Query 047448
Match_columns 249
No_of_seqs 136 out of 206
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2759 Vacuolar H+-ATPase V1 100.0 1.4E-60 3.1E-65 445.4 17.0 234 1-241 40-440 (442)
2 cd00256 VATPase_H VATPase_H, r 100.0 1.9E-60 4.1E-65 452.9 18.1 233 1-241 31-427 (429)
3 PF03224 V-ATPase_H_N: V-ATPas 100.0 7.4E-33 1.6E-37 253.8 2.9 174 2-179 32-219 (312)
4 PF11698 V-ATPase_H_C: V-ATPas 100.0 5.2E-30 1.1E-34 205.8 3.3 73 160-241 45-117 (119)
5 COG5231 VMA13 Vacuolar H+-ATPa 99.9 2.6E-22 5.5E-27 184.0 5.7 58 183-240 372-429 (432)
6 cd00020 ARM Armadillo/beta-cat 97.7 0.00025 5.4E-09 54.0 7.8 110 115-237 8-118 (120)
7 PF04826 Arm_2: Armadillo-like 96.8 0.034 7.4E-07 50.4 13.2 140 27-179 14-155 (254)
8 PLN03200 cellulose synthase-in 96.2 0.32 6.9E-06 55.3 18.7 206 9-240 261-476 (2102)
9 PLN03200 cellulose synthase-in 96.2 0.073 1.6E-06 60.3 13.5 192 26-239 363-559 (2102)
10 PF05804 KAP: Kinesin-associat 96.0 0.052 1.1E-06 55.8 10.8 127 110-245 527-656 (708)
11 KOG2160 Armadillo/beta-catenin 95.9 0.1 2.2E-06 49.3 11.4 145 81-240 137-283 (342)
12 PF05804 KAP: Kinesin-associat 95.4 0.28 6E-06 50.7 12.9 169 39-231 262-433 (708)
13 PF00514 Arm: Armadillo/beta-c 95.4 0.031 6.7E-07 36.0 4.1 38 200-237 2-39 (41)
14 cd00020 ARM Armadillo/beta-cat 95.3 0.053 1.1E-06 40.9 5.9 78 154-241 3-80 (120)
15 PF02985 HEAT: HEAT repeat; I 95.1 0.031 6.8E-07 34.1 3.3 27 213-239 3-29 (31)
16 PF04826 Arm_2: Armadillo-like 93.6 0.1 2.2E-06 47.3 4.5 76 152-237 6-81 (254)
17 KOG4224 Armadillo repeat prote 93.4 0.21 4.6E-06 48.0 6.5 138 88-244 146-285 (550)
18 PF10508 Proteasom_PSMB: Prote 93.2 0.93 2E-05 44.7 11.0 134 81-235 132-268 (503)
19 PF10508 Proteasom_PSMB: Prote 92.7 3.3 7.2E-05 40.8 14.1 184 30-241 43-233 (503)
20 smart00185 ARM Armadillo/beta- 92.2 0.32 6.9E-06 30.2 4.2 38 200-237 2-39 (41)
21 KOG0166 Karyopherin (importin) 92.1 0.52 1.1E-05 46.8 7.5 156 81-243 123-312 (514)
22 PF01602 Adaptin_N: Adaptin N 92.0 3.9 8.5E-05 39.4 13.4 184 29-241 98-298 (526)
23 KOG2160 Armadillo/beta-catenin 90.6 0.88 1.9E-05 43.1 7.0 103 132-244 98-201 (342)
24 PF07539 DRIM: Down-regulated 89.1 0.72 1.6E-05 38.2 4.7 50 198-247 5-56 (141)
25 COG5064 SRP1 Karyopherin (impo 89.0 2.8 6.1E-05 40.3 9.0 151 83-241 130-316 (526)
26 KOG1062 Vesicle coat complex A 88.3 4.9 0.00011 42.1 10.8 170 42-237 195-377 (866)
27 PF01602 Adaptin_N: Adaptin N 86.0 34 0.00073 32.9 15.7 131 81-242 353-486 (526)
28 PF08167 RIX1: rRNA processing 85.6 6.9 0.00015 32.8 8.8 138 90-241 3-145 (165)
29 PF13646 HEAT_2: HEAT repeats; 85.5 0.97 2.1E-05 32.7 3.2 27 211-237 32-58 (88)
30 PF13513 HEAT_EZ: HEAT-like re 84.5 1.2 2.5E-05 30.0 3.0 48 188-237 7-55 (55)
31 KOG2171 Karyopherin (importin) 84.4 26 0.00055 38.1 14.0 62 31-98 208-279 (1075)
32 PF09450 DUF2019: Domain of un 83.9 0.74 1.6E-05 36.6 2.0 49 183-231 15-68 (106)
33 PF12717 Cnd1: non-SMC mitotic 82.1 2.7 5.9E-05 35.5 4.9 47 186-240 9-55 (178)
34 KOG2734 Uncharacterized conser 79.6 16 0.00034 36.2 9.6 212 14-242 106-349 (536)
35 PF12348 CLASP_N: CLASP N term 79.3 39 0.00085 28.9 12.5 138 81-241 66-208 (228)
36 PF12348 CLASP_N: CLASP N term 79.0 16 0.00035 31.3 8.9 141 81-241 20-162 (228)
37 PTZ00429 beta-adaptin; Provisi 77.2 77 0.0017 33.3 14.5 46 190-241 464-509 (746)
38 PF12717 Cnd1: non-SMC mitotic 74.2 12 0.00027 31.4 6.7 85 41-148 3-94 (178)
39 PRK09687 putative lyase; Provi 71.7 39 0.00085 30.8 9.8 62 158-238 159-220 (280)
40 PF08045 CDC14: Cell division 71.7 16 0.00035 33.4 7.1 84 137-230 111-198 (257)
41 PTZ00429 beta-adaptin; Provisi 70.8 74 0.0016 33.4 12.5 128 81-238 153-284 (746)
42 PF00173 Cyt-b5: Cytochrome b5 69.0 1.7 3.6E-05 31.1 0.1 29 189-217 24-52 (76)
43 KOG0166 Karyopherin (importin) 66.9 1.2E+02 0.0025 30.6 12.4 193 26-241 153-353 (514)
44 KOG4224 Armadillo repeat prote 64.3 1.3E+02 0.0029 29.4 11.8 197 34-241 175-407 (550)
45 PF00514 Arm: Armadillo/beta-c 64.0 6.6 0.00014 24.8 2.2 24 148-171 2-25 (41)
46 PF05536 Neurochondrin: Neuroc 62.4 21 0.00046 35.8 6.6 99 131-241 71-170 (543)
47 KOG1060 Vesicle coat complex A 61.4 1.1E+02 0.0024 32.6 11.4 150 70-241 351-535 (968)
48 KOG1222 Kinesin associated pro 60.8 73 0.0016 32.3 9.6 122 113-244 546-669 (791)
49 cd00183 TFIIS_I N-terminal dom 59.7 28 0.0006 25.5 5.2 52 187-238 21-72 (76)
50 PF06685 DUF1186: Protein of u 58.9 45 0.00097 30.3 7.4 81 45-136 88-172 (249)
51 PF08324 PUL: PUL domain; Int 58.4 41 0.0009 29.7 7.1 98 135-241 128-233 (268)
52 KOG4199 Uncharacterized conser 58.4 1.8E+02 0.004 28.2 14.3 98 135-241 305-405 (461)
53 KOG1242 Protein containing ada 54.2 2.6E+02 0.0056 28.6 13.1 190 18-238 243-443 (569)
54 PF12755 Vac14_Fab1_bd: Vacuol 54.0 15 0.00033 28.3 3.1 30 211-240 28-57 (97)
55 COG5064 SRP1 Karyopherin (impo 53.2 38 0.00082 32.8 6.1 114 27-149 329-446 (526)
56 PF05536 Neurochondrin: Neuroc 51.8 1.3E+02 0.0028 30.3 10.0 40 132-171 114-153 (543)
57 KOG1058 Vesicle coat complex C 50.9 1.4E+02 0.0031 31.7 10.2 94 4-98 26-129 (948)
58 KOG0537 Cytochrome b5 [Energy 50.4 9 0.00019 31.1 1.4 26 189-214 29-54 (124)
59 PRK09687 putative lyase; Provi 50.3 68 0.0015 29.2 7.3 27 211-237 160-186 (280)
60 KOG1991 Nuclear transport rece 48.9 3E+02 0.0065 30.0 12.3 58 183-243 477-536 (1010)
61 KOG3036 Protein involved in ce 48.4 1.9E+02 0.0041 26.8 9.6 136 12-156 110-257 (293)
62 KOG2038 CAATT-binding transcri 48.3 1.7E+02 0.0037 31.2 10.2 148 22-179 297-518 (988)
63 KOG1824 TATA-binding protein-i 48.0 54 0.0012 35.5 6.8 179 46-244 153-367 (1233)
64 PF06025 DUF913: Domain of Unk 47.8 68 0.0015 30.7 7.1 167 39-224 73-261 (379)
65 KOG1943 Beta-tubulin folding c 47.8 2.2E+02 0.0048 31.3 11.3 33 211-243 342-374 (1133)
66 smart00509 TFS2N Domain in the 47.1 57 0.0012 23.9 5.1 51 188-238 20-70 (75)
67 PF04078 Rcd1: Cell differenti 47.0 1.1E+02 0.0025 28.0 8.0 136 12-156 81-228 (262)
68 KOG3036 Protein involved in ce 46.9 2.4E+02 0.0052 26.1 11.5 144 41-240 94-248 (293)
69 KOG0946 ER-Golgi vesicle-tethe 44.2 1.3E+02 0.0029 32.0 8.8 134 25-169 61-219 (970)
70 KOG0536 Flavohemoprotein b5+b5 43.9 9.7 0.00021 31.7 0.6 43 189-232 92-134 (145)
71 PF13646 HEAT_2: HEAT repeats; 43.0 20 0.00043 25.6 2.1 24 214-237 3-27 (88)
72 KOG1059 Vesicle coat complex A 42.2 4.5E+02 0.0098 28.0 13.3 138 81-243 194-332 (877)
73 KOG2023 Nuclear transport rece 41.9 1.1E+02 0.0025 32.0 7.8 98 132-238 104-202 (885)
74 PF10274 ParcG: Parkin co-regu 40.2 45 0.00097 29.0 4.2 27 216-242 86-112 (183)
75 KOG1048 Neural adherens juncti 39.6 56 0.0012 34.1 5.4 75 155-239 230-304 (717)
76 PF14664 RICTOR_N: Rapamycin-i 39.2 57 0.0012 31.2 5.1 56 189-244 4-59 (371)
77 COG5274 CYB5 Cytochrome b invo 38.9 7.7 0.00017 33.2 -0.7 28 189-216 74-101 (164)
78 KOG1048 Neural adherens juncti 37.0 2.3E+02 0.0051 29.7 9.3 140 81-233 532-679 (717)
79 KOG1824 TATA-binding protein-i 36.4 6.3E+02 0.014 27.9 14.9 53 191-247 842-896 (1233)
80 KOG2734 Uncharacterized conser 36.1 1.3E+02 0.0027 30.1 6.9 153 13-170 163-330 (536)
81 TIGR00277 HDIG uncharacterized 35.3 17 0.00036 25.2 0.7 14 183-196 30-43 (80)
82 KOG2090 Metalloendopeptidase f 35.2 37 0.00081 34.8 3.3 44 190-233 98-143 (704)
83 COG5181 HSH155 U2 snRNP splice 35.2 2.3E+02 0.005 29.7 8.7 167 45-238 508-674 (975)
84 PF11935 DUF3453: Domain of un 33.9 57 0.0012 29.0 4.0 44 197-240 29-73 (239)
85 PF13251 DUF4042: Domain of un 33.4 2.8E+02 0.006 23.9 8.0 114 25-148 39-176 (182)
86 PF13212 DUF4020: Domain of un 32.6 80 0.0017 27.4 4.5 44 14-57 123-166 (180)
87 PF09324 DUF1981: Domain of un 32.3 97 0.0021 23.1 4.5 36 25-60 17-52 (86)
88 PRK13800 putative oxidoreducta 31.9 6.5E+02 0.014 26.8 13.7 24 214-237 811-834 (897)
89 PF08711 Med26: TFIIS helical 31.8 1.4E+02 0.003 19.9 4.8 43 196-238 6-49 (53)
90 PF12530 DUF3730: Protein of u 31.7 3.6E+02 0.0078 23.7 12.3 114 111-240 17-152 (234)
91 PF03224 V-ATPase_H_N: V-ATPas 31.4 1.1E+02 0.0024 27.9 5.6 73 160-241 57-136 (312)
92 PF14666 RICTOR_M: Rapamycin-i 31.2 1.2E+02 0.0027 26.9 5.7 96 127-224 74-178 (226)
93 KOG1789 Endocytosis protein RM 31.1 6.3E+02 0.014 28.6 11.4 119 41-168 1740-1863(2235)
94 PF14852 Fis1_TPR_N: Fis1 N-te 30.8 38 0.00082 21.5 1.7 29 117-148 6-34 (35)
95 PF09759 Atx10homo_assoc: Spin 30.7 1.5E+02 0.0033 23.2 5.5 51 184-241 9-61 (102)
96 cd03567 VHS_GGA VHS domain fam 29.5 1.1E+02 0.0023 25.2 4.6 46 190-240 23-68 (139)
97 KOG4232 Delta 6-fatty acid des 27.4 36 0.00077 33.3 1.6 25 189-213 31-55 (430)
98 KOG0168 Putative ubiquitin fus 27.4 5.4E+02 0.012 28.0 10.1 155 5-170 277-438 (1051)
99 PLN03198 delta6-acyl-lipid des 27.0 28 0.00061 34.9 0.9 23 189-212 128-150 (526)
100 KOG1293 Proteins containing ar 26.9 2E+02 0.0043 29.9 6.8 95 137-241 397-492 (678)
101 PF04078 Rcd1: Cell differenti 26.5 3.2E+02 0.0069 25.2 7.5 98 137-241 70-170 (262)
102 PF04405 ScdA_N: Domain of Unk 25.4 44 0.00096 23.3 1.4 19 192-210 5-23 (56)
103 PF08167 RIX1: rRNA processing 25.2 3.9E+02 0.0084 22.1 7.4 79 16-98 58-144 (165)
104 PF07571 DUF1546: Protein of u 24.9 3E+02 0.0065 20.7 6.1 67 81-154 19-85 (92)
105 PF06025 DUF913: Domain of Unk 24.9 62 0.0013 31.0 2.8 39 132-170 335-373 (379)
106 PF02084 Bindin: Bindin; Inte 24.4 75 0.0016 28.6 3.0 53 189-241 127-182 (238)
107 KOG1517 Guanine nucleotide bin 24.1 5.5E+02 0.012 28.7 9.6 138 85-237 487-627 (1387)
108 KOG2757 Mannose-6-phosphate is 24.0 1.1E+02 0.0023 29.7 4.1 52 189-241 146-197 (411)
109 cd03568 VHS_STAM VHS domain fa 23.8 1.4E+02 0.0031 24.5 4.4 46 191-241 23-68 (144)
110 PF01966 HD: HD domain; Inter 23.8 75 0.0016 23.3 2.6 15 183-197 28-42 (122)
111 KOG1293 Proteins containing ar 23.5 2.3E+02 0.005 29.4 6.5 87 145-246 448-541 (678)
112 PF00790 VHS: VHS domain; Int 22.4 2E+02 0.0043 23.2 5.0 45 191-241 28-73 (140)
113 PF06371 Drf_GBD: Diaphanous G 21.9 1.2E+02 0.0026 25.0 3.6 35 135-169 134-169 (187)
114 PF08822 DUF1804: Protein of u 21.1 1.4E+02 0.0029 25.7 3.8 58 9-66 91-152 (165)
115 PF12719 Cnd3: Nuclear condens 20.6 5.1E+02 0.011 23.4 7.8 92 136-243 46-147 (298)
116 cd00197 VHS_ENTH_ANTH VHS, ENT 20.4 2.1E+02 0.0046 21.9 4.6 46 190-241 22-68 (115)
117 PF02671 PAH: Paired amphipath 20.4 1.9E+02 0.0041 18.7 3.7 39 28-66 5-44 (47)
118 cd03561 VHS VHS domain family; 20.2 1.3E+02 0.0028 24.1 3.4 44 192-241 24-68 (133)
119 PF08984 DUF1858: Domain of un 20.1 76 0.0016 21.9 1.8 19 192-210 7-25 (59)
No 1
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=100.00 E-value=1.4e-60 Score=445.43 Aligned_cols=234 Identities=34% Similarity=0.540 Sum_probs=214.3
Q ss_pred CchhhhhcCC-CHHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccC-CCCcccccc
Q 047448 1 LQLLRRYDNR-SESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSL-ASEDTYEPF 78 (249)
Q Consensus 1 l~~I~~~Dk~-~~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~-~~~~py~pf 78 (249)
+++|++||+. .++.|.+++.+++++|+.+|+|||+++.+||+|+|+|+||+|||+++++|+++|++.+. .+..+|.||
T Consensus 40 ~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~f 119 (442)
T KOG2759|consen 40 YQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSF 119 (442)
T ss_pred HHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHH
Confidence 4789999995 45699999999999999999999999999999999999999999999999999999887 577889999
Q ss_pred cC-----hHHHHHHHHHHHHHHHhhhcCCCchhhhhh-hhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhH
Q 047448 79 LS-----NWFIQEKSCKILASIVRYLKHDPFAQRCNS-LEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRS 152 (249)
Q Consensus 79 L~-----D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~-~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~ 152 (249)
++ |+|+.+++++|+|+++++|+.. + +. ....|++|| .+++.+ +++++|+++|+||||+|||+|+||.
T Consensus 120 l~ll~r~d~~iv~~~~~Ils~la~~g~~~--~---~~~e~~~~~~~l-~~~l~~-~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 120 LNLLNRQDTFIVEMSFRILSKLACFGNCK--M---ELSELDVYKGFL-KEQLQS-STNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHhcccc--c---cchHHHHHHHHH-HHHHhc-cCCCchHHHHHHHHHHHhcCcchhh
Confidence 99 9999999999999999998766 3 23 348899999 999876 4689999999999999999999999
Q ss_pred HHhhcccccchHhhh-cccc-ccchhhhH---------HH----------------------------------------
Q 047448 153 SFVQADGVKLLTPLI-SPAS-TQQSIQLA---------GA---------------------------------------- 181 (249)
Q Consensus 153 ~fw~~~gv~~L~~iL-~~~~-~~~~~Qll---------p~---------------------------------------- 181 (249)
.||..+|+..|+.++ ++.+ +|+|||++ |.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999 5544 58888876 11
Q ss_pred -------------H------------------------------------------------------------------
Q 047448 182 -------------M------------------------------------------------------------------ 182 (249)
Q Consensus 182 -------------M------------------------------------------------------------------ 182 (249)
|
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 1
Q ss_pred -----------------------------HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHH
Q 047448 183 -----------------------------LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 233 (249)
Q Consensus 183 -----------------------------~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~ 233 (249)
.++|||||||||||||||+||.+++++|||++||+||+|+||+||||||+|
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchh
Q 047448 234 IQRLFLGA 241 (249)
Q Consensus 234 ~q~~~~~~ 241 (249)
+|++|+++
T Consensus 433 vQ~lm~~~ 440 (442)
T KOG2759|consen 433 VQKLMVHN 440 (442)
T ss_pred HHHHHhhc
Confidence 99999986
No 2
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=100.00 E-value=1.9e-60 Score=452.89 Aligned_cols=233 Identities=36% Similarity=0.547 Sum_probs=210.8
Q ss_pred CchhhhhcCCCHHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC
Q 047448 1 LQLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS 80 (249)
Q Consensus 1 l~~I~~~Dk~~~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~ 80 (249)
+++|++||++ +.|.++++++|++|+++|+++|++++|+||+||||+||+|||+++|+|+++|++.+..+++||.||++
T Consensus 31 ~~~ik~~d~~--~~~~~~~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~ 108 (429)
T cd00256 31 YQFIKALEKK--RVKEEILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFN 108 (429)
T ss_pred HHHHHHHHhH--HHHHHHhcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHH
Confidence 4789999987 57888999999999999999999999999999999999999999999999999987666789999998
Q ss_pred -----hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHh
Q 047448 81 -----NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFV 155 (249)
Q Consensus 81 -----D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw 155 (249)
|+||+++||++||.|+|+|..+.+ ....+.|++|| +++++++ ++++++++|++|||+||+.++||..||
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~----~~~l~~~~~~l-~~~l~~~-~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKME----GSDLDYYFNWL-KEQLNNI-TNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccc----hhHHHHHHHHH-HHHhhcc-CCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 999999999999999999754321 23458899999 9999876 367788889999999999999999999
Q ss_pred hcccccchHhhhcccc--ccchhhhH----------------------HH------------------------------
Q 047448 156 QADGVKLLTPLISPAS--TQQSIQLA----------------------GA------------------------------ 181 (249)
Q Consensus 156 ~~~gv~~L~~iL~~~~--~~~~~Qll----------------------p~------------------------------ 181 (249)
+.+|+++|+++|+.++ .|++|+.+ |.
