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKR 121 (150)
Q Consensus 64 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~ 121 (150)
+|++++|.+.+ +| .+..+++|+.+++++|.++.++. .+..+++|+++++++|.+.+
T Consensus 97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 55665555444 22 34555555666665555554433 44555556666665555544
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=1.2e-13 Score=98.53 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=102.8
Q ss_pred CCCcEEecccCCCccccc-----------cCCccccCCCcCcccc-------------cc-cceecccccCCCcCccc--
Q 047447 3 KSLQSIEISNCSILKRFL-----------EIPSCNIDGGIGIERL-------------AS-CKLVLEKCLSLQSLPSS-- 55 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p-----------~~~~~l~l~~~~l~~l-------------~~-~~L~l~~~~~~~~~~~~-- 55 (150)
+.|++|+|++|.+.+..+ ..+..+++++|.++.. +. ++|++++|.+....+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 359999999988655322 1344488888888753 22 78999998765555443
Q ss_pred --ccCC-CCccEEEeecCcccCCCchhhc----C-cCcCceEEecCCCCC-----ccchhhcCCC-CCCEEEccCCcCcc
Q 047447 56 --LCMF-KSLTSLEIIDCQNFKILPYELG----N-LKALETLIVDGTLIR-----EVPESLGQLS-SLKILVLTNNGLKR 121 (150)
Q Consensus 56 --~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~l~l~~n~l~-----~l~~~~~~~~-~L~~l~l~~n~i~~ 121 (150)
+..+ ++|++|++++|.+.+..+..+. . ..+|+.|++++|.++ .++..+...+ +|++|++++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3444 7999999999998777665433 3 358999999999887 3344555665 89999999999887
Q ss_pred cC-c----cccCC-CCCCEEEccCCCCCC
Q 047447 122 LP-E----SLNQL-SSLKRLVLSDNPLKI 144 (150)
Q Consensus 122 lp-~----~~~~~-~~L~~l~l~~n~l~~ 144 (150)
.. . .+... ++|++|++++|.+..
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 43 2 34455 589999999999875
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=1.7e-12 Score=92.12 Aligned_cols=95 Identities=23% Similarity=0.199 Sum_probs=49.2
Q ss_pred cccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecC-CCCCccch-hhcCC-CCCCEEEccCCcCcccCccccCC
Q 047447 53 PSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDG-TLIREVPE-SLGQL-SSLKILVLTNNGLKRLPESLNQL 129 (150)
Q Consensus 53 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~-n~l~~l~~-~~~~~-~~L~~l~l~~n~i~~lp~~~~~~ 129 (150)
|..|..+++|++|++++|.+....+..+.....+..+++.+ +.+..++. .+..+ ..++.+++++|.|+.++......
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~ 176 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG 176 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence 34445555555555555554444433333444444555433 24444443 22222 24556666666666666555455
Q ss_pred CCCCEEEcc-CCCCCCCCC
Q 047447 130 SSLKRLVLS-DNPLKILPK 147 (150)
Q Consensus 130 ~~L~~l~l~-~n~l~~~p~ 147 (150)
.+++.+++. +|.++.+|.
T Consensus 177 ~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp EEEEEEECTTCTTCCCCCT
T ss_pred cchhHHhhccCCcccCCCH
Confidence 566666665 356666665
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.38 E-value=7.5e-14 Score=102.01 Aligned_cols=84 Identities=26% Similarity=0.289 Sum_probs=52.4
Q ss_pred CCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCcc-chh----hc-CCCCCCEEEccCCcCc-----ccCc
Q 047447 60 KSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIREV-PES----LG-QLSSLKILVLTNNGLK-----RLPE 124 (150)
Q Consensus 60 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~l-~~~----~~-~~~~L~~l~l~~n~i~-----~lp~ 124 (150)
++|++|++++|.+.+. ++..+..+++|+.+++++|.++.. +.. +. ..++|+++++++|.++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 3555555555555443 334445567777777777766532 222 22 2567777777777777 3566
Q ss_pred cccCCCCCCEEEccCCCCC
Q 047447 125 SLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 125 ~~~~~~~L~~l~l~~n~l~ 143 (150)
.+..+++|+++++++|++.
