Query 047448
Match_columns 249
No_of_seqs 136 out of 206
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ho8_A Vacuolar ATP synthase s 100.0 6.6E-54 2.3E-58 410.9 11.3 231 1-241 43-478 (480)
2 4db6_A Armadillo repeat protei 98.8 4.6E-08 1.6E-12 80.7 11.2 198 20-238 7-208 (210)
3 4hxt_A De novo protein OR329; 98.8 1.8E-07 6.2E-12 78.2 14.8 207 11-241 33-243 (252)
4 4db8_A Armadillo-repeat protei 98.7 2.1E-07 7.2E-12 78.6 13.0 203 12-238 44-250 (252)
5 1jdh_A Beta-catenin; beta-cate 98.6 4.5E-07 1.5E-11 84.2 14.6 209 11-237 297-528 (529)
6 4hxt_A De novo protein OR329; 98.6 6.7E-07 2.3E-11 74.6 13.5 194 27-241 4-201 (252)
7 4db8_A Armadillo-repeat protei 98.5 1.1E-06 3.6E-11 74.3 12.1 197 24-241 11-211 (252)
8 4db6_A Armadillo repeat protei 98.4 9.8E-07 3.3E-11 72.6 9.5 143 81-241 25-169 (210)
9 2z6g_A B-catenin; FULL-length, 98.4 4E-06 1.4E-10 84.1 14.3 213 11-241 430-665 (780)
10 4b8j_A Importin subunit alpha- 98.3 3.5E-06 1.2E-10 79.2 11.4 194 26-240 287-497 (528)
11 2z6h_A Catenin beta-1, beta-ca 98.3 9.1E-06 3.1E-10 79.0 14.2 213 11-241 294-529 (644)
12 2jdq_A Importin alpha-1 subuni 98.2 4.5E-05 1.6E-09 69.0 16.2 197 25-241 107-307 (450)
13 1xqr_A HSPBP1 protein; armadil 98.2 3E-05 1E-09 69.8 14.5 197 25-241 28-240 (296)
14 4b8j_A Importin subunit alpha- 98.2 6.1E-05 2.1E-09 70.7 17.1 206 12-241 150-360 (528)
15 1wa5_B Importin alpha subunit; 98.1 1.2E-05 4.1E-10 75.8 10.8 195 26-241 300-512 (530)
16 3tpo_A Importin subunit alpha- 98.1 6.2E-05 2.1E-09 71.5 15.4 194 26-240 294-498 (529)
17 1wa5_B Importin alpha subunit; 98.1 0.00024 8.1E-09 66.9 18.2 196 26-241 174-372 (530)
18 3ul1_B Importin subunit alpha- 98.0 0.0002 6.9E-09 67.9 16.7 193 26-239 275-478 (510)
19 2jdq_A Importin alpha-1 subuni 97.9 0.00022 7.7E-09 64.4 13.8 196 25-241 192-392 (450)
20 3tpo_A Importin subunit alpha- 97.9 0.00017 5.7E-09 68.5 13.2 198 26-241 120-324 (529)
21 3ul1_B Importin subunit alpha- 97.8 0.00019 6.5E-09 68.1 12.5 198 26-241 101-305 (510)
22 3now_A UNC-45 protein, SD10334 97.8 0.00086 3E-08 68.2 17.6 220 12-243 279-528 (810)
23 1jdh_A Beta-catenin; beta-cate 97.7 0.0011 3.9E-08 61.1 16.6 192 25-237 59-254 (529)
24 3nmz_A APC variant protein; pr 97.7 0.00087 3E-08 63.8 16.1 199 25-243 243-456 (458)
25 3nmw_A APC variant protein; AR 97.7 0.0015 5E-08 60.0 16.8 198 25-241 127-336 (354)
26 2z6h_A Catenin beta-1, beta-ca 97.7 0.001 3.5E-08 64.5 15.5 194 25-239 56-253 (644)
27 1xm9_A Plakophilin 1; armadill 97.6 0.0011 3.7E-08 62.1 14.9 218 10-241 74-362 (457)
28 1xqr_A HSPBP1 protein; armadil 97.6 0.00012 4.1E-09 65.8 7.5 140 84-241 56-198 (296)
29 3nmw_A APC variant protein; AR 97.2 0.0083 2.8E-07 54.9 15.0 213 12-240 63-293 (354)
30 3now_A UNC-45 protein, SD10334 97.2 0.017 6E-07 58.7 18.1 208 12-244 526-743 (810)
31 2z6g_A B-catenin; FULL-length, 97.0 0.017 5.7E-07 57.8 16.2 136 25-171 192-331 (780)
32 1xm9_A Plakophilin 1; armadill 96.9 0.0037 1.3E-07 58.4 10.0 142 81-241 15-174 (457)
33 3nmz_A APC variant protein; pr 96.9 0.02 6.9E-07 54.4 14.8 211 11-240 178-409 (458)
34 3l6x_A Catenin delta-1; cateni 96.7 0.03 1E-06 55.0 14.6 155 81-247 322-484 (584)
35 3tt9_A Plakophilin-2; cell adh 96.6 0.0061 2.1E-07 53.0 8.0 96 136-241 29-126 (233)
36 3opb_A SWI5-dependent HO expre 94.9 0.39 1.3E-05 48.7 13.8 183 40-241 270-532 (778)
37 3grl_A General vesicular trans 94.8 0.22 7.4E-06 49.5 11.6 174 26-224 61-268 (651)
38 3grl_A General vesicular trans 94.3 0.59 2E-05 46.4 13.4 194 27-242 168-397 (651)
39 3l6x_A Catenin delta-1; cateni 94.1 0.058 2E-06 52.9 5.8 113 111-240 49-164 (584)
40 2vgl_B AP-2 complex subunit be 93.7 0.36 1.2E-05 46.3 10.5 53 183-241 443-495 (591)
41 1oyz_A Hypothetical protein YI 92.9 0.41 1.4E-05 40.5 8.6 28 211-238 193-220 (280)
42 3tt9_A Plakophilin-2; cell adh 92.9 0.3 1E-05 42.2 7.8 137 83-239 25-180 (233)
43 2vgl_B AP-2 complex subunit be 92.9 0.78 2.7E-05 43.9 11.4 147 81-241 134-313 (591)
44 2qk2_A LP04448P; mini spindles 91.8 1.8 6.3E-05 35.9 11.1 133 81-240 28-163 (242)
45 1w63_A Adapter-related protein 91.7 0.79 2.7E-05 44.3 9.9 31 211-241 314-344 (618)
46 1b3u_A Protein (protein phosph 91.5 2.3 8E-05 39.0 12.5 132 81-237 454-585 (588)
47 3ltj_A Alpharep-4; protein eng 91.4 4.5 0.00015 32.1 13.4 27 211-237 170-196 (201)
48 3opb_A SWI5-dependent HO expre 91.1 1.4 4.7E-05 44.7 11.2 213 12-242 365-638 (778)
49 1w63_A Adapter-related protein 91.1 0.46 1.6E-05 46.0 7.4 170 41-240 194-380 (618)
50 3ltm_A Alpha-REP4; protein eng 90.7 1.2 4.2E-05 35.8 8.7 31 211-241 175-205 (211)
51 2qk2_A LP04448P; mini spindles 90.5 3.9 0.00013 33.8 12.0 134 81-240 70-206 (242)
52 1b3u_A Protein (protein phosph 90.2 3 0.0001 38.2 11.9 132 81-238 100-231 (588)
53 4fdd_A Transportin-1; heat rep 89.7 8 0.00027 38.0 15.2 186 24-241 44-246 (852)
54 4fdd_A Transportin-1; heat rep 88.7 1.3 4.4E-05 43.8 8.6 135 83-240 336-472 (852)
55 1oyz_A Hypothetical protein YI 87.6 11 0.00039 31.3 14.2 26 211-238 224-249 (280)
56 1ibr_B P95, importin beta-1 su 86.2 6.6 0.00023 34.7 11.1 139 81-238 50-202 (462)
57 2qk1_A Protein STU2; STU2P, XM 81.8 4.6 0.00016 34.4 7.7 142 81-241 29-177 (249)
58 3dad_A FH1/FH2 domain-containi 81.1 30 0.001 31.5 13.3 186 18-229 111-326 (339)
59 3ltm_A Alpha-REP4; protein eng 79.9 21 0.00071 28.3 14.8 154 23-238 17-171 (211)
60 3ltj_A Alpharep-4; protein eng 78.5 20 0.0007 28.1 10.2 107 81-237 58-165 (201)
61 2vgl_A Adaptor protein complex 78.3 50 0.0017 31.8 15.8 94 27-126 128-239 (621)
62 2of3_A ZYG-9; multifunctional 78.0 18 0.00062 31.7 10.5 147 85-241 63-238 (266)
63 3b2a_A TON_1937, putative unch 78.0 36 0.0012 30.0 12.3 184 18-240 27-219 (265)
64 2ibj_A Cytochrome B5, CYTB5; F 77.7 0.99 3.4E-05 33.0 1.9 34 189-222 31-66 (88)
65 1qgr_A Protein (importin beta 76.5 14 0.0005 35.6 10.3 133 83-240 343-480 (876)
66 1u6g_C TIP120 protein, CAND1; 75.0 8.6 0.00029 39.5 8.6 136 81-240 61-205 (1230)
67 1cyo_A Cytochrome B5; electron 74.6 1.1 3.8E-05 33.3 1.4 34 189-222 29-64 (93)
68 3ner_A Cytochrome B5 type B; h 73.7 1.4 4.6E-05 32.8 1.7 34 189-222 34-69 (92)
69 3lf5_A Cytochrome B5 reductase 71.9 0.91 3.1E-05 33.4 0.4 34 189-222 30-65 (88)
70 1cxy_A Cytochrome B5; helix, b 71.9 0.8 2.7E-05 33.7 0.0 29 189-217 32-62 (90)
71 1hko_A Cytochrome B5; electron 71.5 1.1 3.9E-05 34.0 0.8 34 189-222 33-68 (104)
72 2vgl_A Adaptor protein complex 71.4 37 0.0012 32.7 11.7 56 183-241 495-552 (621)
73 1u6g_C TIP120 protein, CAND1; 70.5 19 0.00066 36.9 10.0 137 81-240 147-285 (1230)
74 1x3x_A Cytochrome B5; hemoprot 69.6 1.5 5E-05 31.7 1.0 24 189-213 28-51 (82)
75 2qk1_A Protein STU2; STU2P, XM 69.4 36 0.0012 28.7 10.1 138 81-238 74-219 (249)
76 2i9c_A Hypothetical protein RP 68.5 2.7 9.3E-05 33.1 2.4 49 183-231 25-78 (123)
77 4ffb_C Protein STU2; tubulin f 68.3 53 0.0018 27.6 11.5 139 81-239 68-212 (278)
78 2keo_A Probable E3 ubiquitin-p 65.4 1.4 4.7E-05 34.1 0.1 35 189-223 48-84 (112)
79 1mj4_A Sulfite oxidase; cytoch 60.6 2.3 7.8E-05 30.7 0.6 24 189-213 30-54 (82)
80 2bpt_A Importin beta-1 subunit 59.8 62 0.0021 31.0 10.8 134 82-240 345-483 (861)
81 3dad_A FH1/FH2 domain-containi 55.2 34 0.0012 31.2 7.5 100 130-240 131-232 (339)
82 1ibr_B P95, importin beta-1 su 52.6 1.2E+02 0.004 26.4 14.4 49 188-240 348-396 (462)
83 3tjz_B Coatomer subunit gamma; 51.4 24 0.00083 32.1 6.0 54 81-146 152-205 (355)
84 1te4_A Conserved protein MTH18 50.8 9.2 0.00031 28.5 2.6 25 213-237 45-69 (131)
85 2h7b_A Core-binding factor, ML 50.1 34 0.0012 26.1 5.6 59 22-80 5-69 (105)
86 1te4_A Conserved protein MTH18 47.9 10 0.00036 28.2 2.5 26 212-237 75-100 (131)
87 1qgr_A Protein (importin beta 47.2 1.8E+02 0.0061 27.8 11.8 92 135-239 107-203 (876)
88 2bpt_A Importin beta-1 subunit 44.5 2.1E+02 0.0073 27.2 15.8 136 84-240 572-712 (861)
89 4ady_A RPN2, 26S proteasome re 41.1 3.1E+02 0.011 28.4 12.8 28 214-241 651-678 (963)
90 1kbi_A Cytochrome B2, L-LCR; f 41.1 13 0.00044 35.6 2.5 34 189-223 33-68 (511)
91 4gof_A Small glutamine-rich te 38.6 4.9 0.00017 27.0 -0.6 35 113-148 7-44 (52)
92 4gmo_A Putative uncharacterize 37.3 40 0.0014 32.7 5.5 72 158-240 34-106 (684)
93 2k5e_A Uncharacterized protein 32.9 18 0.0006 25.4 1.5 19 192-210 11-29 (73)
94 2fi0_A Conserved domain protei 32.7 19 0.00064 25.6 1.7 19 192-210 15-33 (81)
95 3ebb_A Phospholipase A2-activa 30.3 1.9E+02 0.0065 25.4 8.3 95 135-239 166-263 (304)
96 2fv2_A RCD1 required for cell 30.3 1.9E+02 0.0066 25.4 8.1 101 137-242 76-177 (268)
97 4asv_A Small glutamine-rich te 30.0 12 0.00042 27.9 0.2 55 113-168 24-84 (92)
98 1sox_A Sulfite oxidase; oxidor 27.7 15 0.0005 34.9 0.4 25 189-213 30-54 (466)
99 2lxb_A Small glutamine-rich te 27.4 14 0.00047 26.5 0.2 37 112-149 11-50 (74)
100 2fv2_A RCD1 required for cell 27.2 1.1E+02 0.0039 26.9 6.0 134 11-156 86-234 (268)
101 1x5b_A Signal transducing adap 26.7 94 0.0032 24.8 5.1 45 191-240 38-82 (163)
102 1juq_A ADP-ribosylation factor 25.9 91 0.0031 25.1 4.9 45 191-240 36-80 (171)
103 2our_A CAMP and CAMP-inhibited 25.3 42 0.0014 30.1 3.0 38 183-223 111-162 (331)
104 2k53_A A3DK08 protein; NESG, C 23.4 38 0.0013 23.9 1.8 19 192-210 9-27 (76)
105 3itu_A CGMP-dependent 3',5'-cy 23.0 44 0.0015 30.3 2.7 40 183-223 115-168 (345)
106 3gae_A Protein DOA1; UFD3, CDC 22.8 1.6E+02 0.0054 25.1 6.1 96 136-239 109-217 (253)
107 3ecm_A High affinity CAMP-spec 22.2 54 0.0019 29.4 3.1 42 183-225 108-163 (338)
108 1so2_A CGMP-inhibited 3',5'-cy 21.4 48 0.0016 30.9 2.6 40 183-223 161-214 (420)
109 3bjc_A CGMP-specific 3',5'-cyc 20.1 49 0.0017 33.3 2.6 38 183-223 649-700 (878)
No 1
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=100.00 E-value=6.6e-54 Score=410.91 Aligned_cols=231 Identities=17% Similarity=0.209 Sum_probs=192.7
Q ss_pred CchhhhhcCCC-HHHHhhh----------hhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCh---HHHHHHHh
Q 047448 1 LQLLRRYDNRS-ESHRAQL----------LDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANP---KRARLFHD 66 (249)
Q Consensus 1 l~~I~~~Dk~~-~e~r~~~----------l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p---~rv~~F~~ 66 (249)
+++||+||+++ ++.+.+. +..+ +.|+++|+++|++++|+||+||||+||+|||+++| +++++|++
T Consensus 43 ~~~ik~~dk~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~ 121 (480)
T 1ho8_A 43 ASTAKALESILVKKNIGDGLSSSNNAHSGFKVN-GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQE 121 (480)
T ss_dssp HHHHHHHHHHHHCC-----------------CS-STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHhhhhccchhhhhhhhcC-chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhh
Confidence 36899999965 4545544 5666 68999999999999999999999999999999999 99999999
Q ss_pred ccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHH--HHHHHHhcCC-CCCCCChHHHHHHH
Q 047448 67 KSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFC--YIQLLILKKP-SHPSRGVPVAINCL 141 (249)
Q Consensus 67 ~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~--wL~~~~l~~~-~~~~~~i~~~v~~L 141 (249)
.++....||.||+. |+|+++.|+.+++.+++++ +.. ++..+++++ |+ .++++++ +++.+|+ |++||
T Consensus 122 ~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~---~~~---~~~l~~l~~~~~~-~~~L~~~~~~~~~~i--~v~~L 192 (480)
T 1ho8_A 122 DPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG---LHN---VKLVEKLLKNNNL-INILQNIEQMDTCYV--CIRLL 192 (480)
T ss_dssp CTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT---TCC---HHHHHHHHHCHHH-HHHHHCTTCHHHHHH--HHHHH
T ss_pred CcccchHHHHHHhcccchHHHHHHHHHHHHHhccC---Ccc---HhHHHHHhhhHHH-HHHhccccCCchHHH--HHHHH
Confidence 87755579999998 8999999999999998874 322 466799999 99 9999874 3466776 99999
Q ss_pred HHHhccchhhHHHhhccc--ccchHhhhccc-------------cccchhhhH-------------HH------------
Q 047448 142 AALLKEPMVRSSFVQADG--VKLLTPLISPA-------------STQQSIQLA-------------GA------------ 181 (249)
Q Consensus 142 q~LLr~~~yR~~fw~~~g--v~~L~~iL~~~-------------~~~~~~Qll-------------p~------------ 181 (249)
|+|||+++||..||+.+| +++++.+++++ ++++|+||+ |.
T Consensus 193 ~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~ 272 (480)
T 1ho8_A 193 QELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSD 272 (480)
T ss_dssp HHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHH
T ss_pred HHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHH
Confidence 999999999999999877 88888887654 344455554 00
Q ss_pred -----------------------------------------H--------------------------------------
Q 047448 182 -----------------------------------------M-------------------------------------- 182 (249)
Q Consensus 182 -----------------------------------------M-------------------------------------- 182 (249)
|
T Consensus 273 ~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~ 352 (480)
T 1ho8_A 273 FLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEY 352 (480)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -------------------------------------------------------------------HHHHHHhchhhhh
Q 047448 183 -------------------------------------------------------------------LALAVACFDLSQF 195 (249)
Q Consensus 183 -------------------------------------------------------------------~~lava~~dig~~ 195 (249)
.++||||||||||
T Consensus 353 ~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digef 432 (480)
T 1ho8_A 353 QELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHV 432 (480)
T ss_dssp HTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHH
Confidence 2599999999999
Q ss_pred hHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 196 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 196 v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
|||||+||.+++++|||++||+||+|+|++||||||+|+||+|++|
T Consensus 433 vr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 433 VELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999987
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.78 E-value=4.6e-08 Score=80.68 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=140.8
Q ss_pred hhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHh
Q 047448 20 DDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVR 97 (249)
Q Consensus 20 ~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~ 97 (249)
...++.+...++.+|++ +..++....+..+..+...+++..+.+.+. ..-.+.-.+|. |.-++..|+..|+.|..
T Consensus 7 ~~~~~~~~~~l~~LL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIAS 83 (210)
T ss_dssp ------CHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cccccchhHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 34456677788899976 456777777778888887888777777652 01112333334 78899999999999986
Q ss_pred hhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhhccccccch
Q 047448 98 YLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPASTQQS 175 (249)
Q Consensus 98 ~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~~~~~ 175 (249)
. .+... .... .+.+..| .+.++++ +..-...++.+|..+.. .++.+..+.+.++++.|+.+++....
T Consensus 84 ~---~~~~~--~~i~~~g~i~~L-~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--- 152 (210)
T 4db6_A 84 G---GNEQI--QAVIDAGALPAL-VQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--- 152 (210)
T ss_dssp S---CHHHH--HHHHHTTCHHHH-HHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH---
T ss_pred C---CcHHH--HHHHHCCCHHHH-HHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH---
Confidence 5 32221 1122 4455566 6666654 22223348889999985 56667788888999999999976433
Q ss_pred hhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 176 IQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 176 ~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
.+..-||.=|+.++...|..+..+.+.|+-..+.+++.++|++||.+|+.|+..+-
T Consensus 153 -------~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 153 -------QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -------HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 44566888899999988999999999999999999999999999999999998764
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.77 E-value=1.8e-07 Score=78.17 Aligned_cols=207 Identities=18% Similarity=0.201 Sum_probs=150.1
Q ss_pred CHHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHH
Q 047448 11 SESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKS 88 (249)
Q Consensus 11 ~~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a 88 (249)
+++.+..+++. ..+..++++|++- ..++....+..+..+..++++..+.+.+. ..-.+.-.+++ |.-++..|
T Consensus 33 ~~~~~~~~~~~---g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~ll~~~~~~v~~~a 106 (252)
T 4hxt_A 33 PASAIKAIVDA---GGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDA--GGVEVLVKLLTSTDSEVQKEA 106 (252)
T ss_dssp CHHHHHHHHHT---THHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHHTTCSSHHHHHHH
T ss_pred CcHHHHHHHHC---CCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHH
Confidence 34455555544 3577788888763 46777778888888887777766666642 11122333444 78999999
Q ss_pred HHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc-chhhHHHhhcccccchHhh
Q 047448 89 CKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKE-PMVRSSFVQADGVKLLTPL 166 (249)
Q Consensus 89 ~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~~gv~~L~~i 166 (249)
+..|..|... .+... .... .+.+..| ...++++ +..-...++.+|..|... +..+..+.+.++++.|+++
T Consensus 107 ~~~L~~l~~~---~~~~~--~~~~~~~~i~~L-~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 178 (252)
T 4hxt_A 107 ARALANIASG---PDEAI--KAIVDAGGVEVL-VKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178 (252)
T ss_dssp HHHHHHHTTS---CHHHH--HHHHHTTHHHHH-HHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHH--HHHHHCCCHHHH-HHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHH
Confidence 9999999864 32221 1122 4566666 6666654 233445589999999884 5555788888889999999
Q ss_pred hccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 167 ISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 167 L~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+..... .+..-||.=|+.++...|..+..+.+.|+-..+++++.++|++||.+|+.++..+..+.