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 9999999999998765 37888766 00
Q ss_pred ----------H---------------------------------------------------------------------
Q 047448 182 ----------M--------------------------------------------------------------------- 182 (249)
Q Consensus 182 ----------M--------------------------------------------------------------------- 182 (249)
|
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 0
Q ss_pred --------------------------HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHH
Q 047448 183 --------------------------LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQR 236 (249)
Q Consensus 183 --------------------------~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~ 236 (249)
.++|||||||||||||||+||.+++++|||++||+||+|+|++||||||+|+||
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999
Q ss_pred Hhchh
Q 047448 237 LFLGA 241 (249)
Q Consensus 237 ~~~~~ 241 (249)
+|+||
T Consensus 423 lm~~~ 427 (429)
T cd00256 423 LMVHN 427 (429)
T ss_pred HHHhc
Confidence 99996
No 3
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.97 E-value=7.4e-33 Score=253.84 Aligned_cols=174 Identities=30% Similarity=0.503 Sum_probs=122.0
Q ss_pred chhhhhcCCCHHHHhhhhhhcchhHHHHHHHHHhhh-chhHHHHHHHHHHHHHHhcChHHHHHHHhccC-CCCccccccc
Q 047448 2 QLLRRYDNRSESHRAQLLDDDGPSYVRVFVSILRDI-YKEETVEYVLALIDEMLTANPKRARLFHDKSL-ASEDTYEPFL 79 (249)
Q Consensus 2 ~~I~~~Dk~~~e~r~~~l~~~~~~y~~~fv~LL~~~-sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~-~~~~py~pfL 79 (249)
++|++||+.++++|.++++++|+.|+++|+++|+++ +++||+||||++|+||++++|+|+++|++.++ ++..||.||+
T Consensus 32 ~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl 111 (312)
T PF03224_consen 32 SLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL 111 (312)
T ss_dssp HHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH
Confidence 689999999899999999999999999999999999 99999999999999999999999999999877 5566999999
Q ss_pred C-----hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHH
Q 047448 80 S-----NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSF 154 (249)
Q Consensus 80 ~-----D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~f 154 (249)
+ |+||+++|+++||.|++++........ ++.++.|++|| ++++++++ .+++..|++||++||+.++||..|
T Consensus 112 ~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L-~~~l~~~~--~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 112 KLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWL-SSQLSSSD--SELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp HH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHH-H-TT-HHH--H---HHHHHHHHHHHTSHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHH-HHhhcCCC--cchHHHHHHHHHHHhCcchhHHHH
Confidence 8 999999999999999999644322211 25669999999 99887753 444455999999999999999999
Q ss_pred hhcccccchHhhh------cccc-ccchhhhH
Q 047448 155 VQADGVKLLTPLI------SPAS-TQQSIQLA 179 (249)
Q Consensus 155 w~~~gv~~L~~iL------~~~~-~~~~~Qll 179 (249)
|+.+|++.|++++ +++. .|++||.+
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQAL 219 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence 9999999999999 2222 36677744
No 4
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.96 E-value=5.2e-30 Score=205.77 Aligned_cols=73 Identities=45% Similarity=0.726 Sum_probs=66.2
Q ss_pred ccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhc
Q 047448 160 VKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 160 v~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~ 239 (249)
++.|+++|..+.+. .++|||||||||||||||+||.+++++|+|++||+||+|+|++||||||+|+||+|+
T Consensus 45 lk~L~~lL~~s~d~---------~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSDDP---------TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHHHH---------HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCc---------ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 89999999655555 899999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q 047448 240 GA 241 (249)
Q Consensus 240 ~~ 241 (249)
++
T Consensus 116 ~~ 117 (119)
T PF11698_consen 116 NN 117 (119)
T ss_dssp HS
T ss_pred hc
Confidence 85
No 5
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.86 E-value=2.6e-22 Score=183.97 Aligned_cols=58 Identities=28% Similarity=0.456 Sum_probs=56.2
Q ss_pred HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 183 LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
+.+||||||||++||.+|+|+.++.+.|||++||+||+|+|++||||||.|+|.+|..
T Consensus 372 t~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 372 TWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred ceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999999999999999999964
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.66 E-value=0.00025 Score=53.99 Aligned_cols=110 Identities=16% Similarity=0.193 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc-chhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhh
Q 047448 115 IFCYIQLLILKKPSHPSRGVPVAINCLAALLKE-PMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLS 193 (249)
Q Consensus 115 ~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig 193 (249)
.+.++ .+.+..+ +......++.+|..+... ++++..+.+.++++.|.+++..... .+...||.-++
T Consensus 8 ~i~~l-~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~----------~v~~~a~~~L~ 74 (120)
T cd00020 8 GLPAL-VSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE----------EVVKAALWALR 74 (120)
T ss_pred ChHHH-HHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCH----------HHHHHHHHHHH
Confidence 44445 4445443 344556699999999988 8999999999999999999976433 45566888899
Q ss_pred hhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 194 QFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 194 ~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
.+++..|..+..+.+.|+-..+.++|.++|.+++.+|+.++--+
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999889999999999999999999999999999999887654
No 7
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.79 E-value=0.034 Score=50.37 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=91.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCCc
Q 047448 27 VRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDPF 104 (249)
Q Consensus 27 ~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~ 104 (249)
.+-++++|+.....-+.+.++..+.- ....|..-+...+.. .-.+-..+++ +.-++.+|...|..|... .+.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n-~aaf~~nq~~Ir~~G--gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~---~en 87 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGN-SAAFPFNQDIIRDLG--GISLIGSLLNDPNPSVREKALNALNNLSVN---DEN 87 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHh-hccChhHHHHHHHcC--CHHHHHHHcCCCChHHHHHHHHHHHhcCCC---hhh
Confidence 46688999886555555555555554 456665555555421 2234444555 778999999999888665 221
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhH
Q 047448 105 AQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLA 179 (249)
Q Consensus 105 ~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qll 179 (249)
. ...+-|++-+ +....+..-|+..-..|.++|-.|-..+.|+..+-+ .++.++.+|..+....+.|.+
T Consensus 88 ~----~~Ik~~i~~V-c~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 88 Q----EQIKMYIPQV-CEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred H----HHHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHH
Confidence 2 2335566666 665443222444435689999999999999998854 699999999877666777766
No 8
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.23 E-value=0.32 Score=55.34 Aligned_cols=206 Identities=13% Similarity=0.055 Sum_probs=129.7
Q ss_pred CCCHHHHhhhhhhcchhHHHHHHHHHhhhch--------hHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC
Q 047448 9 NRSESHRAQLLDDDGPSYVRVFVSILRDIYK--------EETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS 80 (249)
Q Consensus 9 k~~~e~r~~~l~~~~~~y~~~fv~LL~~~sk--------~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~ 80 (249)
..+.+.|..+++..| +..|++++...++ .+..+...--+..+.-+-+..+.++.+.-... +
T Consensus 261 s~s~e~r~~Iv~aGg---Ip~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~--------r 329 (2102)
T PLN03200 261 SQSKEAKQAIADAGG---IPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESP--------R 329 (2102)
T ss_pred cCCHHHHHHHHHCCC---HHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhccc--------c
Confidence 345677777777655 6667777764331 11233333344444433344444444311000 1
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-H-HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-V-GIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQAD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~-~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~ 158 (249)
|.-+.--++..|+-++.-.. .++.. .+.. + ....-| .+++++++ +......++.+|.+++.++..|..+.+.+
T Consensus 330 d~~~~ada~gALayll~l~d-~~~~~--~~~i~~~~v~~~L-V~Llr~k~-p~~vqe~V~eALasl~gN~~l~~~L~~~d 404 (2102)
T PLN03200 330 SPAPIADTLGALAYALMVFD-SSAES--TRAFDPTVIEQIL-VKLLKPRD-TKLVQERIIEALASLYGNAYLSRKLNHAE 404 (2102)
T ss_pred hHHHHHHHHhhHHHHHHhcC-Cchhh--hhhccccccHHHH-HHHhCCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcc
Confidence 22333345555555543211 11110 1111 1 222345 77777643 22223558899999999999999999999
Q ss_pred cccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 159 GVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 159 gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
++++|+.+|..... .+..=+|-+|...+.+-++.+..+-+-|+=..+.++|.|+++++++.|..++.-+-
T Consensus 405 aik~LV~LL~~~~~----------evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa 474 (2102)
T PLN03200 405 AKKVLVGLITMATA----------DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILT 474 (2102)
T ss_pred chhhhhhhhccCCH----------HHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999976554 33366888888888888888999999999999999999999999999998886665
Q ss_pred ch
Q 047448 239 LG 240 (249)
Q Consensus 239 ~~ 240 (249)
..
T Consensus 475 ~~ 476 (2102)
T PLN03200 475 DE 476 (2102)
T ss_pred cC
Confidence 43
No 9
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.19 E-value=0.073 Score=60.26 Aligned_cols=192 Identities=15% Similarity=0.116 Sum_probs=123.1
Q ss_pred HHHHHHHHHhhhchhHH-HHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCC
Q 047448 26 YVRVFVSILRDIYKEET-VEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHD 102 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dt-vqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~ 102 (249)
+..++++++++-. ... .+.+.-.+..++ .+|...+.|++ .+...+.-..+. +.=++..++..|..|... +
T Consensus 363 v~~~LV~Llr~k~-p~~vqe~V~eALasl~-gN~~l~~~L~~--~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~---~ 435 (2102)
T PLN03200 363 IEQILVKLLKPRD-TKLVQERIIEALASLY-GNAYLSRKLNH--AEAKKVLVGLITMATADVQEELIRALSSLCCG---K 435 (2102)
T ss_pred cHHHHHHHhCCCC-CchhHHHHHHHHHHhc-CChHHHHHHHh--ccchhhhhhhhccCCHHHHHHHHHHHHHHhCC---C
Confidence 3456777777632 222 244554444444 56666666654 122233333344 666888888888888765 2
Q ss_pred Cchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhhccccccchhhhHH
Q 047448 103 PFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAG 180 (249)
Q Consensus 103 ~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp 180 (249)
.+.. .... ...+..| -.+|++++ .+-...|++.+..+-. .++.|..+.+.+|+++|+++|+.....+
T Consensus 436 ~e~~--~aIi~~ggIp~L-V~LL~s~s--~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~i------ 504 (2102)
T PLN03200 436 GGLW--EALGGREGVQLL-ISLLGLSS--EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKA------ 504 (2102)
T ss_pred HHHH--HHHHHcCcHHHH-HHHHcCCC--HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHH------
Confidence 2111 1111 3344444 44555532 2222347888888875 5568999999999999999997654322
Q ss_pred HHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhc
Q 047448 181 AMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 181 ~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~ 239 (249)
..=||.=||....+-++-+.++.+-|+=..+.++|.+.++++|.+|+.++-.+..
T Consensus 505 ----qeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 505 ----KEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred ----HHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 1224444566665666788999999999999999999999999999999988864
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.04 E-value=0.052 Score=55.85 Aligned_cols=127 Identities=13% Similarity=0.197 Sum_probs=96.1
Q ss_pred hhh--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHH
Q 047448 110 SLE--VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAV 187 (249)
Q Consensus 110 ~~~--~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lav 187 (249)
+.+ -+++.|| .+.+..+..+.+-+--+|..+.++...+.......+.+-++.|+.+++.....-- .|+.
T Consensus 527 ~ll~~~~llp~L-~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE-------~VlQ- 597 (708)
T PF05804_consen 527 QLLQEYNLLPWL-KDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDE-------IVLQ- 597 (708)
T ss_pred HHHHhCCHHHHH-HHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHH-------HHHH-
Confidence 444 4799999 9988654333334445889999999999999999998889999999965541110 1222
Q ss_pred HhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh-hhhh
Q 047448 188 ACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA-KYAS 245 (249)
Q Consensus 188 a~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~-~~~~ 245 (249)
.+|=..+|++|-+....++++-++-..+..||++.|++||.-|=.|.--++-.. +|..
T Consensus 598 il~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ 656 (708)
T PF05804_consen 598 ILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAE 656 (708)
T ss_pred HHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 456678999986655566688889999999999999999999988887777665 6653
No 11
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.1 Score=49.34 Aligned_cols=145 Identities=19% Similarity=0.314 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhH-HHhhcc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRS-SFVQAD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~-~fw~~~ 158 (249)
|.-++.+|+.+|+...+. +|+.+ +.+. .++++-| -..+.+. .+..-...+.-++..|+|..++=. .|-...
T Consensus 137 ~~~lR~~Aa~Vigt~~qN---NP~~Q--e~v~E~~~L~~L-l~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 137 DAELRELAARVIGTAVQN---NPKSQ--EQVIELGALSKL-LKILSSD-DPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred cHHHHHHHHHHHHHHHhc---CHHHH--HHHHHcccHHHH-HHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 899999999999999998 87654 4445 5566666 4444432 223322457889999999988766 677889
Q ss_pred cccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 159 GVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 159 gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
|...|.+++......+..| ..|.+=|+-++...+.-+.++..+|.+..++.+....|.+++..|+.++...+
T Consensus 210 G~~~L~~vl~~~~~~~~lk--------rK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 210 GYQVLRDVLQSNNTSVKLK--------RKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred CHHHHHHHHHcCCcchHHH--------HHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 9999999997754333333 56666677788888877889999999999999999999999999999998877
Q ss_pred ch
Q 047448 239 LG 240 (249)
Q Consensus 239 ~~ 240 (249)
-.
T Consensus 282 ~~ 283 (342)
T KOG2160|consen 282 SE 283 (342)
T ss_pred HH
Confidence 43
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.37 E-value=0.28 Score=50.66 Aligned_cols=169 Identities=15% Similarity=0.179 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHH
Q 047448 39 KEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIF 116 (249)
Q Consensus 39 k~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l 116 (249)
.++.++--+.++-.|-++..-.... .+ .+--.+...+|. +.-+.+.+..+|.+|....-.+..+.. .+.+
T Consensus 262 QeqLlrv~~~lLlNLAed~~ve~kM-~~--~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~-----~giV 333 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRVELKM-VN--KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE-----SGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHH-Hh--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-----cCCH
Confidence 4566666666666665444333332 22 111223333344 555777788888888776321211211 3333
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhh
Q 047448 117 CYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFI 196 (249)
Q Consensus 117 ~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v 196 (249)
.-| ...+.++ +..-++.++++|--|--.++.|..+.+.+.+|.|+.+|.....+. .++++.-| +
T Consensus 334 ~kL-~kLl~s~--~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~~~~--------val~iLy~-----L 397 (708)
T PF05804_consen 334 EKL-LKLLPSE--NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPNFRE--------VALKILYN-----L 397 (708)
T ss_pred HHH-HHHhcCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCchHH--------HHHHHHHH-----h
Confidence 334 4444443 445677799999999999999999999999999999997543320 23333222 2
Q ss_pred HhccchhHHHhhhchHHHHHhh-ccCCChhhhHHHH
Q 047448 197 QYHPAGRVIVTDLKAKERVMKL-MNHENTEVTKSAL 231 (249)
Q Consensus 197 ~~~p~g~~~~~~l~~k~~vm~l-~~~~d~~v~~~al 231 (249)
-..+++|..+..-+|=..+|++ +++++++|..+++
T Consensus 398 S~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eli 433 (708)
T PF05804_consen 398 SMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELI 433 (708)
T ss_pred ccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHH
Confidence 2356789999988988888885 6668888987653
No 13
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.35 E-value=0.031 Score=35.96 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=34.6
Q ss_pred cchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 200 PAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 200 p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
|+.+..+-+.|+=..+.+||.|+|++|+.+|.-|+.-+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56788888999999999999999999999999998765
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.29 E-value=0.053 Score=40.94 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=62.3
Q ss_pred HhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHH
Q 047448 154 FVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 233 (249)
Q Consensus 154 fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~ 233 (249)
|.+.++++.|.+.+..... .+...|+.=|+.+....|.++..+-+.|+-..+.++|+++|++|+..|+.|
T Consensus 3 ~~~~~~i~~l~~~l~~~~~----------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~ 72 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDE----------NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWA 72 (120)
T ss_pred HHHcCChHHHHHHHHcCCH----------HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHH
Confidence 4566789999999865543 222334444888888888888888888999999999999999999999999
Q ss_pred HHHHhchh
Q 047448 234 IQRLFLGA 241 (249)
Q Consensus 234 ~q~~~~~~ 241 (249)
+..+..+.
T Consensus 73 L~~l~~~~ 80 (120)
T cd00020 73 LRNLAAGP 80 (120)
T ss_pred HHHHccCc
Confidence 99887655
No 15
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.12 E-value=0.031 Score=34.08 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=23.0
Q ss_pred HHHHhhccCCChhhhHHHHHHHHHHhc
Q 047448 213 ERVMKLMNHENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 213 ~~vm~l~~~~d~~v~~~al~~~q~~~~ 239 (249)
..+++++++++++||+.|..|.+++.-
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999873
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.60 E-value=0.1 Score=47.35 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=61.8
Q ss_pred HHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHH
Q 047448 152 SSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSAL 231 (249)
Q Consensus 152 ~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al 231 (249)
..+|+.+.++.|+.+|+..... .+...|++=+|.. ..||..+.++.++||-..|-.++..+++.||..||
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp---------~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL 75 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDP---------FIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKAL 75 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCCh---------HHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHH
Confidence 3469999999999999765432 2335566656663 67999999999999999999999999999999999
Q ss_pred HHHHHH
Q 047448 232 LCIQRL 237 (249)
Q Consensus 232 ~~~q~~ 237 (249)
.|+--+
T Consensus 76 ~aL~Nl 81 (254)
T PF04826_consen 76 NALNNL 81 (254)
T ss_pred HHHHhc
Confidence 988644
No 17
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=0.21 Score=48.02 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhh
Q 047448 88 SCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLI 167 (249)
Q Consensus 88 a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL 167 (249)
+-.+++.|+.....+.+... .+-+.-+ ..+-++-+...| |-+...|..|-...+.|+..+.++|+|.|+.++
T Consensus 146 aVgCitnLaT~d~nk~kiA~-----sGaL~pl-trLakskdirvq--rnatgaLlnmThs~EnRr~LV~aG~lpvLVsll 217 (550)
T KOG4224|consen 146 AVGCITNLATFDSNKVKIAR-----SGALEPL-TRLAKSKDIRVQ--RNATGALLNMTHSRENRRVLVHAGGLPVLVSLL 217 (550)
T ss_pred ehhhhhhhhccccchhhhhh-----ccchhhh-HhhcccchhhHH--HHHHHHHHHhhhhhhhhhhhhccCCchhhhhhh
Confidence 45677888877433322211 2223333 333333322223 347788999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhc--hHHHHHhhccCCChhhhHHHHHHHHHHhchhhhh
Q 047448 168 SPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLK--AKERVMKLMNHENTEVTKSALLCIQRLFLGAKYA 244 (249)
Q Consensus 168 ~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~--~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~~~~ 244 (249)
+..-..++|- +||-||-.. -.-+.|+++-+-+ .-.....||.++++.||-+|=+|+.-+-.+-+|-
T Consensus 218 ~s~d~dvqyy----------cttaisnIa-Vd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq 285 (550)
T KOG4224|consen 218 KSGDLDVQYY----------CTTAISNIA-VDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ 285 (550)
T ss_pred ccCChhHHHH----------HHHHhhhhh-hhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh
Confidence 7554334443 677776553 2335677777777 5567889999999999999999987766555664
No 18
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.23 E-value=0.93 Score=44.73 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc-chhhHHHhhcc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKE-PMVRSSFVQAD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~~ 158 (249)
|.-+...|+++|+.|... .+.. +... +....-| .+....++.-.+. .+..++..+.+. ++.....++.+
T Consensus 132 d~~Va~~A~~~L~~l~~~---~~~~---~~l~~~~~~~~L-~~l~~~~~~~vR~--Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASH---PEGL---EQLFDSNLLSKL-KSLMSQSSDIVRC--RVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred cHHHHHHHHHHHHHHhCC---chhH---HHHhCcchHHHH-HHHHhccCHHHHH--HHHHHHHHHHhcCHHHHHHHHhcc
Confidence 889999999999999876 4333 2232 4456777 6666552211121 144555566544 66666777766
Q ss_pred cccchHhhhccccccchhhhHHHHHHHHHHhch-hhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHH
Q 047448 159 GVKLLTPLISPASTQQSIQLAGAMLALAVACFD-LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 235 (249)
Q Consensus 159 gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~d-ig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q 235 (249)
-++.++.-|++ .+ + -+...|=+ +++.+. .|.|...+.+-|+=.++..++.+.+.+-+..++.-..