T Consensus 393 ~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHCCCCCEEECCSSSCC
T ss_pred HHHhCCCccEEECCCCCCC
Confidence 6677777888888887765
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.35 E-value=3.3e-13 Score=98.57 Aligned_cols=13 Identities=23% Similarity=0.733 Sum_probs=6.4
Q ss_pred CCcEEecccCCCc
Q 047447 4 SLQSIEISNCSIL 16 (150)
Q Consensus 4 ~L~~L~l~~~~~~ 16 (150)
+|++|++++|.+.
T Consensus 86 ~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 86 KIQKLSLQNCCLT 98 (461)
T ss_dssp CCCEEECTTSCCB
T ss_pred ceeEEEccCCCCC
Confidence 3555555555443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=1e-14 Score=95.87 Aligned_cols=101 Identities=24% Similarity=0.266 Sum_probs=86.0
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCCc
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNNG 118 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 118 (150)
++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+| .+..+++|+++++++|.
T Consensus 51 ~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 51 KHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK 126 (198)
T ss_dssp SEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE
T ss_pred CEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc
Confidence 889999976544 66 7888999999999998877 46666777889999999999998876 57788899999999999
Q ss_pred CcccCc--cccCCCCCCEEEccCCCCC
Q 047447 119 LKRLPE--SLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 119 i~~lp~--~~~~~~~L~~l~l~~n~l~ 143 (150)
++.++. .+..+++|+++++++|++.
T Consensus 127 i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 127 ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 998654 6888999999999999875
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1e-12 Score=94.22 Aligned_cols=141 Identities=17% Similarity=0.065 Sum_probs=102.0
Q ss_pred CCCcEEecccCCCcccc-----------ccCCccccCCCcCcccc---------cc-cceecccccCCCcCcccc-----
Q 047447 3 KSLQSIEISNCSILKRF-----------LEIPSCNIDGGIGIERL---------AS-CKLVLEKCLSLQSLPSSL----- 56 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~-----------p~~~~~l~l~~~~l~~l---------~~-~~L~l~~~~~~~~~~~~~----- 56 (150)
+.|++|+|++|.+.... +..+..+++++|.++.. +. +.|++++|.+...-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57889999998865421 12333488888887631 11 789999986644322222
Q ss_pred cCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCcc-----c
Q 047447 57 CMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKR-----L 122 (150)
Q Consensus 57 ~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~-----l 122 (150)
...++|++|++++|.+... ++..+...++|+.|++++|.++. +...+...++|+.|++++|.|++ +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2467899999999987653 34455778899999999998873 34566778899999999999985 3
Q ss_pred CccccCCCCCCEEEccCCCCC
Q 047447 123 PESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 123 p~~~~~~~~L~~l~l~~n~l~ 143 (150)
+..+...++|++|++++|.|.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 344566788999999999886
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=2.7e-11 Score=85.68 Aligned_cols=83 Identities=20% Similarity=0.089 Sum_probs=69.3
Q ss_pred cceeccc-ccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccchhhcCCCCCCEEEccCC
Q 047447 39 CKLVLEK-CLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPESLGQLSSLKILVLTNN 117 (150)
Q Consensus 39 ~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n 117 (150)
++|++++ |.+.+..+..|..+++|++|++++|.+.+..|..|..+++|+.|++++|.++.+|+.......|+.|++.+|
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence 5889986 555445557789999999999999999998888899999999999999999988875433334999999999
Q ss_pred cCcc
Q 047447 118 GLKR 121 (150)
Q Consensus 118 ~i~~ 121 (150)
.+..