T Consensus 179 l~~~~~----------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 179 LTSTDS----------EVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp TTCSCH----------HHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HCCCCH----------HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 975433 44466778899999989999999999999999999999999999999999999998765
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.70 E-value=2.1e-07 Score=78.62 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=146.9
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHH
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSC 89 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~ 89 (249)
.+.+..+++. ..+..++++|++-+ .++....+..+..+...+++..+.+.+. ..-.+.-.+|+ |..++..|+
T Consensus 44 ~~~~~~~~~~---g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~ 117 (252)
T 4db8_A 44 NEQIQAVIDA---GALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDA--GALPALVQLLSSPNEQILQEAL 117 (252)
T ss_dssp HHHHHHHHHT---THHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHH
T ss_pred CchHHHHHHc---CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHH
Confidence 3444444443 34677888887644 6777788888888887777766666652 11122333444 789999999
Q ss_pred HHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhh
Q 047448 90 KILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLI 167 (249)
Q Consensus 90 ~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL 167 (249)
..|..|... .+... .... .+.+..| ...++++ +..-...++.+|..+.. .++.+..+.+.++++.|+.++
T Consensus 118 ~~L~~l~~~---~~~~~--~~~~~~~~i~~L-~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 189 (252)
T 4db8_A 118 WALSNIASG---GNEQI--QAVIDAGALPAL-VQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189 (252)
T ss_dssp HHHHHHTTS---CHHHH--HHHHHTTHHHHH-HHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHhhcC---CchHH--HHHHHCCCHHHH-HHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 999999765 22110 1122 5566777 7777654 22334458999999998 457777888899999999999
Q ss_pred ccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 168 SPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 168 ~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
+.... .+..-||.=|+.++...|+++..+.+.|+-..+++++.++|++||.+|..|+..+-
T Consensus 190 ~~~~~----------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 190 SSPNE----------QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp GCSSH----------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred CCCCH----------HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 76532 44566888899999999999999999999999999999999999999999987664
No 5
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.64 E-value=4.5e-07 Score=84.23 Aligned_cols=209 Identities=10% Similarity=0.091 Sum_probs=137.7
Q ss_pred CHHHHhhhhhhcchhHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHhcChHH---HHHHHhccCCCCcccccccC---hHH
Q 047448 11 SESHRAQLLDDDGPSYVRVFVSILRDIY-KEETVEYVLALIDEMLTANPKR---ARLFHDKSLASEDTYEPFLS---NWF 83 (249)
Q Consensus 11 ~~e~r~~~l~~~~~~y~~~fv~LL~~~s-k~dtvqyvL~LidDlL~e~p~r---v~~F~~~~~~~~~py~pfL~---D~f 83 (249)
+++.+..+++.. .+..++.+|.+-+ +.++....+..+.-+...+|+. ...+.+. ..-.+...++. ++.
T Consensus 297 ~~~~~~~~~~~~---~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~--~~i~~L~~lL~~~~~~~ 371 (529)
T 1jdh_A 297 NYKNKMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH--YGLPVVVKLLHPPSHWP 371 (529)
T ss_dssp CHHHHHHHHHTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT--TCHHHHHHTTSTTCCHH
T ss_pred CHHHHHHHHHcC---ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc--CChhHHHHHhccccchH
Confidence 345555555433 4566778887643 3677777777788776655532 2223321 11122333444 368
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHH---hcC-------------CCCCCCChHHHHHHHHHHhcc
Q 047448 84 IQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLI---LKK-------------PSHPSRGVPVAINCLAALLKE 147 (249)
Q Consensus 84 i~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~---l~~-------------~~~~~~~i~~~v~~Lq~LLr~ 147 (249)
++..++..|+.+...........+ .+..+.+++.| .+- .+. .....+-+..++.+|..|.+.
T Consensus 372 v~~~a~~~l~nl~~~~~~~~~~~~-~~~i~~L~~ll-~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~ 449 (529)
T 1jdh_A 372 LIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 449 (529)
T ss_dssp HHHHHHHHHHHHTTSGGGHHHHHH-TTHHHHHHHHH-HHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcChhhhHHHHH-cCCHHHHHHHH-HHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC
Confidence 889999999998864111100100 13335555555 321 111 000011123578899999999
Q ss_pred chhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhh
Q 047448 148 PMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVT 227 (249)
Q Consensus 148 ~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~ 227 (249)
++.|..+.+.++++.|+.++..... .+...|+..++++.. .|.++..+.+.||.+.+++|+.|+|++|+
T Consensus 450 ~~~~~~l~~~~~v~~l~~ll~~~~~----------~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~ 518 (529)
T 1jdh_A 450 VHNRIVIRGLNTIPLFVQLLYSPIE----------NIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVA 518 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCH----------HHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHH
T ss_pred chHHHHHhccCCccHHHHHHcCCch----------HHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHH
Confidence 9999999999999999999976543 455778888888874 58899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047448 228 KSALLCIQRL 237 (249)
Q Consensus 228 ~~al~~~q~~ 237 (249)
+.|..+++++
T Consensus 519 ~~a~~aL~~l 528 (529)
T 1jdh_A 519 TYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999875
No 6
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.61 E-value=6.7e-07 Score=74.64 Aligned_cols=194 Identities=19% Similarity=0.195 Sum_probs=143.8
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCCc
Q 047448 27 VRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDPF 104 (249)
Q Consensus 27 ~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~ 104 (249)
+..++.+|++-+ .++....+..+..+...+++..+.+.+. ..-.+.-.++. |.-++..|+..|..|... .++
T Consensus 4 i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~ 77 (252)
T 4hxt_A 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDA--GGVEVLVKLLTSTDSEVQKEAARALANIASG---PDE 77 (252)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---ChH
Confidence 456778887644 6777777888888888888666666551 11123333444 789999999999999875 332
Q ss_pred hhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-ccchhhHHHhhcccccchHhhhccccccchhhhHHHH
Q 047448 105 AQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALL-KEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAM 182 (249)
Q Consensus 105 ~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LL-r~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M 182 (249)
.. +... .+.+..| ...++++ +..-...|+.+|..+. ..++.+..+.+.++++.|+++++....
T Consensus 78 ~~--~~~~~~~~i~~l-~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~---------- 142 (252)
T 4hxt_A 78 AI--KAIVDAGGVEVL-VKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS---------- 142 (252)
T ss_dssp HH--HHHHHTTHHHHH-HHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH----------
T ss_pred HH--HHHHHCCCHHHH-HHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH----------
Confidence 21 1222 4566667 6666654 3333455899999999 688999999999999999999976543
Q ss_pred HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 183 LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=|+.+..+.|..+..+-+-|+-..+.+++.++|++||.+|+.++..+..++
T Consensus 143 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 143 EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 34456778888998888888777777899999999999999999999999999988644
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.51 E-value=1.1e-06 Score=74.25 Aligned_cols=197 Identities=16% Similarity=0.144 Sum_probs=139.6
Q ss_pred hhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcC
Q 047448 24 PSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKH 101 (249)
Q Consensus 24 ~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~ 101 (249)
...-..|+..|++-+ .++.......+..++..+++..+.+.+. ..-.+.-.+|. +.-++..|+.+|..|...
T Consensus 11 ~~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--- 84 (252)
T 4db8_A 11 GSELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDA--GALPALVQLLSSPNEQILQEALWALSNIASG--- 84 (252)
T ss_dssp TCSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred cchHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHc--CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---
Confidence 344566777777643 3444455555555555455555555541 11123334444 678999999999999875
Q ss_pred CCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhh-HHHhhcccccchHhhhccccccchhhhH
Q 047448 102 DPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVR-SSFVQADGVKLLTPLISPASTQQSIQLA 179 (249)
Q Consensus 102 ~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR-~~fw~~~gv~~L~~iL~~~~~~~~~Qll 179 (249)
.+... .... .+.+..| ...++++ +..-...|+.+|..+...++.| ..+.+.++++.|+++|+....
T Consensus 85 ~~~~~--~~i~~~g~i~~L-~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~------- 152 (252)
T 4db8_A 85 GNEQI--QAVIDAGALPAL-VQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE------- 152 (252)
T ss_dssp CHHHH--HHHHHTTHHHHH-HHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH-------
T ss_pred CHHHH--HHHHHcCCHHHH-HHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCH-------
Confidence 32221 1222 5567777 7777764 2333445899999999999999 889999999999999976533
Q ss_pred HHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 180 GAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 180 p~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=|+.+....|+.+..+-+-|+-..+.+++.++|++|+.+|+.++..+..++
T Consensus 153 ---~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 153 ---QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp ---HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 34455777788898888888888888899999999999999999999999999987544
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.43 E-value=9.8e-07 Score=72.59 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh-ccchhhHHHhhcc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALL-KEPMVRSSFVQAD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LL-r~~~yR~~fw~~~ 158 (249)
|.-++..|+..|+.|... .+... .... .+.+..| .+.++++ +..-...++.+|..+. ..++.|..+.+.+
T Consensus 25 ~~~v~~~a~~~L~~l~~~---~~~~~--~~i~~~g~i~~L-~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (210)
T 4db6_A 25 DQQELQSALRKLSQIASG---GNEQI--QAVIDAGALPAL-VQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAG 96 (210)
T ss_dssp CHHHHHHHHHHHHHHHTS---CHHHH--HHHHHTTHHHHH-HHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcC---CHHHH--HHHHHcCCHHHH-HHHHcCC--CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence 899999999999999765 32221 1222 4566666 6666654 2233445888999998 4778999999999
Q ss_pred cccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 159 GVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 159 gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
+++.|+.+|+.... .+..-||.=|+.+..+.|+.+..+-+-|+=..++++|.++|++|+.+|+.|+..+.
T Consensus 97 ~i~~L~~lL~~~~~----------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 97 ALPALVQLLSSPNE----------QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp CHHHHHHHTTCSCH----------HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCcH----------HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999976543 44466788889999888888877778899999999999999999999999999988
Q ss_pred chh
Q 047448 239 LGA 241 (249)
Q Consensus 239 ~~~ 241 (249)
.++
T Consensus 167 ~~~ 169 (210)
T 4db6_A 167 SGG 169 (210)
T ss_dssp TSC
T ss_pred cCC
Confidence 763
No 9
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.37 E-value=4e-06 Score=84.11 Aligned_cols=213 Identities=10% Similarity=0.077 Sum_probs=137.5
Q ss_pred CHHHHhhhhhhcchhHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHhcChHH--H-HHHHhccCCCCcccccccC---hHH
Q 047448 11 SESHRAQLLDDDGPSYVRVFVSILRDIY-KEETVEYVLALIDEMLTANPKR--A-RLFHDKSLASEDTYEPFLS---NWF 83 (249)
Q Consensus 11 ~~e~r~~~l~~~~~~y~~~fv~LL~~~s-k~dtvqyvL~LidDlL~e~p~r--v-~~F~~~~~~~~~py~pfL~---D~f 83 (249)
+++.+..+++.. .+..++.+|.+.+ .+++....+..+..+-..+++. + ..+.+. ..-.+....|. ++-
T Consensus 430 ~~~~~~~i~~~g---~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~--~~l~~L~~lL~~~~~~~ 504 (780)
T 2z6g_A 430 NYKNKMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLH--YGLPVVVKLLHPPSHWP 504 (780)
T ss_dssp CHHHHHHHHTTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHT--TCHHHHHHTTSTTCCHH
T ss_pred CHHHHHHHHHCC---CHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHc--CCHHHHHHHhcCCChHH
Confidence 344554444332 4666778887643 3466666666777765444432 1 122221 01112222333 358
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHh---c-------------CCCCCCCChHHHHHHHHHHhcc
Q 047448 84 IQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLIL---K-------------KPSHPSRGVPVAINCLAALLKE 147 (249)
Q Consensus 84 i~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l---~-------------~~~~~~~~i~~~v~~Lq~LLr~ 147 (249)
++..|+..|+.|...........+ .+.++.++..| .+-- + ......+-...++.+|..|.+.
T Consensus 505 v~~~A~~aL~nLa~~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 505 LIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHH-TTHHHHHHHHH-HHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH-CCCHHHHHHHH-HhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 999999999999864111100100 12334444444 3210 0 0000011234588999999999
Q ss_pred chhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhh
Q 047448 148 PMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVT 227 (249)
Q Consensus 148 ~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~ 227 (249)
+..|..+.+.+++++|+.+|..... .+...|+.-|+.++ ..|+++..+.+.|+...+++|+.|+|++||
T Consensus 583 ~~~~~~l~~~~~i~~Lv~lL~~~~~----------~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr 651 (780)
T 2z6g_A 583 IHNRIVIRGLNTIPLFVQLLYSPIE----------NIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVA 651 (780)
T ss_dssp HHHHHHHHHTCCHHHHHHGGGCSCH----------HHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred hhhHHHHHHCCcHHHHHHHHcCCCH----------HHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999999999999999999976543 45567777788776 568899999999999999999999999999
Q ss_pred HHHHHHHHHHhchh
Q 047448 228 KSALLCIQRLFLGA 241 (249)
Q Consensus 228 ~~al~~~q~~~~~~ 241 (249)
+.|+.|+.++..+.
T Consensus 652 ~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 652 TYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998765
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.31 E-value=3.5e-06 Score=79.19 Aligned_cols=194 Identities=13% Similarity=0.154 Sum_probs=138.1
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC---hHHHHHHHHHHHHHHHhhhcCC
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS---NWFIQEKSCKILASIVRYLKHD 102 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~---D~fi~~~a~~iLt~Li~~~~~~ 102 (249)
.+..++++|.+- ..++....+..+..+....++..+.+.+. ..-.+...+|. +.-++..|+..|+.|... .
T Consensus 287 ~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~---~ 360 (528)
T 4b8j_A 287 VCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDH--QALPCLLSLLTQNLKKSIKKEACWTISNITAG---N 360 (528)
T ss_dssp CHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTT--THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS---C
T ss_pred HHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHh--hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC---C
Confidence 466777888764 46788888888888888777666655541 00111222232 578999999999999874 3
Q ss_pred Cchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc--chhhHHHhhcccccchHhhhccccccchhhhH
Q 047448 103 PFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKE--PMVRSSFVQADGVKLLTPLISPASTQQSIQLA 179 (249)
Q Consensus 103 ~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~--~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qll 179 (249)
+... .... .+++..| ...+.++ +..-...++.+|..+... ++.+..+++.++++.|+.+|.....
T Consensus 361 ~~~~--~~~~~~~~i~~L-~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~------- 428 (528)
T 4b8j_A 361 KDQI--QAVINAGIIGPL-VNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI------- 428 (528)
T ss_dssp HHHH--HHHHHTTCHHHH-HHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH-------
T ss_pred HHHH--HHHHHCCCHHHH-HHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCH-------
Confidence 2221 1111 3455555 5555543 223334488899988886 7889999999999999999976433
Q ss_pred HHHHHHHHHhchhhhhhHhccc-----------hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 180 GAMLALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 180 p~M~~lava~~dig~~v~~~p~-----------g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
.+..+|+.=|+.+++..+. ....+++.||.+++..|++|+|++|+..|...++++...
T Consensus 429 ---~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 429 ---RIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 4456677778888877655 688999999999999999999999999999999998754
No 11
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.29 E-value=9.1e-06 Score=78.96 Aligned_cols=213 Identities=10% Similarity=0.081 Sum_probs=140.0
Q ss_pred CHHHHhhhhhhcchhHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHhcChH--HHHH-HHhccCCCCcccccccC---hHH
Q 047448 11 SESHRAQLLDDDGPSYVRVFVSILRDIY-KEETVEYVLALIDEMLTANPK--RARL-FHDKSLASEDTYEPFLS---NWF 83 (249)
Q Consensus 11 ~~e~r~~~l~~~~~~y~~~fv~LL~~~s-k~dtvqyvL~LidDlL~e~p~--rv~~-F~~~~~~~~~py~pfL~---D~f 83 (249)
+++.|..+++.. .+..++.+|.+.+ ++++....+..+.-+...+++ ..+. +.+. ..-.+...+|. ++-
T Consensus 294 ~~~~~~~v~~~g---~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~--~~l~~L~~lL~~~~~~~ 368 (644)
T 2z6h_A 294 NYKNKMMVCQVG---GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH--YGLPVVVKLLHPPSHWP 368 (644)
T ss_dssp CHHHHHHHHHTT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT--THHHHHHHTTSTTCCHH
T ss_pred CHHHHHHHHHcC---CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc--cChHHHHHHhCccCchH
Confidence 345555555432 4677788887754 367777777777777654442 2222 2220 01122333444 468
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHh---cC-------------CCCCCCChHHHHHHHHHHhcc
Q 047448 84 IQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLIL---KK-------------PSHPSRGVPVAINCLAALLKE 147 (249)
Q Consensus 84 i~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l---~~-------------~~~~~~~i~~~v~~Lq~LLr~ 147 (249)
++..|+..|+.|...........+ .+.++.++..| .+-- +. ...+.+-...++.+|..|.+.
T Consensus 369 v~~~a~~~L~nLa~~~~~~~~i~~-~~~i~~Lv~lL-~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 369 LIKATVGLIRNLALCPANHAPLRE-QGAIPRLVQLL-VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHTTSGGGHHHHHH-TTHHHHHHHHH-HHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH-cCCHHHHHHHH-hccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 999999999998764211100100 23335555555 3310 10 000112234588999999999
Q ss_pred chhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhh
Q 047448 148 PMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVT 227 (249)
Q Consensus 148 ~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~ 227 (249)
+..|..+.+.+++++|++++..... .+...|+.-|+.+.+ .|+++..+++.|+-..+.+|+.|+|++||
T Consensus 447 ~~~~~~l~~~~~i~~Lv~lL~~~~~----------~v~~~a~~aL~~l~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 447 VHNRIVIRGLNTIPLFVQLLYSPIE----------NIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCH----------HHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHcCCCH----------HHHHHHHHHHHHHHc-CHHHHHHHHHcCChhHHHHHHcCCCHHHH
Confidence 9999999999999999999976443 344566666777765 48899999999999999999999999999
Q ss_pred HHHHHHHHHHhchh
Q 047448 228 KSALLCIQRLFLGA 241 (249)
Q Consensus 228 ~~al~~~q~~~~~~ 241 (249)
..|..|+..+..+.
T Consensus 516 ~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 516 TYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhccC
Confidence 99999999987665
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.21 E-value=4.5e-05 Score=69.00 Aligned_cols=197 Identities=12% Similarity=0.095 Sum_probs=136.0
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC---hHHHHHHHHHHHHHHHhhhcC
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS---NWFIQEKSCKILASIVRYLKH 101 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~---D~fi~~~a~~iLt~Li~~~~~ 101 (249)
..+..++.+|++ ...++....+..+..+..+.++..+.+.+. ..-.+.-.++. +.-++..|+..|+.|.....
T Consensus 107 ~~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~- 182 (450)
T 2jdq_A 107 GAVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDC--NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS- 182 (450)
T ss_dssp THHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS-
T ss_pred CCHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHC--CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC-
Confidence 356777788875 345667777777888887776555544431 11122333333 57899999999999987521
Q ss_pred CCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc-chhhHHHhhcccccchHhhhccccccchhhhHH
Q 047448 102 DPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKE-PMVRSSFVQADGVKLLTPLISPASTQQSIQLAG 180 (249)
Q Consensus 102 ~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp 180 (249)
+... .......+..| ...++++ +..-...++.+|..+... ++.+..+...++++.|+.++.....
T Consensus 183 -~~~~--~~~~~~~l~~L-~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-------- 248 (450)
T 2jdq_A 183 -PPPE--FAKVSPCLNVL-SWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY-------- 248 (450)
T ss_dssp -SCCC--GGGTGGGHHHH-HHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCH--------
T ss_pred -CCCC--HHHHHHHHHHH-HHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCch--------
Confidence 2221 12235566666 6666543 223334477888888875 4566677778889999999975432
Q ss_pred HHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 181 AMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 181 ~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=||.++...|..+..+-+.|+-..+++++.+++++||.+|+.|+..+..++
T Consensus 249 --~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 249 --KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp --HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred --hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 44466777788888888877776666799999999999999999999999999988543
No 13
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.20 E-value=3e-05 Score=69.76 Aligned_cols=197 Identities=14% Similarity=0.182 Sum_probs=133.9
Q ss_pred hHHHHHHHHHhhh-----------chhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCccccc-ccC--hHHHHHHHHH
Q 047448 25 SYVRVFVSILRDI-----------YKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEP-FLS--NWFIQEKSCK 90 (249)
Q Consensus 25 ~y~~~fv~LL~~~-----------sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~p-fL~--D~fi~~~a~~ 90 (249)
+.++-.+.+|.+- ...+...-.+..+.+++ ++.+-...|.+.. .-.|+-. +|. +.-++..|+.
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv-~~~dna~~~~~~G--~l~~Lv~~lL~s~~~~vr~~Aa~ 104 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLS--GMHLLVGRYLEAGAAGLRWRAAQ 104 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTT--HHHHHHHTTTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHH-hChhhHHHHHHcC--CHHHHHHHHHcCCCHHHHHHHHH
Confidence 4455566666652 11123333344555555 3445566665421 1134555 666 8899999999
Q ss_pred HHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccc-hhhHHHhhcccccchHhhhc
Q 047448 91 ILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEP-MVRSSFVQADGVKLLTPLIS 168 (249)
Q Consensus 91 iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~-~yR~~fw~~~gv~~L~~iL~ 168 (249)
+|+.+++. +|.... .+. .+-+.-| -.+++++ .+......|+.+|..+.+.+ .....|.+.+|+++|+.+|+
T Consensus 105 ~Lg~ia~~---n~~~~~--~vv~~g~l~~L-l~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~ 177 (296)
T 1xqr_A 105 LIGTCSQN---VAAIQE--QVLGLGALRKL-LRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ 177 (296)
T ss_dssp HHHHHHTT---CHHHHH--HHHHTTHHHHH-HHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHhC---CHHHHH--HHHHCCCHHHH-HHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc
Confidence 99999986 443321 111 2333333 3444421 12233455889999999865 44668888999999999997
Q ss_pred cccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 169 PASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 169 ~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.... .+..-||.=|+.++...|+-+..+-+-|+=..+.+||.++|++|+..|+.|+..++...
T Consensus 178 ~~d~----------~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 178 QQVQ----------KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp SSCH----------HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CCCH----------HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 6543 44566787788888889999888888999999999999999999999999999988764
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.19 E-value=6.1e-05 Score=70.66 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=146.3
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCccccccc-C--hHHHHHHH
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFL-S--NWFIQEKS 88 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL-~--D~fi~~~a 88 (249)
++.+..+++. ..+..++.+|++ ...++....+..+..+..+.|.....+.+. ..-.|.-..+ . +..+...+
T Consensus 150 ~~~~~~~~~~---g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~--g~l~~Ll~lL~~~~~~~v~~~a 223 (528)
T 4b8j_A 150 SENTKVVIDH---GAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLAN--GALLPLLAQLNEHTKLSMLRNA 223 (528)
T ss_dssp HHHHHHHHHT---THHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHT--TCHHHHHHTCCTTCCHHHHHHH
T ss_pred HHHHHHHHhC---CcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHC--CcHHHHHHHHhcCCCHHHHHHH
Confidence 4455444443 356778888877 456777777778888877777655555541 1112333344 2 78899999
Q ss_pred HHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhh-HHHhhcccccchHhhh
Q 047448 89 CKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVR-SSFVQADGVKLLTPLI 167 (249)
Q Consensus 89 ~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR-~~fw~~~gv~~L~~iL 167 (249)
+..|+.|... .+... .......+..| ..++.++ +..-...++.+|..+...+.-+ ..+.+.++++.|+.+|
T Consensus 224 ~~~L~~L~~~---~~~~~--~~~~~~~l~~L-~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL 295 (528)
T 4b8j_A 224 TWTLSNFCRG---KPQPS--FEQTRPALPAL-ARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295 (528)
T ss_dssp HHHHHHHHCS---SSCCC--HHHHTTHHHHH-HHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHcC---CCCCc--HHHHHHHHHHH-HHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Confidence 9999999876 22221 12336667777 6666653 2333445888899998877665 5777788899999999
Q ss_pred ccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCC-ChhhhHHHHHHHHHHhchh
Q 047448 168 SPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-NTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 168 ~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~-d~~v~~~al~~~q~~~~~~ 241 (249)
..... .+..-||.=||.++...|..+..+-+.|+-..++.+|.++ ++.|+.+|..++..+...+
T Consensus 296 ~~~~~----------~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~ 360 (528)
T 4b8j_A 296 LHPSP----------SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGN 360 (528)
T ss_dssp TCSCH----------HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSC
T ss_pred cCCCh----------hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCC
Confidence 76543 3445577778889888888888888889999999999999 9999999999999987644
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.13 E-value=1.2e-05 Score=75.83 Aligned_cols=195 Identities=13% Similarity=0.144 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCC
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDP 103 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~ 103 (249)
.+..++.+|.+ ...++....+..+..+...+++..+.+.+.. .-.+.-.+|. ++.++..|+..|+.|... .+
T Consensus 300 ~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~---~~ 373 (530)
T 1wa5_B 300 IPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAG--VLPALRLLLSSPKENIKKEACWTISNITAG---NT 373 (530)
T ss_dssp CHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---CH
T ss_pred cHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcc--hHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---CH
Confidence 45667777764 3467778888888888887777766665420 1112333444 789999999999999875 22
Q ss_pred chhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc--c--hhhHHHhhcccccchHhhhccccccchhhh
Q 047448 104 FAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKE--P--MVRSSFVQADGVKLLTPLISPASTQQSIQL 178 (249)
Q Consensus 104 ~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~--~--~yR~~fw~~~gv~~L~~iL~~~~~~~~~Ql 178 (249)
... .... .+.+..| .+.++.+ +..-...++.+|..+... + +++..+++.++++.|+.++.....