T Consensus 203 ll~~ll~eL~~-dD-i---------Lvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g 268 (503)
T PF10508_consen 203 LLDLLLKELDS-DD-I---------LVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPG 268 (503)
T ss_pred HHHHHHHHhcC-cc-H---------HHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhh
Confidence 68888888866 22 1 11222222 667777 9999999999999999999998886665555554433
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=92.71 E-value=3.3 Score=40.85 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=123.3
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC------hHHHHHHHHHHHHHHHhhhcCCC
Q 047448 30 FVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS------NWFIQEKSCKILASIVRYLKHDP 103 (249)
Q Consensus 30 fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~------D~fi~~~a~~iLt~Li~~~~~~~ 103 (249)
+++.|++. +.|.+.++...++-++...+- .....+ |.+||. +..|+..+++.|..++.. ..
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~-~~l~~~--------~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~---~~ 109 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSALSP-DSLLPQ--------YQPFLQRGLTHPSPKVRRLALKQLGRIARH---SE 109 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhccCH-HHHHHH--------HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CH
Confidence 44555544 334455555666666654421 111111 333443 779999999999888865 21
Q ss_pred chhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHH
Q 047448 104 FAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAM 182 (249)
Q Consensus 104 ~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M 182 (249)
... +-.. +.++..+ ...++.+ +.+.-..|+.+|..+.+.+..-..+...+++..|.+++.....-+.+
T Consensus 110 ~~~--~~~~~~~l~~~i-~~~L~~~--d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~------ 178 (503)
T PF10508_consen 110 GAA--QLLVDNELLPLI-IQCLRDP--DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRC------ 178 (503)
T ss_pred HHH--HHhcCccHHHHH-HHHHcCC--cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHH------
Confidence 111 1111 5556666 6666665 44555669999999999999888888888888888888652221111
Q ss_pred HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 183 LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.++.+ +.+..++-|+.-..+..-|.-..+.+.+..+|.-||-.|+..+..+-..+
T Consensus 179 Rv~el----~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 179 RVYEL----LVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHHHH----HHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 33333 44566788999999999899999999999999999999999999987755
No 20
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=92.19 E-value=0.32 Score=30.23 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=32.8
Q ss_pred cchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 200 PAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 200 p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
|..+..+-+.|+=+.+++||.++|++++++|+.|+.-+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44677787889999999999999999999999987654
No 21
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=0.52 Score=46.85 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADG 159 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~g 159 (249)
+.-++.-|+-.||.+++..+..+..+...+..+-|+. ++.+|+.+-+.. |+-+|.-... .+.||...-+.+.
T Consensus 123 ~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~-----Ll~s~~~~v~eQ--avWALgNIagds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 123 NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ-----LLSSPSADVREQ--AVWALGNIAGDSPDCRDYVLSCGA 195 (514)
T ss_pred ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH-----HhcCCcHHHHHH--HHHHHhccccCChHHHHHHHhhcc
Confidence 4677888999999999975444322110133344332 345543333322 5555555543 4789999999999
Q ss_pred ccchHhhhccccc-cchhhhH-----------------------HHH---------HHHHHHhchhhhhhHhccchhHHH
Q 047448 160 VKLLTPLISPAST-QQSIQLA-----------------------GAM---------LALAVACFDLSQFIQYHPAGRVIV 206 (249)
Q Consensus 160 v~~L~~iL~~~~~-~~~~Qll-----------------------p~M---------~~lava~~dig~~v~~~p~g~~~~ 206 (249)
+++|..++..... .+--++. |++ .+++=||-=|+....+-|+.-+.+
T Consensus 196 l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~v 275 (514)
T KOG0166|consen 196 LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMV 275 (514)
T ss_pred hHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999864421 0000111 221 777778888888888999999999
Q ss_pred hhhchHHHHHhhccCCChhhhHHHHHHHHHHhchhhh
Q 047448 207 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKY 243 (249)
Q Consensus 207 ~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~~~ 243 (249)
-+.|.=.++-+|+.|+.+.|+-.||+|+.-+...+++
T Consensus 276 i~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 276 IDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred HHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence 9999999999999999999999999998876655543
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.95 E-value=3.9 Score=39.36 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=100.5
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHhcChHH-----H----HHHHhccCCCCcc-cccccC------hHHHHHHHHHHH
Q 047448 29 VFVSILRDIYKEETVEYVLALIDEMLTANPKR-----A----RLFHDKSLASEDT-YEPFLS------NWFIQEKSCKIL 92 (249)
Q Consensus 29 ~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~r-----v----~~F~~~~~~~~~p-y~pfL~------D~fi~~~a~~iL 92 (249)
.=++.|.++...+.++.+...|..++.+.... + ++|...++. -.+ |.+-+. |..+...|...+
T Consensus 98 lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-~~~~~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 98 LALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-VEDELIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-HHGGHHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred HHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhhccCCcchhHHHHHHHH
Confidence 34688888888999999999999998766411 2 222222221 011 333333 778888888888
Q ss_pred HHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHhccchhhHHHhhcccccchHhhhcccc
Q 047448 93 ASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVP-VAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAS 171 (249)
Q Consensus 93 t~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~-~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~ 171 (249)
..+ .. .++.. ....+.+++.| ++.+.. .+++.+ ..+++|..+.+....-. .+...++.+...++.+.
T Consensus 177 ~~i-~~---~~~~~--~~~~~~~~~~L-~~~l~~---~~~~~q~~il~~l~~~~~~~~~~~--~~~~~i~~l~~~l~s~~ 244 (526)
T PF01602_consen 177 SEI-KC---NDDSY--KSLIPKLIRIL-CQLLSD---PDPWLQIKILRLLRRYAPMEPEDA--DKNRIIEPLLNLLQSSS 244 (526)
T ss_dssp HHH-HC---THHHH--TTHHHHHHHHH-HHHHTC---CSHHHHHHHHHHHTTSTSSSHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHH-cc---Ccchh--hhhHHHHHHHh-hhcccc---cchHHHHHHHHHHHhcccCChhhh--hHHHHHHHHHHHhhccc
Confidence 777 11 22110 13447788888 776654 233332 13333333333222111 11234777777776433
Q ss_pred ccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 172 TQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 172 ~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
..+.|. | +.-+....|.-. .+.. +-..+..+++++|++|||-||.+.-.+..++
T Consensus 245 ~~V~~e-----------~--~~~i~~l~~~~~-~~~~--~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 245 PSVVYE-----------A--IRLIIKLSPSPE-LLQK--AINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHH-----------H--HHHHHHHSSSHH-HHHH--HHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred cHHHHH-----------H--HHHHHHhhcchH-HHHh--hHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 221111 1 111222223222 3333 5677888888999999999999888887665
No 23
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=0.88 Score=43.11 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=79.0
Q ss_pred CChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhch
Q 047448 132 RGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKA 211 (249)
Q Consensus 132 ~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~ 211 (249)
+....|..-|+++.-.=..-.-|.+.+|..++...++.... .+=+-|+.-||..++--|..-.-+-+.||
T Consensus 98 e~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~----------~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 98 EDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA----------ELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH----------HHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 33334445555554444444455678998888888865543 44477889999999999999999999999
Q ss_pred HHHHHhhccCCCh-hhhHHHHHHHHHHhchhhhh
Q 047448 212 KERVMKLMNHENT-EVTKSALLCIQRLFLGAKYA 244 (249)
Q Consensus 212 k~~vm~l~~~~d~-~v~~~al~~~q~~~~~~~~~ 244 (249)
...+|..++++++ .||..||.|+.-++-|+++.
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g 201 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG 201 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH
Confidence 9999999998876 47799999999999998654
No 24
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=89.07 E-value=0.72 Score=38.24 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=38.4
Q ss_pred hccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh--hhhhhh
Q 047448 198 YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA--KYASFL 247 (249)
Q Consensus 198 ~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~--~~~~~~ 247 (249)
-.++.|.+-..=..++..+.|+.|+|++|+..||.|+-.|=... +|-+-+
T Consensus 5 kf~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L 56 (141)
T PF07539_consen 5 KFKNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNL 56 (141)
T ss_pred hcCCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHH
Confidence 34666777777678899999999999999999999998874322 554433
No 25
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=89.00 E-value=2.8 Score=40.29 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhc-cchhhHHHhhcccc
Q 047448 83 FIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGV-PVAINCLAALLK-EPMVRSSFVQADGV 160 (249)
Q Consensus 83 fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i-~~~v~~Lq~LLr-~~~yR~~fw~~~gv 160 (249)
..+..|+-.||.+++.....++.+...++.+-|++.| + + .+..| +-+|=+|.-... .+.||..+...+.+
T Consensus 130 mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL-~----s---~~~~V~eQavWALGNiAGDS~~~RD~vL~~gal 201 (526)
T COG5064 130 MLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLL-S----S---TEDDVREQAVWALGNIAGDSEGCRDYVLQCGAL 201 (526)
T ss_pred HHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHH-c----C---chHHHHHHHHHHhccccCCchhHHHHHHhcCch
Confidence 3344588899998886433322211024557777777 2 2 12222 113334444433 34577777777778
Q ss_pred cchHhhhccccc---------------------cchhhhH----HHH---------HHHHHHhchhhhhhHhccchhHHH
Q 047448 161 KLLTPLISPAST---------------------QQSIQLA----GAM---------LALAVACFDLSQFIQYHPAGRVIV 206 (249)
Q Consensus 161 ~~L~~iL~~~~~---------------------~~~~Qll----p~M---------~~lava~~dig~~v~~~p~g~~~~ 206 (249)
.++..+|..... +...+-+ |.+ .++.=||--|+-.+.---+....+
T Consensus 202 eplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 202 EPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred HHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 888888854321 1111111 221 777778887776555444777788
Q ss_pred hhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 207 TDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 207 ~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
-+-|+-.|..+|++|++..|.-.||.+|.-++..+
T Consensus 282 ld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 282 LDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 88899999999999999999999999998776544
No 26
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=4.9 Score=42.05 Aligned_cols=170 Identities=16% Similarity=0.187 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHhccC--------CCCcccccccC-----hHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 047448 42 TVEYVLALIDEMLTANPKRARLFHDKSL--------ASEDTYEPFLS-----NWFIQEKSCKILASIVRYLKHDPFAQRC 108 (249)
Q Consensus 42 tvqyvL~LidDlL~e~p~rv~~F~~~~~--------~~~~py~pfL~-----D~fi~~~a~~iLt~Li~~~~~~~~~~~~ 108 (249)
++-..+.++-+|+.+.|+.++.|.+... -....|.|=.. |.|++.+..++|..|=+. +++-
T Consensus 195 VL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~---d~da--- 268 (866)
T KOG1062|consen 195 VLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN---DADA--- 268 (866)
T ss_pred eeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC---CccH---
Confidence 5566788999999999988888876322 13456776666 999999999999999655 4332
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHH
Q 047448 109 NSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVA 188 (249)
Q Consensus 109 ~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava 188 (249)
.+...-.+.=++++-.++...++--.--||++...+.....-|..- ++.|-+-|.+..+++.| ||
T Consensus 269 Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvla-----iniLgkFL~n~d~NirY----------va 333 (866)
T KOG1062|consen 269 SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLA-----INILGKFLLNRDNNIRY----------VA 333 (866)
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHH-----HHHHHHHhcCCccceee----------ee
Confidence 1222333333312222222222222222777777777777766653 44455555555454443 45
Q ss_pred hchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
.+=++..|..-|. .+++ =..-|.+-+.|+|+.+|++||.=.=++
T Consensus 334 Ln~L~r~V~~d~~---avqr--Hr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 334 LNMLLRVVQQDPT---AVQR--HRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred hhhHHhhhcCCcH---HHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 5666666665553 3333 245678889999999999998754443
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=85.95 E-value=34 Score=32.90 Aligned_cols=131 Identities=18% Similarity=0.157 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGV 160 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv 160 (249)
|.-++..+..-++.++... + +....+++++ -+.+..+ +......++..+..++....-. ....+
T Consensus 353 d~~~~~~~i~~I~~la~~~---~------~~~~~~v~~l-~~ll~~~--~~~~~~~~~~~i~~ll~~~~~~----~~~~l 416 (526)
T PF01602_consen 353 DPDFRRELIKAIGDLAEKF---P------PDAEWYVDTL-LKLLEIS--GDYVSNEIINVIRDLLSNNPEL----REKIL 416 (526)
T ss_dssp -HHHHHHHHHHHHHHHHHH---G------SSHHHHHHHH-HHHHHCT--GGGCHCHHHHHHHHHHHHSTTT----HHHHH
T ss_pred chhhhhhHHHHHHHHHhcc---C------chHHHHHHHH-HHhhhhc--cccccchHHHHHHHHhhcChhh----hHHHH
Confidence 4457777777777777762 1 1224456666 6666542 2233444667777776543221 11237
Q ss_pred cchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccc---hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPA---GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 161 ~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~---g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+.|++.+...... .+++++++=||||..+.++ ...+++. +.+....++++||..+|.|.-|+
T Consensus 417 ~~L~~~l~~~~~~---------~~~~~~~wilGEy~~~~~~~~~~~~~~~~------l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 417 KKLIELLEDISSP---------EALAAAIWILGEYGELIENTESAPDILRS------LIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp HHHHHHHTSSSSH---------HHHHHHHHHHHHHCHHHTTTTHHHHHHHH------HHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH---------HHHHHHHhhhcccCCcccccccHHHHHHH------HHHhhccccHHHHHHHHHHHHHH
Confidence 7777777654333 6779999999999999998 3333333 34445667899999999999999
Q ss_pred hchhh
Q 047448 238 FLGAK 242 (249)
Q Consensus 238 ~~~~~ 242 (249)
....+
T Consensus 482 ~~~~~ 486 (526)
T PF01602_consen 482 FKRNP 486 (526)
T ss_dssp HHHSC
T ss_pred HhhCC
Confidence 87653
No 28
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=85.61 E-value=6.9 Score=32.83 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=87.7
Q ss_pred HHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhccc--ccchHhhh
Q 047448 90 KILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADG--VKLLTPLI 167 (249)
Q Consensus 90 ~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~g--v~~L~~iL 167 (249)
.+++.|...+.-..... ......+.+=+ .+++++++ ...-|+|+.++........+ ..|-++.+ +..|..+|
T Consensus 3 ~ll~~l~~~~~~~~~~~--~~~l~~l~~ri-~~LL~s~~--~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L 76 (165)
T PF08167_consen 3 SLLSTLRSCGLLLSAPS--KSALHKLVTRI-NSLLQSKS--AYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSIL 76 (165)
T ss_pred HHHHHHHccchhhcccC--HHHHHHHHHHH-HHHhCCCC--hhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 45556655543221111 12346777777 77887753 34457799999999988765 66656555 89999999
Q ss_pred ccccccchhhhHHHHHHHHHHhchhhhhhHhccc-hhHHHhh-hc-hHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 168 SPASTQQSIQLAGAMLALAVACFDLSQFIQYHPA-GRVIVTD-LK-AKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 168 ~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~-g~~~~~~-l~-~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+...+.. . .....++..+|-++++.+|+ -|.+..- ++ .=+-.+++++. +.+.-.||.+++.+|.++
T Consensus 77 ~~~~~~~-~-----~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 77 EKPDPPS-V-----LEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred cCCCCHH-H-----HHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 7643320 0 02333445889999999998 5665433 22 22334444444 788889999999999765
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=85.51 E-value=0.97 Score=32.67 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.6
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+-..+.+++.|+|+.||.+|..++.++
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 466788888999999999999988764
No 30
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=84.52 E-value=1.2 Score=30.02 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=32.2
Q ss_pred HhchhhhhhHhccch-hHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 188 ACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 188 a~~dig~~v~~~p~g-~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
||.=||+++...|+- +..+.+ +-..++.+|.+++++||..|..|+..|
T Consensus 7 A~~aLg~l~~~~~~~~~~~~~~--~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 7 AAWALGRLAEGCPELLQPYLPE--LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHCTTTTTHHHHHHHHHH--HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHhhHhcccHHHHHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 444466665555432 222222 566778999999999999999998654
No 31
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.38 E-value=26 Score=38.07 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=44.2
Q ss_pred HHHHhhhc---hhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC-------hHHHHHHHHHHHHHHHhh
Q 047448 31 VSILRDIY---KEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS-------NWFIQEKSCKILASIVRY 98 (249)
Q Consensus 31 v~LL~~~s---k~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~-------D~fi~~~a~~iLt~Li~~ 98 (249)
++.|.... ++|+.+-+|..++|++...|....-+.+ +..+..+. |.-+++.|.-+|+.++..
T Consensus 208 l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~------~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 208 LNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS------QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH------HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 35555543 4567899999999999999876665554 22222222 778999999999999887
No 32
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=83.94 E-value=0.74 Score=36.59 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=39.1
Q ss_pred HHHHHHhchhhhhhHhccchhHHHhhhc-----hHHHHHhhccCCChhhhHHHH
Q 047448 183 LALAVACFDLSQFIQYHPAGRVIVTDLK-----AKERVMKLMNHENTEVTKSAL 231 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~~~~l~-----~k~~vm~l~~~~d~~v~~~al 231 (249)
+--|+.-+|.+.|=|+|-.=..+.++|. +....+.|+.|||+.||..|=
T Consensus 15 q~~A~~~~d~~~~Nr~~~k~~~~~~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA 68 (106)
T PF09450_consen 15 QGEAIDRGDARTANRLYDKMIRIYDELKSRGGDQRDALLPLLKHPNMQVRLWAA 68 (106)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHHHHSTT-GGGGGGGGGGSS-HHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCChhHHHHHH
Confidence 3448889999999999998888888872 347899999999999998874
No 33
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.05 E-value=2.7 Score=35.45 Aligned_cols=47 Identities=30% Similarity=0.343 Sum_probs=36.3
Q ss_pred HHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 186 AVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 186 ava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
.|+..|+ +..|| .++|.. -..+...|.++||.||+.|+.++-+++.+
T Consensus 9 i~~l~DL---~~r~~---~~ve~~--~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 9 IIALGDL---CIRYP---NLVEPY--LPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred HHHHHHH---HHhCc---HHHHhH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 4444554 45677 566653 56788999999999999999999999866
No 34
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.55 E-value=16 Score=36.20 Aligned_cols=212 Identities=18% Similarity=0.210 Sum_probs=121.0
Q ss_pred HHhhhhhhcchhH--------HHHHHHHHhhhchhHHHHHHHHHHHHHHhcC-----h----HHHHHHHhccC-----CC
Q 047448 14 HRAQLLDDDGPSY--------VRVFVSILRDIYKEETVEYVLALIDEMLTAN-----P----KRARLFHDKSL-----AS 71 (249)
Q Consensus 14 ~r~~~l~~~~~~y--------~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~-----p----~rv~~F~~~~~-----~~ 71 (249)
+.-.++.+-++.| +..|+.||++ .+.|+.-.++-|+-|+=.+| . +.++.+.+..- +.