T Consensus 114 ~~~c 117 (347)
T 2ifg_A 114 PLHC 117 (347)
T ss_dssp CCCC
T ss_pred CccC
Confidence 9873
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=9.6e-10 Score=77.30 Aligned_cols=87 Identities=14% Similarity=0.242 Sum_probs=73.3
Q ss_pred CCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCC-EEEccCCcCcccC-ccccCCCCCCEE
Q 047447 59 FKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLK-ILVLTNNGLKRLP-ESLNQLSSLKRL 135 (150)
Q Consensus 59 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~-~l~l~~n~i~~lp-~~~~~~~~L~~l 135 (150)
+++|+.+++++|.+....+..|.++.+|+.+++.+| +..+++ ++..+.+|+ .+.+.+ .++.++ ..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 778999999988877776778999999999999887 777765 678999999 999987 777765 568899999999
Q ss_pred EccCCCCCCCCC
Q 047447 136 VLSDNPLKILPK 147 (150)
Q Consensus 136 ~l~~n~l~~~p~ 147 (150)
++.+|.++.++.
T Consensus 303 ~l~~n~i~~I~~ 314 (329)
T 3sb4_A 303 LATGDKITTLGD 314 (329)
T ss_dssp EECSSCCCEECT
T ss_pred EeCCCccCccch
Confidence 999998887766
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.01 E-value=3.8e-10 Score=84.74 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=35.6
Q ss_pred CchhhcCcCcCceEEecCCCCCc--cchhhcCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEcc
Q 047447 76 LPYELGNLKALETLIVDGTLIRE--VPESLGQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLS 138 (150)
Q Consensus 76 ~~~~~~~l~~L~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~ 138 (150)
+|..+..+++|+.|++++|.++. +...+..+++|+.|+++ +.+.+ ++.....+++|++|+++
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 34445556667777777666542 22334666677777766 33333 33334556777777777
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.99 E-value=1.8e-10 Score=86.51 Aligned_cols=77 Identities=18% Similarity=0.038 Sum_probs=38.9
Q ss_pred cceecccccCCCc----CcccccCCCCccEEEeecCcccC----CCchhhcCcCcCceEEecCCCCCccchhhcCCCCCC
Q 047447 39 CKLVLEKCLSLQS----LPSSLCMFKSLTSLEIIDCQNFK----ILPYELGNLKALETLIVDGTLIREVPESLGQLSSLK 110 (150)
Q Consensus 39 ~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~~~L~ 110 (150)
++|++++|.+... ++.....+++|++|++++|.+.+ .++..+..+++|+.|++++|.+..++..+..+++|+
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~ 246 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE 246 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCC
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHH
Confidence 5566666543322 22223345566666666655542 222333455666666666665555444444455555
Q ss_pred EEEcc
Q 047447 111 ILVLT 115 (150)
Q Consensus 111 ~l~l~ 115 (150)
+++++
T Consensus 247 ~L~l~ 251 (592)
T 3ogk_B 247 EFCGG 251 (592)
T ss_dssp EEEEC
T ss_pred hhccc
Confidence 55544
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=6.3e-09 Score=73.12 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=79.0
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhcCcCcCc-eEEecCCCCCccch-hhcCCCCCCEEEccC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALE-TLIVDGTLIREVPE-SLGQLSSLKILVLTN 116 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~ 116 (150)
+.+++++|++...-...|.++.+|+.+++.+| +....+..|.++.+|+ .+++.+ .++.+++ ++..|++|+.+++..
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 56777775544333456889999999999986 6655567899999999 999988 7777764 789999999999999
Q ss_pred CcCcccCc-cccCCCCCCEEEc
Q 047447 117 NGLKRLPE-SLNQLSSLKRLVL 137 (150)
Q Consensus 117 n~i~~lp~-~~~~~~~L~~l~l 137 (150)
+.++.++. .|.++++|+.++.