T Consensus 374 ~~~--~~~~~~~~l~~L-~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------ 442 (530)
T 1wa5_B 374 EQI--QAVIDANLIPPL-VKLLEVA--EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN------ 442 (530)
T ss_dssp HHH--HHHHHTTCHHHH-HHHHHHS--CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH------
T ss_pred HHH--HHHHHCCCHHHH-HHHHhcC--CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCH------
Confidence 211 1111 2334444 4444332 223334588889888874 4 788888888999999999975433
Q ss_pred HHHHHHHHHHhchhhhhhHhccc-----------hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 179 AGAMLALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 179 lp~M~~lava~~dig~~v~~~p~-----------g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+...|+.=|+.+++..|. ....+++.||.+.+..|.+|+|++|+..|..++.+++...
T Consensus 443 ----~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 443 ----RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred ----HHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 3345555556666665543 4567888899999999999999999999999999988654
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.11 E-value=6.2e-05 Score=71.53 Aligned_cols=194 Identities=17% Similarity=0.188 Sum_probs=132.6
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCC
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDP 103 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~ 103 (249)
.+..++.+|++ +..++....+..+..+...+++....+.+. ..-.++..+|. +.-++..|+.+|+.|.+. .+
T Consensus 294 ~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~--g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~---~~ 367 (529)
T 3tpo_A 294 VVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATWTMSNITAG---RQ 367 (529)
T ss_dssp CHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS---CH
T ss_pred chHHHHHHhcC-CChhHHHHHHHHHHHHHccchHHHHHHhhc--ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc---cH
Confidence 45667788865 456788888888999998888777777652 12233444555 788999999999999876 33
Q ss_pred chhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--cchhhHHHhhcccccchHhhhccccccchhhhHH
Q 047448 104 FAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK--EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAG 180 (249)
Q Consensus 104 ~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr--~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp 180 (249)
... .... .+.+..| ..++++++. .-...|+.+|..+.. .++.+..+++.+++++|+++|+....
T Consensus 368 ~~~--~~v~~~g~i~~L-v~lL~~~~~--~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~-------- 434 (529)
T 3tpo_A 368 DQI--QQVVNHGLVPFL-VGVLSKADF--KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-------- 434 (529)
T ss_dssp HHH--HHHHHTTHHHHH-HHHHHSSCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH--------
T ss_pred HHH--HHHHhcCcHHHH-HHHhcCCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH--------
Confidence 221 1122 5566666 666666422 222337778887775 56778888999999999999976533
Q ss_pred HHHHHHHHhchhhhhhHh------ccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 181 AMLALAVACFDLSQFIQY------HPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 181 ~M~~lava~~dig~~v~~------~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
.++.+++.=|....+. .+.-+..+++.||-++|-+|.+|+|++|+..|+.-+.+....
T Consensus 435 --~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 435 --KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 2223333333333322 223356789999999999999999999999999988887653
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.06 E-value=0.00024 Score=66.91 Aligned_cols=196 Identities=13% Similarity=0.084 Sum_probs=136.3
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCC
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDP 103 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~ 103 (249)
.+..++.+|++ ...++....+..+..+..+.|+..+.+.+. ..-.+.-.++. +.-++..|+..|+.|..... +
T Consensus 174 ~i~~Lv~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--~ 248 (530)
T 1wa5_B 174 AVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQC--NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK--P 248 (530)
T ss_dssp CHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS--S
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCccchHHHHHc--CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCC--C
Confidence 46678888875 456777777778888887766555555441 11122223333 77888999999999987621 2
Q ss_pred chhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc-chhhHHHhhcccccchHhhhccccccchhhhHHHH
Q 047448 104 FAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKE-PMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAM 182 (249)
Q Consensus 104 ~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M 182 (249)
... .......+..| ...+.++ +..-...++.+|..|... ++.+..+.+.++++.|+.+|.....
T Consensus 249 ~~~--~~~~~~~l~~L-~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~---------- 313 (530)
T 1wa5_B 249 QPD--WSVVSQALPTL-AKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST---------- 313 (530)
T ss_dssp CCC--HHHHGGGHHHH-HHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCH----------
T ss_pred CCc--HHHHHhHHHHH-HHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCCh----------
Confidence 221 12235666666 6666653 222333478889988876 4567777778889999999975432
Q ss_pred HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 183 LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=||.++...|.....+-+.|+-..++.+|.+++++||.+|+.|+..+...+
T Consensus 314 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~ 372 (530)
T 1wa5_B 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372 (530)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 34455677788888888877777667799999999999999999999999999987543
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.00 E-value=0.0002 Score=67.87 Aligned_cols=193 Identities=17% Similarity=0.198 Sum_probs=131.6
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCC
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDP 103 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~ 103 (249)
.+..++.+|++ .+..+....+..+..+...+++....+.+. ..-.++..+|+ +.-++..|+..|+.|.+. .+
T Consensus 275 ~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~~~~~~i~~~--g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~---~~ 348 (510)
T 3ul1_B 275 VVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDA--GALAVFPSLLTNPKTNIQKEATWTMSNITAG---RQ 348 (510)
T ss_dssp CHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHT--TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS---CH
T ss_pred cchhhhhhhcC-CChhhhhHHHHHHHHhhcCCHHHHHHHhhc--cchHHHHHHhcCCCHHHHHHHHHHHHHHHcC---cH
Confidence 45567788876 456788888888999988888877777762 12234455555 788999999999999876 33
Q ss_pred chhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--cchhhHHHhhcccccchHhhhccccccchhhhHH
Q 047448 104 FAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK--EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAG 180 (249)
Q Consensus 104 ~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr--~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp 180 (249)
+.. .... .+.+..| ...+++++. .--..|+.+|..+.. .++.+..+++.+++++|+++|+.....
T Consensus 349 ~~~--~~v~~~g~i~~L-v~lL~~~~~--~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~------- 416 (510)
T 3ul1_B 349 DQI--QQVVNHGLVPFL-VGVLSKADF--KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK------- 416 (510)
T ss_dssp HHH--HHHHHTTHHHHH-HHHHHSSCH--HHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHH-------
T ss_pred HHH--HHHHhcCCHHHH-HHHHcCCCH--HHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHH-------
Confidence 221 1122 4555666 566665422 222337778887776 677888899999999999999765332
Q ss_pred HHHHHHHHhchhhhhhH---h---ccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhc
Q 047448 181 AMLALAVACFDLSQFIQ---Y---HPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 181 ~M~~lava~~dig~~v~---~---~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~ 239 (249)
++.+++.=|..+.+ . .+.-+..+++.||-++|-+|..|+|++|+..|..-+.+...
T Consensus 417 ---i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 417 ---IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 22223222222222 2 22345678999999999999999999999999988887764
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.87 E-value=0.00022 Score=64.39 Aligned_cols=196 Identities=10% Similarity=0.093 Sum_probs=130.7
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCC
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHD 102 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~ 102 (249)
..+..++++|.+ ..+++.......+..+....++..+.+.+. ..-.+.-.++. |+-++..|+..|..|... .
T Consensus 192 ~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~ 265 (450)
T 2jdq_A 192 PCLNVLSWLLFV-SDTDVLADACWALSYLSDGPNDKIQAVIDA--GVCRRLVELLMHNDYKVVSPALRAVGNIVTG---D 265 (450)
T ss_dssp GGHHHHHHHTTC-CCHHHHHHHHHHHHHHTSSSHHHHHHHHHT--TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHCCCcHHHHHHHHc--CcHHHHHHHHCCCchhHHHHHHHHHHHHhhC---C
Confidence 344555566543 234555556666666665555555555431 01112223333 788999999999999775 3
Q ss_pred Cchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhhccccccchhhhHH
Q 047448 103 PFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAG 180 (249)
Q Consensus 103 ~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp 180 (249)
+... .... .+.+..| ...++++ +......++.+|..+.. .++.+..+.+.++++.|+.+++....
T Consensus 266 ~~~~--~~~~~~~~l~~L-~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-------- 332 (450)
T 2jdq_A 266 DIQT--QVILNCSALQSL-LHLLSSP--KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF-------- 332 (450)
T ss_dssp HHHH--HHHHTTTHHHHH-HHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH--------
T ss_pred hHHH--HHHHHCccHHHH-HHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH--------
Confidence 2221 1122 4566777 6666654 22333458899999986 56777788888889999999975433
Q ss_pred HHHHHHHHhchhhhhhHh-ccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 181 AMLALAVACFDLSQFIQY-HPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 181 ~M~~lava~~dig~~v~~-~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=||.++.. .|+....+-+-|+-..+++++.++|++|+..|+.|+..++...
T Consensus 333 --~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 333 --RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp --HHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3445577778888887 5665554546689999999999999999999999999888654
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.85 E-value=0.00017 Score=68.55 Aligned_cols=198 Identities=15% Similarity=0.145 Sum_probs=133.3
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCC
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDP 103 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~ 103 (249)
.+-.|+.+|++....++.....-.+..+...+++....+.+.. .-.++-.+|. +.-++..|+..|..|+.. .+
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G--aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~---~~ 194 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG--AIPAFISLLASPHAHISEQAVWALGNIAGA---GS 194 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhcc---CH
Confidence 4556777776655555555555566666666666666555420 1122333444 788999999999999876 33
Q ss_pred chhhhhhhh-HHHHHHHHHHHhcCCCCCCC---ChHHHHHHHHHHhccchhhHHHhh-cccccchHhhhccccccchhhh
Q 047448 104 FAQRCNSLE-VGIFCYIQLLILKKPSHPSR---GVPVAINCLAALLKEPMVRSSFVQ-ADGVKLLTPLISPASTQQSIQL 178 (249)
Q Consensus 104 ~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~---~i~~~v~~Lq~LLr~~~yR~~fw~-~~gv~~L~~iL~~~~~~~~~Ql 178 (249)
... +... .+.+..| ..++..++.... ....++.+|..+.+.+.....+-. .++++.|+.+|.....
T Consensus 195 ~~r--~~i~~~g~i~~L-l~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~------ 265 (529)
T 3tpo_A 195 AFR--DLVIKHGAIDPL-LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------ 265 (529)
T ss_dssp HHH--HHHHHTTCHHHH-HHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH------
T ss_pred HHH--HHHHHcCCcHHH-HHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH------
Confidence 322 1122 3444555 555554332221 234577888888888766555444 4558999999975543
Q ss_pred HHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 179 AGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 179 lp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=|+....+.++.+..+..-|+-.+++++|.|+++.|+..|+.|+..+..++
T Consensus 266 ----~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 266 ----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp ----HHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ----HHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc
Confidence 44566777788888877777777778899999999999999999999999999987655
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.79 E-value=0.00019 Score=68.06 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=135.1
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCCC
Q 047448 26 YVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHDP 103 (249)
Q Consensus 26 y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~ 103 (249)
.+-.||.+|++....++.....-.+.-+-..+++..+.+.+.. .-.++-.+|+ |.-++..|+..|..|+.. .+
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~G--aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d---~~ 175 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG--AIPAFISLLASPHAHISEQAVWALGNIAGD---GS 175 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHhC---CH
Confidence 5667888887655445444555566666667776666665520 1123334444 788999999999999876 33
Q ss_pred chhhhhhhh-HHHHHHHHHHHhcCCCCCCC---ChHHHHHHHHHHhccchhhHHHhh-cccccchHhhhccccccchhhh
Q 047448 104 FAQRCNSLE-VGIFCYIQLLILKKPSHPSR---GVPVAINCLAALLKEPMVRSSFVQ-ADGVKLLTPLISPASTQQSIQL 178 (249)
Q Consensus 104 ~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~---~i~~~v~~Lq~LLr~~~yR~~fw~-~~gv~~L~~iL~~~~~~~~~Ql 178 (249)
... +... .+.+..| ..++++++.+.. ....++.+|..+.+.+..+..+-. .+.++.|+.++.....
T Consensus 176 ~~r--~~v~~~G~i~~L-l~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~------ 246 (510)
T 3ul1_B 176 AFR--DLVIKHGAIDPL-LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP------ 246 (510)
T ss_dssp HHH--HHHHHTTCHHHH-HHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH------
T ss_pred HHH--HHHHHcCChHHH-HHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH------
Confidence 221 1122 4445555 555555432222 234577788888887765554444 4558999999975443
Q ss_pred HHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 179 AGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 179 lp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=|+....+.++.+..+..-|+-.++++++.|++++|+..|+.|+..+..++
T Consensus 247 ----~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 247 ----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp ----HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ----HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence 45566777788888877888888888899999999999999999999999999887655
No 22
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.77 E-value=0.00086 Score=68.22 Aligned_cols=220 Identities=11% Similarity=0.107 Sum_probs=136.8
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHH
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSC 89 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~ 89 (249)
.+.-..++..+ ..+..|+.++++-.. +..+..+..+.- ..++++..++..+.. -.|...+++ +..++..|+
T Consensus 279 ~~~~~~~~~~~--G~v~~li~Ll~s~~~-~~q~~A~~al~~-aa~~~~~R~~I~~~g---v~~L~~Ll~s~~~~vr~~Al 351 (810)
T 3now_A 279 LDVGNQVVARE--GILQMILAMATTDDE-LQQRVACECLIA-ASSKKDKAKALCEQG---VDILKRLYHSKNDGIRVRAL 351 (810)
T ss_dssp HHHHHHHHHTT--THHHHHHHHHHSSCH-HHHHHHHHHHHH-HTTSHHHHHTTHHHH---HHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhcc--chHHHHHHHhCCCCH-HHHHHHHHHHHH-HcCCcHHHHHHHHcC---cHHHHHHHcCCCHHHHHHHH
Confidence 34444555444 355667777765322 222234444444 456677777776632 145555665 778999999
Q ss_pred HHHHHHHhhhcCCCchhhh-hhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhc-ccccchHhhh
Q 047448 90 KILASIVRYLKHDPFAQRC-NSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQA-DGVKLLTPLI 167 (249)
Q Consensus 90 ~iLt~Li~~~~~~~~~~~~-~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~-~gv~~L~~iL 167 (249)
..|.++.+.+..+++.... ++....++.-+ ..++.++..+.+...-++.+|..|-..++.|..+... +.++.|+.++
T Consensus 352 ~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l-~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL 430 (810)
T 3now_A 352 VGLCKLGSYGGQDAAIRPFGDGAALKLAEAC-RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA 430 (810)
T ss_dssp HHHHHHHTTTTTTTSCCSSTTTHHHHHHHHH-HHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHhccccccCccccchhhccHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh
Confidence 9999998754322221100 23334555555 5555554224455666999999999999999999975 5599999999
Q ss_pred ccccccchhhhHHHHHHHHHHhch------------hhhhhHhc-cc-------------hhHHHhhhchHHHHHhhccC
Q 047448 168 SPASTQQSIQLAGAMLALAVACFD------------LSQFIQYH-PA-------------GRVIVTDLKAKERVMKLMNH 221 (249)
Q Consensus 168 ~~~~~~~~~Qllp~M~~lava~~d------------ig~~v~~~-p~-------------g~~~~~~l~~k~~vm~l~~~ 221 (249)
+.....++|-.+ .+++--+++ +++|.+++ |. -+.|++. |+-....+|+.+
T Consensus 431 ~s~d~~i~~~al---~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp~LV~LL~s 506 (810)
T 3now_A 431 RGGNQSCLYGVV---TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GITTALCALAKT 506 (810)
T ss_dssp HTTCGGGHHHHH---HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHTC
T ss_pred CCCChHHHHHHH---HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCHHHHHHHHcC
Confidence 754333444322 222222321 33333332 11 1455555 999999999999
Q ss_pred CChhhhHHHHHHHHHHhchhhh
Q 047448 222 ENTEVTKSALLCIQRLFLGAKY 243 (249)
Q Consensus 222 ~d~~v~~~al~~~q~~~~~~~~ 243 (249)
++++||.+|..|+..+-.+.++
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~ 528 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKEL 528 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999988655443
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.74 E-value=0.0011 Score=61.15 Aligned_cols=192 Identities=10% Similarity=0.119 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCC
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHD 102 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~ 102 (249)
..+..++++|.+.+..++.+.....+..+ ..+++-...+.+. ..-.+.-.+++ |.-++..|+..|..|... .
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~~~~~~i~~~--g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~---~ 132 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH---Q 132 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---C
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHH-HcCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---C
Confidence 45667777776544455666666656654 3444444444431 11123344444 778999999999999887 3
Q ss_pred Cchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhhccccccchhhhHH
Q 047448 103 PFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAG 180 (249)
Q Consensus 103 ~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp 180 (249)
+... .... .+.+.-| ...++++ +.+....++.+|..+.. .++.|..+.+.+|++.|+.+++.....
T Consensus 133 ~~~~--~~i~~~g~i~~L-~~ll~~~--~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~------- 200 (529)
T 1jdh_A 133 EGAK--MAVRLAGGLQKM-VALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE------- 200 (529)
T ss_dssp TTHH--HHHHHHTHHHHH-HHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH-------
T ss_pred cchH--HHHHHcCCHHHH-HHHHhcC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH-------
Confidence 2221 1121 4555666 6666653 22223335678877776 489999999999999999999755432
Q ss_pred HHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 181 AMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 181 ~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
....-+|.=|..+. ..|..+..+-+-|+=..+++++.+++++++.+|+.++..+
T Consensus 201 --~~~~~a~~~L~~l~-~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 201 --KLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254 (529)
T ss_dssp --HHHHHHHHHHHHHT-TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 11122222222232 3566666666666666666666666666666665555444
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.74 E-value=0.00087 Score=63.81 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=131.9
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHh-cChHHHHHHHhccCCCCcccccc-cC--hHHHHHHHHHHHHHHHhhhc
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLT-ANPKRARLFHDKSLASEDTYEPF-LS--NWFIQEKSCKILASIVRYLK 100 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~-e~p~rv~~F~~~~~~~~~py~pf-L~--D~fi~~~a~~iLt~Li~~~~ 100 (249)
..+..++.+|++ ..+++.+.....+.-|-. ++++....+.+. ..-.|.-.+ ++ +.-++..|...|..|...
T Consensus 243 GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~--GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~-- 317 (458)
T 3nmz_A 243 GCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSAH-- 317 (458)
T ss_dssp HHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT--THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC--
Confidence 357778888874 344555555444444432 234433444331 011122222 22 567778888888888773
Q ss_pred CCCchhhhhhh--hHHHHHHHHHHHhcCCCCCCC---ChHHHHHHHHHHh----ccchhhHHHhhcccccchHhhhcccc
Q 047448 101 HDPFAQRCNSL--EVGIFCYIQLLILKKPSHPSR---GVPVAINCLAALL----KEPMVRSSFVQADGVKLLTPLISPAS 171 (249)
Q Consensus 101 ~~~~~~~~~~~--~~~~l~wL~~~~l~~~~~~~~---~i~~~v~~Lq~LL----r~~~yR~~fw~~~gv~~L~~iL~~~~ 171 (249)
.++.. ... ..+-+..| ..++++++ +.+ -...++.+|..|- ..+++|..+.+.+++++|+.+|+...
T Consensus 318 -~~~nk--~~I~~~~Gal~~L-v~LL~~~~-~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~ 392 (458)
T 3nmz_A 318 -CTENK--ADICAVDGALAFL-VGTLTYRS-QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 392 (458)
T ss_dssp -CHHHH--HHHHHSTTHHHHH-HHHTTCCC-SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC
T ss_pred -CHHHH--HHHHHhcCcHHHH-HHHhcCCC-CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC
Confidence 11111 111 14556666 66666532 222 2344667777776 48999999999999999999998655
Q ss_pred ccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh--hh
Q 047448 172 TQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA--KY 243 (249)
Q Consensus 172 ~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~--~~ 243 (249)
. .+..-||.=|+.+....|+.+..+-+.|+-..+.+||.+++++++.+|..|+..+..++ ||
T Consensus 393 ~----------~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 393 L----------TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp H----------HHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred h----------HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 4 33344666677787678999999999999999999999999999999999999999887 55
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.72 E-value=0.0015 Score=59.99 Aligned_cols=198 Identities=11% Similarity=0.120 Sum_probs=128.6
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHh-cChHHHHHHHhccCCCCccccccc-C--hHHHHHHHHHHHHHHHhhhc
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLT-ANPKRARLFHDKSLASEDTYEPFL-S--NWFIQEKSCKILASIVRYLK 100 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~-e~p~rv~~F~~~~~~~~~py~pfL-~--D~fi~~~a~~iLt~Li~~~~ 100 (249)
..+..++.+|++ ..+++.+.....+.-+-. ++++..+.+.+. ..-.|.-.+| + +.-++..|+..|..|...
T Consensus 127 GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-- 201 (354)
T 3nmw_A 127 GCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSAH-- 201 (354)
T ss_dssp HHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT--
T ss_pred CcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc--
Confidence 357778888874 334444444433433332 234333333321 0111222222 2 556777788888888763
Q ss_pred CCCchhhhhhh--hHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhc----cchhhHHHhhcccccchHhhhccccc
Q 047448 101 HDPFAQRCNSL--EVGIFCYIQLLILKKPSHPS--RGVPVAINCLAALLK----EPMVRSSFVQADGVKLLTPLISPAST 172 (249)
Q Consensus 101 ~~~~~~~~~~~--~~~~l~wL~~~~l~~~~~~~--~~i~~~v~~Lq~LLr----~~~yR~~fw~~~gv~~L~~iL~~~~~ 172 (249)
.++.. ... ..+-+.-| ..++++++... .-...++.+|..|-. .+++|..+.+.+++++|+.+|+..+.
T Consensus 202 -~~~nk--~~i~~~~Gai~~L-v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 202 -CTENK--ADICAVDGALAFL-VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp -CHHHH--HHHHHSTTHHHHH-HHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred -Chhhh--HHHHHhcCcHHHH-HHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 11110 111 24556666 66666532111 123446777777774 89999999999999999999986544
Q ss_pred cchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 173 QQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 173 ~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..-||.=|+.++...|+.+..+-+.|+-..+.+|+.++++++|.+|..|+..+..++
T Consensus 278 ----------~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 278 ----------TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp ----------HHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 33344666677887778999999999999999999999999999999999999999876
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.65 E-value=0.001 Score=64.46 Aligned_cols=194 Identities=10% Similarity=0.106 Sum_probs=122.4
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCC
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHD 102 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~ 102 (249)
..+..++++|.+....++.+.....+..| ..+++-...+.+. ..-.+.-.+|+ |..++..|+..|..|... .