T Consensus 106 Q~mhvlAt~PdLYp~lveln~V~slL~LLgH-eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqn 184 (536)
T KOG2734|consen 106 QEMHVLATMPDLYPILVELNAVQSLLELLGH-ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQN 184 (536)
T ss_pred HHHHhhhcChHHHHHHHHhccHHHHHHHhcC-CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHH
Confidence 4456777777777 6678888888 57788888888777664433 1 44444444210 00
Q ss_pred CcccccccC-hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHh--cC-CCCCCCChHHHHHHHHHHhcc
Q 047448 72 EDTYEPFLS-NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLIL--KK-PSHPSRGVPVAINCLAALLKE 147 (249)
Q Consensus 72 ~~py~pfL~-D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l--~~-~~~~~~~i~~~v~~Lq~LLr~ 147 (249)
-.-+.-..+ +..=.+-+..++-.++.. +|.... +-+..+++.|| -..+ ++ -+.|.+| |...|.-+|..
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~---r~~~~~-~~~e~~ll~WL-L~rl~~k~~f~aNk~Y---asEiLaillq~ 256 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEV---RPAICT-EIVEQGLLSWL-LKRLKGKAAFDANKQY---ASEILAILLQN 256 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhc---cHHHHH-HHHHhhHHHHH-HHHHhcccCcchhHHH---HHHHHHHHhcc
Confidence 001111112 334455567777778777 655532 22338899998 5534 22 2344454 77888888877
Q ss_pred ch-hhHHHhhcccccchHhhhccc-c-c--cchh-hhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccC
Q 047448 148 PM-VRSSFVQADGVKLLTPLISPA-S-T--QQSI-QLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH 221 (249)
Q Consensus 148 ~~-yR~~fw~~~gv~~L~~iL~~~-~-~--~~~~-Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~ 221 (249)
.. .|...-+.+|+..+..=|..= . + +..= ++ |. -.+|.=+-.=-.|.+|.-.-+ |--...|.||-.
T Consensus 257 s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~Em---me----NLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr 328 (536)
T KOG2734|consen 257 SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEM---ME----NLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLR 328 (536)
T ss_pred CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHH---HH----HHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHH
Confidence 66 666666678888877655211 0 0 0000 00 10 011111112245665554333 223567888887
Q ss_pred CChhhhHHHHHHHHHHhchhh
Q 047448 222 ENTEVTKSALLCIQRLFLGAK 242 (249)
Q Consensus 222 ~d~~v~~~al~~~q~~~~~~~ 242 (249)
+..--|+-|++.++-.|.+.+
T Consensus 329 ~Kk~sr~SalkvLd~am~g~~ 349 (536)
T KOG2734|consen 329 EKKVSRGSALKVLDHAMFGPE 349 (536)
T ss_pred HHHHhhhhHHHHHHHHHhCCC
Confidence 788889999999999998753
No 35
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.33 E-value=39 Score=28.86 Aligned_cols=138 Identities=15% Similarity=0.199 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhccchhhHHHhhccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGV-PVAINCLAALLKEPMVRSSFVQADG 159 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i-~~~v~~Lq~LLr~~~yR~~fw~~~g 159 (249)
.--+.-.|+.+++.|+...... . +...+.++.-| -..+.. .+..| ..|..||..+...-.+ +
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~--~---~~~~~~~l~~L-l~~~~~---~~~~i~~~a~~~L~~i~~~~~~--------~ 128 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSH--F---EPYADILLPPL-LKKLGD---SKKFIREAANNALDAIIESCSY--------S 128 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGG--G---HHHHHHHHHHH-HHGGG------HHHHHHHHHHHHHHHTTS-H---------
T ss_pred HHHHHHHHHHHHHHHHHHHhHh--H---HHHHHHHHHHH-HHHHcc---ccHHHHHHHHHHHHHHHHHCCc--------H
Confidence 3467778999999998873222 2 12234444444 333322 23333 4466677776665431 1
Q ss_pred ccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhh----chHHHHHhhccCCChhhhHHHHHHHH
Q 047448 160 VKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDL----KAKERVMKLMNHENTEVTKSALLCIQ 235 (249)
Q Consensus 160 v~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l----~~k~~vm~l~~~~d~~v~~~al~~~q 235 (249)
-+.++.++..+...-+- .+-..++.=+..++..+|.....++.- ..-..+...++++|++||..|-.|+.
T Consensus 129 ~~~~~~~l~~~~~~Kn~------~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~ 202 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNP------QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLW 202 (228)
T ss_dssp -HHHHHHHHHHTT-S-H------HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCH------HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 11113333222211110 122223333666666777222222221 15567899999999999999999998
Q ss_pred HHhchh
Q 047448 236 RLFLGA 241 (249)
Q Consensus 236 ~~~~~~ 241 (249)
.++.+-
T Consensus 203 ~l~~~~ 208 (228)
T PF12348_consen 203 ALYSHF 208 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 887553
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=79.04 E-value=16 Score=31.29 Aligned_cols=141 Identities=12% Similarity=0.015 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhh-hhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQR-CNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADG 159 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~-~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~g 159 (249)
||-.+..+..-|..++..+ ...+... .-+.+..++..+ ...+.+ .++.-...|..+++.+...-..+..-+-..-
T Consensus 20 ~W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~~~~~~i-~~~l~d--~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGN-APEDFPPDFVECLRQLLDAI-IKQLSD--LRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH--B-----HHHHHHHH---HHH-HH-S-H--H---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC-CccccHHHHHHHHHHhHHHH-HHHHhh--hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 8999999999999999985 1111110 001123333455 444443 2445556688888888876555422121222
Q ss_pred ccchHhhhccccccchhhhHHHHHHHHHHhch-hhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 160 VKLLTPLISPASTQQSIQLAGAMLALAVACFD-LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 160 v~~L~~iL~~~~~~~~~Qllp~M~~lava~~d-ig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
+++|+..+.... .++.-+++. |..++++.|-+.+++ ...+...++|.+|.||.+++.++-.++
T Consensus 96 l~~Ll~~~~~~~-----------~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 96 LPPLLKKLGDSK-----------KFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHHGGG--------------HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccc-----------HHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 666666664332 222333322 666777777333332 445677899999999999999988887
Q ss_pred chh
Q 047448 239 LGA 241 (249)
Q Consensus 239 ~~~ 241 (249)
...
T Consensus 160 ~~~ 162 (228)
T PF12348_consen 160 EKW 162 (228)
T ss_dssp TT-
T ss_pred HHc
Confidence 543
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=77.20 E-value=77 Score=33.28 Aligned_cols=46 Identities=15% Similarity=0.363 Sum_probs=35.1
Q ss_pred chhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 190 FDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 190 ~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
-=||||..+.|++-.+++++ ..-...++++||.+.|.|+=|+....
T Consensus 464 WILGEy~~~I~~a~~~L~~~------i~~f~~E~~~VqlqlLta~vKlfl~~ 509 (746)
T PTZ00429 464 WMLGEYCDFIENGKDIIQRF------IDTIMEHEQRVQLAILSAAVKMFLRD 509 (746)
T ss_pred HHHHhhHhhHhhHHHHHHHH------HhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 44899988888777666654 23334578999999999999998776
No 38
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=74.16 E-value=12 Score=31.41 Aligned_cols=85 Identities=12% Similarity=0.130 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC------hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHH
Q 047448 41 ETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS------NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVG 114 (249)
Q Consensus 41 dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~------D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~ 114 (249)
.+--.+++.++||..-.|..++- |.|++- |..|+..|..+|+.|+..+-.+. -..
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~-----------~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~--------k~~ 63 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEP-----------YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV--------KGQ 63 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHh-----------HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee--------hhh
Confidence 34556777899999888887764 444443 78999999999999999843332 122
Q ss_pred H-HHHHHHHHhcCCCCCCCChHHHHHHHHHHhccc
Q 047448 115 I-FCYIQLLILKKPSHPSRGVPVAINCLAALLKEP 148 (249)
Q Consensus 115 ~-l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~ 148 (249)
+ ...+ . .+ .|.+..--..|..++.+++...
T Consensus 64 l~~~~l-~-~l--~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 64 LFSRIL-K-LL--VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred hhHHHH-H-HH--cCCCHHHHHHHHHHHHHHHHhc
Confidence 2 3333 2 22 2223322233667777777763
No 39
>PRK09687 putative lyase; Provisional
Probab=71.75 E-value=39 Score=30.78 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=40.6
Q ss_pred ccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 158 DGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 158 ~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+.++.|+..++..... +-.-|+.=||+.--..| .+-..++.++.++|++||.+|..++.++
T Consensus 159 ~ai~~L~~~L~d~~~~----------VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 159 AAIPLLINLLKDPNGD----------VRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHhcCCCHH----------HHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3488888888655432 22334444665511122 2344578888999999999999999886
Q ss_pred h
Q 047448 238 F 238 (249)
Q Consensus 238 ~ 238 (249)
-
T Consensus 220 ~ 220 (280)
T PRK09687 220 K 220 (280)
T ss_pred C
Confidence 4
No 40
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=71.75 E-value=16 Score=33.36 Aligned_cols=84 Identities=24% Similarity=0.359 Sum_probs=62.5
Q ss_pred HHHHHHH-HhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHh-chhhhhhHhccchhHHHhhhchHHH
Q 047448 137 AINCLAA-LLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVAC-FDLSQFIQYHPAGRVIVTDLKAKER 214 (249)
Q Consensus 137 ~v~~Lq~-LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~-~dig~~v~~~p~g~~~~~~l~~k~~ 214 (249)
|.+.||- +|-.|..|..|-+..+++.|+++|+.... ..+.+|| .=+-....-+|.--+.-|++||=..
T Consensus 111 aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~----------~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~ 180 (257)
T PF08045_consen 111 ALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNP----------PAIQSACLDTLVCILLDSPENQRDFEELNGLST 180 (257)
T ss_pred HHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCC----------chHHHHHHHHHHHHHHcChHHHHHHHHhCCHHH
Confidence 5577774 57889999999999999999999954322 2234444 3345556677877889999999999
Q ss_pred HHhhccCC--ChhhhHHH
Q 047448 215 VMKLMNHE--NTEVTKSA 230 (249)
Q Consensus 215 vm~l~~~~--d~~v~~~a 230 (249)
|-.++.+. +.+||..-
T Consensus 181 v~~llk~~~~~~~~r~K~ 198 (257)
T PF08045_consen 181 VCSLLKSKSTDRELRLKC 198 (257)
T ss_pred HHHHHccccccHHHhHHH
Confidence 99999887 56666543
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=70.77 E-value=74 Score=33.40 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHh--hcc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFV--QAD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw--~~~ 158 (249)
+.||+-.|+..+.++... .|+.. ....|++.| ..++.- .+..- ...++..|..+.+....-| .++
T Consensus 153 ~pYVRKtAalai~Kly~~---~pelv----~~~~~~~~L-~~LL~D--~dp~V---v~nAl~aL~eI~~~~~~~l~l~~~ 219 (746)
T PTZ00429 153 DPYVRKTAAMGLGKLFHD---DMQLF----YQQDFKKDL-VELLND--NNPVV---ASNAAAIVCEVNDYGSEKIESSNE 219 (746)
T ss_pred CHHHHHHHHHHHHHHHhh---Ccccc----cccchHHHH-HHHhcC--CCccH---HHHHHHHHHHHHHhCchhhHHHHH
Confidence 678888888888888665 43321 114566667 666543 23333 4444444444433221111 123
Q ss_pred cccchHhhhcccc--ccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHH
Q 047448 159 GVKLLTPLISPAS--TQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQR 236 (249)
Q Consensus 159 gv~~L~~iL~~~~--~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~ 236 (249)
.+.-|...|.... +|+ .++-+ +.++-|....-. ...-.++...+.|.|+-|-++|.+++=.
T Consensus 220 ~~~~Ll~~L~e~~EW~Qi--------~IL~l-------L~~y~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~ 282 (746)
T PTZ00429 220 WVNRLVYHLPECNEWGQL--------YILEL-------LAAQRPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVAN 282 (746)
T ss_pred HHHHHHHHhhcCChHHHH--------HHHHH-------HHhcCCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3444444442211 111 11111 233446544333 2356778888999999999999998665
Q ss_pred Hh
Q 047448 237 LF 238 (249)
Q Consensus 237 ~~ 238 (249)
+.
T Consensus 283 l~ 284 (746)
T PTZ00429 283 LA 284 (746)
T ss_pred hc
Confidence 54
No 42
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=69.00 E-value=1.7 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=24.0
Q ss_pred hchhhhhhHhccchhHHHhhhchHHHHHh
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKERVMK 217 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~~vm~ 217 (249)
.+|++.|+..||.|+.++....|+..--.
T Consensus 24 VYDvt~~~~~hpgg~~~~~~~aG~D~T~~ 52 (76)
T PF00173_consen 24 VYDVTDFLDRHPGGADILKKYAGRDATDA 52 (76)
T ss_dssp EEECTTTTTTSTTTSHHHHTTTTSBTHHH
T ss_pred EcccccccccccchhHHHHHhccccccHH
Confidence 48999999999999999998887754333
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.93 E-value=1.2e+02 Score=30.65 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=115.5
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC-----hH-HHHHHHHHHHHHHHhhh
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS-----NW-FIQEKSCKILASIVRYL 99 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~-----D~-fi~~~a~~iLt~Li~~~ 99 (249)
.+-.|+.+|.+-+-+=.=|.|.+ ++.+.-+-|..-++..+.. ...|.+. +. -+...+.-.|+.|-..
T Consensus 153 avp~fi~Ll~s~~~~v~eQavWA-LgNIagds~~~Rd~vl~~g-----~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg- 225 (514)
T KOG0166|consen 153 AVPIFIQLLSSPSADVREQAVWA-LGNIAGDSPDCRDYVLSCG-----ALDPLLRLLNKSDKLSMLRNATWTLSNLCRG- 225 (514)
T ss_pred chHHHHHHhcCCcHHHHHHHHHH-HhccccCChHHHHHHHhhc-----chHHHHHHhccccchHHHHHHHHHHHHHHcC-
Confidence 45568888887653222233332 3444444455555555421 2223333 22 2333445556665444
Q ss_pred cCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-ccchhhHHHhhcccccchHhhhccccccchhhh
Q 047448 100 KHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALL-KEPMVRSSFVQADGVKLLTPLISPASTQQSIQL 178 (249)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LL-r~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Ql 178 (249)
+. |.++ -......|..| ..++.+.| .+-..-+.-++..|. -.++-=+++.+.+.++-|+++|...+.+
T Consensus 226 k~-P~P~--~~~v~~iLp~L-~~ll~~~D--~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~----- 294 (514)
T KOG0166|consen 226 KN-PSPP--FDVVAPILPAL-LRLLHSTD--EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPK----- 294 (514)
T ss_pred CC-CCCc--HHHHHHHHHHH-HHHHhcCC--HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcc-----
Confidence 32 3221 13447788888 77787743 222222456677777 4455556777788899999999766543
Q ss_pred HHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhcc-CCChhhhHHHHHHHHHHhchh
Q 047448 179 AGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 179 lp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~-~~d~~v~~~al~~~q~~~~~~ 241 (249)
+..=|.-.||-.|-.-..=-.++-..|+=..++.||+ |+.+.+|+||--++.-+-..+
T Consensus 295 -----v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~ 353 (514)
T KOG0166|consen 295 -----VVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGN 353 (514)
T ss_pred -----cccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCC
Confidence 1222445567666666666677777888899999999 777779999998877765554
No 44
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.29 E-value=1.3e+02 Score=29.43 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=120.4
Q ss_pred HhhhchhHHH-HHHHHHHHHHHhcChHHHHHHHhccCCCCccccccc-C--hHHHHHHHHHHHHHHHhhhcCCCchhhhh
Q 047448 34 LRDIYKEETV-EYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFL-S--NWFIQEKSCKILASIVRYLKHDPFAQRCN 109 (249)
Q Consensus 34 L~~~sk~dtv-qyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL-~--D~fi~~~a~~iLt~Li~~~~~~~~~~~~~ 109 (249)
|.+ +|++-+ +|.+-.+-.|-...+.|-.+.+. ...|+-..+ + |.-++.-++.-++.+......+... -
T Consensus 175 Lak-skdirvqrnatgaLlnmThs~EnRr~LV~a----G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L---a 246 (550)
T KOG4224|consen 175 LAK-SKDIRVQRNATGALLNMTHSRENRRVLVHA----GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL---A 246 (550)
T ss_pred hcc-cchhhHHHHHHHHHHHhhhhhhhhhhhhcc----CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH---H
Confidence 444 345544 45555666676666777777776 344433322 2 8888888999999888764333222 1
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhcccccc-----------chhhh
Q 047448 110 SLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQ-----------QSIQL 178 (249)
Q Consensus 110 ~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~-----------~~~Ql 178 (249)
+..+++..-| -++...++..-+-. +.-+|.-+-...+|-..+++++++|.++.+|+..... +.+.-
T Consensus 247 qaep~lv~~L-v~Lmd~~s~kvkcq--A~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 247 QAEPKLVPAL-VDLMDDGSDKVKCQ--AGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred hcccchHHHH-HHHHhCCChHHHHH--HHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 3335566666 65555543222211 4456667778889999999999999999999543211 10000
Q ss_pred H------------HHH------HHHHHHhch---hhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 179 A------------GAM------LALAVACFD---LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 179 l------------p~M------~~lava~~d---ig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+ |-. ..-.|-||- +-...--+-+.++++-.-|+-++..+|+-+.--+|+-|-=-|.-.+
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 0 110 111223332 2333344667788888889999999999999999998876666555
Q ss_pred hchh
Q 047448 238 FLGA 241 (249)
Q Consensus 238 ~~~~ 241 (249)
-.+.
T Consensus 404 al~d 407 (550)
T KOG4224|consen 404 ALND 407 (550)
T ss_pred Hhcc
Confidence 5443
No 45
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=64.01 E-value=6.6 Score=24.83 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.0
Q ss_pred chhhHHHhhcccccchHhhhcccc
Q 047448 148 PMVRSSFVQADGVKLLTPLISPAS 171 (249)
Q Consensus 148 ~~yR~~fw~~~gv~~L~~iL~~~~ 171 (249)
++.|..+++.+|+++|+++|+...
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~ 25 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPD 25 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSS
T ss_pred HHHHHHHHHcccHHHHHHHHcCCC
Confidence 678999999999999999998543
No 46
>PF05536 Neurochondrin: Neurochondrin
Probab=62.39 E-value=21 Score=35.77 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=74.8
Q ss_pred CCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccc-cchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhh
Q 047448 131 SRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAST-QQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDL 209 (249)
Q Consensus 131 ~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~-~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l 209 (249)
..|...|+..|..+.+.|+...-.--.+-||.|.++++..+. . |...|..| |.-++ -+|.|+..+-+-
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~--------~v~dalqc--L~~Ia-s~~~G~~aLl~~ 139 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLE--------TVDDALQC--LLAIA-SSPEGAKALLES 139 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchh--------HHHHHHHH--HHHHH-cCcHhHHHHHhc
Confidence 356667999999999988776544445669999999976654 2 12333333 44455 789999999999
Q ss_pred chHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 210 KAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 210 ~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
|+=..+.+.+.+ .+...-.|+...+.++..-
T Consensus 140 g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 140 GAVPALCEIIPN-QSFQMEIALNLLLNLLSRL 170 (543)
T ss_pred CCHHHHHHHHHh-CcchHHHHHHHHHHHHHhc
Confidence 999999999888 7888899999999888654
No 47
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.45 E-value=1.1e+02 Score=32.61 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCCcccccccC-------h-HHHHHHHHHHHHHHHhhhcCC------------Cc--hhh--------h----hhhhHHH
Q 047448 70 ASEDTYEPFLS-------N-WFIQEKSCKILASIVRYLKHD------------PF--AQR--------C----NSLEVGI 115 (249)
Q Consensus 70 ~~~~py~pfL~-------D-~fi~~~a~~iLt~Li~~~~~~------------~~--~~~--------~----~~~~~~~ 115 (249)
.....|.|+++ | .-+.+.=..|||.|+..++.. ++ .+. | -..-+..