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEEC
T ss_pred CccCccchhhhcCCcchhhhcc
Confidence 99999765 5899999998863
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=2.1e-10 Score=82.16 Aligned_cols=119 Identities=18% Similarity=0.089 Sum_probs=89.4
Q ss_pred CCCcEEecccCCCccccccCC-------ccccCCCcCcccc-------------cc-cceecccccCCC----cCccccc
Q 047447 3 KSLQSIEISNCSILKRFLEIP-------SCNIDGGIGIERL-------------AS-CKLVLEKCLSLQ----SLPSSLC 57 (150)
Q Consensus 3 ~~L~~L~l~~~~~~~~~p~~~-------~~l~l~~~~l~~l-------------~~-~~L~l~~~~~~~----~~~~~~~ 57 (150)
+.|++|+|++|.+.......+ ..+++++|.++.. +. ++|++++|.+.. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 589999999998755322222 2288999988631 11 789999986543 3445557
Q ss_pred CCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCcc
Q 047447 58 MFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKR 121 (150)
Q Consensus 58 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~ 121 (150)
..++|++|++++|.+... ++..+...++|+.|++++|.++. +...+...++|+++++++|.|++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 789999999999987653 34556778899999999999973 34456678899999999999986
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=3.7e-07 Score=66.02 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=64.1
Q ss_pred cccccCCCCccEEEeecCccc-----CCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-cc
Q 047447 53 PSSLCMFKSLTSLEIIDCQNF-----KILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ES 125 (150)
Q Consensus 53 ~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~ 125 (150)
...|.++++|+.+++.++... ...+..|.++++|+.+.+.+ .++.+.. ++..|.+|+.+.+..+ ++.+. ..
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 345667788888888775543 23345677888888888874 4666654 6678888888888544 66654 45
Q ss_pred ccCCCCCCEEEccCCCCCCCCC
Q 047447 126 LNQLSSLKRLVLSDNPLKILPK 147 (150)
Q Consensus 126 ~~~~~~L~~l~l~~n~l~~~p~ 147 (150)
|.++ +|+.+++.+|.+..++.
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCC
T ss_pred CCCC-CCCEEEEcCCCCccccc
Confidence 7777 89999998887766554
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.71 E-value=3.4e-09 Score=79.58 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=12.7
Q ss_pred CCCCcEEecccCCCccc
Q 047447 2 LKSLQSIEISNCSILKR 18 (150)
Q Consensus 2 l~~L~~L~l~~~~~~~~ 18 (150)
++.|++|++++|....+
T Consensus 65 ~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFAD 81 (594)
T ss_dssp CTTCCEEEEECSCGGGG
T ss_pred CCCceEEeccCCCchhh
Confidence 67889999988765543
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1.1e-08 Score=66.30 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=76.4
Q ss_pred cceecccc-cCCC----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhc
Q 047447 39 CKLVLEKC-LSLQ----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLG 104 (150)
Q Consensus 39 ~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~ 104 (150)
++|++++| .+.. .+...+...++|++|++++|.+... +.+.+...++|+.|++++|.++. +...+.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 57788886 4432 2344556678899999999887543 33445556789999999998873 455667
Q ss_pred CCCCCCEEEc--cCCcCcc-----cCccccCCCCCCEEEccCCCCC
Q 047447 105 QLSSLKILVL--TNNGLKR-----LPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 105 ~~~~L~~l~l--~~n~i~~-----lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
..++|++|++ ++|.|+. +...+...++|++|++++|.+.
T Consensus 119 ~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 119 SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 7888999999 8888886 3445566788999999988763
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.61 E-value=8.4e-09 Score=77.46 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=23.0
Q ss_pred cCCCCCCEEEccCCcCcc--cCccccCCCCCCEEEccCC
Q 047447 104 GQLSSLKILVLTNNGLKR--LPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 104 ~~~~~L~~l~l~~n~i~~--lp~~~~~~~~L~~l~l~~n 140 (150)
..+++|++|++++|.+++ ++..+..+++|+.|++++|
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 355667777777776554 2333456677777777665
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=9.4e-08 Score=65.42 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=57.8
Q ss_pred cCCCCccEEEeecCcccC--CCchhhcCcCcCceEEecCCCCCccch--hhcCCCCCCEEEccCCcCcc-cCc-------
Q 047447 57 CMFKSLTSLEIIDCQNFK--ILPYELGNLKALETLIVDGTLIREVPE--SLGQLSSLKILVLTNNGLKR-LPE------- 124 (150)
Q Consensus 57 ~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~i~~-lp~------- 124 (150)
..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.++.+.. .+..+ .|++|++.+|++.+ +|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 357888889999888877 345666788888999999888886532 23333 88888888888876 542