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L-s~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~---~ 129 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKS--GGIPALVKMLGSPVDSVLFYAITTLHNLLLH---Q 129 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHH-TTSHHHHHHHHTT--THHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---S
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHH-hcChhhHHHHHHc--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC---c
Confidence 46677788887644556666666555543 4444443444331 11123334444 789999999999999987 2
Q ss_pred Cchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhhccccccchhhhHH
Q 047448 103 PFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAG 180 (249)
Q Consensus 103 ~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp 180 (249)
+... .... .+.+..| ...++++ +.+....++.+|..+.. .++.|..+.+.+|++.|+.+++.....
T Consensus 130 ~~~~--~~v~~~g~i~~L-v~lL~~~--~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~------- 197 (644)
T 2z6h_A 130 EGAK--MAVRLAGGLQKM-VALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE------- 197 (644)
T ss_dssp TTHH--HHHHHTTHHHHH-HHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCH-------
T ss_pred chhH--HHHHHCCChHHH-HHHHCcC--CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChH-------
Confidence 2221 1222 5666777 6777664 22333335678888885 789999999999999999999765421
Q ss_pred HHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhc
Q 047448 181 AMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 181 ~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~ 239 (249)
.+..-++.=|+... ..|+.|..+-+-|+-..+++++.+++++++..|+.++..+-.
T Consensus 198 --~~~~~a~~~L~nLs-~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 198 --KLLWTTSRVLKVLS-VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp --HHHHHHHHHHHHHT-TCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHHHHHHHh-cCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 11122233233333 367777777777888888888887777777777777766643
No 27
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.63 E-value=0.0011 Score=62.12 Aligned_cols=218 Identities=13% Similarity=0.147 Sum_probs=124.3
Q ss_pred CCHHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHH-------HHHHhcc-----CCCCccccc
Q 047448 10 RSESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRA-------RLFHDKS-----LASEDTYEP 77 (249)
Q Consensus 10 ~~~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv-------~~F~~~~-----~~~~~py~p 77 (249)
.+++.|..+++..+ +..++++|++....++.......+.-|-..++-+. +.+.+.- .....+. +
T Consensus 74 ~~~~~k~~i~~~G~---i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~-~ 149 (457)
T 1xm9_A 74 RSTTNKLETRRQNG---IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNS-N 149 (457)
T ss_dssp SCHHHHHHHHHTTC---HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC------
T ss_pred CCHHHHHHHHHcCC---HHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCcc-c
Confidence 34778877777654 77889999854455555555555555544432222 1111110 0000111 0
Q ss_pred cc---ChHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--------
Q 047448 78 FL---SNWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-------- 146 (249)
Q Consensus 78 fL---~D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-------- 146 (249)
-. .|.-+...|+..|..|......+....+.++.++.++..| .+-....+.+..-++.|+.+|..|-.
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~ 228 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYV-QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHH-HHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred hhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHH-HhhccccCCchHHHHHHHHHHHhcccchhccCcc
Confidence 00 1445666788888888764100000100013345555555 33211111233445555555544421
Q ss_pred -------------------------------------------cchhhHHHhhcccccchHhhhccccccchhhhHHHHH
Q 047448 147 -------------------------------------------EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAML 183 (249)
Q Consensus 147 -------------------------------------------~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~ 183 (249)
.+.--+.+|+.++++.|+.+|+...+. .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~---------~ 299 (457)
T 1xm9_A 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD---------A 299 (457)
T ss_dssp HHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH---------H
T ss_pred hhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH---------H
Confidence 122334678888888899988765443 5
Q ss_pred HHHHHhchhhhhhHhccc-----hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 184 ALAVACFDLSQFIQYHPA-----GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 184 ~lava~~dig~~v~~~p~-----g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+..-||.-|+.+++..+. ++.++.+.|+...+++||.|+|++|+++|..|++.+-.+.
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 557778888888875432 2567778899999999999999999999999999885543
No 28
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.60 E-value=0.00012 Score=65.76 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHH-HhcCCCCCCCChHHHHHHHHHHhcc-chhhHHHhhcccc
Q 047448 84 IQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLL-ILKKPSHPSRGVPVAINCLAALLKE-PMVRSSFVQADGV 160 (249)
Q Consensus 84 i~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~-~l~~~~~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~~gv 160 (249)
-...|..+|..|+... +.. .... .+-+..| -. ++++++ ..--+-|+.+|..+... +.+|..+.+.+|+
T Consensus 56 ~k~~Al~~L~~lv~~~----dna--~~~~~~G~l~~L-v~~lL~s~~--~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 56 EREGALELLADLCENM----DNA--ADFCQLSGMHLL-VGRYLEAGA--AGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHTSH----HHH--HHHHHTTHHHHH-HHTTTTCSS--HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHhCh----hhH--HHHHHcCCHHHH-HHHHHcCCC--HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 4566788888887641 111 1111 2222333 34 555542 22334489999999875 6799999999999
Q ss_pred cchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 161 ~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
++|+.+|+..... .+..-||+=|+.++|++|.+...+.+-||=..+.+++.++|++|+.+|..|+..+..+
T Consensus 127 ~~Ll~LL~~~~~~---------~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 127 RKLLRLLDRDACD---------TVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHHHHHHCSCH---------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCH---------HHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 9999999753222 4557788889999999999988777789999999999999999999999999998765
Q ss_pred h
Q 047448 241 A 241 (249)
Q Consensus 241 ~ 241 (249)
+
T Consensus 198 ~ 198 (296)
T 1xqr_A 198 H 198 (296)
T ss_dssp C
T ss_pred C
Confidence 4
No 29
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.22 E-value=0.0083 Score=54.94 Aligned_cols=213 Identities=12% Similarity=0.102 Sum_probs=129.9
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhh----------chhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC-
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDI----------YKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS- 80 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~----------sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~- 80 (249)
++.|..+++..+ +..++++|..- .+.++.++....+..+-..+++.-..+..... --.+.-.+|+
T Consensus 63 ~e~R~~i~~~G~---l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G-aIp~LV~LL~s 138 (354)
T 3nmw_A 63 EEHRHAMNELGG---LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG-CMRALVAQLKS 138 (354)
T ss_dssp HHHHHHHHHTTH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH-HHHHHHHGGGC
T ss_pred HHHHHHHHHcCC---HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC-cHHHHHHHHCC
Confidence 688888887765 55567777421 23445556666666665555433232321000 0122333444
Q ss_pred -hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHH-hcCCCCCCCChHHHHHHHHHHhc-cchhhHHHh-
Q 047448 81 -NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLI-LKKPSHPSRGVPVAINCLAALLK-EPMVRSSFV- 155 (249)
Q Consensus 81 -D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~-l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw- 155 (249)
|.-++..|+..|..|.... +++.. .... .+-+.-| -.+ ++++ +..-...++.+|..|-. .++.|..+.
T Consensus 139 ~~~~v~~~A~~aL~nLs~~~--~~~~k--~~i~~~G~Ip~L-v~lL~~~~--~~~~~~~A~~aL~nLs~~~~~nk~~i~~ 211 (354)
T 3nmw_A 139 ESEDLQQVIASVLRNLSWRA--DVNSK--KTLREVGSVKAL-MECALEVK--KESTLKSVLSALWNLSAHCTENKADICA 211 (354)
T ss_dssp SCHHHHHHHHHHHHHHHTTC--CHHHH--HHHHHTTHHHHH-HHHHHHCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccC--CHHHH--HHHHHCCCHHHH-HHHHhcCC--CHHHHHHHHHHHHHHHccChhhhHHHHH
Confidence 7789999999999996531 11111 1111 2333444 443 2332 22333447788888888 678888888
Q ss_pred hcccccchHhhhcccccc--chhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHH
Q 047448 156 QADGVKLLTPLISPASTQ--QSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 233 (249)
Q Consensus 156 ~~~gv~~L~~iL~~~~~~--~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~ 233 (249)
..++++.|+.+|+..... +.++ ...+=+..-|+.++.-.|++|..+-+-|+=..+.+||.+++.+|+.+|.-|
T Consensus 212 ~~Gai~~Lv~lL~~~~~~~~~~v~-----~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 286 (354)
T 3nmw_A 212 VDGALAFLVGTLTYRSQTNTLAII-----ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT 286 (354)
T ss_dssp STTHHHHHHHHTTCCCSSSCCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCcHHHHHHHhccCCCcccHHHH-----HHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence 577799999999754321 1111 111111223444444578999999999999999999999999999999999
Q ss_pred HHHHhch
Q 047448 234 IQRLFLG 240 (249)
Q Consensus 234 ~q~~~~~ 240 (249)
+..+-..
T Consensus 287 L~nLa~~ 293 (354)
T 3nmw_A 287 LWNLSAR 293 (354)
T ss_dssp HHHHTSS
T ss_pred HHHHhCC
Confidence 9888743
No 30
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.17 E-value=0.017 Score=58.69 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=132.1
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHH-hcChHHHHHHHhcc-CCCCcccccccC-h--HHHHH
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEML-TANPKRARLFHDKS-LASEDTYEPFLS-N--WFIQE 86 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL-~e~p~rv~~F~~~~-~~~~~py~pfL~-D--~fi~~ 86 (249)
++.|..+++.. .+.+++++|++-+ .++.+....-+..|. ..+|+.+ |.... ...-.|.-.+|. | ...+.
T Consensus 526 ~~~r~~Vv~~G---aip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~--~~~~~~~~aIppLv~LL~~~~~~l~~~ 599 (810)
T 3now_A 526 KELRGKVVQEG---GVKALLRMALEGT-EKGKRHATQALARIGITINPEVS--FSGQRSLDVIRPLLNLLQQDCTALENF 599 (810)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHH--TTTHHHHHTHHHHHHTTSTTSCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhh--hcchhhhcHHHHHHHHhCCCCcHHHHH
Confidence 56776766654 5778888887643 344444444455544 3455421 11000 001123333444 2 23344
Q ss_pred HHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhccchhhHHHhh-cccccch
Q 047448 87 KSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGV-PVAINCLAALLKEPMVRSSFVQ-ADGVKLL 163 (249)
Q Consensus 87 ~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i-~~~v~~Lq~LLr~~~yR~~fw~-~~gv~~L 163 (249)
-|+..|+.|+.. .++.. .... .+.+.-| -+++.++ +..| ..+++++..|...++.+..|.. .++++.|
T Consensus 600 eAl~AL~NLa~~---~d~~~--~~Ii~aG~l~~L-v~LL~s~---~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~L 670 (810)
T 3now_A 600 ESLMALTNLASM---NESVR--QRIIKEQGVSKI-EYYLMED---HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFL 670 (810)
T ss_dssp HHHHHHHHHTTS---CHHHH--HHHHHTTHHHHH-HHHHHSC---CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHH
T ss_pred HHHHHHHHHhcC---CHHHH--HHHHHcCCHHHH-HHHHcCC---CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHH
Confidence 688889999876 22221 1222 4455566 5555553 2333 3489999999999999999985 5669999
Q ss_pred HhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccc-hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh-
Q 047448 164 TPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPA-GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA- 241 (249)
Q Consensus 164 ~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~-g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~- 241 (249)
+.++..... .+..-||.=|+....+.|. .+.+++.-|+-..+.+|+.++|++||++|+.|+..+..++
T Consensus 671 v~LL~s~d~----------~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 671 ALLCEDEDE----------ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp HHGGGCSSH----------HHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCCH----------HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 999976433 3335566667777776664 5666764688899999999999999999999999988654
Q ss_pred hhh
Q 047448 242 KYA 244 (249)
Q Consensus 242 ~~~ 244 (249)
++.
T Consensus 741 e~~ 743 (810)
T 3now_A 741 EIA 743 (810)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.02 E-value=0.017 Score=57.81 Aligned_cols=136 Identities=12% Similarity=0.143 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHHHHhhhcCC
Q 047448 25 SYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILASIVRYLKHD 102 (249)
Q Consensus 25 ~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~Li~~~~~~ 102 (249)
..+..++++|++-...++.......+.. |..+++-...+.+. ..-.+.-.+|+ +.-++..|+..|..|... .
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~~~~~~i~~~--g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~---~ 265 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHN-LSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAITTLHNLLLH---Q 265 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHH---S
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---C
Confidence 4667777777654445566666655555 33444333333331 11123333444 788999999999999887 3
Q ss_pred Cchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhhcccc
Q 047448 103 PFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPAS 171 (249)
Q Consensus 103 ~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~ 171 (249)
+... .... .+.+.-| ..+++++ +......++.+|..+.. .++.|..+.+.+|++.|+.+++...
T Consensus 266 ~~~~--~~v~~~g~v~~L-v~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~ 331 (780)
T 2z6g_A 266 EGAK--MAVRLAGGLQKM-VALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 331 (780)
T ss_dssp TTHH--HHHHHTTHHHHH-HHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC
T ss_pred hhhH--HHHHHcCCHHHH-HHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence 2221 1121 3455555 5566553 22223447778887765 5889999999999999999997553
No 32
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.94 E-value=0.0037 Score=58.44 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcc-chhhHHHhhcc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKE-PMVRSSFVQAD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~-~~yR~~fw~~~ 158 (249)
|..++..|+..|..|... ++... .... .+.+..| -.++++++ ......|+.+|..|... ++.|..+.+.+
T Consensus 15 ~~~~q~~A~~~L~~l~~~---~~~~~--~~i~~~g~i~~L-v~lL~s~~--~~~~~~A~~aL~nLa~~~~~~k~~i~~~G 86 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQ---DESAK--QQVYQLGGICKL-VDLLRSPN--QNVQQAAAGALRNLVFRSTTNKLETRRQN 86 (457)
T ss_dssp CTHHHHHHHHHHHHHTSS---CSSHH--HHHHHTTHHHHH-HHHTTSSC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcC---ChHHH--HHHHHcCCHHHH-HHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 557899999999998643 33221 1222 5566666 66666642 23334599999999987 99999999999
Q ss_pred cccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhcc--------C--------C
Q 047448 159 GVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN--------H--------E 222 (249)
Q Consensus 159 gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~--------~--------~ 222 (249)
|+++|+.+|+...+. .+..-|+.=|+....+ |..|..+-+ ||=..+.++|. + .
T Consensus 87 ~i~~Lv~lL~~~~~~---------~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 87 GIREAVSLLRRTGNA---------EIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp CHHHHHHHHTTCCCH---------HHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred CHHHHHHHHhhCCCH---------HHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence 999999999733221 2223355557777777 888886656 99999999993 2 4
Q ss_pred ChhhhHHHHHHHHHHhchh
Q 047448 223 NTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 223 d~~v~~~al~~~q~~~~~~ 241 (249)
+++|.++|..|+..+-.+.
T Consensus 156 ~~~v~~~a~~aL~nLs~~~ 174 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSAD 174 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHHHHccCH
Confidence 6788889998887776543
No 33
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.89 E-value=0.02 Score=54.36 Aligned_cols=211 Identities=12% Similarity=0.113 Sum_probs=131.3
Q ss_pred CHHHHhhhhhhcchhHHHHHHHHHhhh----------chhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC
Q 047448 11 SESHRAQLLDDDGPSYVRVFVSILRDI----------YKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS 80 (249)
Q Consensus 11 ~~e~r~~~l~~~~~~y~~~fv~LL~~~----------sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~ 80 (249)
.++.|..+++..+ +..++.+|..- .+.+..++....+..|-..++..-..+..... .-.+.-.+|+
T Consensus 178 ~~e~R~~i~~~G~---l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G-aIp~LV~LL~ 253 (458)
T 3nmz_A 178 DEEHRHAMNELGG---LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG-CMRALVAQLK 253 (458)
T ss_dssp SHHHHHHHHHTTH---HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH-HHHHHHHGGG
T ss_pred CHHHHHHHHHCCC---HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC-cHHHHHHHHh
Confidence 4788888877654 56677777531 23445666666666666566544333422100 0123333444
Q ss_pred --hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhc-cchhhHHHh
Q 047448 81 --NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLIL-KKPSHPSRGVPVAINCLAALLK-EPMVRSSFV 155 (249)
Q Consensus 81 --D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l-~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw 155 (249)
|.-++..|+..|..|.... ++... .... .+-+.-| -.++ +++ +..-...++.+|..|-. .++.|..+.
T Consensus 254 s~~~~v~~~A~~aL~nLs~~~--~~~~k--~~I~~~GaI~~L-V~lLl~s~--~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 254 SESEDLQQVIASVLRNLSWRA--DVNSK--KTLREVGSVKAL-MECALEVK--KESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp CSCHHHHHHHHHHHHHHTSSC--CHHHH--HHHHHTTHHHHH-HHHHTTCC--SHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC--CHHHH--HHHHHcCCHHHH-HHHHhcCC--CHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7789999999999986520 11110 1111 3334444 4433 322 22223346778888887 678888888
Q ss_pred -hcccccchHhhhcccccc--chhhhHHHHHHHHHHhc---hhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHH
Q 047448 156 -QADGVKLLTPLISPASTQ--QSIQLAGAMLALAVACF---DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKS 229 (249)
Q Consensus 156 -~~~gv~~L~~iL~~~~~~--~~~Qllp~M~~lava~~---dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~ 229 (249)
..++++.|+.+|+..... +.+ ..-||. -|+.++.-.|++|..+-+-|+=..+.+||.+.+.+|+.+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v--------~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAI--------IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHH--------HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHH
Confidence 577799999999765421 111 122222 244444457889999999999999999999999999999
Q ss_pred HHHHHHHHhch
Q 047448 230 ALLCIQRLFLG 240 (249)
Q Consensus 230 al~~~q~~~~~ 240 (249)
|.-|+..+-..
T Consensus 399 A~~aL~nLa~~ 409 (458)
T 3nmz_A 399 ACGTLWNLSAR 409 (458)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHcC
Confidence 99999888743
No 34
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.69 E-value=0.03 Score=54.96 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhh-hhhhh--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQR-CNSLE--VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQA 157 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~-~~~~~--~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~ 157 (249)
+.-++.-|+..|..|... +..... ....+ ..-+..| .+++.+++ ..-...++.+|..|-+.+..|..+ ..
T Consensus 322 ~~~v~E~Aa~AL~nL~ag---~~~~~~~~~~~v~~~~glp~L-v~LL~s~~--~~v~~~A~~aL~nLs~~~~~~~~I-~~ 394 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAG---RWTYGRYIRSALRQEKALSAI-ADLLTNEH--ERVVKAASGALRNLAVDARNKELI-GK 394 (584)
T ss_dssp CHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHTSHHHHHHH-HHGGGCSC--HHHHHHHHHHHHHHHTTCSCHHHH-HH
T ss_pred CHHHHHHHHHHHHHHHcC---CccccHHHHHHHHHcCcHHHH-HHHHcCCC--HHHHHHHHHHHHHHhCChhHHHHH-Hh
Confidence 577888888888888653 211110 01122 4557788 88888753 344556999999999999999887 67
Q ss_pred ccccchHhhhccccccc--hh-hhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCC--ChhhhHHHHH
Q 047448 158 DGVKLLTPLISPASTQQ--SI-QLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALL 232 (249)
Q Consensus 158 ~gv~~L~~iL~~~~~~~--~~-Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~--d~~v~~~al~ 232 (249)
++++.|+.+|.....+. +. + .+++=||.=|+..+-.-|+-++.+.+.||-..+++|+.+. .+++++.|-.
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~-----~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~ 469 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSE-----DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAAL 469 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCH-----HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchH-----HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHH
Confidence 88999999997652110 00 1 4455688889999988899999999999999999999986 8999999999
Q ss_pred HHHHHhchhhhhhhh
Q 047448 233 CIQRLFLGAKYASFL 247 (249)
Q Consensus 233 ~~q~~~~~~~~~~~~ 247 (249)
+++-+..+++.-+.+
T Consensus 470 vL~nl~~~~elr~~~ 484 (584)
T 3l6x_A 470 VLQTIWGYKELRKPL 484 (584)
T ss_dssp HHHHHHTSHHHHHHH
T ss_pred HHHHHHcCHHHHHHH
Confidence 999888766554433
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.58 E-value=0.0061 Score=53.02 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=78.5
Q ss_pred HHHHHHHHHhc-cchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHH
Q 047448 136 VAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKER 214 (249)
Q Consensus 136 ~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~ 214 (249)
.++.+++.|.. .++.|..+.+.+||++|+.+|+.... .+..-||.=|+......|+.|..+-+-||-..
T Consensus 29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~----------~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~ 98 (233)
T 3tt9_A 29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE----------DVQRAVCGALRNLVFEDNDNKLEVAELNGVPR 98 (233)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH----------HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH----------HHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHH
Confidence 47788988884 57799999999999999999976433 33355777788888778999999999999999
Q ss_pred HHhhcc-CCChhhhHHHHHHHHHHhchh
Q 047448 215 VMKLMN-HENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 215 vm~l~~-~~d~~v~~~al~~~q~~~~~~ 241 (249)
+.+|+. +++++++.+|.-++.-+-.+.
T Consensus 99 Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 99 LLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 999998 589999999988877765443
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.39 Score=48.67 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC----hHHHHHHHHHHHHHHHhhhcCC-CchhhhhhhhHH
Q 047448 40 EETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS----NWFIQEKSCKILASIVRYLKHD-PFAQRCNSLEVG 114 (249)
Q Consensus 40 ~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~----D~fi~~~a~~iLt~Li~~~~~~-~~~~~~~~~~~~ 114 (249)
++.-+.+|.|++..-.+.+-|- +..+ =|.++|. +..++..|+-+|.+|...+... .+. ++..+.
T Consensus 270 ~~~~~a~L~lLsaACi~~~cR~-~I~~-------~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si---~~La~~ 338 (778)
T 3opb_A 270 LQFTKELLRLLSSACIDETMRT-YITE-------NYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINL---KQLSEI 338 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHH-HHHH-------HHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCH---HHHHHH
T ss_pred hHHHHHHHHHHHHHhCCcHHHH-HHHH-------hHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcH---HHHHHH
Confidence 5667889999988653333322 2233 2445555 5678999999999998875322 111 233366
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhccc-ccchHhhhccc-cccchhhhH-------------
Q 047448 115 IFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADG-VKLLTPLISPA-STQQSIQLA------------- 179 (249)
Q Consensus 115 ~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~g-v~~L~~iL~~~-~~~~~~Qll------------- 179 (249)
+..|| .+++ ......|+..|..+=-.++.|..+.+.+| ++.|+.+++.. -..+.|=.+
T Consensus 339 ~~~~L-----~~~~--~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 339 FINAI-----SRRI--VPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHT-----TTCC--HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHH-----hcCC--ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 66666 3322 12256699999999999999999999888 99999999752 112222111
Q ss_pred ------------------HH------------------------------H---------HHHHHHhchhhhhhHhccch
Q 047448 180 ------------------GA------------------------------M---------LALAVACFDLSQFIQYHPAG 202 (249)
Q Consensus 180 ------------------p~------------------------------M---------~~lava~~dig~~v~~~p~g 202 (249)
|. + .+..-|+-=|+.+. ..|.+
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~ 490 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNF 490 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGG
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHH
Confidence 10 0 22223333344444 34888
Q ss_pred hHHHhhhchHHHHHhhccCCChh---hhHHHHHHHHHHhchh
Q 047448 203 RVIVTDLKAKERVMKLMNHENTE---VTKSALLCIQRLFLGA 241 (249)
Q Consensus 203 ~~~~~~l~~k~~vm~l~~~~d~~---v~~~al~~~q~~~~~~ 241 (249)
|..+-+-||=..+++++.+..+. +|..|..|+.++....