T Consensus 351 ~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tC 430 (968)
T KOG1060|consen 351 KRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTC 430 (968)
T ss_pred cchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHH
Confidence 34456777777 3 345566677899998875311 11 100 0 0111566
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhcccc-ccchhhhHHHHHHHHHHhchhhh
Q 047448 116 FCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAS-TQQSIQLAGAMLALAVACFDLSQ 194 (249)
Q Consensus 116 l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~-~~~~~Qllp~M~~lava~~dig~ 194 (249)
++|| -.++++ |+.--+..+|-.++.|+..+.-+.. +-+..|..++.+-. . .+-|...-=|||
T Consensus 431 L~gL-v~Llss--hde~Vv~eaV~vIk~Llq~~p~~h~----~ii~~La~lldti~vp----------~ARA~IiWLige 493 (968)
T KOG1060|consen 431 LNGL-VQLLSS--HDELVVAEAVVVIKRLLQKDPAEHL----EILFQLARLLDTILVP----------AARAGIIWLIGE 493 (968)
T ss_pred HHHH-HHHHhc--ccchhHHHHHHHHHHHHhhChHHHH----HHHHHHHHHhhhhhhh----------hhhceeeeeehh
Confidence 7777 666655 3444444456666666666554331 11333333332110 0 111222345899
Q ss_pred hhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 195 FIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 195 ~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
|+.+.|+----+-+. .-+-..+|+++||+|.|.-.=|+.+-+
T Consensus 494 ~~e~vpri~PDVLR~-----laksFs~E~~evKlQILnL~aKLyl~~ 535 (968)
T KOG1060|consen 494 YCEIVPRIAPDVLRK-----LAKSFSDEGDEVKLQILNLSAKLYLTN 535 (968)
T ss_pred hhhhcchhchHHHHH-----HHHhhccccchhhHHHHHhhhhheEec
Confidence 999988643322222 223467899999999998887877665
No 48
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.78 E-value=73 Score=32.29 Aligned_cols=122 Identities=11% Similarity=0.150 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhcccc-ccchhhhHHHHHHHHHHhch
Q 047448 113 VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAS-TQQSIQLAGAMLALAVACFD 191 (249)
Q Consensus 113 ~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~-~~~~~Qllp~M~~lava~~d 191 (249)
.++..|+ +.+++.......-+--.|-.+.++-+...+-..|-.++-+++|+.+|...- .. ..+.=..+-
T Consensus 546 ~~LvPw~-k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDD---------EfV~QiiyV 615 (791)
T KOG1222|consen 546 ENLVPWM-KTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDD---------EFVVQIIYV 615 (791)
T ss_pred ccccHHH-HHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccc---------hHHHHHHHH
Confidence 6688999 998864322222333356667888888888888888888999999996432 11 111113355
Q ss_pred hhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh-hhh
Q 047448 192 LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA-KYA 244 (249)
Q Consensus 192 ig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~-~~~ 244 (249)
.-+|++|--..+-++.+-..-.-...||++.|.+||+--=.|+--+-.+. ||.
T Consensus 616 F~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 616 FLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 67899996666666666667778899999999999986555544333333 665
No 49
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=59.66 E-value=28 Score=25.49 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=45.8
Q ss_pred HHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 187 VACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 187 va~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
-.|-|+-...+..|--..++..-+.=..|-.|-.|++|+|+..|-.-+.+|.
T Consensus 21 ~~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 21 SRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4688888889999999999999886666999999999999999988888875
No 50
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=58.85 E-value=45 Score=30.31 Aligned_cols=81 Identities=9% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC----hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHH
Q 047448 45 YVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS----NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQ 120 (249)
Q Consensus 45 yvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~----D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~ 120 (249)
++..+++|.++++=.| .|-.......++...++. |.|++-.|+..|+.+...|. ... +++...|-+++
T Consensus 88 ~~~~l~GD~~tE~l~~--ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~---~~R--e~vi~~f~~ll- 159 (249)
T PF06685_consen 88 FLEDLFGDFITEDLPR--ILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP---ISR--EEVIQYFRELL- 159 (249)
T ss_pred hHHHHHcchhHhHHHH--HHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC---CCH--HHHHHHHHHHH-
Confidence 3344456666555322 222222223344444555 89999999999999999953 332 45667777777
Q ss_pred HHHhcCCCCCCCChHH
Q 047448 121 LLILKKPSHPSRGVPV 136 (249)
Q Consensus 121 ~~~l~~~~~~~~~i~~ 136 (249)
..-+.. +.+++|.
T Consensus 160 ~~~l~~---~~~~~~~ 172 (249)
T PF06685_consen 160 NYFLER---NPSFLWG 172 (249)
T ss_pred HHHhcc---CchHHHH
Confidence 664543 3344544
No 51
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=58.40 E-value=41 Score=29.74 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhccchhhHHHhhcccccchHhhhccccc-----cchhhhHHHHHHHHHHhchhhhhhHhccc-hhHHHhh
Q 047448 135 PVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAST-----QQSIQLAGAMLALAVACFDLSQFIQYHPA-GRVIVTD 208 (249)
Q Consensus 135 ~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~-----~~~~Qllp~M~~lava~~dig~~v~~~p~-g~~~~~~ 208 (249)
-+++|++.-++..+..|..+.++.+ ..+++.+..... .-++| .++|-..+.++-+....+. .-...+-
T Consensus 128 ml~lR~l~NlF~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~-----~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 128 MLALRLLANLFSHPPGRQLLLSHFD-SSILELLSSLLSSLLDSNKNVR-----IALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHCTHH-TCHHHHCHCCCTTS-HHHHHHH-----HHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred HHHHHHHHHhhCCCccHHHHHhccc-chHHHHHHHHhhccccccHHHH-----HHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3489999999999999999888765 444444432221 23444 5555556778777777774 2222222
Q ss_pred hchHHHHHh-hccC-CChhhhHHHHHHHHHHhchh
Q 047448 209 LKAKERVMK-LMNH-ENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 209 l~~k~~vm~-l~~~-~d~~v~~~al~~~q~~~~~~ 241 (249)
+ ..+.+ +... .|+|+.|.+|.|+.-++...
T Consensus 202 l---~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 202 L---SSIIEVLSREESDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp H---HHHHHHCHCCHTSHHHHHHHHHHHHHHHCCS
T ss_pred H---HHHHHHhccccCCHHHHHHHHHHHHHHhccC
Confidence 2 22333 2222 79999999999999998544
No 52
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.35 E-value=1.8e+02 Score=28.19 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhccchhhHHHhhcccccchHhhhcccc-ccchhhhHHHHHHHHHHhchhhhhhHhcc-chhHHHhhhchH
Q 047448 135 PVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAS-TQQSIQLAGAMLALAVACFDLSQFIQYHP-AGRVIVTDLKAK 212 (249)
Q Consensus 135 ~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~-~~~~~Qllp~M~~lava~~dig~~v~~~p-~g~~~~~~l~~k 212 (249)
.+|...|..|-..+..+..+++.+|.+.++.+..+-+ +.+-+| .++|+.|. .+=.-| ..+.++|.=+|-
T Consensus 305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~-----~~~a~i~~----l~LR~pdhsa~~ie~G~a~ 375 (461)
T KOG4199|consen 305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQ-----EVMAIISI----LCLRSPDHSAKAIEAGAAD 375 (461)
T ss_pred HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHH-----HHHHHHHH----HHhcCcchHHHHHhcchHH
Confidence 3578888999999999999999999999998885433 332223 33343332 333455 566677764455
Q ss_pred HHHHhhccCC-ChhhhHHHHHHHHHHhchh
Q 047448 213 ERVMKLMNHE-NTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 213 ~~vm~l~~~~-d~~v~~~al~~~q~~~~~~ 241 (249)
..|-.+=.|| ..-|+++|-..+--++++.
T Consensus 376 ~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 376 LAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 5555555677 5678999988887777765
No 53
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=54.19 E-value=2.6e+02 Score=28.60 Aligned_cols=190 Identities=18% Similarity=0.187 Sum_probs=105.4
Q ss_pred hhhhcchhHHHHHH-HHHhhhchh--HHHHHHHHHHHHHHhcChHHHHHHHhcc--CCCCcccccccChHHHHHHHHHHH
Q 047448 18 LLDDDGPSYVRVFV-SILRDIYKE--ETVEYVLALIDEMLTANPKRARLFHDKS--LASEDTYEPFLSNWFIQEKSCKIL 92 (249)
Q Consensus 18 ~l~~~~~~y~~~fv-~LL~~~sk~--dtvqyvL~LidDlL~e~p~rv~~F~~~~--~~~~~py~pfL~D~fi~~~a~~iL 92 (249)
+...-.+.-++.|+ ++|.++-.+ .+....+-+++-|....|.-.++....- .-.+-.|.- ..=|+..+-..+
T Consensus 243 i~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT---~~evr~a~~~~l 319 (569)
T KOG1242|consen 243 IMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDT---KPEVRKAGIETL 319 (569)
T ss_pred HHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccC---CHHHHHHHHHHH
Confidence 33333344455554 777777555 8888888899988888887666655410 001111100 334555555555
Q ss_pred HHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhh---cccccchHhhhcc
Q 047448 93 ASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQ---ADGVKLLTPLISP 169 (249)
Q Consensus 93 t~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~---~~gv~~L~~iL~~ 169 (249)
.++-+- - + +..+..|+.-| -+.+.. ++++.+. |+.+|.+. .|+. ...+..+++||++
T Consensus 320 ~~~~sv---i-d----N~dI~~~ip~L-ld~l~d---p~~~~~e---~~~~L~~t-----tFV~~V~~psLalmvpiL~R 379 (569)
T KOG1242|consen 320 LKFGSV---I-D----NPDIQKIIPTL-LDALAD---PSCYTPE---CLDSLGAT-----TFVAEVDAPSLALMVPILKR 379 (569)
T ss_pred HHHHHh---h-c----cHHHHHHHHHH-HHHhcC---cccchHH---HHHhhcce-----eeeeeecchhHHHHHHHHHH
Confidence 555443 1 0 12245565666 555544 5566554 56666554 4555 4558889999976
Q ss_pred cccc--chhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhc-hHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 170 ASTQ--QSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLK-AKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 170 ~~~~--~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~-~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
+.+. -+ +.=.++. =+|-.++..++-+.+..-++ .=..+-+-+..++||||+.|.+|+..+.
T Consensus 380 ~l~eRst~------~kr~t~~--IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 380 GLAERSTS------IKRKTAI--IIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALL 443 (569)
T ss_pred HHhhccch------hhhhHHH--HHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 5310 00 0001111 14556666666555554444 2233445556679999999999997765
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=53.98 E-value=15 Score=28.31 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=24.3
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
.=.-|...++++|++|||.|..|.-.+.-.
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKV 57 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999888776543
No 55
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=53.20 E-value=38 Score=32.81 Aligned_cols=114 Identities=17% Similarity=0.174 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCCc
Q 047448 27 VRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDPF 104 (249)
Q Consensus 27 ~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~ 104 (249)
.+.|..||++ .|+-+-+-+-=-|..+-..+.+-+++..+. +--.|.-++|. |-+|+-.||--++...+.|..+|+
T Consensus 329 L~a~~~lLs~-~ke~irKEaCWTiSNITAGnteqiqavid~--nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD 405 (526)
T COG5064 329 LKAFRSLLSS-PKENIRKEACWTISNITAGNTEQIQAVIDA--NLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPD 405 (526)
T ss_pred HHHHHHHhcC-hhhhhhhhhheeecccccCCHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCch
Confidence 3445555543 233333333333444444555666666552 12234555555 999999999999999999988887
Q ss_pred hhhhhhhh--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccch
Q 047448 105 AQRCNSLE--VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPM 149 (249)
Q Consensus 105 ~~~~~~~~--~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~ 149 (249)
.- ..+ .+|+.=| |++|.-. ++.-++++.-|+...|+.-+
T Consensus 406 ~i---ryLv~qG~IkpL-c~~L~~~--dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 406 II---RYLVSQGFIKPL-CDLLDVV--DNKIIEVALDAIENILKVGE 446 (526)
T ss_pred HH---HHHHHccchhHH-HHHHhcc--CccchhhhHHHHHHHHhhhh
Confidence 52 333 7788888 8888653 67778888888887777643
No 56
>PF05536 Neurochondrin: Neurochondrin
Probab=51.76 E-value=1.3e+02 Score=30.28 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=35.8
Q ss_pred CChHHHHHHHHHHhccchhhHHHhhcccccchHhhhcccc
Q 047448 132 RGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAS 171 (249)
Q Consensus 132 ~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~ 171 (249)
.-+.-|.+||..+...++=++.+++.++++.|+.++....
T Consensus 114 ~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~ 153 (543)
T PF05536_consen 114 ETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS 153 (543)
T ss_pred hHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc
Confidence 5566699999999999999999999999999999997643
No 57
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.94 E-value=1.4e+02 Score=31.67 Aligned_cols=94 Identities=14% Similarity=0.283 Sum_probs=55.9
Q ss_pred hhhhcCCCHHHHhhhhh------hcchhHHHHHHHHHhhh--chhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCccc
Q 047448 4 LRRYDNRSESHRAQLLD------DDGPSYVRVFVSILRDI--YKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTY 75 (249)
Q Consensus 4 I~~~Dk~~~e~r~~~l~------~~~~~y~~~fv~LL~~~--sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py 75 (249)
-++++|.+.+.|.+.++ -||+.+-.++.++.+-+ +++.++|=+|-..=|++---.+--++|++-=. .-+.|
T Consensus 26 k~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMIL-vcna~ 104 (948)
T KOG1058|consen 26 KEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMIL-VCNAY 104 (948)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHH-HHHHH
Confidence 35567766666554443 37777777777777665 67888888887777766433232333333000 00223
Q ss_pred ccccC--hHHHHHHHHHHHHHHHhh
Q 047448 76 EPFLS--NWFIQEKSCKILASIVRY 98 (249)
Q Consensus 76 ~pfL~--D~fi~~~a~~iLt~Li~~ 98 (249)
+.=|. ++||+=.+.+.|.+|=..
T Consensus 105 RkDLQHPNEyiRG~TLRFLckLkE~ 129 (948)
T KOG1058|consen 105 RKDLQHPNEYIRGSTLRFLCKLKEP 129 (948)
T ss_pred hhhccCchHhhcchhhhhhhhcCcH
Confidence 33334 788888888888877444
No 58
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=50.36 E-value=9 Score=31.11 Aligned_cols=26 Identities=23% Similarity=0.657 Sum_probs=22.6
Q ss_pred hchhhhhhHhccchhHHHhhhchHHH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKER 214 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~~ 214 (249)
.||+..|...||.|-.+|-...||..
T Consensus 29 VYDvT~Fl~eHPGG~~vLl~~AGkDa 54 (124)
T KOG0537|consen 29 VYDVTSFLDEHPGGEDVLLEYAGKDA 54 (124)
T ss_pred EEeccchhhhCCChHHHHHHHhchhh
Confidence 48999999999999888888887863
No 59
>PRK09687 putative lyase; Provisional
Probab=50.28 E-value=68 Score=29.25 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.3
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+-..+.+++.++|++||++|..+++++
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 445678889999999999999999987
No 60
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.90 E-value=3e+02 Score=29.99 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=42.7
Q ss_pred HHHHHHhchhhhhh-HhccchhHHHhhhchHHHHHhhcc-CCChhhhHHHHHHHHHHhchhhh
Q 047448 183 LALAVACFDLSQFI-QYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLGAKY 243 (249)
Q Consensus 183 ~~lava~~dig~~v-~~~p~g~~~~~~l~~k~~vm~l~~-~~d~~v~~~al~~~q~~~~~~~~ 243 (249)
---|=||.-++.|. --++.--... .+=+-+|..|. +.+--||-||-+|.|-+|.+.+-
T Consensus 477 ~Lrarac~vl~~~~~~df~d~~~l~---~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 477 YLRARACWVLSQFSSIDFKDPNNLS---EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHH---HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 33467899899987 3444333332 35667888888 77888999999999999998753
No 61
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=48.36 E-value=1.9e+02 Score=26.82 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=87.4
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHH-HHHHHHHHhcChHHHHHHHhccCCCCcccccccC-----hHHHH
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYV-LALIDEMLTANPKRARLFHDKSLASEDTYEPFLS-----NWFIQ 85 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyv-L~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~-----D~fi~ 85 (249)
++.|..++.+.-+.|...|++--.+....|+++-. |--|+-|+..+..-+-.|+-. .+.-.--|+ .+--+
T Consensus 110 pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~----TeIVPlCLrime~GSelSK 185 (293)
T KOG3036|consen 110 PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLT----TEIVPLCLRIMESGSELSK 185 (293)
T ss_pred cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHH----hhhHHHHHHHHhcccHHHH
Confidence 57788999999999999999888887778888853 446999998776445555541 121111233 56777
Q ss_pred HHHHHHHHHHHhhhcCCCchhh-hhhh-----hHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhh
Q 047448 86 EKSCKILASIVRYLKHDPFAQR-CNSL-----EVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQ 156 (249)
Q Consensus 86 ~~a~~iLt~Li~~~~~~~~~~~-~~~~-----~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~ 156 (249)
..|..|+.+++.. +.-+.= |.-. +.-.++=....+.+.| ..+-+..+|||+..|--++..|.+.-.