Q ss_pred cccCCCCCCEEE
Q 047447 125 SLNQLSSLKRLV 136 (150)
Q Consensus 125 ~~~~~~~L~~l~ 136 (150)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 256678888775
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.48 E-value=2.1e-07 Score=66.44 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=60.5
Q ss_pred cceecccccCCCcCccccc--CCCCccEEEeecC--cccCC-----Cchhh--cCcCcCceEEecCCCCCc-cchhh---
Q 047447 39 CKLVLEKCLSLQSLPSSLC--MFKSLTSLEIIDC--QNFKI-----LPYEL--GNLKALETLIVDGTLIRE-VPESL--- 103 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~--~~~~~-----~~~~~--~~l~~L~~l~l~~n~l~~-l~~~~--- 103 (150)
+.|++..|.+.......+. .+++|++|+++.+ ...+. +...+ ..+++|+.|++.+|.+.. .+..+
T Consensus 196 ~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a 275 (362)
T 2ra8_A 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275 (362)
T ss_dssp SEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC
T ss_pred cEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC
Confidence 5666665543322222222 5778888877532 11111 11112 246778888888877652 22222
Q ss_pred cCCCCCCEEEccCCcCcc-----cCccccCCCCCCEEEccCCCCC
Q 047447 104 GQLSSLKILVLTNNGLKR-----LPESLNQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 104 ~~~~~L~~l~l~~n~i~~-----lp~~~~~~~~L~~l~l~~n~l~ 143 (150)
..+++|+.|+++.|.+++ ++..+..+++|+.|++++|.+.
T Consensus 276 ~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 356778888888887776 3344456678888888887764
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=4.3e-07 Score=58.31 Aligned_cols=80 Identities=23% Similarity=0.241 Sum_probs=34.2
Q ss_pred CccEEEeecCcccCCCchhhcCcCcCceEEecCCC-CCc-cchhhcCC----CCCCEEEccCCc-Ccc-cCccccCCCCC
Q 047447 61 SLTSLEIIDCQNFKILPYELGNLKALETLIVDGTL-IRE-VPESLGQL----SSLKILVLTNNG-LKR-LPESLNQLSSL 132 (150)
Q Consensus 61 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~-l~~~~~~~----~~L~~l~l~~n~-i~~-lp~~~~~~~~L 132 (150)
.|+.||+++|.++..--..+..+++|+.|++++|. ++. --..+..+ ++|++|++++|. |++ --..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555554433322333445555555555552 331 11222221 245555555543 444 11223444555
Q ss_pred CEEEccCC
Q 047447 133 KRLVLSDN 140 (150)
Q Consensus 133 ~~l~l~~n 140 (150)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=3e-07 Score=59.57 Aligned_cols=91 Identities=20% Similarity=0.141 Sum_probs=72.1
Q ss_pred cccccCCCCccEEEeecC-cccCC----CchhhcCcCcCceEEecCCCCCc-----cchhhcCCCCCCEEEccCCcCcc-
Q 047447 53 PSSLCMFKSLTSLEIIDC-QNFKI----LPYELGNLKALETLIVDGTLIRE-----VPESLGQLSSLKILVLTNNGLKR- 121 (150)
Q Consensus 53 ~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~i~~- 121 (150)
...+...+.|++|++++| .+... +...+...++|+.|++++|.++. +...+...++|++|++++|.|++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344567889999999998 66543 34456677899999999999873 34556677899999999999986
Q ss_pred ----cCccccCCCCCCEEEc--cCCCCC
Q 047447 122 ----LPESLNQLSSLKRLVL--SDNPLK 143 (150)
Q Consensus 122 ----lp~~~~~~~~L~~l~l--~~n~l~ 143 (150)
+...+...++|++|++ ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4556777889999999 889875
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=7.5e-06 Score=59.19 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=52.0
Q ss_pred CCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC-----ccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCC
Q 047447 60 KSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR-----EVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSL 132 (150)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-----~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L 132 (150)
.+|+.+.+. +.+.......|.++++|+.+.+.++.+. .++. .+..|++|+.+.+. +.++.++. .|.++++|
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 455555553 2444444556777777888877776554 3443 56777788888777 34666543 47777888
Q ss_pred CEEEccCCCCCCC
Q 047447 133 KRLVLSDNPLKIL 145 (150)
Q Consensus 133 ~~l~l~~n~l~~~ 145 (150)
+.+.+..+ ++.+
T Consensus 326 ~~l~lp~~-l~~I 337 (401)
T 4fdw_A 326 TQLTIPAN-VTQI 337 (401)
T ss_dssp CEEEECTT-CCEE
T ss_pred cEEEECcc-ccEE
Confidence 88887544 4443
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=1.1e-06 Score=56.44 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=62.1
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCccc-CCCchhhcCc----CcCceEEecCCC-CCc-cchhhcCCCCCCE
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNF-KILPYELGNL----KALETLIVDGTL-IRE-VPESLGQLSSLKI 111 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l----~~L~~l~l~~n~-l~~-l~~~~~~~~~L~~ 111 (150)
+.||+++|.+...--..+..+++|++|++++|... ..--..+..+ ++|+.|++++|. +++ --..+..+++|+.