T Consensus 491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 98888889988899998887655 8999999999998543
No 37
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.78 E-value=0.22 Score=49.52 Aligned_cols=174 Identities=11% Similarity=0.175 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhhc-hhHHHHHHHHHHHHHHhcChH-----------------HHHHHHhccCCCCccccccc---C--hH
Q 047448 26 YVRVFVSILRDIY-KEETVEYVLALIDEMLTANPK-----------------RARLFHDKSLASEDTYEPFL---S--NW 82 (249)
Q Consensus 26 y~~~fv~LL~~~s-k~dtvqyvL~LidDlL~e~p~-----------------rv~~F~~~~~~~~~py~pfL---~--D~ 82 (249)
-...+++.|++-. .+|+|+++|.-+--++..+++ .++.|.. ..+....++ . |-
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~----~~~~i~~Ll~lL~~~df 136 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIK----QQENVTLLLSLLEEFDF 136 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHH----STHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHc----CCccHHHHHHHhcCccH
Confidence 3566788887764 469999999876656665532 4455554 223333333 3 88
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhhhhh---HHHHHHHHHHHhcCCCCCCCChHH-HHHHHHHHhccchhhHHHhhc-
Q 047448 83 FIQEKSCKILASIVRYLKHDPFAQRCNSLE---VGIFCYIQLLILKKPSHPSRGVPV-AINCLAALLKEPMVRSSFVQA- 157 (249)
Q Consensus 83 fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~---~~~l~wL~~~~l~~~~~~~~~i~~-~v~~Lq~LLr~~~yR~~fw~~- 157 (249)
+++..|.++|+.|... +|... .+.+ +.=++-| -+.|.. +.+-|+. ++-+|.+|-+.+.--+-++.-
T Consensus 137 ~vR~~alqlL~~L~~~---r~~~~--Q~~Il~~p~gi~~L-v~lL~d---~rE~iRneallLL~~Lt~~n~~iQklVAFE 207 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQ---LGPQV--QQIILVSPMGVSRL-MDLLAD---SREVIRNDGVLLLQALTRSNGAIQKIVAFE 207 (651)
T ss_dssp HHHHHHHHHHHHHHHH---SHHHH--HHHHHHSTTHHHHH-HGGGGC---SSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc---CcHHH--HHHHHhCcccHHHH-HHHHhC---chHHHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 9999999999999998 65421 1212 2233344 444443 2233332 788899999988777766665
Q ss_pred ccccchHhhhccccc--cchhhhHHHHHHHHHHhch----hhhhhHhccchhHHHhhhchHHHHHhhccCCCh
Q 047448 158 DGVKLLTPLISPAST--QQSIQLAGAMLALAVACFD----LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENT 224 (249)
Q Consensus 158 ~gv~~L~~iL~~~~~--~~~~Qllp~M~~lava~~d----ig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~ 224 (249)
++++.|++||+.... + +|+..| |.-..|+-|--.....+.|+-.++..|+..+++
T Consensus 208 naFe~Lf~Ii~~Eg~~~G------------givv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~ 268 (651)
T 3grl_A 208 NAFERLLDIITEEGNSDG------------GIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE 268 (651)
T ss_dssp THHHHHHHHHHHHTGGGS------------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred ccHHHHHHHHHhcCCCcc------------chhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence 559999999965432 1 223222 233445555455555555666666666654443
No 38
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.31 E-value=0.59 Score=46.44 Aligned_cols=194 Identities=12% Similarity=0.191 Sum_probs=114.3
Q ss_pred HHHHHHHHhhhchhHHHHH-HHHHHHHHHhcChHHHHHHHhccCCCCcccccccC----hH-----HHHHHHHHHHHHHH
Q 047448 27 VRVFVSILRDIYKEETVEY-VLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS----NW-----FIQEKSCKILASIV 96 (249)
Q Consensus 27 ~~~fv~LL~~~sk~dtvqy-vL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~----D~-----fi~~~a~~iLt~Li 96 (249)
+..++.+|+.. + |.+|+ .+.|+.++-..+++.-+++.- +..|.+.+. ++ -+..-+..+|..|+
T Consensus 168 i~~Lv~lL~d~-r-E~iRneallLL~~Lt~~n~~iQklVAF-----EnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL 240 (651)
T 3grl_A 168 VSRLMDLLADS-R-EVIRNDGVLLLQALTRSNGAIQKIVAF-----ENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL 240 (651)
T ss_dssp HHHHHGGGGCS-S-HHHHHHHHHHHHHHHTTCHHHHHHHHH-----TTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-h-HHHHHHHHHHHHHHhcCCHHHHHHHHH-----hccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 33345555431 2 33333 444555555555544433332 245666666 33 46677778888888
Q ss_pred hhhcCCCchhhhhhhh--HHHHHHHHHHHhcCCCCCC-------CChHHHHHHHHHHhcc-------chhhHHHhhcccc
Q 047448 97 RYLKHDPFAQRCNSLE--VGIFCYIQLLILKKPSHPS-------RGVPVAINCLAALLKE-------PMVRSSFVQADGV 160 (249)
Q Consensus 97 ~~~~~~~~~~~~~~~~--~~~l~wL~~~~l~~~~~~~-------~~i~~~v~~Lq~LLr~-------~~yR~~fw~~~gv 160 (249)
.. ++..+ ... .+++.-| ..++..+..+. ..+..++++...|+.. +.....||+.+++
T Consensus 241 r~---N~sNQ---~~FrEt~~i~~L-~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l 313 (651)
T 3grl_A 241 KN---NNSNQ---NFFKEGSYIQRM-KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLL 313 (651)
T ss_dssp TT---CHHHH---HHHHHTTCGGGG-GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHH
T ss_pred hc---CHHHH---HHHHHcCCHHHH-HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCH
Confidence 87 54322 111 3344444 55554321110 1233466677777664 3467799999999
Q ss_pred cchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhc-----hH----HHHHhhc-cCCChhhhHHH
Q 047448 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLK-----AK----ERVMKLM-NHENTEVTKSA 230 (249)
Q Consensus 161 ~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~-----~k----~~vm~l~-~~~d~~v~~~a 230 (249)
..|+.++....... .+.+.|..=+|+.+|-+|.....+.+.. .. ...|.++ ++...++|..|
T Consensus 314 ~~Ll~ll~~~~~p~--------~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa 385 (651)
T 3grl_A 314 QQLCTILMATGVPA--------DILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAV 385 (651)
T ss_dssp HHHHHHHTCSSCCH--------HHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHHHHHccCCCCH--------HHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHH
Confidence 99999986432221 4557777778888887777766665543 11 1233334 34568999999
Q ss_pred HHHHHHHhchhh
Q 047448 231 LLCIQRLFLGAK 242 (249)
Q Consensus 231 l~~~q~~~~~~~ 242 (249)
..|.+..+.+|+
T Consensus 386 ~~cl~ay~~~N~ 397 (651)
T 3grl_A 386 LYCFQCFLYKNQ 397 (651)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhCCH
Confidence 999999998885
No 39
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=94.13 E-value=0.058 Score=52.88 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHh
Q 047448 111 LEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVAC 189 (249)
Q Consensus 111 ~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~ 189 (249)
.++.++..| +++ +..-...|+.+|+.+.. .++.|..+.+.+||++|+.+|+.... .+..-||
T Consensus 49 ~i~~LV~~L-----~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~----------~vq~~Aa 111 (584)
T 3l6x_A 49 ELPEVIAML-----GFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK----------EVHLGAC 111 (584)
T ss_dssp CHHHHHHHT-----TCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH----------HHHHHHH
T ss_pred cHHHHHHHH-----CCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH----------HHHHHHH
Confidence 346666666 332 21222237888988885 78999999999999999999976433 3335566
Q ss_pred chhhhhhHh-ccchhHHHhhhchHHHHHhhccC-CChhhhHHHHHHHHHHhch
Q 047448 190 FDLSQFIQY-HPAGRVIVTDLKAKERVMKLMNH-ENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 190 ~dig~~v~~-~p~g~~~~~~l~~k~~vm~l~~~-~d~~v~~~al~~~q~~~~~ 240 (249)
.=|+....+ .++.|..+-+-||-..+.+||.+ .+++++.+|--|+.-+-.+
T Consensus 112 ~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 112 GALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 667777765 58889989899999999999997 6899999998887766543
No 40
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.74 E-value=0.36 Score=46.28 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=42.6
Q ss_pred HHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 183 LALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+.+++++=||||..+.|+...+++.+ .+-+..++++||..+|.|.-|+....
T Consensus 443 ~~~~~~~wilGey~~~~~~~~~~l~~l------~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 443 DARAAMIWIVGEYAERIDNADELLESF------LEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp HHHHHHHHHHHTTCTTCTTHHHHHHHH------STTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccccccCHHHHHHHH------HHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 567888999999999998876666554 34456789999999999999998764
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.94 E-value=0.41 Score=40.47 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.1
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
+...+.+++.++|++||.+|..++.++-
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 4456788899999999999999988764
No 42
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=92.93 E-value=0.3 Score=42.18 Aligned_cols=137 Identities=9% Similarity=0.068 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-cchhhHHHhhcccc
Q 047448 83 FIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK-EPMVRSSFVQADGV 160 (249)
Q Consensus 83 fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr-~~~yR~~fw~~~gv 160 (249)
-++..|+..|..|... +++.. .... .+-+..| -.+|++++.+-+ ..++.+|..|-. .++.|..+.+.+||
T Consensus 25 ~~q~~Aa~~l~~L~~~---~~~~r--~~I~~~G~Ip~L-V~lL~s~~~~vq--~~Aa~aL~nLa~~~~~nk~~I~~~GaI 96 (233)
T 3tt9_A 25 SRISAAATFIQHECFQ---KSEAR--KRVNQLRGILKL-LQLLKVQNEDVQ--RAVCGALRNLVFEDNDNKLEVAELNGV 96 (233)
T ss_dssp HHHHHHHHHHHHHHHH---CHHHH--HHHHHTTHHHHH-HHGGGCCCHHHH--HHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHcC---CcHHH--HHHHHcCCHHHH-HHHHcCCCHHHH--HHHHHHHHHHHhCCHHHHHHHHHcCCH
Confidence 4566677788777654 32221 1122 4445566 666666432222 338889999987 58999999999999
Q ss_pred cchHhhhcc-ccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhcc----------------CCC
Q 047448 161 KLLTPLISP-ASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN----------------HEN 223 (249)
Q Consensus 161 ~~L~~iL~~-~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~----------------~~d 223 (249)
++|+.+|+. ....++ ...+-|..-++ .+++.|..+-+- |-..+++++. ..|
T Consensus 97 ~~Lv~lL~~~~~~~~~-------e~a~~aL~nLS----~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 97 PRLLQVLKQTRDLETK-------KQITGLLWNLS----SNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHHHCCCHHHH-------HHHHHHHHHHH----TSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHccCCCHHHH-------HHHHHHHHHHH----cChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999974 332222 11122334343 245555555443 4444455432 248
Q ss_pred hhhhHHHHHHHHHHhc
Q 047448 224 TEVTKSALLCIQRLFL 239 (249)
Q Consensus 224 ~~v~~~al~~~q~~~~ 239 (249)
++|+++|--|+.-+-.
T Consensus 165 ~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999999887754
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.89 E-value=0.78 Score=43.93 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhh--cc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQ--AD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~--~~ 158 (249)
+.+|+-.|+..+..+... .|+.. + ...+++-| ...+..+ +..-...|+.+|.++.....-.. ++. .+
T Consensus 134 ~~~VRk~A~~al~~i~~~---~p~~~--~--~~~~~~~l-~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~-~~~l~~~ 202 (591)
T 2vgl_B 134 DPYVRKTAAVCVAKLHDI---NAQMV--E--DQGFLDSL-RDLIADS--NPMVVANAVAALSEISESHPNSN-LLDLNPQ 202 (591)
T ss_dssp CHHHHHHHHHHHHHHHHS---SCCCH--H--HHHHHHHH-HHTTSCS--CHHHHHHHHHHHHHHTTSCCSCC-SCCCHHH
T ss_pred ChHHHHHHHHHHHHHHhh---Chhhc--c--cccHHHHH-HHHhCCC--ChhHHHHHHHHHHHHHhhCCCcc-chhccHH
Confidence 789999999999999886 44331 0 13566677 6666543 22223346677777765542000 000 01
Q ss_pred cccchHhhhccccccchhhhH------------------HHH---------HHHHHHhchhhhhhH---hccchhHH-Hh
Q 047448 159 GVKLLTPLISPASTQQSIQLA------------------GAM---------LALAVACFDLSQFIQ---YHPAGRVI-VT 207 (249)
Q Consensus 159 gv~~L~~iL~~~~~~~~~Qll------------------p~M---------~~lava~~dig~~v~---~~p~g~~~-~~ 207 (249)
.+..|++.+.....-.+..++ +.+ .++--||.=|+++.. +.|++-.. ++
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~ 282 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLK 282 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 122222222111100111111 100 222234444555543 33554433 33
Q ss_pred hhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 208 DLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 208 ~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+++ .....|++ +|++|||-||.++.++....
T Consensus 283 ~~~--~~L~~L~~-~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 283 KLA--PPLVTLLS-GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp HTH--HHHHHHTT-SCHHHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHhc-CCccHHHHHHHHHHHHHHhC
Confidence 332 33346765 89999999999999998654
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.75 E-value=1.8 Score=35.87 Aligned_cols=133 Identities=16% Similarity=0.202 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhccchhhHHHhhc--
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILK-KPSHPSRGVPVAINCLAALLKEPMVRSSFVQA-- 157 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~-~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~-- 157 (249)
||-.+..|..-|..++.. .++.. ......+++.| ...+. .+ +..-...|..++..|.+. .+..|-..
T Consensus 28 ~w~~R~~a~~~L~~l~~~---~~~~~--~~~~~~i~~~L-~~~l~kd~--~~~V~~~a~~~l~~la~~--l~~~~~~~~~ 97 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTD---HPKLE--NGEYGALVSAL-KKVITKDS--NVVLVAMAGKCLALLAKG--LAKRFSNYAS 97 (242)
T ss_dssp SHHHHHHHHHHHHHHHHH---CSSBC--CCCCHHHHHHH-HHHHHHCS--CHHHHHHHHHHHHHHHHH--HGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc---CCCCC--CCCHHHHHHHH-HHHhccCC--CHHHHHHHHHHHHHHHHH--HhhhHHHHHH
Confidence 899999999999999987 22211 11225667777 77763 42 444445688999998853 44445442
Q ss_pred ccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 158 DGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 158 ~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
.-++.|+..+..... .+-.-|+.=+..++...+- ..++ +.+...+.|+++.||.+++..+..+
T Consensus 98 ~ilp~ll~~l~d~~~----------~vr~~a~~aL~~~~~~~~~-~~ll------~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKP----------NVVTALREAIDAIYASTSL-EAQQ------ESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHHHGGGCCCH----------HHHHHHHHHHHHHHTTSCH-HHHH------HHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHcCCH-HHHH------HHHHHHHcCCChHHHHHHHHHHHHH
Confidence 237777777754432 2222233334444444331 2333 3467889999999999999999998
Q ss_pred hch
Q 047448 238 FLG 240 (249)
Q Consensus 238 ~~~ 240 (249)
+..
T Consensus 161 l~~ 163 (242)
T 2qk2_A 161 LTR 163 (242)
T ss_dssp HTT
T ss_pred HHH
Confidence 754
No 45
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.73 E-value=0.79 Score=44.30 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=26.0
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+...+.+++.++|++|||-||.++.++..++
T Consensus 314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~ 344 (618)
T 1w63_A 314 AINILGRFLLNNDKNIRYVALTSLLKTVQTD 344 (618)
T ss_dssp HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHhhC
Confidence 5566777889999999999999999988665
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=91.54 E-value=2.3 Score=38.99 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGV 160 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv 160 (249)
++.|+..|+..++.++..- + . +...+.++..| ......+ +..--.+++.++..+... ....+....-+
T Consensus 454 ~~~Vr~~a~~~l~~l~~~~--~--~---~~~~~~llp~l-~~~~~~~--~~~~R~~a~~~l~~l~~~--~~~~~~~~~~~ 521 (588)
T 1b3u_A 454 VYAIREAATSNLKKLVEKF--G--K---EWAHATIIPKV-LAMSGDP--NYLHRMTTLFCINVLSEV--CGQDITTKHML 521 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHH--C--H---HHHHHHTHHHH-HHTTTCS--CHHHHHHHHHHHHHHHHH--HHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHHHHh--C--c---hhHHHHHHHHH-HHHhhCC--CHHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 5678888888888887651 1 1 11224555555 4433321 222222366666666542 11112223446
Q ss_pred cchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 161 ~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+.|...++.... .+-..+|.=+|.+++.. |...+.. .....+.++++++|++||..|..|+..+
T Consensus 522 ~~l~~~l~d~~~----------~Vr~~a~~~l~~l~~~~--~~~~~~~-~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 522 PTVLRMAGDPVA----------NVRFNVAKSLQKIGPIL--DNSTLQS-EVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHGGGCSCH----------HHHHHHHHHHHHHGGGS--CHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCc----------hHHHHHHHHHHHHHHHh--chhhhHH-HHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 666666654332 22233555566666554 3333321 2455667788999999999999998764
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.40 E-value=4.5 Score=32.08 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=20.6
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+...+.++++++|+.||..|..++.++
T Consensus 170 ~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 170 VRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455666777888888888888887764
No 48
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=91.13 E-value=1.4 Score=44.67 Aligned_cols=213 Identities=13% Similarity=0.119 Sum_probs=118.5
Q ss_pred HHHHhhhhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChH------HHHHHHhccCC------CC-c-----
Q 047448 12 ESHRAQLLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPK------RARLFHDKSLA------SE-D----- 73 (249)
Q Consensus 12 ~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~------rv~~F~~~~~~------~~-~----- 73 (249)
++.|+.+.+.. .+...++.++++-...++.--+++.+.-+....|. ....|..+++. +. +
T Consensus 365 ~~VKe~L~~d~--~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~ 442 (778)
T 3opb_A 365 ASVKIMIRSNE--SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK 442 (778)
T ss_dssp SHHHHHHHHCH--HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHH
T ss_pred HHHHHHHHhCH--HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccch
Confidence 45665555443 66777888887633445555577778877765542 22233322210 00 0
Q ss_pred ------------------ccccccC--hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhh-HHHHHHHHHHHhcCCCCCCC
Q 047448 74 ------------------TYEPFLS--NWFIQEKSCKILASIVRYLKHDPFAQRCNSLE-VGIFCYIQLLILKKPSHPSR 132 (249)
Q Consensus 74 ------------------py~pfL~--D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~-~~~l~wL~~~~l~~~~~~~~ 132 (249)
+....++ +.-++..++++|..|... ++.. .... .+-+.-| -.++.+.. ..+
T Consensus 443 ~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d----~~~R--~~lvqqGal~~L-L~lL~s~~-~~~ 514 (778)
T 3opb_A 443 EDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS----KNFI--PQLAQQGAVKII-LEYLANKQ-DIG 514 (778)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS----GGGH--HHHHHTTHHHHH-HHHTTCC----C
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----HHHH--HHHHHCCCHHHH-HHHHhcCC-Ccc
Confidence 1111111 567777888888888543 2111 1222 4444444 44444421 111
Q ss_pred --ChHHHHHHHHHHhccchhhHHHhh---cccccchHhhhcc--cccc---------chhhhHHHHHHHHHHhchhhhhh
Q 047448 133 --GVPVAINCLAALLKEPMVRSSFVQ---ADGVKLLTPLISP--ASTQ---------QSIQLAGAMLALAVACFDLSQFI 196 (249)
Q Consensus 133 --~i~~~v~~Lq~LLr~~~yR~~fw~---~~gv~~L~~iL~~--~~~~---------~~~Qllp~M~~lava~~dig~~v 196 (249)
.-..|+++|+.++.......+|-. .+++++|+.+|.. .+.. .+.|-.++ .-=|+-.+
T Consensus 515 ~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feA-------L~ALTNLA 587 (778)
T 3opb_A 515 EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEA-------LLALTNLA 587 (778)
T ss_dssp CHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHH-------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHH-------HHHHHHHh
Confidence 123599999999987777777743 3679999999973 2110 00111111 11122222
Q ss_pred Hhcc-----c-hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchhh
Q 047448 197 QYHP-----A-GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAK 242 (249)
Q Consensus 197 ~~~p-----~-g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~~ 242 (249)
. +| + .+.|+..-|+=..+.+||.++++.||..|..++--++.+.+
T Consensus 588 s-~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 588 S-SETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp H-CCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred c-CCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence 2 23 1 35577656889999999999999999999999999997654
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.06 E-value=0.46 Score=45.99 Aligned_cols=170 Identities=13% Similarity=0.141 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHh-----------ccCCCCcc-cccc-cChHHHHHHHHHHHHHHHhhhcCCCchhh
Q 047448 41 ETVEYVLALIDEMLTANPKRARLFHD-----------KSLASEDT-YEPF-LSNWFIQEKSCKILASIVRYLKHDPFAQR 107 (249)
Q Consensus 41 dtvqyvL~LidDlL~e~p~rv~~F~~-----------~~~~~~~p-y~pf-L~D~fi~~~a~~iLt~Li~~~~~~~~~~~ 107 (249)
.++...+.++.++...+|+..+.|.. .......| |... ..|+|.+....++|+.+... +|..
T Consensus 194 ~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~-- 268 (618)
T 1w63_A 194 GVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDS-- 268 (618)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHH--
T ss_pred hHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHH--
Confidence 45556677788887776654333322 00000000 1111 23788888888888877543 3222
Q ss_pred hhhhhHHHHHHHHHHHhcCCC---C-CCCChHHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHH
Q 047448 108 CNSLEVGIFCYIQLLILKKPS---H-PSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAML 183 (249)
Q Consensus 108 ~~~~~~~~l~wL~~~~l~~~~---~-~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~ 183 (249)
.+.+++.| ...+++.+ + +..-+-.|++++..+-..+..+. ..++.|...|.....++.
T Consensus 269 ----~~~~~~~L-~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~~d~~vr-------- 330 (618)
T 1w63_A 269 ----SEAMNDIL-AQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLNNDKNIR-------- 330 (618)
T ss_dssp ----HHTTHHHH-HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTCSSTTTH--------
T ss_pred ----HHHHHHHH-HHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhCCCCchH--------
Confidence 23444555 44443211 1 11122235566555432222221 346677777765444333
Q ss_pred HHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 184 ALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 184 ~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
-+|..=|+++++++|. .+.. ....|+..+.++|+.||..|+.++-++...