T Consensus 186 tvA~fIlqKIlld---D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 186 TVATFILQKILLD---DVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLSDNPRARAALRS 257 (293)
T ss_pred HHHHHHHHHHhhc---cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 8899999999887 322210 1001 1111222202222444 335566699999999999999887654
No 62
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.26 E-value=1.7e+02 Score=31.20 Aligned_cols=148 Identities=20% Similarity=0.211 Sum_probs=90.1
Q ss_pred cchhHHHHHHHHHhhhchh---HHHHHHHHHHHHHHhcChHHHHHHHhccC-CCCcccccccChHHHHHHHHHHHHHHHh
Q 047448 22 DGPSYVRVFVSILRDIYKE---ETVEYVLALIDEMLTANPKRARLFHDKSL-ASEDTYEPFLSNWFIQEKSCKILASIVR 97 (249)
Q Consensus 22 ~~~~y~~~fv~LL~~~sk~---dtvqyvL~LidDlL~e~p~rv~~F~~~~~-~~~~py~pfL~D~fi~~~a~~iLt~Li~ 97 (249)
......--||.+|..++++ ++..-+|.-|-|||..-|+--..++..-- .--+| +.=|--+|++.|..|.|
T Consensus 297 ~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDp------qnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 297 ELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDP------QNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCc------chhhhhhHHHHHHHHHh
Confidence 3333333467888888874 67778899999999999966555554110 01111 34567778888888888
Q ss_pred hhcCCCchhhh---------------------------------------hhhhHHHHHHHHHHHhcCCCCCC-------
Q 047448 98 YLKHDPFAQRC---------------------------------------NSLEVGIFCYIQLLILKKPSHPS------- 131 (249)
Q Consensus 98 ~~~~~~~~~~~---------------------------------------~~~~~~~l~wL~~~~l~~~~~~~------- 131 (249)
. .|.|..+ ..++.-||... +..+...+-++
T Consensus 371 ~---HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lF-k~l~~~~~~d~~k~~k~~ 446 (988)
T KOG2038|consen 371 K---HPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLF-KTLVGKKDKDNRKDDKGA 446 (988)
T ss_pred h---CCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHH-HHHHHhhhhhhhhcccch
Confidence 6 4443220 13335566665 66553221111
Q ss_pred ------------------CChHHHHHHHHHHhccchhhHHHhhc------ccccchHhhhccccccchhhhH
Q 047448 132 ------------------RGVPVAINCLAALLKEPMVRSSFVQA------DGVKLLTPLISPASTQQSIQLA 179 (249)
Q Consensus 132 ------------------~~i~~~v~~Lq~LLr~~~yR~~fw~~------~gv~~L~~iL~~~~~~~~~Qll 179 (249)
.-++.--|.|.+||..=.--..|.+. +-+++|+.|...+.++.++|-+
T Consensus 447 ~k~kks~k~~k~e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~ddk~~~~~~tLFkl~HssNFNTsVQaL 518 (988)
T KOG2038|consen 447 AKKKKSNKKDKKEEVSTESPIELNSRLLSALLTGVNRAFPFAQTADDKLEEQMKTLFKLTHSSNFNTSVQAL 518 (988)
T ss_pred hhcccccccchhhhhcccchhhhhHHHHHHHHhcccccCCcccCchHHHHHHhHHHHHHHhhcccchhHHHH
Confidence 12334556888888654433455553 2289999999888889999976
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=48.03 E-value=54 Score=35.52 Aligned_cols=179 Identities=20% Similarity=0.228 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHH
Q 047448 46 VLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLI 123 (249)
Q Consensus 46 vL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~ 123 (249)
+|-++.|+++---+...-||..-.. -.-|-+. -.-|+-+|++.|+-|+..+... +..+...-| -.-
T Consensus 153 ~lDil~d~lsr~g~ll~~fh~~il~---~l~~ql~s~R~aVrKkai~~l~~la~~~~~~--------ly~~li~~L-l~~ 220 (1233)
T KOG1824|consen 153 VLDILADVLSRFGTLLPNFHLSILK---CLLPQLQSPRLAVRKKAITALGHLASSCNRD--------LYVELIEHL-LKG 220 (1233)
T ss_pred HHHHHHHHHHhhcccCcchHHHHHH---HHhhcccChHHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHH-Hhc
Confidence 3446666665444444445541110 0111122 6789999999999999984321 223344444 333
Q ss_pred hcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccc---cc---cchhhhH-------HH-H-----HH
Q 047448 124 LKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPA---ST---QQSIQLA-------GA-M-----LA 184 (249)
Q Consensus 124 l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~---~~---~~~~Qll-------p~-M-----~~ 184 (249)
+..+ .....+++-|+||.+++|.-.+|..=.-...++.+.+..+.. -. +--+|-+ |. | .+
T Consensus 221 L~~~-~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei 299 (1233)
T KOG1824|consen 221 LSNR-TQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI 299 (1233)
T ss_pred cCCC-CchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence 3332 355678889999999999999987543333466666655221 11 1122221 11 0 00
Q ss_pred HHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChh--------------hhHHHHHHHHHHhchh-hhh
Q 047448 185 LAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE--------------VTKSALLCIQRLFLGA-KYA 244 (249)
Q Consensus 185 lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~--------------v~~~al~~~q~~~~~~-~~~ 244 (249)
+. =+-+|+.|.|+=-.=- +--+.-|.++..+|.+ ||++|.+|+-.+++.. ||+
T Consensus 300 ~~----l~l~yisYDPNy~yd~---~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L 367 (1233)
T KOG1824|consen 300 IN----LCLSYISYDPNYNYDT---EEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEML 367 (1233)
T ss_pred HH----HHHHHhccCCCCCCCC---ccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHH
Confidence 00 0123444445322211 1234567777777666 9999999999999887 887
No 64
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=47.84 E-value=68 Score=30.73 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHHHHh---cChHHHHHHHhccCCCCcccccccC---------hHHHHHHHHHHHHHHHhhhcCCCchh
Q 047448 39 KEETVEYVLALIDEMLT---ANPKRARLFHDKSLASEDTYEPFLS---------NWFIQEKSCKILASIVRYLKHDPFAQ 106 (249)
Q Consensus 39 k~dtvqyvL~LidDlL~---e~p~rv~~F~~~~~~~~~py~pfL~---------D~fi~~~a~~iLt~Li~~~~~~~~~~ 106 (249)
+..++|.+|.++..++. ....+.+-+.+. .+.-..|+ -.-|-..|..+++.+|-. +|..-
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~-----s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~n---ePT~~ 144 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDS-----SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHN---EPTSF 144 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccch-----hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhc---CCchh
Confidence 45677778888887777 112444443331 11111122 234566788888888887 66532
Q ss_pred hh---hhhhHHHHHHHHH-HHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHH
Q 047448 107 RC---NSLEVGIFCYIQL-LILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAM 182 (249)
Q Consensus 107 ~~---~~~~~~~l~wL~~-~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M 182 (249)
+. .+..+.|++-+ . .-. -| ..+.+.+--.++.++.=++.-.+.|.+.+-++.+++++.....= .+|
T Consensus 145 ~~l~e~Gl~~~~L~~i-~~~~i-~~--s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~------~~l 214 (379)
T PF06025_consen 145 SILQEAGLIDAFLDAI-TAKGI-LP--SSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYV------KAL 214 (379)
T ss_pred HHHHHcCChHHHHHHH-hccCC-CC--cHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHH------HHh
Confidence 20 23336677777 4 211 11 23444445577888888999999999988899999998654210 001
Q ss_pred ----HHHHHHhchhhhhhHhccchhHHHhh--hchHHHHHhhccCCCh
Q 047448 183 ----LALAVACFDLSQFIQYHPAGRVIVTD--LKAKERVMKLMNHENT 224 (249)
Q Consensus 183 ----~~lava~~dig~~v~~~p~g~~~~~~--l~~k~~vm~l~~~~d~ 224 (249)
.+-.+++ -+=|++||||.=|..+-+ ...=.+|..+-....+
T Consensus 215 ~~~d~a~~lG~-~~DEL~RH~p~Lk~~i~~~ii~~l~~l~~~g~~~~~ 261 (379)
T PF06025_consen 215 RRRDTASNLGN-SFDELMRHHPSLKPDIIDAIIKILDRLVELGKDKAP 261 (379)
T ss_pred cccchHHHHHH-HHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 2334444 488999999976665433 2233344444444443
No 65
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=47.82 E-value=2.2e+02 Score=31.26 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=25.7
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHHhchhhh
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRLFLGAKY 243 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~~~ 243 (249)
+-+.+.+-++|.|..|||-|-+-+.++-.+-|+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~ 374 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP 374 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcH
Confidence 344555667899999999999999998766554
No 66
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=47.09 E-value=57 Score=23.88 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=43.2
Q ss_pred HhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 188 ACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 188 a~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
.|.|+=.-.+..|-...++..-+.=..|=.|-.|+|++|+..|-.-+.+|.
T Consensus 20 ~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 20 RCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHHHHHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 477777777789999999999885556889999999999999988888876
No 67
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=47.04 E-value=1.1e+02 Score=28.03 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=83.4
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHH-HHHHHHHHHhcC-hHHHHHHHhccCCCCcccccccC-----hHHH
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEY-VLALIDEMLTAN-PKRARLFHDKSLASEDTYEPFLS-----NWFI 84 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqy-vL~LidDlL~e~-p~rv~~F~~~~~~~~~py~pfL~-----D~fi 84 (249)
+|.|..++.++-+.|..+|++.-++...-|.++. .|-.|+-|+..| ++-+.++.+ .+....-|+ ....
T Consensus 81 petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-----tEiiplcLr~me~GselS 155 (262)
T PF04078_consen 81 PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-----TEIIPLCLRIMEFGSELS 155 (262)
T ss_dssp TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-----TTHHHHHHHHHHHS-HHH
T ss_pred hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-----hchHHHHHHHHHhccHHH
Confidence 6888999999999999999987766555566553 355789998755 566666665 344555566 7888
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhh---h--hhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhh
Q 047448 85 QEKSCKILASIVRYLKHDPFAQRC---N--SLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQ 156 (249)
Q Consensus 85 ~~~a~~iLt~Li~~~~~~~~~~~~---~--~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~ 156 (249)
...|..|+.+++.....-... | + .++...++-.-..+...| ..+-+.-.|+|+..|--++..|.+.-+
T Consensus 156 KtvAtfIlqKIL~dd~GL~yi--C~t~eRf~av~~vL~~mV~~l~~~p--S~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 156 KTVATFILQKILLDDVGLNYI--CQTAERFFAVAMVLNKMVEQLVKQP--SPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHHHHHSHHHHHHH--TSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHcchhHHHHH--hcCHHHHHHHHHHHHHHHHHHccCC--ChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 889999999999872100000 0 0 111112222201122333 234445589999999999999988765
No 68
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=46.94 E-value=2.4e+02 Score=26.15 Aligned_cols=144 Identities=18% Similarity=0.264 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcc--cccccC-------hHHHHHHHHHHHHHHHhhhcCCCchhhhhhh
Q 047448 41 ETVEYVLALIDEMLTANPKRARLFHDKSLASEDT--YEPFLS-------NWFIQEKSCKILASIVRYLKHDPFAQRCNSL 111 (249)
Q Consensus 41 dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~p--y~pfL~-------D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~ 111 (249)
--|=++|+|+-=+ .++|++-..|.+ ..-| +-|||. +++.++.|.-+++.|+.. +. .+
T Consensus 94 nRVcnaL~LlQcv-ASHpdTr~~FL~----A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~---dd-----~e- 159 (293)
T KOG3036|consen 94 NRVCNALALLQCV-ASHPDTRRAFLR----AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKN---DD-----QE- 159 (293)
T ss_pred chHHHHHHHHHHH-hcCcchHHHHHH----ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhc---Cc-----HH-
Confidence 4577888877655 489999999987 2223 457887 899999999999999887 31 12
Q ss_pred hHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhch
Q 047448 112 EVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFD 191 (249)
Q Consensus 112 ~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~d 191 (249)
..++| ++ ++-|+-|++- |=...+ --+++.. + ..-=|.+.|
T Consensus 160 ---Vi~fL----l~-----TeIVPlCLri---me~GSe---------lSKtvA~------f----------IlqKIlldD 199 (293)
T KOG3036|consen 160 ---VIRFL----LT-----TEIVPLCLRI---MESGSE---------LSKTVAT------F----------ILQKILLDD 199 (293)
T ss_pred ---HHHHH----HH-----hhhHHHHHHH---HhcccH---------HHHHHHH------H----------HHHHHhhcc
Confidence 22333 11 2334433322 111111 0111100 0 111344555
Q ss_pred hhhh-h-HhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 192 LSQF-I-QYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 192 ig~~-v-~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
.|=+ + .-|.|=-.|-.- -+..||.|.+.+++.+-+++++|.+++=-|
T Consensus 200 ~GL~YiCqt~eRF~av~~~--L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 200 VGLYYICQTAERFSAVALV--LGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred ccHHHHHHhHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 5421 1 111111222223 356899999999999999999999987644
No 69
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.18 E-value=1.3e+02 Score=31.99 Aligned_cols=134 Identities=15% Similarity=0.220 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHhcC--------hH--------HHHHHHhccCCCCcccccccC--hHHHH
Q 047448 25 SYVRVFVSILRDIY-KEETVEYVLALIDEMLTAN--------PK--------RARLFHDKSLASEDTYEPFLS--NWFIQ 85 (249)
Q Consensus 25 ~y~~~fv~LL~~~s-k~dtvqyvL~LidDlL~e~--------p~--------rv~~F~~~~~~~~~py~pfL~--D~fi~ 85 (249)
.-++.|++.|.+-- ..|+++|+|--+--++..+ +. .++.|....+ .-...-.|+. |-+|+
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd-~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQD-NITLLLQSLEEFDFHVR 139 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCch-hHHHHHHHHHhhchhhh
Confidence 33567888887764 5799999998655555433 21 2444444211 1111111222 77899
Q ss_pred HHHHHHHHHHHhhhcCCCchhh-h----hhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhccc-
Q 047448 86 EKSCKILASIVRYLKHDPFAQR-C----NSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADG- 159 (249)
Q Consensus 86 ~~a~~iLt~Li~~~~~~~~~~~-~----~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~g- 159 (249)
.-|-..++.|++. +|.... + +..++.+.+-| +-+.-.-+ .-++=.|++|.+.+..=+-.+.-++
T Consensus 140 ~~aIqLlsalls~---r~~e~q~~ll~~P~gIS~lmdlL-----~DsrE~IR--Ne~iLlL~eL~k~n~~IQKlVAFENa 209 (970)
T KOG0946|consen 140 LYAIQLLSALLSC---RPTELQDALLVSPMGISKLMDLL-----RDSREPIR--NEAILLLSELVKDNSSIQKLVAFENA 209 (970)
T ss_pred hHHHHHHHHHHhc---CCHHHHHHHHHCchhHHHHHHHH-----hhhhhhhc--hhHHHHHHHHHccCchHHHHHHHHHH
Confidence 9999999999988 654321 1 11124444444 21111111 2278899999998876665555444
Q ss_pred ccchHhhhcc
Q 047448 160 VKLLTPLISP 169 (249)
Q Consensus 160 v~~L~~iL~~ 169 (249)
+..|++||+.
T Consensus 210 FerLfsIIee 219 (970)
T KOG0946|consen 210 FERLFSIIEE 219 (970)
T ss_pred HHHHHHHHHh
Confidence 7777777754
No 70
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=43.89 E-value=9.7 Score=31.67 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=32.4
Q ss_pred hchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALL 232 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~ 232 (249)
.+|+..|.++||.|-..+=+--|+. --.+.+.-..=|.||.|+
T Consensus 92 VYnVt~Yl~fHPgG~d~lmk~aGrD-~T~~Fnk~H~WVN~e~LL 134 (145)
T KOG0536|consen 92 VYNVTAYLDFHPGGVDELMKHAGRD-ATKLFNKYHAWVNYEELL 134 (145)
T ss_pred EEecccccccCCCCHHHHHHhcCcc-hHHHHHHHHHHhcHHHHH
Confidence 5899999999999988777766665 445555556677777776
No 71
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=42.97 E-value=20 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.0
Q ss_pred HHHhhc-cCCChhhhHHHHHHHHHH
Q 047448 214 RVMKLM-NHENTEVTKSALLCIQRL 237 (249)
Q Consensus 214 ~vm~l~-~~~d~~v~~~al~~~q~~ 237 (249)
.+++.+ +++|+.||.+|..+..++
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~ 27 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL 27 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 456667 999999999999998854
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.17 E-value=4.5e+02 Score=27.96 Aligned_cols=138 Identities=9% Similarity=0.112 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGV 160 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv 160 (249)
|.-|+..|-+++--|+.. +|+.- -+..+-||..+ . .+ .|.++ -|+.+.-.-.--.+-.- ....-+
T Consensus 194 Dp~V~SAAV~VICELArK---nPkny--L~LAP~ffkll-t---tS---sNNWm--LIKiiKLF~aLtplEPR-LgKKLi 258 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARK---NPQNY--LQLAPLFYKLL-V---TS---SNNWV--LIKLLKLFAALTPLEPR-LGKKLI 258 (877)
T ss_pred CchHHHHHHHHHHHHHhh---CCccc--ccccHHHHHHH-h---cc---CCCee--hHHHHHHHhhccccCch-hhhhhh
Confidence 778888888888888877 65431 12337777777 2 22 34444 55554322111100000 001227
Q ss_pred cchHhhhccccc-cchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhc
Q 047448 161 KLLTPLISPAST-QQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 161 ~~L~~iL~~~~~-~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~ 239 (249)
++|.+++.+.+. .+=|.-+. +++|| -.-.-+|.--.-+.- |=+++-.+..+.|+|.||=+|+|..|+.-
T Consensus 259 eplt~li~sT~AmSLlYECvN--TVVa~------s~s~g~~d~~asiqL--CvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 259 EPITELMESTVAMSLLYECVN--TVVAV------SMSSGMSDHSASIQL--CVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred hHHHHHHHhhHHHHHHHHHHH--Hheee------hhccCCCCcHHHHHH--HHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 888888854321 01111000 22222 000011111111111 33445567788888888888888888876
Q ss_pred hhhh
Q 047448 240 GAKY 243 (249)
Q Consensus 240 ~~~~ 243 (249)
.++|
T Consensus 329 tHp~ 332 (877)
T KOG1059|consen 329 THPK 332 (877)
T ss_pred hCHH
Confidence 6644
No 73
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.86 E-value=1.1e+02 Score=31.99 Aligned_cols=98 Identities=13% Similarity=0.231 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhH-HHHHHHHHHhchhhhhhHhccchhHHHhhhc
Q 047448 132 RGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLA-GAMLALAVACFDLSQFIQYHPAGRVIVTDLK 210 (249)
Q Consensus 132 ~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qll-p~M~~lava~~dig~~v~~~p~g~~~~~~l~ 210 (249)
+-|...+.-+-+-+..+.++..+ .++++.|..+|....-+ .+ ++|.+|.=.|-|.+++...-=. -+-++-
T Consensus 104 ~lIr~tvGivITTI~s~~~~~~w--pelLp~L~~~L~s~d~n----~~EgA~~AL~KIcEDsa~~lds~~~-~rpl~~-- 174 (885)
T KOG2023|consen 104 PLIRATVGIVITTIASTGGLQHW--PELLPQLCELLDSPDYN----TCEGAFGALQKICEDSAQFLDSDVL-TRPLNI-- 174 (885)
T ss_pred HHHHhhhhheeeeeecccccccc--hhHHHHHHHHhcCCccc----ccchhHHHHHHHHhhhHHHHhhhcc-cCchHH--
Confidence 35555555555555555555543 56778888887543200 00 2246777889999998765211 111221
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
.-.+..+...|+.|.+|.+|+.|+-.++
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 3567889999999999999999984443
No 74
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=40.19 E-value=45 Score=28.98 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.5
Q ss_pred HhhccCCChhhhHHHHHHHHHHhchhh
Q 047448 216 MKLMNHENTEVTKSALLCIQRLFLGAK 242 (249)
Q Consensus 216 m~l~~~~d~~v~~~al~~~q~~~~~~~ 242 (249)
-+-+++.|++|...+|.++|+++...+
T Consensus 86 k~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 86 KRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 356889999999999999999955443
No 75
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=39.62 E-value=56 Score=34.10 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=59.8
Q ss_pred hhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHH
Q 047448 155 VQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCI 234 (249)
Q Consensus 155 w~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~ 234 (249)
|.--.++-.+..|...-. .+.+.|..=|-+.+.-.-.+|.-+.++||-.++..|+.|++++|+.+|.=|.
T Consensus 230 w~d~~lpe~i~mL~~q~~----------~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaL 299 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDP----------SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGAL 299 (717)
T ss_pred ccccccHHHHHHHhccCh----------hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHH
Confidence 776666666666653322 3336777768888888899999999999999999999999999999999988
Q ss_pred HHHhc
Q 047448 235 QRLFL 239 (249)
Q Consensus 235 q~~~~ 239 (249)
-.++=
T Consensus 300 RNLvf 304 (717)
T KOG1048|consen 300 RNLVF 304 (717)
T ss_pred Hhhhc
Confidence 77653
No 76
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=39.15 E-value=57 Score=31.17 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=43.8
Q ss_pred hchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchhhhh
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYA 244 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~~~~ 244 (249)
+|++....+.||..|.-+.--.--++|+.++=+++++||--|++.+--++.+.+.+
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l 59 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL 59 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH
Confidence 58899999999988887666556677776666666999999999987777665544
No 77
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=38.89 E-value=7.7 Score=33.15 Aligned_cols=28 Identities=36% Similarity=0.682 Sum_probs=24.8
Q ss_pred hchhhhhhHhccchhHHHhhhchHHHHH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKERVM 216 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~~vm 216 (249)
.||+..|+..||.|-.++-...||..--
T Consensus 74 VyDvs~fl~~HPGGe~ii~~~~g~Dat~ 101 (164)
T COG5274 74 VYDVSQFLDEHPGGEDIIKDTAGKDATK 101 (164)
T ss_pred EEEhhhccccCCCcceeehhccCchhhh
Confidence 6999999999999999999998886543
No 78
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=37.01 E-value=2.3e+02 Score=29.69 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhh--hhhh-h-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhh
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQR--CNSL-E-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQ 156 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~--~~~~-~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~ 156 (249)
+..+.+.++-+|-.|... ...+.. +..+ . ++-+..| -.+++++ +..-+..++.+|--|-+.+.-|...-
T Consensus 532 n~~TlEasaGaLQNltA~---~~~~~~~~~~~v~~kekgl~~l-~~ll~~~--~~~vv~s~a~~LrNls~d~rnk~lig- 604 (717)
T KOG1048|consen 532 NDNTLEASAGALQNLTAG---LWTWSEYMRGAVFRKEKGLPPL-VELLRND--DSDVVRSAAGALRNLSRDIRNKELIG- 604 (717)
T ss_pred chHHHHHhhhhHhhhhcc---CCcchhHHHhhhhhhccCccHH-HHHHhcC--CchHHHHHHHHHhhhccCchhhhhhh-
Confidence 456666667777776665 222211 0011 1 3445666 6666775 44556667788888888888887776
Q ss_pred cccccchHhhhccccc--cchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCC--hhhhHHHHH
Q 047448 157 ADGVKLLTPLISPAST--QQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHEN--TEVTKSALL 232 (249)
Q Consensus 157 ~~gv~~L~~iL~~~~~--~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d--~~v~~~al~ 232 (249)
..+++-|+..|....+ .+.- .+++.+||=|-++++.-|.+-+-+-..++-.+++.+-.... .++|+-++.