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 78999999855544455788999999999999743 3322344443 479999999984 773 2345668999999
Q ss_pred EEccCCc-Ccc
Q 047447 112 LVLTNNG-LKR 121 (150)
Q Consensus 112 l~l~~n~-i~~ 121 (150)
|++++|. +++
T Consensus 144 L~L~~c~~Itd 154 (176)
T 3e4g_A 144 LFLSDLPGVKE 154 (176)
T ss_dssp EEEESCTTCCC
T ss_pred EECCCCCCCCc
Confidence 9999987 775
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=2.7e-06 Score=58.20 Aligned_cols=65 Identities=26% Similarity=0.352 Sum_probs=53.0
Q ss_pred cCcCcCceEEecCCCCCccc---hhhcCCCCCCEEEccCCcCcccCccccCCC--CCCEEEccCCCCC-CCC
Q 047447 81 GNLKALETLIVDGTLIREVP---ESLGQLSSLKILVLTNNGLKRLPESLNQLS--SLKRLVLSDNPLK-ILP 146 (150)
Q Consensus 81 ~~l~~L~~l~l~~n~l~~l~---~~~~~~~~L~~l~l~~n~i~~lp~~~~~~~--~L~~l~l~~n~l~-~~p 146 (150)
..++.|+.|++++|.++.++ ..+..+++|+.|++++|.|+++ ..+..++ +|+.|++++|++. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 45789999999999998654 4567899999999999999987 3344444 8999999999987 454
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.85 E-value=2.4e-05 Score=55.86 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=68.3
Q ss_pred cceecccccCCCcCcccccCCCCccEEEeecCcccCCCchhhc--CcCcCceEEecC--CC------CCccchhh--cCC
Q 047447 39 CKLVLEKCLSLQSLPSSLCMFKSLTSLEIIDCQNFKILPYELG--NLKALETLIVDG--TL------IREVPESL--GQL 106 (150)
Q Consensus 39 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~--n~------l~~l~~~~--~~~ 106 (150)
+.|.+++|... .++. + .+++|++|++..|.+.......+. .+++|+.|+++. +. +..+.+.+ ..+
T Consensus 175 ~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~ 251 (362)
T 2ra8_A 175 NNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251 (362)
T ss_dssp CEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTC
T ss_pred cEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCC
Confidence 78888886322 3333 3 378999999988776544333333 689999999853 11 22222333 357
Q ss_pred CCCCEEEccCCcCcc-cCccc---cCCCCCCEEEccCCCCC
Q 047447 107 SSLKILVLTNNGLKR-LPESL---NQLSSLKRLVLSDNPLK 143 (150)
Q Consensus 107 ~~L~~l~l~~n~i~~-lp~~~---~~~~~L~~l~l~~n~l~ 143 (150)
++|++|.+.+|.+.+ .+..+ ..+++|++|+++.|.+.