T Consensus 331 --~~aL~~L~~i~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 331 --YVALTSLLKTVQTDHN---AVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp --HHHHHHHHHHHHHHHH---HHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHhhCHH---HHHH--HHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 3455558888888774 3333 566899999999999999999998887643
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.72 E-value=1.2 Score=35.76 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=20.5
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+...+.++++++|+.||..|..++.++=.++
T Consensus 175 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 175 VRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 4566777888888888888888877665443
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=90.53 E-value=3.9 Score=33.81 Aligned_cols=134 Identities=12% Similarity=0.109 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGV 160 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv 160 (249)
+.-++..|+..++.|+.... +.. ....+.++.-| ...++.+ +..--..+..+|.++...-.+. .-+
T Consensus 70 ~~~V~~~a~~~l~~la~~l~--~~~---~~~~~~ilp~l-l~~l~d~--~~~vr~~a~~aL~~~~~~~~~~------~ll 135 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLA--KRF---SNYASACVPSL-LEKFKEK--KPNVVTALREAIDAIYASTSLE------AQQ 135 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHG--GGG---HHHHHHHHHHH-HHGGGCC--CHHHHHHHHHHHHHHHTTSCHH------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHh--hhH---HHHHHHHHHHH-HHHHcCC--CHHHHHHHHHHHHHHHHcCCHH------HHH
Confidence 45688899999999997632 222 23345566666 5555442 2222244777787777643321 114
Q ss_pred cchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhc-cc--hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYH-PA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 161 ~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~-p~--g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+.|...++....+ +-.-++.=||..+..+ |. +...+.. .=..++++|++++++||..|..|+..+
T Consensus 136 ~~l~~~l~~~~~~----------vr~~~l~~l~~~l~~~~~~~~~~~~l~~--l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 136 ESIVESLSNKNPS----------VKSETALFIARALTRTQPTALNKKLLKL--LTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp HHHHHHTTCSCHH----------HHHHHHHHHHHHHTTCCGGGCCHHHHHH--HHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChH----------HHHHHHHHHHHHHHHcCCCCccHHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 4555555543322 2233444577766655 43 3444443 456788999999999999999999998
Q ss_pred hch
Q 047448 238 FLG 240 (249)
Q Consensus 238 ~~~ 240 (249)
+..
T Consensus 204 ~~~ 206 (242)
T 2qk2_A 204 IKL 206 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 844
No 52
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=90.22 E-value=3 Score=38.23 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGV 160 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv 160 (249)
|..++..|...|..++.. .+. +...+.++.++ ..+..++ +...-..+++++..+...-. ...+ .+-+
T Consensus 100 ~~~vR~~a~~~L~~l~~~---~~~----~~~~~~l~~~l-~~l~~~~--~~~~R~~a~~~l~~~~~~~~--~~~~-~~l~ 166 (588)
T 1b3u_A 100 ETVVRDKAVESLRAISHE---HSP----SDLEAHFVPLV-KRLAGGD--WFTSRTSACGLFSVCYPRVS--SAVK-AELR 166 (588)
T ss_dssp CHHHHHHHHHHHHHHHTT---SCH----HHHHHTHHHHH-HHHHTCS--SHHHHHHHGGGHHHHTTTSC--HHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHHH---CCH----HHHHHHHHHHH-HHHhcCC--CcHHHHHHHHHHHHHHHhcC--HHHH-HHHH
Confidence 678999999999999876 321 12235566777 6555432 11111124444444432211 0000 1113
Q ss_pred cchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 161 ~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
+.+..+++.... .+-.-||.=+|.++++.|... .... .-..+++++++++++||..|+.|+..+.
T Consensus 167 ~~l~~l~~d~~~----------~VR~~a~~~l~~l~~~~~~~~-~~~~--l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 167 QYFRNLCSDDTP----------MVRRAAASKLGEFAKVLELDN-VKSE--IIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHTCSCH----------HHHHHHHHHHHHHHHTSCHHH-HHHT--HHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHhCCCCH----------HHHHHHHHHHHHHHHHhcHHh-HHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 333344332221 222345555666666554321 1111 2334555666666666666666665554
No 53
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=89.68 E-value=8 Score=38.04 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhhh-c-hhHHHHHHHHHHHHHHhcC-----hHHHHHHHhccCCCCcccccccC--hHHHHHHHHHHHHH
Q 047448 24 PSYVRVFVSILRDI-Y-KEETVEYVLALIDEMLTAN-----PKRARLFHDKSLASEDTYEPFLS--NWFIQEKSCKILAS 94 (249)
Q Consensus 24 ~~y~~~fv~LL~~~-s-k~dtvqyvL~LidDlL~e~-----p~rv~~F~~~~~~~~~py~pfL~--D~fi~~~a~~iLt~ 94 (249)
+.+...+..++... + ..++-++-..++--.+... ++--..+.+ .... .+. +..|+..++.+++.
T Consensus 44 p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~------~ll~-~l~~~~~~vr~~~a~~i~~ 116 (852)
T 4fdd_A 44 PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKS------ECLN-NIGDSSPLIRATVGILITT 116 (852)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHH------HHHT-TTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHH------HHHH-HHcCCCHHHHHHHHHHHHH
Confidence 35555666777642 2 3455555555666555421 111111111 0111 122 67899999999999
Q ss_pred HHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhc-------ccccchHhhh
Q 047448 95 IVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQA-------DGVKLLTPLI 167 (249)
Q Consensus 95 Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~-------~gv~~L~~iL 167 (249)
++... .+ +.-+.++..| .+.+.++ +......++.+|..++..- +..+-+. .-++.|+..+
T Consensus 117 ia~~~--~~------~~wp~ll~~L-~~~l~~~--~~~~r~~al~~L~~i~~~~--~~~~~~~~~~~~~~~il~~l~~~l 183 (852)
T 4fdd_A 117 IASKG--EL------QNWPDLLPKL-CSLLDSE--DYNTCEGAFGALQKICEDS--AEILDSDVLDRPLNIMIPKFLQFF 183 (852)
T ss_dssp HHHHT--TT------TTCTTHHHHH-HHHHSCS--SHHHHHHHHHHHHHHHHHH--TTHHHHCSSSSCHHHHHHHHTTTT
T ss_pred HHHhc--Cc------cccHHHHHHH-HHHHcCC--CHHHHHHHHHHHHHHHHHh--HHHhchhhhcchHHHHHHHHHHHh
Confidence 99873 11 1123445555 5555543 2233445888888887543 3333221 1144444444
Q ss_pred ccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhh-chHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 168 SPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 168 ~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l-~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+.... .+-.-|+.=++.|++..|.. ....+ +.=..+.++++++|++||..|..|+..++...
T Consensus 184 ~~~~~----------~vR~~A~~aL~~~~~~~~~~--~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~ 246 (852)
T 4fdd_A 184 KHSSP----------KIRSHAVACVNQFIISRTQA--LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVR 246 (852)
T ss_dssp TCSSH----------HHHHHHHHHHHTTTTTTCHH--HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCCH----------HHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 43222 22233444467788765532 22211 13345677889999999999999999998654
No 54
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=88.68 E-value=1.3 Score=43.80 Aligned_cols=135 Identities=15% Similarity=0.117 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcccccc
Q 047448 83 FIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKL 162 (249)
Q Consensus 83 fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~gv~~ 162 (249)
-++..|...|..|.... + +...+.++.++ ...++++ +...-..++.+|..+.........-.-.+.++.
T Consensus 336 ~vr~~a~~~L~~la~~~---~-----~~~~~~l~~~l-~~~l~~~--~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVY---R-----DELLPHILPLL-KELLFHH--EWVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp CHHHHHHHHHHHHHHHH---G-----GGGHHHHHHHH-HHHHTCS--SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc---c-----HHHHHHHHHHH-HHHhcCC--CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 45667777777777652 1 23346677777 7777654 233344588888888876542111111233667
Q ss_pred hHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccc--hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 163 LTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 163 L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~--g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
|++.++.... .+-..||.=+|.|....+. ....+. +.=..+++.|.+++++||..|..|+..+..+
T Consensus 405 l~~~l~d~~~----------~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 405 LIQCLSDKKA----------LVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHTTCSSH----------HHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCH----------HHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 7777654322 4556677778887776543 122222 1334566778889999999999999998754
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.61 E-value=11 Score=31.34 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=20.0
Q ss_pred hHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 211 AKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 211 ~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
+-..+.+++.+++ ||..|..|+.++=
T Consensus 224 ~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 224 VLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp GHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred hHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 4566777887654 9999999998863
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=86.20 E-value=6.6 Score=34.67 Aligned_cols=139 Identities=11% Similarity=0.053 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcC--C-------CchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhh
Q 047448 81 NWFIQEKSCKILASIVRYLKH--D-------PFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVR 151 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~--~-------~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR 151 (249)
+..++..|+..|-.++...-. . +... ++....+-++| -+.+.+++. .- ..+.+++..+.+....+
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~--~~~~~~ik~~l-l~~l~~~~~--~v-~~~~~~i~~ia~~~~~~ 123 (462)
T 1ibr_B 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID--ANARREVKNYV-LQTLGTETY--RP-SSASQCVAGIACAEIPV 123 (462)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC--HHHHHHHHHHH-HHHTTCCCS--SS-CSHHHHHHHHHHHHGGG
T ss_pred ChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCC--HHHHHHHHHHH-HHHhCCCCc--hh-hHHHHHHHHHHHHhccc
Confidence 346777788777777643100 0 0010 12223444455 444444322 22 44888888887654211
Q ss_pred HHHhhcccccchHhhhcccc-ccchhhhHHHHHHHHHHhchhhhhhHhc-cc-hhHHHhhhchHHHHHhhccCC--Chhh
Q 047448 152 SSFVQADGVKLLTPLISPAS-TQQSIQLAGAMLALAVACFDLSQFIQYH-PA-GRVIVTDLKAKERVMKLMNHE--NTEV 226 (249)
Q Consensus 152 ~~fw~~~gv~~L~~iL~~~~-~~~~~Qllp~M~~lava~~dig~~v~~~-p~-g~~~~~~l~~k~~vm~l~~~~--d~~v 226 (249)
.-| .+-++.|+..+.... +. .+...|+.=++.+++.+ |. ....++. .-..++.+|.++ +++|
T Consensus 124 -~~w-~~ll~~L~~~l~~~~~~~---------~~r~~al~~l~~l~~~~~~~~~~~~~~~--ll~~l~~~l~~~~~~~~v 190 (462)
T 1ibr_B 124 -NQW-PELIPQLVANVTNPNSTE---------HMKESTLEAIGYICQDIDPEQLQDKSNE--ILTAIIQGMRKEEPSNNV 190 (462)
T ss_dssp -TCC-TTHHHHHHHHHHCTTCCH---------HHHHHHHHHHHHHHHHSCGGGTGGGHHH--HHHHHHHHHSTTCCCHHH
T ss_pred -ccc-HHHHHHHHHHhccCCCCH---------HHHHHHHHHHHHHHHhCCchhhHhHHHH--HHHHHHHHhCCCCCCHHH
Confidence 124 344777777775431 21 22344555566666655 32 1122222 556788899998 8999
Q ss_pred hHHHHHHHHHHh
Q 047448 227 TKSALLCIQRLF 238 (249)
Q Consensus 227 ~~~al~~~q~~~ 238 (249)
|+.|+.|+..++
T Consensus 191 r~~a~~~l~~~~ 202 (462)
T 1ibr_B 191 KLAATNALLNSL 202 (462)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 57
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=81.76 E-value=4.6 Score=34.42 Aligned_cols=142 Identities=8% Similarity=0.070 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHH-HHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhh-HHHh-hc
Q 047448 81 NWFIQEKSCKILAS-IVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVR-SSFV-QA 157 (249)
Q Consensus 81 D~fi~~~a~~iLt~-Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR-~~fw-~~ 157 (249)
+|.-+..|..-|+. ++.. .++..........+++-| ...+.+ |.|..-+..|++|+..|. ...| ..|- .+
T Consensus 29 ~w~eRk~al~~L~~~~~~~---~~~i~~~~~~~~~~~~~L-~~~l~~-D~n~~v~~~A~~al~~la--~~l~~~~f~~~y 101 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQ---TKKLKSTSQNYSNLLGIY-GHIIQK-DANIQAVALAAQSVELIC--DKLKTPGFSKDY 101 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGG---CCCBCCTTCCCHHHHHHH-HHHHHH-CSCHHHHHHHHHHHHHHH--HHHCTTTSCHHH
T ss_pred CHHHHHHHHHHHHHHHHhc---CCccccCcccHHHHHHHH-HHHhcc-CCCHHHHHHHHHHHHHHH--HhcccccccHHH
Confidence 89999989988888 8764 222210001114556666 666632 223344566889998887 4455 4454 33
Q ss_pred c--cccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccc-hhH-HHhhhchHHHHHhhccCCChhhhHHHHHH
Q 047448 158 D--GVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPA-GRV-IVTDLKAKERVMKLMNHENTEVTKSALLC 233 (249)
Q Consensus 158 ~--gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~-g~~-~~~~l~~k~~vm~l~~~~d~~v~~~al~~ 233 (249)
- -++.+++.+..+...+ ..-|+.=+-.++.+.+. .-. .++. .=+.++..|.|+++.||.+|+.+
T Consensus 102 ~~~llp~ll~~l~dkk~~V----------~~aa~~al~~i~~~~~~~~~~~~l~~--ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSV----------IEAIRKALLTICKYYDPLASSGRNED--MLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHH----------HHHHHHHHHHHHHHSCTTCTTCTTHH--HHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHH----------HHHHHHHHHHHHHHccccccCCcHHH--HHHHHHHHHcCCChHHHHHHHHH
Confidence 2 3777777775543221 11111114445554421 100 0112 33466789999999999999999
Q ss_pred HHHHhchh
Q 047448 234 IQRLFLGA 241 (249)
Q Consensus 234 ~q~~~~~~ 241 (249)
+-..+...
T Consensus 170 l~~~~~~~ 177 (249)
T 2qk1_A 170 FNASMKEE 177 (249)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHc
Confidence 99988654
No 58
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.09 E-value=30 Score=31.55 Aligned_cols=186 Identities=10% Similarity=0.114 Sum_probs=110.0
Q ss_pred hhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccC-----hHHHHHHHHHHH
Q 047448 18 LLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLS-----NWFIQEKSCKIL 92 (249)
Q Consensus 18 ~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~-----D~fi~~~a~~iL 92 (249)
++...+..-+...+.-|.+. ..+..+-.|--+..++++|+.++.-|..... -.-.++ ++=++.-+.+.+
T Consensus 111 iLrtsps~ra~~iiekL~~~-~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~G-----L~~Li~vi~~~~gN~q~Y~L~AL 184 (339)
T 3dad_A 111 ILRTQLSVRVNAILEKLYSS-SGPELRRSLFSLKQIFQEDKDLVPEFVHSEG-----LSCLIRVGAAADHNYQSYILRAL 184 (339)
T ss_dssp EEEECHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTH-----HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHhhcchHHHHHHHHhcc-----HHHHHHHHHhcChHHHHHHHHHH
Confidence 44445556777777777753 3455777788889999999999999997311 112222 555555555556
Q ss_pred HHHHhhhcCCCchhhhhhhh--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhH----HHhhc-------cc
Q 047448 93 ASIVRYLKHDPFAQRCNSLE--VGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRS----SFVQA-------DG 159 (249)
Q Consensus 93 t~Li~~~~~~~~~~~~~~~~--~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~----~fw~~-------~g 159 (249)
..|+.. ..-+ ++.. +.|+.|+ -+++.+ .+..++=++|.-|+..=+|.. .+++. .|
T Consensus 185 ~~LM~~---v~Gm---~gvvs~~~fI~~l-yslv~s-----~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~ 252 (339)
T 3dad_A 185 GQLMLF---VDGM---LGVVAHSDTIQWL-YTLCAS-----LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTG 252 (339)
T ss_dssp HHHTTS---HHHH---HHHHHCHHHHHHH-HHGGGC-----SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHhc---cccc---cchhCCHHHHHHH-HHHHcC-----ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccC
Confidence 666554 1112 2444 7799999 877764 334446666666655444432 33332 23
Q ss_pred ---ccchHhhhcccc-ccchhhhHHHHHHHHHHhchhhhhhHhccchh---HH---HhhhchHHHHHhhccCC--Chhhh
Q 047448 160 ---VKLLTPLISPAS-TQQSIQLAGAMLALAVACFDLSQFIQYHPAGR---VI---VTDLKAKERVMKLMNHE--NTEVT 227 (249)
Q Consensus 160 ---v~~L~~iL~~~~-~~~~~Qllp~M~~lava~~dig~~v~~~p~g~---~~---~~~l~~k~~vm~l~~~~--d~~v~ 227 (249)
++.|+.+|..+. ..... ++-|++. |-......|..+ .+ +++.|....|.++|+.. |++.+
T Consensus 253 ~~p~~~Lv~~L~~~~~~D~el------q~~amtL--IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~ 324 (339)
T 3dad_A 253 APPWANLVSILEEKNGADPEL------LVYTVTL--INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLR 324 (339)
T ss_dssp CCTTHHHHHHHTTTTSCCHHH------HHHHHHH--HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHH
T ss_pred CCcHHHHHHHHhccCCCCHHH------HHHHHHH--HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHH
Confidence 667777775321 11111 2223333 334444556544 33 56778888899999887 87877
Q ss_pred HH
Q 047448 228 KS 229 (249)
Q Consensus 228 ~~ 229 (249)
.+
T Consensus 325 ~Q 326 (339)
T 3dad_A 325 TQ 326 (339)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.87 E-value=21 Score=28.27 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcChHHHHHHHhccCCCCcccccccChHHHHHHHHHHHHHHHhhhcCC
Q 047448 23 GPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANPKRARLFHDKSLASEDTYEPFLSNWFIQEKSCKILASIVRYLKHD 102 (249)
Q Consensus 23 ~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p~rv~~F~~~~~~~~~py~pfL~D~fi~~~a~~iLt~Li~~~~~~ 102 (249)
.+..+..++.+|++ ...++....+..+..+ .+++.++.+.+.-.++ |..++..|...|+.+-.
T Consensus 17 ~~~~~~~L~~~L~~-~~~~vR~~A~~~L~~~--~~~~~~~~L~~~l~~~---------~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQD-DSYYVRRAAAYALGKI--GDERAVEPLIKALKDE---------DAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHH--CCGGGHHHHHHHTTCS---------CHHHHHHHHHHHHHHCC-----
T ss_pred CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHh--CCccHHHHHHHHHcCC---------CHHHHHHHHHHHHhhCC-----
Confidence 35667777788764 3344545555555553 2344555444421111 56888888888776621
Q ss_pred CchhhhhhhhHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHH
Q 047448 103 PFAQRCNSLEVGIFCYIQLLILKKPSHPSRGV-PVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGA 181 (249)
Q Consensus 103 ~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i-~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~ 181 (249)
++..+.+...| ..+ +..+ ..++.+|..+- ..+.++.|...++....
T Consensus 80 ------~~~~~~L~~~l-----~~~---~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~--------- 126 (211)
T 3ltm_A 80 ------ERAVEPLIKAL-----KDE---DGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDW--------- 126 (211)
T ss_dssp ------GGGHHHHHHHT-----TCS---SHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSH---------
T ss_pred ------HHHHHHHHHHH-----cCC---CHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCH---------
Confidence 12334444444 332 2222 22444444431 23457888888854433
Q ss_pred HHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 182 MLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 182 M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
.+-.-|+.=+|.+- .| .+-..+.++++++|+.||..|..++.++-
T Consensus 127 -~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 127 -FVRIAAAFALGEIG--DE---------RAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp -HHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 22233444455441 11 35667888999999999999999998874
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.47 E-value=20 Score=28.07 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhccchhhHHHhhccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGV-PVAINCLAALLKEPMVRSSFVQADG 159 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i-~~~v~~Lq~LLr~~~yR~~fw~~~g 159 (249)
|+.++..|...|+.+-. ++..+.+...| ..+ +..+ ..++.+|..+- ..+.
T Consensus 58 ~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l-----~d~---~~~vr~~a~~aL~~~~----------~~~~ 108 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGD-----------ERAVEPLIKAL-----KDE---DGWVRQSAAVALGQIG----------DERA 108 (201)
T ss_dssp SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-----TCS---SHHHHHHHHHHHHHHC----------CGGG
T ss_pred CHHHHHHHHHHHHhhCC-----------HHHHHHHHHHH-----cCC---CHHHHHHHHHHHHHhC----------cHHH
Confidence 56788888877776521 12234443433 332 2222 22444544431 1245
Q ss_pred ccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 160 VKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 160 v~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
++.|...++.... .+-.-|+.=+|.+-. -++-..+.+++.++|++||..|..++.++
T Consensus 109 ~~~L~~~l~d~~~----------~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 109 VEPLIKALKDEDW----------FVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHTTCSSH----------HHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH----------HHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 7778888754432 222334444555421 13556788999999999999999999887
No 61
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=78.25 E-value=50 Score=31.77 Aligned_cols=94 Identities=9% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHH--hcChHHH---------HHHHhccCCCC-cccccccC------hHHHHHHH
Q 047448 27 VRVFVSILRDIYKEETVEYVLALIDEML--TANPKRA---------RLFHDKSLASE-DTYEPFLS------NWFIQEKS 88 (249)
Q Consensus 27 ~~~fv~LL~~~sk~dtvqyvL~LidDlL--~e~p~rv---------~~F~~~~~~~~-~py~pfL~------D~fi~~~a 88 (249)
..+=++.|.++...+.++++..-|-..| .+....+ ++|...++..+ ..|-+-+. |..+...|
T Consensus 128 r~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a 207 (621)
T 2vgl_A 128 MGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAA 207 (621)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHH
Confidence 3444677888877889999998888888 4332222 23333333111 12322222 77888888
Q ss_pred HHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcC
Q 047448 89 CKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKK 126 (249)
Q Consensus 89 ~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~ 126 (249)
...+..+... +|+.- ....+.+++.| ++.+..
T Consensus 208 ~~~l~~i~~~---~~~~~--~~~~~~~~~~L-~~ll~~ 239 (621)
T 2vgl_A 208 TSLITTLAQK---NPEEF--KTSVSLAVSRL-SRIVTS 239 (621)
T ss_dssp HHHHHHHHHH---CHHHH--TTHHHHHHHHH-HHHHHC
T ss_pred HHHHHHHHHh---ChHHH--HHHHHHHHHHH-HHHHhC
Confidence 8888887765 43221 13447788888 776643
No 62
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=77.99 E-value=18 Score=31.69 Aligned_cols=147 Identities=10% Similarity=0.092 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH---hccchhhHHHhhccc-c
Q 047448 85 QEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAAL---LKEPMVRSSFVQADG-V 160 (249)
Q Consensus 85 ~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~L---Lr~~~yR~~fw~~~g-v 160 (249)
...+.-.|...++. .++.. ...+.-++.|+ +-.+- ++|..-...|...|..+ |+..+||...-.... +
T Consensus 63 ~~~ale~L~~~l~~---~~~~~--~~~lDll~kw~-~lr~~--d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~l 134 (266)
T 2of3_A 63 HLAALDSLVRLADT---SPRSL--LSNSDLLLKWC-TLRFF--ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFV 134 (266)
T ss_dssp HHHHHHHHHHHHHH---CHHHH--HHTHHHHHHHH-HHHTT--SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhh---ChHHH--HHHHHHHHHHH-HHHHh--CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34455555555554 32110 12225579998 64443 23444444455555554 355566655444322 5
Q ss_pred cchHhhhcccc---ccchhhhH-------HH----------H-----HHHHHHhchhhhhhHhccchhHHHhhhchHHHH
Q 047448 161 KLLTPLISPAS---TQQSIQLA-------GA----------M-----LALAVACFDLSQFIQYHPAGRVIVTDLKAKERV 215 (249)
Q Consensus 161 ~~L~~iL~~~~---~~~~~Qll-------p~----------M-----~~lava~~dig~~v~~~p~g~~~~~~l~~k~~v 215 (249)
|.|+.=+-.+- ...--+++ |. + .+-+=.|+=++..+..|.-.. ..-+....-|
T Consensus 135 P~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~i 212 (266)
T 2of3_A 135 PYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTV 212 (266)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHH
Confidence 55554442111 00111111 11 1 555555666777777664331 1112223779
Q ss_pred HhhccCCChhhhHHHHHHHHHHhchh
Q 047448 216 MKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 216 m~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
+++++++|++||-.|+.|+=.+.-+.