T Consensus 605 k~a~~~lv~~Lp~~~~~~~~se------dtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~v 678 (717)
T KOG1048|consen 605 KYAIPDLVRCLPGSGPSTSLSE------DTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSV 678 (717)
T ss_pred cchHHHHHHhCcCCCCCcCchH------HHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHH
Confidence 6679999999965432 1111 67788999999999988877666667788888887776543 355555544
Q ss_pred H
Q 047448 233 C 233 (249)
Q Consensus 233 ~ 233 (249)
.
T Consensus 679 L 679 (717)
T KOG1048|consen 679 L 679 (717)
T ss_pred H
Confidence 3
No 79
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=36.38 E-value=6.3e+02 Score=27.91 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=41.8
Q ss_pred hhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh--hhhhhh
Q 047448 191 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA--KYASFL 247 (249)
Q Consensus 191 dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~--~~~~~~ 247 (249)
=+||.=|+.|- .-.-+-|..|.+-.+|++++||.-|=.|.+.+=+.| +|+-|+
T Consensus 842 slGElgr~~~~----s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfi 896 (1233)
T KOG1824|consen 842 SLGELGRRKDL----SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFI 896 (1233)
T ss_pred hhhhhccCCCC----CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHH
Confidence 36776555443 334567889999999999999999999999999866 888664
No 80
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.11 E-value=1.3e+02 Score=30.11 Aligned_cols=153 Identities=14% Similarity=0.230 Sum_probs=90.3
Q ss_pred HHHhhhhhhcch-hHHHHHHHHHhhh---chh--HHHHHHHHHHHHHHhcChHHHHHHHhccCCCCccc---ccccC--h
Q 047448 13 SHRAQLLDDDGP-SYVRVFVSILRDI---YKE--ETVEYVLALIDEMLTANPKRARLFHDKSLASEDTY---EPFLS--N 81 (249)
Q Consensus 13 e~r~~~l~~~~~-~y~~~fv~LL~~~---sk~--dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py---~pfL~--D 81 (249)
+-.+.++++=.+ +...+++.=+++. .++ |-|-+.|..+.-|+.-+|+....-.+. .-.-| .-+-+ -
T Consensus 163 egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~---~ll~WLL~rl~~k~~f 239 (536)
T KOG2734|consen 163 EGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ---GLLSWLLKRLKGKAAF 239 (536)
T ss_pred ccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh---hHHHHHHHHHhcccCc
Confidence 333344444332 3455555555554 243 689999999999999999777764442 11111 11111 2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhh-hhhhhHHHHHHHHHHHhc-CCCC--CCCChHHHHHHHHHHhccchhhHHHhhc
Q 047448 82 WFIQEKSCKILASIVRYLKHDPFAQR-CNSLEVGIFCYIQLLILK-KPSH--PSRGVPVAINCLAALLKEPMVRSSFVQA 157 (249)
Q Consensus 82 ~fi~~~a~~iLt~Li~~~~~~~~~~~-~~~~~~~~l~wL~~~~l~-~~~~--~~~~i~~~v~~Lq~LLr~~~yR~~fw~~ 157 (249)
.....-|+-||+.+++.+..+..... .++. ..+++-| .-.-+ .|.. ..++.+---.||.++|..++.|.-|.+.
T Consensus 240 ~aNk~YasEiLaillq~s~e~~~~~~~l~Gi-D~lL~~l-a~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~ 317 (536)
T KOG2734|consen 240 DANKQYASEILAILLQNSDENRKLLGPLDGI-DVLLRQL-AVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG 317 (536)
T ss_pred chhHHHHHHHHHHHhccCchhhhhhcCcccH-HHHHhhc-chhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc
Confidence 35667799999999998643211100 0111 2333333 22222 2222 2355666788999999999999999999
Q ss_pred ccccchHhhhccc
Q 047448 158 DGVKLLTPLISPA 170 (249)
Q Consensus 158 ~gv~~L~~iL~~~ 170 (249)
+|+....-+++.+
T Consensus 318 EGlqLm~Lmlr~K 330 (536)
T KOG2734|consen 318 EGLQLMNLMLREK 330 (536)
T ss_pred ccHHHHHHHHHHH
Confidence 9988766666543
No 81
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=35.29 E-value=17 Score=25.24 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=10.9
Q ss_pred HHHHHHhchhhhhh
Q 047448 183 LALAVACFDLSQFI 196 (249)
Q Consensus 183 ~~lava~~dig~~v 196 (249)
..+|..+||||...
T Consensus 30 l~~AalLHDiG~~~ 43 (80)
T TIGR00277 30 ARRGALLHDIGKPI 43 (80)
T ss_pred HHHHHHHHccCCcc
Confidence 44577899999875
No 82
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=35.23 E-value=37 Score=34.81 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=34.5
Q ss_pred chhhhhhH-hccchhHHHhhhchHHHHHhhccCCChhhh-HHHHHH
Q 047448 190 FDLSQFIQ-YHPAGRVIVTDLKAKERVMKLMNHENTEVT-KSALLC 233 (249)
Q Consensus 190 ~dig~~v~-~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~-~~al~~ 233 (249)
=|++|||| .||+-.-+-.-=.|=.-+-++|++=|.++- |++|++
T Consensus 98 ~DLaEfvR~aHPd~~fv~aAe~a~~~~~e~ve~LNTn~~LY~~Lk~ 143 (704)
T KOG2090|consen 98 ADLAEFVRQAHPDPEFVEAAEEACRSMFELVESLNTNVALYQKLKK 143 (704)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 49999999 578776665555588888999999999885 677764
No 83
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=35.23 E-value=2.3e+02 Score=29.74 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcChHHHHHHHhccCCCCcccccccChHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHh
Q 047448 45 YVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLIL 124 (249)
Q Consensus 45 yvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l 124 (249)
|.-+.++.|. .+|..++-..++-.|..+||.. .....++++++.|=.. + .. +...+.+++-+ .+-+
T Consensus 508 ~ttvilAk~~-g~~~v~~kil~~~~De~ep~r~-----m~a~~vsri~~~lg~~---~--~d--Erleerl~d~i-l~Af 573 (975)
T COG5181 508 LTTVILAKMG-GDPRVSRKILEYYSDEPEPYRK-----MNAGLVSRIFSRLGRL---G--FD--ERLEERLYDSI-LNAF 573 (975)
T ss_pred hhHHHHHHHc-CChHHHHHHHhhccCCcchhhh-----hhhHHHHHHHHhcccc---c--cc--HHHHHHHHHHH-HHHH
Confidence 4445667776 6677777777766677778743 3445556666665443 2 21 23336677777 7766
Q ss_pred cCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhH
Q 047448 125 KKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRV 204 (249)
Q Consensus 125 ~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~ 204 (249)
+.++ ++..+ ..-|..+.+-..++|--=.-..-++++...|+.++..+-+|-...|-.++...--.||+ .
T Consensus 574 qeq~-~t~~~--il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~--------~ 642 (975)
T COG5181 574 QEQD-TTVGL--ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET--------K 642 (975)
T ss_pred Hhcc-ccccE--EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH--------H
Confidence 5432 45555 66788888877777643333444777778887776555444332233334333333343 2
Q ss_pred HHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 205 IVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 205 ~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
.+.++| ...|+.+..++|||=---|.|.=.+.
T Consensus 643 ~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 643 ELAKLG--NILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred HHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 345555 46789999999999776666654443
No 84
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=33.94 E-value=57 Score=29.03 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=35.9
Q ss_pred HhccchhHHHhhhc-hHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 197 QYHPAGRVIVTDLK-AKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 197 ~~~p~g~~~~~~l~-~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
...|.-...++.+. .|.+|..++.++++.||-.|++-+|+++.-
T Consensus 29 ~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 29 CVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 34455566777766 899999999999999999999999998753
No 85
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=33.43 E-value=2.8e+02 Score=23.90 Aligned_cols=114 Identities=15% Similarity=0.197 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccC---CCCcccccccC---------------------
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSL---ASEDTYEPFLS--------------------- 80 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~---~~~~py~pfL~--------------------- 80 (249)
....+++..+-+-+..-+-...+..+..||+.- +.|...++ .+...|.||-.
T Consensus 39 ~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----k~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~ 114 (182)
T PF13251_consen 39 PATPSLLTCILKDPSPKVRAAAASALAALLEGS----KPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK 114 (182)
T ss_pred CCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc----HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444444455567777888899999664 44443333 33445666644
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEP 148 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~ 148 (249)
+..+..+.+++++.|++. -|+..=..+.++.+++-+ ...+.+.|++-+- .+.-|+..++...
T Consensus 115 ~~~~l~q~lK~la~Lv~~---tPY~rL~~~ll~~~v~~v-~~~l~~~d~~v~v--~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 115 SPPVLTQLLKCLAVLVQA---TPYHRLPPGLLTEVVTQV-RPLLRHRDPNVRV--AALSCLGALLSVQ 176 (182)
T ss_pred ccHHHHHHHHHHHHHHcc---CChhhcCHhHHHHHHHHH-HHHHhcCCCcHHH--HHHHHHHHHHcCC
Confidence 456667778899999887 443210035567777777 7777664433332 2566777776654
No 86
>PF13212 DUF4020: Domain of unknown function (DUF4020)
Probab=32.62 E-value=80 Score=27.43 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=36.6
Q ss_pred HHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcC
Q 047448 14 HRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTAN 57 (249)
Q Consensus 14 ~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~ 57 (249)
.|.++...+++.|+++|+-|+++....++-....-.|.|+|...
T Consensus 123 ~k~e~~k~~~e~va~L~~~Ll~~~~~~~~~e~ei~~Ike~L~~~ 166 (180)
T PF13212_consen 123 EKKEIMKRHPEMVAKLFFYLLQNMQEANTWESEIIQIKELLKQY 166 (180)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH
Confidence 35678888999999999999999988788877777888887654
No 87
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.35 E-value=97 Score=23.14 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHH
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKR 60 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~r 60 (249)
...++|..++.+.+..|+-.-+|..|..|++..-+.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~ 52 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN 52 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH
Confidence 567889999988888999999999999999766533
No 88
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=31.93 E-value=6.5e+02 Score=26.78 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=17.0
Q ss_pred HHHhhccCCChhhhHHHHHHHHHH
Q 047448 214 RVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 214 ~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
.+++.+.++|+.||..|..++.++
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhc
Confidence 456677777777777777777654
No 89
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=31.77 E-value=1.4e+02 Score=19.91 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=35.0
Q ss_pred hHhccchhHHHhhhchHHHHHhhccC-CChhhhHHHHHHHHHHh
Q 047448 196 IQYHPAGRVIVTDLKAKERVMKLMNH-ENTEVTKSALLCIQRLF 238 (249)
Q Consensus 196 v~~~p~g~~~~~~l~~k~~vm~l~~~-~d~~v~~~al~~~q~~~ 238 (249)
.+..|-.+.++.+-|.-..|..|-.| ++++|+..|-.-+.+|.
T Consensus 6 L~~l~it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 6 LEKLPITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HHCSS-SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 34567788999999988899999999 99999999988777775
No 90
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=31.72 E-value=3.6e+02 Score=23.70 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhH---------HHhhccc--ccchHhhhcc---------c
Q 047448 111 LEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRS---------SFVQADG--VKLLTPLISP---------A 170 (249)
Q Consensus 111 ~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~---------~fw~~~g--v~~L~~iL~~---------~ 170 (249)
....++.-| -.+-.+. + .-++.+++.|+.|...+.-+. .+|+.+. ++-|-.++.. .
T Consensus 17 ~~~~~L~~L-~~l~~~~--~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~ 92 (234)
T PF12530_consen 17 LQLPLLEAL-PSLACHK--N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFS 92 (234)
T ss_pred HHHHHHHHH-HHHhccC--c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccC
Confidence 345555555 4444331 1 444556667776666665544 4566433 3444333322 1
Q ss_pred cccchhhhHHHHHHHHHHhchhhhhhHhcc-chhHHHhhhchHHHHHhhc-cCCChhhhHHHHHHHHHHhch
Q 047448 171 STQQSIQLAGAMLALAVACFDLSQFIQYHP-AGRVIVTDLKAKERVMKLM-NHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 171 ~~~~~~Qllp~M~~lava~~dig~~v~~~p-~g~~~~~~l~~k~~vm~l~-~~~d~~v~~~al~~~q~~~~~ 240 (249)
.+...++ ..+++|.. +-++++..| .|-.++. .|+..+ .+.++.++--|+.++.-+.-+
T Consensus 93 ~~~~~~~-----~~i~~a~s-~~~ic~~~p~~g~~ll~------~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 93 SKDEFWE-----CLISIAAS-IRDICCSRPDHGVDLLP------LLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred CCcchHH-----HHHHHHHH-HHHHHHhChhhHHHHHH------HHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 1122222 33343332 334455555 5555554 466777 889999999999888777733
No 91
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=31.42 E-value=1.1e+02 Score=27.86 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=47.2
Q ss_pred ccchHhhhccc-cccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhch------HHHHHhhccCCChhhhHHHHH
Q 047448 160 VKLLTPLISPA-STQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKA------KERVMKLMNHENTEVTKSALL 232 (249)
Q Consensus 160 v~~L~~iL~~~-~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~------k~~vm~l~~~~d~~v~~~al~ 232 (249)
.+.++++|+.. ++. .++.-.+.=|++.++..|....++..+.. =...+++++++|+-++..|..
T Consensus 57 ~~~~l~lL~~~~~~~---------d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~ 127 (312)
T PF03224_consen 57 ASLFLNLLNKLSSND---------DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAF 127 (312)
T ss_dssp -----HHHHHH---H---------HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHH
T ss_pred HHHHHHHHHHccCcH---------HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHH
Confidence 66777777665 432 23333333378899999988888887653 156788999999999999999
Q ss_pred HHHHHhchh
Q 047448 233 CIQRLFLGA 241 (249)
Q Consensus 233 ~~q~~~~~~ 241 (249)
.+-.++...
T Consensus 128 iLt~Ll~~~ 136 (312)
T PF03224_consen 128 ILTSLLSQG 136 (312)
T ss_dssp HHHHHHTST
T ss_pred HHHHHHHcC
Confidence 999998775
No 92
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=31.20 E-value=1.2e+02 Score=26.94 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCCCCCChHHHHHHHHHHhccch-hhHHHhhcccccchHhhhccc--cccchh--hhH-HH-H-HHHHHHhch-hhhhhH
Q 047448 127 PSHPSRGVPVAINCLAALLKEPM-VRSSFVQADGVKLLTPLISPA--STQQSI--QLA-GA-M-LALAVACFD-LSQFIQ 197 (249)
Q Consensus 127 ~~~~~~~i~~~v~~Lq~LLr~~~-yR~~fw~~~gv~~L~~iL~~~--~~~~~~--Qll-p~-M-~~lava~~d-ig~~v~ 197 (249)
+.++.+|+.+|.+.+..||..++ .|-.. ..+-++.+.+.|... ..+..- -+. |. | .+++..-+= ||.+ -
T Consensus 74 ~~~~~~y~~vGc~L~~~Ll~~~eG~~~l~-~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~l-S 151 (226)
T PF14666_consen 74 TKNNQKYVRVGCQLLETLLSSPEGIKYLS-ESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVL-S 151 (226)
T ss_pred cccchHHHHHHHHHHHHHHcCcHHHHHHH-HccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHH-h
Confidence 34467999999999999999987 33333 444455555555322 000000 000 00 1 221111110 3333 4
Q ss_pred hccchhHHHhhhchHHHHHhhccCCCh
Q 047448 198 YHPAGRVIVTDLKAKERVMKLMNHENT 224 (249)
Q Consensus 198 ~~p~g~~~~~~l~~k~~vm~l~~~~d~ 224 (249)
.+|+|..++|+-|.=+.++.+...++.
T Consensus 152 ~~~~Gl~lLe~~~if~~l~~i~~~~~~ 178 (226)
T PF14666_consen 152 STPNGLKLLERWNIFTMLYHIFSLSSR 178 (226)
T ss_pred CChhHHHHHHHCCHHHHHHHHHccCch
Confidence 679999999999988888888888644
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=31.12 E-value=6.3e+02 Score=28.63 Aligned_cols=119 Identities=14% Similarity=0.204 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhccC-CC-CcccccccC---hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHH
Q 047448 41 ETVEYVLALIDEMLTANPKRARLFHDKSL-AS-EDTYEPFLS---NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGI 115 (249)
Q Consensus 41 dtvqyvL~LidDlL~e~p~rv~~F~~~~~-~~-~~py~pfL~---D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~ 115 (249)
+-|+--|+-+..+++-+|+.+..|..... -+ =..+...++ +.-++.+|..++..+-+. .+-..+ -+...-
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan---~~Cv~~--~a~~~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN---KECVTD--LATCNV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc---cHHHHH--HHhhhH
Confidence 46788888899999999999999986333 11 112223333 888999999999988776 322211 011223
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhc
Q 047448 116 FCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLIS 168 (249)
Q Consensus 116 l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~ 168 (249)
+.-| -.++.|. + ..-+.+..-|=+|-..++.-..-.+++|+..+.+++-
T Consensus 1815 L~~L-L~lLHS~--P-S~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1815 LTTL-LTLLHSQ--P-SMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred HHHH-HHHHhcC--h-HHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHh
Confidence 3333 3344431 1 1223366667777777765555555788888887774
No 94
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=30.77 E-value=38 Score=21.45 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHhccc
Q 047448 117 CYIQLLILKKPSHPSRGVPVAINCLAALLKEP 148 (249)
Q Consensus 117 ~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~ 148 (249)
+|- --+.+|+ +..+++.||.+|.++++..