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 899999999999875 32222 35788999999999875
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.54 E-value=0.00022 Score=43.35 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=38.5
Q ss_pred cEEEeecCccc-CCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCc
Q 047447 63 TSLEIIDCQNF-KILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLK 120 (150)
Q Consensus 63 ~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~ 120 (150)
..++.+++.+. ..+|.. -..+++.|++++|.++.++. .+..+++|+.+++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35677766554 245532 22358888888888888876 4577888888888888765
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.37 E-value=0.00027 Score=46.11 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=58.7
Q ss_pred cceecccccCCC-----cCcccccCCCCccEEEeecCcccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhc
Q 047447 39 CKLVLEKCLSLQ-----SLPSSLCMFKSLTSLEIIDCQNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLG 104 (150)
Q Consensus 39 ~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~ 104 (150)
+.|++++++.++ .+-..+..-+.|+.|++++|.+... +.+.+..-.+|+.|++++|.++ .+.+.+.
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 456676642222 2233445556777777777776533 2333444466777888777776 2344555
Q ss_pred CCCCCCEEEccCC---cCcc-----cCccccCCCCCCEEEccCCC
Q 047447 105 QLSSLKILVLTNN---GLKR-----LPESLNQLSSLKRLVLSDNP 141 (150)
Q Consensus 105 ~~~~L~~l~l~~n---~i~~-----lp~~~~~~~~L~~l~l~~n~ 141 (150)
.-+.|++|+++++ .+.. +.+.+..-+.|+.++++.|.
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 6666777777654 3332 22334445667777776554
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.30 E-value=0.0018 Score=46.44 Aligned_cols=81 Identities=11% Similarity=0.262 Sum_probs=34.3
Q ss_pred ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCCC
Q 047447 56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSLK 133 (150)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L~ 133 (150)
|.++..|+.+.+.. .+.......|.++.+|+.+.+.++ ++.+.. ++..|.+|+.+.+..+ ++.+.. +|.++++|+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 34444555544432 222222234444555555555432 333322 3444555555554322 333322 244455555
Q ss_pred EEEccC
Q 047447 134 RLVLSD 139 (150)
Q Consensus 134 ~l~l~~ 139 (150)
.+++.+
T Consensus 361 ~i~~~~ 366 (394)
T 4gt6_A 361 NIEYSG 366 (394)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 554443
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.25 E-value=0.0022 Score=45.95 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=23.0
Q ss_pred hcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCCEEEc
Q 047447 80 LGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLKRLVL 137 (150)
Q Consensus 80 ~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~~l~l 137 (150)
|..+..|+.+.+. +.+..++. ++..+.+|+.+.+..+ ++.+. .+|.++++|+.+.+
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 4444444444443 22333332 3344444444444322 33322 22444444444444
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00038 Score=45.39 Aligned_cols=84 Identities=21% Similarity=0.129 Sum_probs=55.5
Q ss_pred cCCCCccEEEeecC-cccCC----CchhhcCcCcCceEEecCCCCC-----ccchhhcCCCCCCEEEccCCcCcc-----
Q 047447 57 CMFKSLTSLEIIDC-QNFKI----LPYELGNLKALETLIVDGTLIR-----EVPESLGQLSSLKILVLTNNGLKR----- 121 (150)
Q Consensus 57 ~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l~~n~i~~----- 121 (150)
..-+.|++|+++++ .+... +.+.+..-.+|+.|++++|.++ .+.+.+..-+.|++|+++.|.|.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567888888775 43221 3344555567888888888776 244556666778888888888875
Q ss_pred cCccccCCCCCCEEEccCC
Q 047447 122 LPESLNQLSSLKRLVLSDN 140 (150)
Q Consensus 122 lp~~~~~~~~L~~l~l~~n 140 (150)
+.+.+..-+.|+.|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2344555567888888754
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.09 E-value=0.0013 Score=39.96 Aligned_cols=55 Identities=24% Similarity=0.182 Sum_probs=40.4
Q ss_pred ceecccccCCC--cCcccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCC
Q 047447 40 KLVLEKCLSLQ--SLPSSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIR 97 (150)
Q Consensus 40 ~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~ 97 (150)
.++.+++ .++ .+|..+ -.++++|++++|.+....+..|..+++|+.+++.+|.+.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4556663 344 666432 246889999998888877778888889999999998775
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.06 E-value=0.0024 Score=45.42 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=51.7
Q ss_pred ccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCCC
Q 047447 56 LCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSLK 133 (150)
Q Consensus 56 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L~ 133 (150)
|.++.+++.+.+.. .+.......|.++.+|+.+.+.++.++.+.. ++..|.+|+.+.+..+ ++.+. .+|.++++|+
T Consensus 259 F~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 44455666666643 3333333456777888888887777777655 6677888888887643 55544 3467777777
Q ss_pred EEEcc
Q 047447 134 RLVLS 138 (150)
Q Consensus 134 ~l~l~ 138 (150)
.+.+.