T Consensus 213 a~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 213 APFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987665443
No 63
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=77.96 E-value=36 Score=29.98 Aligned_cols=184 Identities=15% Similarity=0.152 Sum_probs=103.0
Q ss_pred hhhhcchhHHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCh--HHHHHHHhccCCCCccccccc---C--hHHHHHHHHH
Q 047448 18 LLDDDGPSYVRVFVSILRDIYKEETVEYVLALIDEMLTANP--KRARLFHDKSLASEDTYEPFL---S--NWFIQEKSCK 90 (249)
Q Consensus 18 ~l~~~~~~y~~~fv~LL~~~sk~dtvqyvL~LidDlL~e~p--~rv~~F~~~~~~~~~py~pfL---~--D~fi~~~a~~ 90 (249)
..+.+. .+..++++||.. ....++-..|..+.+|+..-| .+.+..-+ .+.-++ + |+=|.+.|.+
T Consensus 27 la~~~e-~~l~~L~~LL~d-kD~~vk~raL~~LeellK~~~~~l~~~~~e~-------~Ld~iI~llk~~dEkval~A~r 97 (265)
T 3b2a_A 27 LALEDK-RALFLILELAGE-DDETTRLRAFVALGEILKRADSDLRMMVLER-------HLDVFINALSQENEKVTIKALR 97 (265)
T ss_dssp HHHHCH-HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-------HHHHHHHTCCSTTHHHHHHHHH
T ss_pred HHHhch-hHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccccccHHHHHH-------HHHHHHHHHhccchhHHHHHHH
Confidence 344444 488888888843 233455678889999998843 22222222 111122 2 8899999999
Q ss_pred HHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHhccch-hhHHHhhcccccchHhhhc
Q 047448 91 ILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVP-VAINCLAALLKEPM-VRSSFVQADGVKLLTPLIS 168 (249)
Q Consensus 91 iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~-~~v~~Lq~LLr~~~-yR~~fw~~~gv~~L~~iL~ 168 (249)
++-.|+.. .| +. ++......+-| .+..+++ +.-.+ -++..|.-+ ++-. +|.+ +..|+.++.
T Consensus 98 ~L~~LLe~---vp-L~--~~~y~Kl~~aL-~dlik~~---~~il~~eaae~Lgkl-kv~~~~~~V------~~~l~sLl~ 160 (265)
T 3b2a_A 98 ALGYLVKD---VP-MG--SKTFLKAAKTL-VSLLESP---DDMMRIETIDVLSKL-QPLEDSKLV------RTYINELVV 160 (265)
T ss_dssp HHHHHHTT---CC-BC--HHHHHHHHHHH-HHHTTSC---CHHHHHHHHHHHHHC-CBSCCCHHH------HHHHHHHHT
T ss_pred HHHHHHcC---CC-CC--HHHHHHHHHHH-HHHhcCC---CchHHHHHHHHhCcC-CcccchHHH------HHHHHHHHh
Confidence 99999997 33 21 34456677777 7776653 21111 133444444 2221 2221 455666662
Q ss_pred cccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 169 PASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 169 ~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
+.+.+.| +.|.-=+.+.. .+.+-+.+++. .=.-|=++++|+||.++.-||-++-.++.-
T Consensus 161 --Skd~~vK--------~agl~~L~eia-~~S~D~~i~~~--I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 161 --SPDLYTK--------VAGFCLFLNML-NSSADSGHLTL--ILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp --CSSHHHH--------HHHHHHHHHHG-GGCSSCCCGGG--TTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred --CCChhHH--------HHHHHHHHHhh-cccCCHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2222222 22221122221 23333344443 223466899999999999999999888753
No 64
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=77.74 E-value=0.99 Score=33.01 Aligned_cols=34 Identities=21% Similarity=0.529 Sum_probs=27.2
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHhhccCC
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 222 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~l~~~~ 222 (249)
.+|+..|+..||.|..++....|| +..+.-..|+
T Consensus 31 VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 66 (88)
T 2ibj_A 31 VYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66 (88)
T ss_dssp EEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCC
T ss_pred EEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCC
Confidence 689999999999999998887777 4555544565
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=76.51 E-value=14 Score=35.59 Aligned_cols=133 Identities=14% Similarity=0.168 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccch--hhHHHhhcccc
Q 047448 83 FIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPM--VRSSFVQADGV 160 (249)
Q Consensus 83 fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~--yR~~fw~~~gv 160 (249)
-++..|...+..|+... + +...+.++..+ ...+.++ +-+.-..++.+|..+..... .-..+. .+.+
T Consensus 343 ~~r~~a~~~l~~l~~~~---~-----~~~~~~~l~~l-~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l 410 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCC---E-----DDIVPHVLPFI-KEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAM 410 (876)
T ss_dssp CHHHHHHHHHHHHHHHH---G-----GGGHHHHHHHH-HHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHC---c-----HhhHHHHHHHH-HHHccCC--ChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 44445555555554441 1 12235566666 5555442 22233447777777765432 111111 2336
Q ss_pred cchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccch---hHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 161 KLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAG---RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 161 ~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g---~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
+.|+..+..... .+-.-||.=+|.|+++.|.. ...++. .=..+++.|.++ ++||..|..|+..+
T Consensus 411 ~~l~~~l~d~~~----------~vr~~a~~~l~~~~~~~~~~~~~~~~l~~--~l~~l~~~l~~~-~~v~~~a~~al~~l 477 (876)
T 1qgr_A 411 PTLIELMKDPSV----------VVRDTAAWTVGRICELLPEAAINDVYLAP--LLQCLIEGLSAE-PRVASNVCWAFSSL 477 (876)
T ss_dssp HHHHHHHTCSSH----------HHHHHHHHHHHHHHHHCGGGTSSTTTHHH--HHHHHHHHTTSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCH----------HHHHHHHHHHHHHHHhCchhcccHHHHHH--HHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 666666643322 34456777788888887652 222322 234567778775 99999999999998
Q ss_pred hch
Q 047448 238 FLG 240 (249)
Q Consensus 238 ~~~ 240 (249)
...
T Consensus 478 ~~~ 480 (876)
T 1qgr_A 478 AEA 480 (876)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=74.95 E-value=8.6 Score=39.54 Aligned_cols=136 Identities=12% Similarity=0.052 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhccch-------hhH
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGV-PVAINCLAALLKEPM-------VRS 152 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i-~~~v~~Lq~LLr~~~-------yR~ 152 (249)
++.++..|+..|+.++.. -+ ++..+.++..| ...+..++ ..+ ..+.++|..+...=. +..
T Consensus 61 ~~~vR~~A~~~L~~l~~~---~~-----~~~~~~i~~~L-l~~l~d~~---~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 61 NGEVQNLAVKCLGPLVSK---VK-----EYQVETIVDTL-CTNMLSDK---EQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp SHHHHHHHHHHHHHHHTT---SC-----HHHHHHHHHHH-HHHTTCSS---SHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred CHHHHHHHHHHHHHHHHh---CC-----HHHHHHHHHHH-HHHhcCCc---HHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 789999999999998865 21 22346666777 66555432 223 347777777764322 122
Q ss_pred HHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhH-HHhhhchHHHHHhhccCCChhhhHHHH
Q 047448 153 SFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRV-IVTDLKAKERVMKLMNHENTEVTKSAL 231 (249)
Q Consensus 153 ~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~-~~~~l~~k~~vm~l~~~~d~~v~~~al 231 (249)
.+|. +-++.|+..+....+ . .+..-|+.=++++++..|..-. .++. .-..++..+.|+++.||..|+
T Consensus 129 ~~~~-~llp~L~~~l~~~~~-~--------~~~~~al~~l~~~~~~~~~~l~~~~~~--ll~~l~~~L~~~~~~vR~~a~ 196 (1230)
T 1u6g_C 129 NVCK-KITGRLTSAIAKQED-V--------SVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQLTSPRLAVRKRTI 196 (1230)
T ss_dssp HHHH-HHHHHHHHHHSCCSC-H--------HHHHHHHHHHHHHHHHTCSSCTTTHHH--HHHHHGGGGGCSSHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHcCCCc-h--------HHHHHHHHHHHHHHHHhHhHHHHHHHH--HHHHHHHHHcCCcHHHHHHHH
Confidence 3443 457777777753111 1 1223333335555554432100 1111 345577889999999999999
Q ss_pred HHHHHHhch
Q 047448 232 LCIQRLFLG 240 (249)
Q Consensus 232 ~~~q~~~~~ 240 (249)
.|+..+...
T Consensus 197 ~al~~l~~~ 205 (1230)
T 1u6g_C 197 IALGHLVMS 205 (1230)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
Confidence 999988754
No 67
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=74.57 E-value=1.1 Score=33.25 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=27.7
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHhhccCC
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 222 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~l~~~~ 222 (249)
.+|+..|+..||.|..++....|| +..+.-..|+
T Consensus 29 VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 64 (93)
T 1cyo_A 29 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64 (93)
T ss_dssp EEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCC
T ss_pred EEECCCcchhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 589999999999999998888887 5556555565
No 68
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=73.72 E-value=1.4 Score=32.75 Aligned_cols=34 Identities=18% Similarity=0.504 Sum_probs=27.5
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHhhccCC
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 222 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~l~~~~ 222 (249)
.+|+..|+..||.|..++....|| +..+.-..|+
T Consensus 34 VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs 69 (92)
T 3ner_A 34 VYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHS 69 (92)
T ss_dssp EEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCC
T ss_pred EEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCC
Confidence 589999999999999998888877 5556555565
No 69
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=71.90 E-value=0.91 Score=33.43 Aligned_cols=34 Identities=15% Similarity=0.445 Sum_probs=26.2
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHhhccCC
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 222 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~l~~~~ 222 (249)
.+|+..|+..||.|..++....|| +..++-..|+
T Consensus 30 VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~ 65 (88)
T 3lf5_A 30 VYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRW 65 (88)
T ss_dssp EEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHTT
T ss_pred EEECccchhhCcChhhhhhhcCCCcchHHHHHHCCc
Confidence 489999999999999988888776 3455555443
No 70
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=71.89 E-value=0.8 Score=33.74 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=24.6
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHh
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMK 217 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~ 217 (249)
.+|+..|++.||.|..++....|| +..+.
T Consensus 32 VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~ 62 (90)
T 1cxy_A 32 VYDLTPYVPNHPGPAGMMLVWCGQESTEAWE 62 (90)
T ss_dssp EEECTTTGGGCCSSTTTTGGGTTSBCHHHHH
T ss_pred EEECccchhhCcChHHHHHHHCCcchhHHHh
Confidence 589999999999999998888887 45555
No 71
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=71.46 E-value=1.1 Score=34.00 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=27.5
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHhhccCC
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 222 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~l~~~~ 222 (249)
.+|+..|+..||.|..++....|| +..+.-..|+
T Consensus 33 VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs 68 (104)
T 1hko_A 33 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68 (104)
T ss_dssp EEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCC
T ss_pred EEECCcchhhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 589999999999999999888887 4555544565
No 72
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=71.41 E-value=37 Score=32.73 Aligned_cols=56 Identities=7% Similarity=-0.037 Sum_probs=38.9
Q ss_pred HHHHHHhchhhhhhHhccchhHH--HhhhchHHHHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 183 LALAVACFDLSQFIQYHPAGRVI--VTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~--~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
..+.+|++=||||..+.++...+ .+.+ ..+..-...+++.||.++|.|.=|+....
T Consensus 495 ~li~~~~wilGEy~~~~~~~~~~~p~~~l---~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 495 NLVKVGGYILGEFGNLIAGDPRSSPLIQF---NLLHSKFHLCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp HHHHHHHHHHHHHTHHHHSSTTSCHHHHH---HHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcchHHHhcccCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence 45678889999999887764311 1111 12344556889999999999999987644
No 73
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=70.45 E-value=19 Score=36.88 Aligned_cols=137 Identities=15% Similarity=0.105 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHhccchhhHHHhhccc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVP-VAINCLAALLKEPMVRSSFVQADG 159 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~-~~v~~Lq~LLr~~~yR~~fw~~~g 159 (249)
++-++..|..+++.++.... ... ....+.++..+ ...+..+ ...+. .+++++..+...-.- .|. ..-
T Consensus 147 ~~~~~~~al~~l~~~~~~~~--~~l---~~~~~~ll~~l-~~~L~~~---~~~vR~~a~~al~~l~~~~~~--~~~-~~~ 214 (1230)
T 1u6g_C 147 DVSVQLEALDIMADMLSRQG--GLL---VNFHPSILTCL-LPQLTSP---RLAVRKRTIIALGHLVMSCGN--IVF-VDL 214 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTC--SSC---TTTHHHHHHHH-GGGGGCS---SHHHHHHHHHHHHHHTTTC------C-TTH
T ss_pred chHHHHHHHHHHHHHHHHhH--hHH---HHHHHHHHHHH-HHHHcCC---cHHHHHHHHHHHHHHHHhcCH--HHH-HHH
Confidence 35667777777777765411 111 12224445555 4444432 11222 256677766654321 110 112
Q ss_pred ccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhc-hHHHHHhhccCCChhhhHHHHHHHHHHh
Q 047448 160 VKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLK-AKERVMKLMNHENTEVTKSALLCIQRLF 238 (249)
Q Consensus 160 v~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~-~k~~vm~l~~~~d~~v~~~al~~~q~~~ 238 (249)
++.|++.|...... .+..-||.=+|.+++..|. .+...+. .-..+++.++++|++||..|+.+...|.
T Consensus 215 l~~l~~~L~~~~~~---------~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 215 IEHLLSELSKNDSM---------STTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFV 283 (1230)
T ss_dssp HHHHHHHHHHTCSS---------CSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCch---------hHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 55555555332110 0001245556777776653 2222222 5667778889999999999999998887
Q ss_pred ch
Q 047448 239 LG 240 (249)
Q Consensus 239 ~~ 240 (249)
..
T Consensus 284 ~~ 285 (1230)
T 1u6g_C 284 RR 285 (1230)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 74
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=69.63 E-value=1.5 Score=31.68 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=20.4
Q ss_pred hchhhhhhHhccchhHHHhhhchHH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKE 213 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~ 213 (249)
.+|+..|+..||.| .++....||.
T Consensus 28 VYDvT~f~~~HPGG-~~i~~~aG~D 51 (82)
T 1x3x_A 28 VHDMTSFYKEHPGG-KVILNKAGQD 51 (82)
T ss_dssp EEECGGGGGGCTTG-GGGGGGTTSB
T ss_pred EEECCcchhhCcCh-hhhhhhCCCC
Confidence 58999999999999 7777777763
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=69.42 E-value=36 Score=28.66 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhh-hhhHHHHHHHHHHHhcCCCCCCCCh-HHHHHHHHHHhccc-hhhHHH-h-
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCN-SLEVGIFCYIQLLILKKPSHPSRGV-PVAINCLAALLKEP-MVRSSF-V- 155 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~-~~~~~~l~wL~~~~l~~~~~~~~~i-~~~v~~Lq~LLr~~-~yR~~f-w- 155 (249)
+..++..|+++|+.|+..-. .+.. + .....++.-+ -+.++. ....| ..+..+|..+...- . ... .
T Consensus 74 n~~v~~~A~~al~~la~~l~-~~~f---~~~y~~~llp~l-l~~l~d---kk~~V~~aa~~al~~i~~~~~~--~~~~~~ 143 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLK-TPGF---SKDYVSLVFTPL-LDRTKE---KKPSVIEAIRKALLTICKYYDP--LASSGR 143 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-TTTS---CHHHHHHHHHHH-HHGGGC---CCHHHHHHHHHHHHHHHHHSCT--TCTTCT
T ss_pred CHHHHHHHHHHHHHHHHhcc-cccc---cHHHHHHHHHHH-HHHHcC---CCHHHHHHHHHHHHHHHHHccc--cccCCc
Confidence 55788999999999986532 0222 2 2223333333 333322 11222 23444555555421 1 000 0
Q ss_pred hcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccch-hHHHhhh--chHHHHHhhccCCChhhhHHHHH
Q 047448 156 QADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAG-RVIVTDL--KAKERVMKLMNHENTEVTKSALL 232 (249)
Q Consensus 156 ~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g-~~~~~~l--~~k~~vm~l~~~~d~~v~~~al~ 232 (249)
-..-++.|+..++.+..++. .=++.=|+.+++..+.. ..+...+ ..-..++++|++++++||..|..
T Consensus 144 l~~ll~~l~~~l~~k~~~vk----------~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~ 213 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIR----------MECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFE 213 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHH----------HHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHH----------HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 00124455555554422221 12333377777777653 3333334 25677899999999999999998
Q ss_pred HHHHHh
Q 047448 233 CIQRLF 238 (249)
Q Consensus 233 ~~q~~~ 238 (249)
|+-.++
T Consensus 214 ~l~~i~ 219 (249)
T 2qk1_A 214 SFAILI 219 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888876
No 76
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=68.49 E-value=2.7 Score=33.09 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=39.3
Q ss_pred HHHHHHhchhhhhhHhccchhHHHhhhc-----hHHHHHhhccCCChhhhHHHH
Q 047448 183 LALAVACFDLSQFIQYHPAGRVIVTDLK-----AKERVMKLMNHENTEVTKSAL 231 (249)
Q Consensus 183 ~~lava~~dig~~v~~~p~g~~~~~~l~-----~k~~vm~l~~~~d~~v~~~al 231 (249)
+.-|+--.|.+.|-|+|-.=-.+...|. +..-.+.|++|+|+.||..|=
T Consensus 25 q~eA~~~~d~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA 78 (123)
T 2i9c_A 25 QDDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAA 78 (123)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHH
Confidence 5568888999999999976666666654 455699999999999998763
No 77
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=68.30 E-value=53 Score=27.59 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhh-hhhhhHHHHHHHHHHH-hcCCCCCCCChHHHHHHHHHHhccchhhHHHhhcc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQR-CNSLEVGIFCYIQLLI-LKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQAD 158 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~-~~~~~~~~l~wL~~~~-l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~~~ 158 (249)
+--++..++.++..++........... .......++..| ..- +.++ ...-...++.++..+......-..+
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-veK~l~~~--k~~~~~~a~~~l~~~~~~~~~~~~~---- 140 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL-VEKGLTSS--RATTKTQSMSCILSLCGLDTSITQS---- 140 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH-HHHTSSCC--CHHHHHHHHHHHHHHHHTSSSSHHH----
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH-HHHHhcCc--cHHHHHHHHHHHHHHHHhcCcHHHH----
Confidence 668889999999998875321110100 001123444444 221 2221 2222233555555543222111111
Q ss_pred cccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccch----hHHHhhhchHHHHHhhccCCChhhhHHHHHHH
Q 047448 159 GVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAG----RVIVTDLKAKERVMKLMNHENTEVTKSALLCI 234 (249)
Q Consensus 159 gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g----~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~ 234 (249)
+..+...+..+.. .+.+=++.=|++.++.|... +..+.. ....+..+++|.|++||..|..++
T Consensus 141 -~e~l~~~l~~Knp----------kv~~~~l~~l~~~l~~fg~~~~~~k~~l~~--i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 141 -VELVIPFFEKKLP----------KLIAAAANCVYELMAAFGLTNVNVQTFLPE--LLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp -HHHHGGGGGCSCH----------HHHHHHHHHHHHHHHHHTTTTCCHHHHHHH--HGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred -HHHHHHHHhccCH----------HHHHHHHHHHHHHHHHhCCCcCCchhHHHH--HHHHHHHHHhCCcHHHHHHHHHHH
Confidence 2233333332222 33344455577777765321 111211 223456789999999999999998
Q ss_pred HHHhc
Q 047448 235 QRLFL 239 (249)
Q Consensus 235 q~~~~ 239 (249)
-.++.
T Consensus 208 ~~ly~ 212 (278)
T 4ffb_C 208 VEIYK 212 (278)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77763
No 78
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=65.39 E-value=1.4 Score=34.08 Aligned_cols=35 Identities=9% Similarity=0.171 Sum_probs=26.8
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHhhccCCC
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHEN 223 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~l~~~~d 223 (249)
.+|+..|++.||.|..++....|| +..+.-..|+.
T Consensus 48 VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~ 84 (112)
T 2keo_A 48 VYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFE 84 (112)
T ss_dssp EEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHST
T ss_pred EEECCcchhhCCCchhhhhhhCCccchHHHhHcCCCH
Confidence 699999999999999988888887 34444433543
No 79
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=60.62 E-value=2.3 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=18.1
Q ss_pred hchhhhhhHhccchh-HHHhhhchHH
Q 047448 189 CFDLSQFIQYHPAGR-VIVTDLKAKE 213 (249)
Q Consensus 189 ~~dig~~v~~~p~g~-~~~~~l~~k~ 213 (249)
.+|+..|+..||.|. .|+.. .||.
T Consensus 30 VYDvt~f~~~HPGG~~~il~~-aG~D 54 (82)
T 1mj4_A 30 VFDVTEFVDLHPGGPSKLMLA-AGGP 54 (82)
T ss_dssp EEECTTTGGGSTTCHHHHHTT-TTSB
T ss_pred EEEchHHHHhCCCHhHHHHHH-cCCC
Confidence 589999999999995 45544 4453
No 80
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=59.78 E-value=62 Score=30.99 Aligned_cols=134 Identities=8% Similarity=0.087 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhh--ccc
Q 047448 82 WFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQ--ADG 159 (249)
Q Consensus 82 ~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~--~~g 159 (249)
+-++..+...|..|... .+ +...+.++..+ ...+.++ +-+.-..++.++..+.....- ..+-. ..-
T Consensus 345 ~~~r~~a~~~L~~l~~~---~~-----~~~~~~l~~~l-~~~l~~~--~~~~r~~a~~~l~~i~~~~~~-~~~~~~l~~i 412 (861)
T 2bpt_A 345 WNVSMSAGACLQLFAQN---CG-----NHILEPVLEFV-EQNITAD--NWRNREAAVMAFGSIMDGPDK-VQRTYYVHQA 412 (861)
T ss_dssp CHHHHHHHHHHHHHHHH---HG-----GGGHHHHHHHH-HHHTTCS--SHHHHHHHHHHHHHTSSSSCH-HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH---cc-----HhHHHHHHHHH-HHHcCCC--ChhHHHHHHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 34556666666666654 11 12346666777 6666543 223334588888888865321 11111 123
Q ss_pred ccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccc---hhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHH
Q 047448 160 VKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPA---GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQR 236 (249)
Q Consensus 160 v~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~---g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~ 236 (249)
++.|++.+..... .+-.-+|.=+|.++++.+. +...++. .=..+++.+.++ ++||..|..|+..
T Consensus 413 l~~l~~~l~d~~~----------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~--~l~~l~~~l~~~-~~v~~~a~~al~~ 479 (861)
T 2bpt_A 413 LPSILNLMNDQSL----------QVKETTAWCIGRIADSVAESIDPQQHLPG--VVQACLIGLQDH-PKVATNCSWTIIN 479 (861)
T ss_dssp HHHHHHGGGCSCH----------HHHHHHHHHHHHHHHHHGGGSCTTTTHHH--HHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcH----------HHHHHHHHHHHHHHHHhhhhcCCHHHHHH--HHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 5555555543221 3334456667777776543 1223333 233456677665 9999999999988
Q ss_pred Hhch
Q 047448 237 LFLG 240 (249)
Q Consensus 237 ~~~~ 240 (249)
+...