T Consensus 6 nyA-w~Lv~S~--~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 6 NYA-WGLVKSN--NREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHH-HHHHHSS--SHHHHHHHHHHHHHHCCCS
T ss_pred HHH-HHHhcCC--CHHHHHHHHHHHHHHHhcc
Confidence 443 4477774 5568889999999999864
No 95
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=30.74 E-value=1.5e+02 Score=23.19 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=40.6
Q ss_pred HHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccC--CChhhhHHHHHHHHHHhchh
Q 047448 184 ALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 184 ~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~--~d~~v~~~al~~~q~~~~~~ 241 (249)
++|..|| ..|.-...+.++||-..|+..... .||-+|-+|+.|+--++-+|
T Consensus 9 lianl~~-------~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 9 LIANLCY-------KNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred HHHHHHh-------CCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 4455565 567777888889998888887654 48999999999999999877
No 96
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=29.48 E-value=1.1e+02 Score=25.24 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=34.1
Q ss_pred chhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 190 FDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 190 ~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
=||...|+.-|.|=+. |=..|.+-++|.||+|...||.-+-.+|-|
T Consensus 23 leicD~In~~~~~~k~-----a~rai~krl~~~n~~v~l~AL~LLe~~vkN 68 (139)
T cd03567 23 QAFCEQINKEPEGPQL-----AVRLLAHKIQSPQEKEALQALTVLEACMKN 68 (139)
T ss_pred HHHHHHHHcCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4678888888877322 333466778899999999999888777754
No 97
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=27.42 E-value=36 Score=33.34 Aligned_cols=25 Identities=24% Similarity=0.697 Sum_probs=21.7
Q ss_pred hchhhhhhHhccchhHHHhhhchHH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKE 213 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~ 213 (249)
.+||.+|++.||.|-.+++..+|-+
T Consensus 31 vYd~s~~~~~HPGG~~~I~~~~g~D 55 (430)
T KOG4232|consen 31 VYDISDWIKRHPGGSRVIEHYAGQD 55 (430)
T ss_pred cccHHHHHHhCCCchhHHHHhcCCc
Confidence 6999999999999988888877643
No 98
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.39 E-value=5.4e+02 Score=27.97 Aligned_cols=155 Identities=16% Similarity=0.192 Sum_probs=85.0
Q ss_pred hhhcCCCHHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCh-HHHHHHHhccCCCCcccccccC--h
Q 047448 5 RRYDNRSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANP-KRARLFHDKSLASEDTYEPFLS--N 81 (249)
Q Consensus 5 ~~~Dk~~~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p-~rv~~F~~~~~~~~~py~pfL~--D 81 (249)
+++++=+...=..++.+.+-..+-.|+.+++... -+..|....-+-..-+ +--.++-+ .-....|.|. |
T Consensus 277 qALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~a----QR~AlaiaaN~Cksi~sd~f~~v~e----alPlL~~lLs~~D 348 (1051)
T KOG0168|consen 277 QALEKISRRHPKAILQAGALSAVLSYLDFFSIHA----QRVALAIAANCCKSIRSDEFHFVME----ALPLLTPLLSYQD 348 (1051)
T ss_pred HHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCccchHHHH----HHHHHHHHHhhcc
Confidence 3444433333345666666666666666665432 2223333333332221 11111112 1112455555 7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcC-CC-CCCCChHHHHHHHHHHhcc-chhhHHHhhc
Q 047448 82 WFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKK-PS-HPSRGVPVAINCLAALLKE-PMVRSSFVQA 157 (249)
Q Consensus 82 ~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~-~~-~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~ 157 (249)
.=..+.+|.+++.+++...+.|++- +++- ..+++=. ..++.- |. -.+.-.-..|+.|..|-.. +--+....+.
T Consensus 349 ~k~ies~~ic~~ri~d~f~h~~~kL--dql~s~dLi~~~-~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~ 425 (1051)
T KOG0168|consen 349 KKPIESVCICLTRIADGFQHGPDKL--DQLCSHDLITNI-QQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKL 425 (1051)
T ss_pred chhHHHHHHHHHHHHHhcccChHHH--HHHhchhHHHHH-HHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHh
Confidence 7888899999999999987776553 2222 5555555 444421 11 1112222467888888877 6666777777
Q ss_pred ccccchHhhhccc
Q 047448 158 DGVKLLTPLISPA 170 (249)
Q Consensus 158 ~gv~~L~~iL~~~ 170 (249)
+...+|..|+...
T Consensus 426 ~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 426 DIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHHHHhcc
Confidence 7788888888554
No 99
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=26.99 E-value=28 Score=34.86 Aligned_cols=23 Identities=26% Similarity=0.668 Sum_probs=18.7
Q ss_pred hchhhhhhHhccchhHHHhhhchH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK 212 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k 212 (249)
.+|+.+|++.||.|. ++....||
T Consensus 128 VYDvT~fl~~HPGG~-~i~~~aG~ 150 (526)
T PLN03198 128 VYDVSDFAAEHPGGS-VISTYFGR 150 (526)
T ss_pred EEecHHHHHhCCCch-HHHHhcCC
Confidence 489999999999998 55555566
No 100
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=26.92 E-value=2e+02 Score=29.87 Aligned_cols=95 Identities=12% Similarity=0.208 Sum_probs=63.8
Q ss_pred HHHHHHHH-hccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHH
Q 047448 137 AINCLAAL-LKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERV 215 (249)
Q Consensus 137 ~v~~Lq~L-Lr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~v 215 (249)
|.-||-.+ ..+..-|..+-..++..+|++++...+.-+ | -.++++-|| +|=.|..=|.-.=.-||-+.+
T Consensus 397 a~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i--~----~~~lgai~N----lVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 397 ALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMI--M----GITLGAICN----LVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred HHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhH--H----HHHHHHHHH----HHhhcccHHHHHHHcCcHHHH
Confidence 33444333 335566666666788888888884333210 0 044555555 666666555555566899999
Q ss_pred HhhccCCChhhhHHHHHHHHHHhchh
Q 047448 216 MKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 216 m~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
-.+...+|+++|..++-+.-.+|-+.
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 99999999999999999888887665
No 101
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=26.53 E-value=3.2e+02 Score=25.17 Aligned_cols=98 Identities=15% Similarity=0.292 Sum_probs=60.2
Q ss_pred HHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhh---chHH
Q 047448 137 AINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDL---KAKE 213 (249)
Q Consensus 137 ~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l---~~k~ 213 (249)
++.+||.+...|+.|..|.+++-.-.|.+.|+..+..-.+.-+ ...+|. -||..|+ -+...+++-| ..-.
T Consensus 70 aLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~L-RLtsLG----VIgaLvK--~d~~evi~fLl~tEiip 142 (262)
T PF04078_consen 70 ALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYL-RLTSLG----VIGALVK--TDDPEVISFLLQTEIIP 142 (262)
T ss_dssp HHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHH-HHHHHH----HHHHHHT--T--HHHHHHHHCTTHHH
T ss_pred HHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchh-hHhHHH----HHHHHHc--CCcHHHHHHHHhhchHH
Confidence 7889999999999999999999888888888544311000000 003333 3666776 2222333332 2333
Q ss_pred HHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 214 RVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 214 ~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.-.+-|....+--|--|..-+||++.+.
T Consensus 143 lcLr~me~GselSKtvAtfIlqKIL~dd 170 (262)
T PF04078_consen 143 LCLRIMEFGSELSKTVATFILQKILLDD 170 (262)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHcch
Confidence 3345566778888999999999999887
No 102
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=25.42 E-value=44 Score=23.31 Aligned_cols=19 Identities=5% Similarity=0.226 Sum_probs=17.8
Q ss_pred hhhhhHhccchhHHHhhhc
Q 047448 192 LSQFIQYHPAGRVIVTDLK 210 (249)
Q Consensus 192 ig~~v~~~p~g~~~~~~l~ 210 (249)
||+.|..+|+.-.|.+++|
T Consensus 5 Vgeiv~~~p~~a~vf~~~g 23 (56)
T PF04405_consen 5 VGEIVAEDPRAARVFRKYG 23 (56)
T ss_pred HHHHHHHChHHHHHHHHcC
Confidence 7999999999999999986
No 103
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=25.23 E-value=3.9e+02 Score=22.15 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=48.7
Q ss_pred hhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHh---cChHHHHHHHhccCCCCc--ccccccC-h--HHHHHH
Q 047448 16 AQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLT---ANPKRARLFHDKSLASED--TYEPFLS-N--WFIQEK 87 (249)
Q Consensus 16 ~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~---e~p~rv~~F~~~~~~~~~--py~pfL~-D--~fi~~~ 87 (249)
-+++.+.+..+++.++++|++-...-+.++....+.+++. ..|+.++-+.. +.. .-++.++ . ..+...
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~t----p~l~~~i~~ll~l~~~~~~~~~ 133 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIAT----PNLPKFIQSLLQLLQDSSCPET 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhh----ccHHHHHHHHHHHHhccccHHH
Confidence 3677788888999999999996666778888878887763 22333332221 110 0111122 3 366777
Q ss_pred HHHHHHHHHhh
Q 047448 88 SCKILASIVRY 98 (249)
Q Consensus 88 a~~iLt~Li~~ 98 (249)
+...|+.|+..
T Consensus 134 ~l~~L~~ll~~ 144 (165)
T PF08167_consen 134 ALDALATLLPH 144 (165)
T ss_pred HHHHHHHHHHH
Confidence 77777777775
No 104
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.94 E-value=3e+02 Score=20.74 Aligned_cols=67 Identities=27% Similarity=0.322 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHH
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSF 154 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~f 154 (249)
+|-++..|+++|+.+...-... - ....+...+.+ .+.+..|..+..-.=.|+..|.+| ..+..|..+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~--~---~~L~~Ri~~tl-~k~l~d~~~~~~t~YGAi~gL~~l-G~~~vr~~i 85 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSS--Y---PTLQPRITRTL-LKALLDPKKPLGTHYGAIVGLSAL-GPEAVRALI 85 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccc--c---chHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 7899999999999988763211 1 12335666666 665554332222223378888887 555555443
No 105
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=24.88 E-value=62 Score=31.02 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccc
Q 047448 132 RGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPA 170 (249)
Q Consensus 132 ~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~ 170 (249)
.||....+.|..++.+......|.+.+|+..|.++++..
T Consensus 335 ~YI~~v~rFLea~fsN~~~C~~FVe~GGie~LLdLl~LP 373 (379)
T PF06025_consen 335 DYIFNVVRFLEAFFSNSDHCREFVEKGGIELLLDLLTLP 373 (379)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 567779999999999999999999999999999998643
No 106
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=24.44 E-value=75 Score=28.65 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=34.9
Q ss_pred hchhhhhhHhccchhHHHhhhc---hHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLK---AKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~---~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
-+|||=+.||.-.--++|..+| .++.|..-|+.+++|=-..|-..|+.-++||
T Consensus 127 PYDlGLLLRhLRHHSNLLAnIgdP~VreqVLsAMqEeeeEEe~DAa~gvr~~vln~ 182 (238)
T PF02084_consen 127 PYDLGLLLRHLRHHSNLLANIGDPEVREQVLSAMQEEEEEEEQDAANGVRDNVLNN 182 (238)
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhcc
Confidence 4899999999887778888777 4555555555555555555555555555443
No 107
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.12 E-value=5.5e+02 Score=28.66 Aligned_cols=138 Identities=19% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccch
Q 047448 85 QEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLL 163 (249)
Q Consensus 85 ~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L 163 (249)
++-|...|++++-. .|=-+ +=++ -++|.|. -++|+++..+.+-| .+----.-|.-.+.+-.-.++-.|-+..
T Consensus 487 RlRAL~LL~RFLDl---GpWAV--~LaLsVGIFPYV-LKLLQS~a~ELrpi-LVFIWAKILAvD~SCQ~dLvKe~g~~YF 559 (1387)
T KOG1517|consen 487 RLRALVLLARFLDL---GPWAV--DLALSVGIFPYV-LKLLQSSARELRPI-LVFIWAKILAVDPSCQADLVKENGYKYF 559 (1387)
T ss_pred HHHHHHHHHHHhcc---chhhh--hhhhccchHHHH-HHHhccchHhhhhh-HHHHHHHHHhcCchhHHHHHhccCceeE
Q ss_pred Hhhhcc-ccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccC-CChhhhHHHHHHHHHH
Q 047448 164 TPLISP-ASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH-ENTEVTKSALLCIQRL 237 (249)
Q Consensus 164 ~~iL~~-~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~-~d~~v~~~al~~~q~~ 237 (249)
+.+|.. ..... ..-++|++-|+.+|+-||.|..-+-..|.-..-.+.|++ ++|=.|-...+|+.++
T Consensus 560 ~~vL~~~~~~~~--------EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 560 LQVLDPSQAIPP--------EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred EEEecCcCCCCH--------HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
No 108
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.97 E-value=1.1e+02 Score=29.73 Aligned_cols=52 Identities=27% Similarity=0.459 Sum_probs=45.1
Q ss_pred hchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.-+|-+|++.+|+=+.++.+ .+...+-.+++|+|+.+|.-=-.|-.++|...
T Consensus 146 ~~eI~~~l~~~pe~~~LvGe-Ea~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~ 197 (411)
T KOG2757|consen 146 LEEIKQFLDTIPELRELVGE-EAARQLKDLTSHEDEDSKKVLKLCFSRLMKAE 197 (411)
T ss_pred HHHHHHHHHhChHHHHHhhH-HHHHHHHhhccchhhHHHHHHHHHHHHHhcCc
Confidence 35889999999999999886 57899999999999999988888888888654
No 109
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.82 E-value=1.4e+02 Score=24.51 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=31.9
Q ss_pred hhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 191 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 191 dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
||+..|+.-+.|=+- |=..|++-|.|.||+|.+.||.-+.-+|-|-
T Consensus 23 ~icD~I~~~~~~~k~-----a~ral~KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 23 DVCDKVKSDENGAKD-----CLKAIMKRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHHHHhcCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 566777766544221 2234555678999999999999988888654
No 110
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=23.78 E-value=75 Score=23.34 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.0
Q ss_pred HHHHHHhchhhhhhH
Q 047448 183 LALAVACFDLSQFIQ 197 (249)
Q Consensus 183 ~~lava~~dig~~v~ 197 (249)
..+|-.+||||.+..
T Consensus 28 l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 28 LRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHTTTTHHST
T ss_pred HHHHHHHHhcCCCCC
Confidence 344666899999873
No 111
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=23.46 E-value=2.3e+02 Score=29.41 Aligned_cols=87 Identities=13% Similarity=0.252 Sum_probs=59.5
Q ss_pred hccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHH------HhhhchHHHHHhh
Q 047448 145 LKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVI------VTDLKAKERVMKL 218 (249)
Q Consensus 145 Lr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~------~~~l~~k~~vm~l 218 (249)
+.=..||.-|-.++||+.|...+...-+ .+.+.+.. +.||.-.|-+. +.+.+ +..+-.+
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~----------n~r~~~~~----~Lr~l~f~~de~~k~~~~~ki~-a~~i~~l 512 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDF----------NSRANSLW----VLRHLMFNCDEEEKFQLLAKIP-ANLILDL 512 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCc----------hHHHHHHH----HHHHHHhcchHHHHHHHHHHhh-HHHHHHH
Confidence 3445688889999999999999876544 44555554 44554443333 33343 6778889
Q ss_pred ccCCChhhhHHHHHHHHHHhchh-hhhhh
Q 047448 219 MNHENTEVTKSALLCIQRLFLGA-KYASF 246 (249)
Q Consensus 219 ~~~~d~~v~~~al~~~q~~~~~~-~~~~~ 246 (249)
.++||+.|+.+++.-.--+.-+. +-++|
T Consensus 513 ~nd~d~~Vqeq~fqllRNl~c~~~~svdf 541 (678)
T KOG1293|consen 513 INDPDWAVQEQCFQLLRNLTCNSRKSVDF 541 (678)
T ss_pred HhCCCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 99999999999987666555554 54544
No 112
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.35 E-value=2e+02 Score=23.16 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=32.4
Q ss_pred hhhhhhHhccch-hHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 191 DLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 191 dig~~v~~~p~g-~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+|.+.|+.-|.| +..+. .|++-+.|.||+|.+.||.-+--+|-|-
T Consensus 28 ~icD~i~~~~~~~kea~~------~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 28 EICDLINSSPDGAKEAAR------ALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHHHHTSTTHHHHHHH------HHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCccHHHHHH------HHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 477788877655 33332 3556678899999999998887777653
No 113
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.94 E-value=1.2e+02 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhccchhhHHHhhc-ccccchHhhhcc
Q 047448 135 PVAINCLAALLKEPMVRSSFVQA-DGVKLLTPLISP 169 (249)
Q Consensus 135 ~~~v~~Lq~LLr~~~yR~~fw~~-~gv~~L~~iL~~ 169 (249)
..|++|+..++-.+.-+..+.++ +++..|+..|.+
T Consensus 134 ~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 134 HECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred HHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 34999999999999878877775 448888877754
No 114
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.10 E-value=1.4e+02 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.303 Sum_probs=43.7
Q ss_pred CCCHHHHhhhhhhcchhHHHHHH---HHHhhhchhHHHHHHHHHHHHHHhcC-hHHHHHHHh
Q 047448 9 NRSESHRAQLLDDDGPSYVRVFV---SILRDIYKEETVEYVLALIDEMLTAN-PKRARLFHD 66 (249)
Q Consensus 9 k~~~e~r~~~l~~~~~~y~~~fv---~LL~~~sk~dtvqyvL~LidDlL~e~-p~rv~~F~~ 66 (249)
+=++++|.++|..=+|+|.++-- .++=.+++--|..-|+.++.+.+.+. |+....|.+
T Consensus 91 ~~~~~~k~~~LasLaDsf~K~vaaskr~lPets~LavA~~vl~~l~~fv~e~~P~h~~af~e 152 (165)
T PF08822_consen 91 DMPPQEKVELLASLADSFSKMVAASKRVLPETSELAVAMEVLELLAAFVQERYPQHLAAFLE 152 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34789999999999999988733 44444466566667777788887766 899888887
No 115
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=20.64 E-value=5.1e+02 Score=23.39 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhc-----
Q 047448 136 VAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLK----- 210 (249)
Q Consensus 136 ~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~----- 210 (249)
.|++||.-.--.+. =+..+.++.+...+..... .+-.+|++=|...+-.|+ ..+++..+
T Consensus 46 ~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~~~~----------~v~~~al~~l~Dll~~~g--~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 46 LALKCLGLCCLLDK----ELAKEHLPLFLQALQKDDE----------EVKITALKALFDLLLTHG--IDIFDSESDNDES 109 (298)
T ss_pred HHHHHHHHHHHhCh----HHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHcC--chhccchhccCcc
Confidence 38888876544443 0123446667776643322 233445555555555552 33333322
Q ss_pred -----hHHHHHhhccCCChhhhHHHHHHHHHHhchhhh
Q 047448 211 -----AKERVMKLMNHENTEVTKSALLCIQRLFLGAKY 243 (249)
Q Consensus 211 -----~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~~~ 243 (249)
.-......+.+++++++--|-.+.-|++.+..+
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 334567788899999999999999999988743
No 116
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=20.42 E-value=2.1e+02 Score=21.90 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=32.3
Q ss_pred chhhhhhHhccch-hHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 190 FDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 190 ~dig~~v~~~p~g-~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+|...++.+|.| +.++.- +.+-|+|.++.|.+.||..+=-+|-|-
T Consensus 22 ~~i~d~~~~~~~~~~~~~~~------l~kRl~~~~~~~~lkaL~lLe~lvkN~ 68 (115)
T cd00197 22 MEICDLINETNVGPKEAVDA------IKKRINNKNPHVVLKALTLLEYCVKNC 68 (115)
T ss_pred HHHHHHHHCCCccHHHHHHH------HHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 4577777777655 555544 334457889999999999887777553
No 117
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=20.38 E-value=1.9e+02 Score=18.70 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=26.9
Q ss_pred HHHHHHHhhhch-hHHHHHHHHHHHHHHhcChHHHHHHHh
Q 047448 28 RVFVSILRDIYK-EETVEYVLALIDEMLTANPKRARLFHD 66 (249)
Q Consensus 28 ~~fv~LL~~~sk-~dtvqyvL~LidDlL~e~p~rv~~F~~ 66 (249)
..|+.+|+.-++ .-...-+...+.+++.++|+.+.-|..
T Consensus 5 ~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~ 44 (47)
T PF02671_consen 5 NEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNR 44 (47)
T ss_dssp HHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHh
Confidence 457777776653 233444777889999999998888765
No 118
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.25 E-value=1.3e+02 Score=24.05 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=31.5
Q ss_pred hhhhhHhccch-hHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 192 LSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 192 ig~~v~~~p~g-~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
|++.++.-|.| |..+. .++.-|.|+||+|++.||.-+--+|.|-
T Consensus 24 icd~I~~~~~~~k~a~r------aL~krl~~~n~~vql~AL~lLd~~vkNc 68 (133)
T cd03561 24 LCDLINLKPNGPKEAAR------AIRKKIKYGNPHVQLLALTLLELLVKNC 68 (133)
T ss_pred HHHHHhCCCCCHHHHHH------HHHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 56666666544 33333 4566678999999999999988888664
No 119
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=20.13 E-value=76 Score=21.89 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=16.7
Q ss_pred hhhhhHhccchhHHHhhhc
Q 047448 192 LSQFIQYHPAGRVIVTDLK 210 (249)
Q Consensus 192 ig~~v~~~p~g~~~~~~l~ 210 (249)
|++.++.||+-+.++-++|
T Consensus 7 I~el~~~yP~~~~il~~~g 25 (59)
T PF08984_consen 7 IYELLEQYPELIEILVSYG 25 (59)
T ss_dssp HHHHHHH-GGGHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 6899999999999999987
Done!