T Consensus 337 ~i~ip 341 (379)
T 4h09_A 337 TISYP 341 (379)
T ss_dssp CCCCC
T ss_pred EEEEC
Confidence 66654
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.05 E-value=0.0035 Score=44.89 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=59.0
Q ss_pred cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCC
Q 047447 55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSL 132 (150)
Q Consensus 55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L 132 (150)
.|..+.+|+.+.+.. .+...-...|..+.+|+.+++.++ ++.+.. ++.+|.+|+.+++..+ ++.+. .+|.++++|
T Consensus 292 ~F~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccccccc-ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 456778888888865 344444456788888888888643 666654 6778888888888765 66654 457888888
Q ss_pred CEEEccCC
Q 047447 133 KRLVLSDN 140 (150)
Q Consensus 133 ~~l~l~~n 140 (150)
+.+++..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 88887643
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.80 E-value=0.0034 Score=44.96 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=56.4
Q ss_pred cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccC-ccccCCCCC
Q 047447 55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLP-ESLNQLSSL 132 (150)
Q Consensus 55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp-~~~~~~~~L 132 (150)
.|..+..++.+......+ ....|..+.+|+.+.+.++ ++.+.. ++..+.+|+.+++..+ ++.+. .+|.++++|
T Consensus 271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 455667777776654321 1235667888888888654 555654 6778888888888643 66654 457888888
Q ss_pred CEEEccCCCCCCCC
Q 047447 133 KRLVLSDNPLKILP 146 (150)
Q Consensus 133 ~~l~l~~n~l~~~p 146 (150)
+.+.+..+ ++.++
T Consensus 346 ~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 346 SNINFPLS-LRKIG 358 (394)
T ss_dssp CEECCCTT-CCEEC
T ss_pred CEEEECcc-ccEeh
Confidence 88887655 44443
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.55 E-value=0.02 Score=40.57 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=59.8
Q ss_pred cccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecCCCCCccch-hhcCCCCCCEEEccCCcCcccCc-cccCCCCC
Q 047447 55 SLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDGTLIREVPE-SLGQLSSLKILVLTNNGLKRLPE-SLNQLSSL 132 (150)
Q Consensus 55 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~i~~lp~-~~~~~~~L 132 (150)
.+..+..|+.+.+.. .+...-...|..+..++.+.+.. .+..++. .+..+.+|+.+.+..+.++.+++ .|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~-~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPK-NVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECT-TCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCC-CccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 345566777777765 33333345677788888888865 3555554 66889999999998888888654 58889999
Q ss_pred CEEEccCC
Q 047447 133 KRLVLSDN 140 (150)
Q Consensus 133 ~~l~l~~n 140 (150)
+.+.+..+
T Consensus 313 ~~i~lp~~ 320 (379)
T 4h09_A 313 SSVTLPTA 320 (379)
T ss_dssp CEEECCTT
T ss_pred CEEEcCcc
Confidence 99988543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.06 E-value=26 Score=19.67 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=25.7
Q ss_pred ccccCCCCccEEEeecCcccCCCchhhcCcCcCceEEecC
Q 047447 54 SSLCMFKSLTSLEIIDCQNFKILPYELGNLKALETLIVDG 93 (150)
Q Consensus 54 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 93 (150)
..|.++.+|+.+.+-. .+...-...|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 4566777777777764 44444445677777777777754
Done!