T Consensus 480 l~~~ 483 (861)
T 2bpt_A 480 LVEQ 483 (861)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 81
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=55.25 E-value=34 Score=31.21 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHh-ccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchh-HHHh
Q 047448 130 PSRGVPVAINCLAALL-KEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGR-VIVT 207 (249)
Q Consensus 130 ~~~~i~~~v~~Lq~LL-r~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~-~~~~ 207 (249)
+.+....++..|+.++ ..+.|=.-|.+.+|+..|+.++..+.++ +++=+.-=++++.- |..|- .|+.
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN----------~q~Y~L~AL~~LM~-~v~Gm~gvvs 199 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHN----------YQSYILRALGQLML-FVDGMLGVVA 199 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHH----------HHHHHHHHHHHHTT-SHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChH----------HHHHHHHHHHHHHh-ccccccchhC
Confidence 3445566888888855 6799999999999999999999776432 22333333555554 44555 5555
Q ss_pred hhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 208 DLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 208 ~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
.-..-.+|..+.+..++.|-+.||.-+=.++..
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence 555677888999999999999998776665544
No 82
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=52.55 E-value=1.2e+02 Score=26.40 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=36.7
Q ss_pred HhchhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 188 ACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 188 a~~dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
|+.=++.+++.+| +.++.. .-..+.+.+++++..+|+.|+.|+..+...
T Consensus 348 a~~~L~~l~~~~~--~~~~~~--~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 348 AGVCLMLLATCCE--DDIVPH--VLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HHHHHHHHHHHTT--TTHHHH--HHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHhcc--HHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 4444666777766 355553 446778899999999999999999998753
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=51.36 E-value=24 Score=32.08 Aligned_cols=54 Identities=6% Similarity=-0.169 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc
Q 047448 81 NWFIQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLK 146 (249)
Q Consensus 81 D~fi~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr 146 (249)
+.||+-.|.-....|... .| +....|++-+ .+.+...++.-++ .|+.+|.++-.
T Consensus 152 ~pyVRk~A~l~~~kL~~~---~p------e~v~~~~~~l-~~ll~d~n~~V~~--~Al~lL~ei~~ 205 (355)
T 3tjz_B 152 VPSVSSSALVSSLHLLKC---SF------DVVKRWVNEA-QEAASSDNIMVQY--HALGLLYHVRK 205 (355)
T ss_dssp SHHHHHHHHHHHHHHTTT---CH------HHHHTTHHHH-HHHTTCSSHHHHH--HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcc---CH------HHHHHHHHHH-HHHhcCCCccHHH--HHHHHHHHHHh
Confidence 788888888888887665 43 3346677777 7776542211121 25555555544
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=50.76 E-value=9.2 Score=28.53 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHhhccCCChhhhHHHHHHHHHH
Q 047448 213 ERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 213 ~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
..+.+++.++|+.||..|..++.++
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~ 69 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNF 69 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 3445555566666666665555443
No 85
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=50.11 E-value=34 Score=26.05 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=38.7
Q ss_pred cchhHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHhcC---hHHHHHHHhccCCCCccc-ccccC
Q 047448 22 DGPSYVRVFVSILRDIY--KEETVEYVLALIDEMLTAN---PKRARLFHDKSLASEDTY-EPFLS 80 (249)
Q Consensus 22 ~~~~y~~~fv~LL~~~s--k~dtvqyvL~LidDlL~e~---p~rv~~F~~~~~~~~~py-~pfL~ 80 (249)
+..+|.+.+-.|++=.+ ..|+.+.|=+||-+++... +++..-+.+.-..+..|| -|||+
T Consensus 5 ~v~Kck~FL~tLi~la~~~~pev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~pqP~lvPFLK 69 (105)
T 2h7b_A 5 QLSKLKRFLTTLQQFGNDISPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLK 69 (105)
T ss_dssp GGTHHHHHHHHHHHSHHHHCHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHSSSSCCSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 44456555555554333 3589999999999999655 366666655444555677 78887
No 86
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=47.88 E-value=10 Score=28.21 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=17.0
Q ss_pred HHHHHhhccCCChhhhHHHHHHHHHH
Q 047448 212 KERVMKLMNHENTEVTKSALLCIQRL 237 (249)
Q Consensus 212 k~~vm~l~~~~d~~v~~~al~~~q~~ 237 (249)
-..+.+++.++|+.||..|..++.++
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44555666677777777777776654
No 87
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=47.21 E-value=1.8e+02 Score=27.81 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhccchhhHHHhhcccccchHhhhcccc-ccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhh-hc-h
Q 047448 135 PVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPAS-TQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTD-LK-A 211 (249)
Q Consensus 135 ~~~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~-~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~-l~-~ 211 (249)
..+.+++..+.+.... ...| .+-++.|+..+.... +. .+...|+.-++.+++.++ +. .++. +. .
T Consensus 107 ~~~~~~l~~i~~~~~~-~~~w-~~ll~~l~~~l~~~~~~~---------~~r~~al~~l~~l~~~~~-~~-~~~~~~~~l 173 (876)
T 1qgr_A 107 SSASQCVAGIACAEIP-VNQW-PELIPQLVANVTNPNSTE---------HMKESTLEAIGYICQDID-PE-QLQDKSNEI 173 (876)
T ss_dssp CHHHHHHHHHHHHHGG-GTCC-TTHHHHHHHHHHCTTCCH---------HHHHHHHHHHHHHHHHSC-HH-HHGGGHHHH
T ss_pred HHHHHHHHHHHHhhCc-cccc-HHHHHHHHHHHhCCCCCH---------HHHHHHHHHHHHHHHhcC-Hh-hHHhHHHHH
Confidence 6689999999876321 1123 233666666665431 11 222334455666666552 11 1221 11 2
Q ss_pred HHHHHhhccCC--ChhhhHHHHHHHHHHhc
Q 047448 212 KERVMKLMNHE--NTEVTKSALLCIQRLFL 239 (249)
Q Consensus 212 k~~vm~l~~~~--d~~v~~~al~~~q~~~~ 239 (249)
-..+++.+.++ +++||..|+.|+..++.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 34466778887 69999999999998763
No 88
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=44.48 E-value=2.1e+02 Score=27.16 Aligned_cols=136 Identities=11% Similarity=0.082 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhhhhhhhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccchhhHHHhh--ccccc
Q 047448 84 IQEKSCKILASIVRYLKHDPFAQRCNSLEVGIFCYIQLLILKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQ--ADGVK 161 (249)
Q Consensus 84 i~~~a~~iLt~Li~~~~~~~~~~~~~~~~~~~l~wL~~~~l~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw~--~~gv~ 161 (249)
++..++..|+.++..... .. ....+.++.-+ ...++.++.+ .--..++.++..+...-. ..|.. ..-++
T Consensus 572 ~~~~~~~~l~~l~~~~~~--~~---~~~~~~l~~~l-~~~l~~~~~~-~v~~~~~~~l~~l~~~~~--~~~~~~l~~i~~ 642 (861)
T 2bpt_A 572 LQSNILTVLAAVIRKSPS--SV---EPVADMLMGLF-FRLLEKKDSA-FIEDDVFYAISALAASLG--KGFEKYLETFSP 642 (861)
T ss_dssp HHHHHHHHHHHHHHHCGG--GT---GGGHHHHHHHH-HHHHHSTTGG-GTHHHHHHHHHHHHHHHG--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh--hh---HHHHHHHHHHH-HHHHccCCCC-cHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence 445666777777765211 11 11223344444 3334432111 222335556666554322 11222 12255
Q ss_pred chHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccch-hHHHhhhchHHHHHhhccCCC--hhhhHHHHHHHHHHh
Q 047448 162 LLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHEN--TEVTKSALLCIQRLF 238 (249)
Q Consensus 162 ~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g-~~~~~~l~~k~~vm~l~~~~d--~~v~~~al~~~q~~~ 238 (249)
.|+..++..... +...|+.=+|.+++..+.. +..+.. .-..+++.+.+++ ++||..|+.|+..+.
T Consensus 643 ~l~~~l~~~~~~----------vr~~a~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 643 YLLKALNQVDSP----------VSITAVGFIADISNSLEEDFRRYSDA--MMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp HHHHHHHCTTSH----------HHHHHHHHHHHHHHHTGGGGHHHHHH--HHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhccccHH----------HHHHHHHHHHHHHHHhchhccchHHH--HHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 566665322221 1122333355555554321 111222 2334566777765 999999999998887
Q ss_pred ch
Q 047448 239 LG 240 (249)
Q Consensus 239 ~~ 240 (249)
.+
T Consensus 711 ~~ 712 (861)
T 2bpt_A 711 SN 712 (861)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 89
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=41.13 E-value=3.1e+02 Score=28.38 Aligned_cols=28 Identities=11% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHhhccCCChhhhHHHHHHHHHHhchh
Q 047448 214 RVMKLMNHENTEVTKSALLCIQRLFLGA 241 (249)
Q Consensus 214 ~vm~l~~~~d~~v~~~al~~~q~~~~~~ 241 (249)
.+..|++++|+.||..|..|...++...
T Consensus 651 ~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 651 VLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 4456789999999999999999999754
No 90
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=41.09 E-value=13 Score=35.56 Aligned_cols=34 Identities=24% Similarity=0.561 Sum_probs=27.1
Q ss_pred hchhhhhhHhccchhHHHhhhchH--HHHHhhccCCC
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHEN 223 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k--~~vm~l~~~~d 223 (249)
.||+..|+..||.|..++....|| +..+.-. |+.
T Consensus 33 VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~-H~~ 68 (511)
T 1kbi_A 33 VYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP 68 (511)
T ss_dssp EEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGG-SCT
T ss_pred EEECCcchhhCcChHHHHHHHcCcchhhhhhhc-CCH
Confidence 589999999999999998888777 4555555 553
No 91
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=38.62 E-value=4.9 Score=26.98 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcC---CCCCCCChHHHHHHHHHHhccc
Q 047448 113 VGIFCYIQLLILKK---PSHPSRGVPVAINCLAALLKEP 148 (249)
Q Consensus 113 ~~~l~wL~~~~l~~---~~~~~~~i~~~v~~Lq~LLr~~ 148 (249)
-.+++|| +.++.+ +....+.+++|++||++-+.+.
T Consensus 7 ~sIi~FL-~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 7 YAIIQFL-HDQLRHGGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHH-HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHH-HHhcccCCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 5688899 887753 2234467889999999887665
No 92
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=37.31 E-value=40 Score=32.75 Aligned_cols=72 Identities=8% Similarity=0.083 Sum_probs=51.7
Q ss_pred ccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchHH-HHHhhccCCChhhhHHHHHHHHH
Q 047448 158 DGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAKE-RVMKLMNHENTEVTKSALLCIQR 236 (249)
Q Consensus 158 ~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k~-~vm~l~~~~d~~v~~~al~~~q~ 236 (249)
+.+.|+++-|+.... ..-.-||.=|++.+. -|.-++.+.+-|+=. .+-.++.+++.+||-+|.-|..-
T Consensus 34 ~~i~Pll~~L~S~~~----------~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 34 DKILPVLKDLKSPDA----------KSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKV 102 (684)
T ss_dssp HTTHHHHHHHSSSCC----------SHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCCCCH----------HHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346677777765432 222557777899885 788888888877654 45678999999999999988765
Q ss_pred Hhch
Q 047448 237 LFLG 240 (249)
Q Consensus 237 ~~~~ 240 (249)
+-.+
T Consensus 103 L~~~ 106 (684)
T 4gmo_A 103 LAQE 106 (684)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5433
No 93
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=32.91 E-value=18 Score=25.42 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=18.2
Q ss_pred hhhhhHhccchhHHHhhhc
Q 047448 192 LSQFIQYHPAGRVIVTDLK 210 (249)
Q Consensus 192 ig~~v~~~p~g~~~~~~l~ 210 (249)
||+.|+.||+...|+.+.|
T Consensus 11 I~eiv~~~P~~~~vf~~~G 29 (73)
T 2k5e_A 11 FAQALQTHPGVAGVLRSYN 29 (73)
T ss_dssp HHHHHHHCTHHHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 8999999999999999988
No 94
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=32.69 E-value=19 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=18.2
Q ss_pred hhhhhHhccchhHHHhhhc
Q 047448 192 LSQFIQYHPAGRVIVTDLK 210 (249)
Q Consensus 192 ig~~v~~~p~g~~~~~~l~ 210 (249)
||+.++.||+-+.++.++|
T Consensus 15 I~elv~~~P~~~~vl~~~G 33 (81)
T 2fi0_A 15 VAEVVDKHPEVLEILVELG 33 (81)
T ss_dssp HHHHHHHCGGGHHHHTTTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 7899999999999999998
No 95
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=30.31 E-value=1.9e+02 Score=25.40 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhccchhhHHHhhcc--cccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhhhchH
Q 047448 135 PVAINCLAALLKEPMVRSSFVQAD--GVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTDLKAK 212 (249)
Q Consensus 135 ~~~v~~Lq~LLr~~~yR~~fw~~~--gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~l~~k 212 (249)
-+++|++.-++..+.+|..+-... -++.+..++. +.+-++|+ ++|=..+.++-+....+. -...++ +-
T Consensus 166 ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~--~~nknl~i-----A~ATl~~NlAv~~~~~~~-~~~~~~--ll 235 (304)
T 3ebb_A 166 LLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKS--GSNKNIHI-----ALATLALNYSVCFHKDHN-IEGKAQ--CL 235 (304)
T ss_dssp HHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGS--SCCHHHHH-----HHHHHHHHHHHHHHHSCC-HHHHHH--HH
T ss_pred HHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhc--CCChhHHH-----HHHHHHHHHHHHHhhcCC-chHHHH--HH
Confidence 459999999999999999877632 1333333321 12334442 222223333333333221 110111 11
Q ss_pred HHHHhhc-cCCChhhhHHHHHHHHHHhc
Q 047448 213 ERVMKLM-NHENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 213 ~~vm~l~-~~~d~~v~~~al~~~q~~~~ 239 (249)
..+.+.+ ..+|+|..|.+|.|+.-++.
T Consensus 236 ~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 236 SLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 2222222 35699999999999999885
No 96
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=30.31 E-value=1.9e+02 Score=25.37 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=66.1
Q ss_pred HHHHHHHHhccchhhHHHhhcccccchHhhhccccccchhhhHHHHHHHHHHhchhhhhhHhc-cchhHHHhhhchHHHH
Q 047448 137 AINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLAGAMLALAVACFDLSQFIQYH-PAGRVIVTDLKAKERV 215 (249)
Q Consensus 137 ~v~~Lq~LLr~~~yR~~fw~~~gv~~L~~iL~~~~~~~~~Qllp~M~~lava~~dig~~v~~~-p~g~~~~~~l~~k~~v 215 (249)
+..+||.+...|+.|..|.+++---.|.+.|+..+..-.+.-+ .+.+|.| ||..|+-- |+....+=.-..-...
T Consensus 76 aLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~L-RLtsLGV----IgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 76 ALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYL-RLTSLGV----IGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHH-HHHHHHH----HHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhh-hhhHHHH----HHHHhccCcHHHHHHHHhhhHHHHH
Confidence 7788999999999999999999877888888654321000000 0033444 66666642 2222222222344455
Q ss_pred HhhccCCChhhhHHHHHHHHHHhchhh
Q 047448 216 MKLMNHENTEVTKSALLCIQRLFLGAK 242 (249)
Q Consensus 216 m~l~~~~d~~v~~~al~~~q~~~~~~~ 242 (249)
.+.|....+--|-=|..-+||++.+..
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~ 177 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDT 177 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccch
Confidence 667788889999999999999998773
No 97
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=30.00 E-value=12 Score=27.93 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhccchhhHH-Hh--hcccccchHhhhc
Q 047448 113 VGIFCYIQLLILKKPS---HPSRGVPVAINCLAALLKEPMVRSS-FV--QADGVKLLTPLIS 168 (249)
Q Consensus 113 ~~~l~wL~~~~l~~~~---~~~~~i~~~v~~Lq~LLr~~~yR~~-fw--~~~gv~~L~~iL~ 168 (249)
-.+++|| +.+++++. ...+.+++|++||++-+.+..--.. .. ..=|=++|..|++
T Consensus 24 ~sIIdFL-~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~~D~~~~v~~~~~g~q~L~eIf~ 84 (92)
T 4asv_A 24 ALIVNYF-SSIVEKKEISEDGADSLNVAMDCISEAFGFEREAVSGILGKSEFKGQHLADILN 84 (92)
T ss_dssp HHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHSSBTTCCHHHHHH
T ss_pred HHHHHHH-HHhcccCCcCHHHHHHHHHHHHHHHHHhCCCchhhhHHHhhhccCCCCHHHHHH
Confidence 6789999 88876532 2346788999999999988754432 11 1222345555553
No 98
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=27.66 E-value=15 Score=34.88 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=20.5
Q ss_pred hchhhhhhHhccchhHHHhhhchHH
Q 047448 189 CFDLSQFIQYHPAGRVIVTDLKAKE 213 (249)
Q Consensus 189 ~~dig~~v~~~p~g~~~~~~l~~k~ 213 (249)
.||+..|+..||.|..++-...||.
T Consensus 30 VYDvT~fl~~HPGG~~~il~~aG~D 54 (466)
T 1sox_A 30 VFDVTDFVELHPGGPDKILLAAGGA 54 (466)
T ss_dssp EEECTTTTTTSTTCHHHHGGGTTSB
T ss_pred EEechHhHhhCcCCcccchhhcCCc
Confidence 5899999999999976666666665
No 99
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=27.40 E-value=14 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhccch
Q 047448 112 EVGIFCYIQLLILKKPS---HPSRGVPVAINCLAALLKEPM 149 (249)
Q Consensus 112 ~~~~l~wL~~~~l~~~~---~~~~~i~~~v~~Lq~LLr~~~ 149 (249)
.-.+++|| +.++.++. ...+.+++|++|+++-+.+..
T Consensus 11 a~sIi~FL-~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 11 AALIVNYF-SSIVEKKEISEDGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp HHHHHHHH-HHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHH-HHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 36788999 88876422 234678899999999988864
No 100
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.22 E-value=1.1e+02 Score=26.88 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=84.9
Q ss_pred CHHHHhhhhhhcchhHHHHHHHHHhhhchhHHHH-HHHHHHHHHHhc-ChHHHHHHHhccCCCCcccccccC-----hHH
Q 047448 11 SESHRAQLLDDDGPSYVRVFVSILRDIYKEETVE-YVLALIDEMLTA-NPKRARLFHDKSLASEDTYEPFLS-----NWF 83 (249)
Q Consensus 11 ~~e~r~~~l~~~~~~y~~~fv~LL~~~sk~dtvq-yvL~LidDlL~e-~p~rv~~F~~~~~~~~~py~pfL~-----D~f 83 (249)
.++.|..++.++-+.|..+|+|.-++....|.++ ..|-.|+-|+.. |++-+.++.+ .+.....|+ ..-
T Consensus 86 hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-----tEiiplCLrime~Gsel 160 (268)
T 2fv2_A 86 HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-----TEIIPLCLRIMESGSEL 160 (268)
T ss_dssp CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-----TTHHHHHHHHHHHSCHH
T ss_pred CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-----hhHHHHHHHHHhhccHH
Confidence 3678889999999999999977766655556665 345568888754 4676666665 233333444 677
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhh-hhhhhHHHHH---HHHHH---Hh-cCCCCCCCChHHHHHHHHHHhccchhhHHHh
Q 047448 84 IQEKSCKILASIVRYLKHDPFAQR-CNSLEVGIFC---YIQLL---IL-KKPSHPSRGVPVAINCLAALLKEPMVRSSFV 155 (249)
Q Consensus 84 i~~~a~~iLt~Li~~~~~~~~~~~-~~~~~~~~l~---wL~~~---~l-~~~~~~~~~i~~~v~~Lq~LLr~~~yR~~fw 155 (249)
-...|..|+.+++.... ...- | ...+.|+. -| .+ ++ ..| ..+-+.-.+||+..|.-++..|.+.-
T Consensus 161 SKtvAtfIlqKIL~dd~---GL~YiC-~t~eRF~av~~vL-~~mV~~l~~~p--s~RLLKhiircYlRLsdn~rar~aL~ 233 (268)
T 2fv2_A 161 SKTVATFILQKILLDDT---GLAYIC-QTYERFSHVAMIL-GKMVLQLSKEP--SARLLKHVVRCYLRLSDNPRAREALR 233 (268)
T ss_dssp HHHHHHHHHHHHHHSHH---HHHHHT-SSHHHHHHHHHHH-HHHHHHTTTSC--CHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccch---hHHHHH-ccHHHHHHHHHHH-HHHHHHHhcCC--ChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88889999999998721 1100 0 00022222 22 22 11 223 22344558999999999999998876
Q ss_pred h
Q 047448 156 Q 156 (249)
Q Consensus 156 ~ 156 (249)
+
T Consensus 234 ~ 234 (268)
T 2fv2_A 234 Q 234 (268)
T ss_dssp H
T ss_pred H
Confidence 5
No 101
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=26.66 E-value=94 Score=24.84 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=32.8
Q ss_pred hhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 191 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 191 dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
+|++.|+.-|.|=+..- ..|++-+.|.||+|.+.||.-+--+|-|
T Consensus 38 eicD~I~~~~~~~keA~-----ral~krl~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 38 DICDKVGSTPNGAKDCL-----KAIMKRVNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp HHHHHHHHSSSHHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57788888876533222 2355667899999999999887777755
No 102
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.89 E-value=91 Score=25.14 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=34.1
Q ss_pred hhhhhhHhccchhHHHhhhchHHHHHhhccCCChhhhHHHHHHHHHHhch
Q 047448 191 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 240 (249)
Q Consensus 191 dig~~v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~v~~~al~~~q~~~~~ 240 (249)
+|...|+.-|.|-+.. -..|.+-+.|.|+.|.+.||.-+--+|-|
T Consensus 36 eicD~I~~~~~~~k~A-----~ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 36 GFCDQINKELEGPQIA-----VRLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHHHSTTHHHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7888898888664332 23466667899999999999888777755
No 103
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=25.30 E-value=42 Score=30.15 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=26.1
Q ss_pred HHHHHHhchhhh--------------hhHhccchhHHHhhhchHHHHHhhccCCC
Q 047448 183 LALAVACFDLSQ--------------FIQYHPAGRVIVTDLKAKERVMKLMNHEN 223 (249)
Q Consensus 183 ~~lava~~dig~--------------~v~~~p~g~~~~~~l~~k~~vm~l~~~~d 223 (249)
..+|-.|||+|+ .+..|.. .++|...+..-+ ++|.+++
T Consensus 111 lliAAl~HDv~HpG~~N~fli~~~~~LA~lYnd--SvLE~hH~a~a~-~iL~~~~ 162 (331)
T 2our_A 111 LLIACLCHDLDHRGFSNSYLQKFDHPLAALYST--STMEQHHFSQTV-SILQLEG 162 (331)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHTTCHHHHHSCS--SHHHHHHHHHHH-HHHTSTT
T ss_pred HHHHHHHccCCCCCCCCcHHHhcCCHHHHhcCC--chhHHHHHHHHH-HHHhccc
Confidence 456778999996 3456766 789998876555 4455544
No 104
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=23.36 E-value=38 Score=23.86 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=18.0
Q ss_pred hhhhhHhccchhHHHhhhc
Q 047448 192 LSQFIQYHPAGRVIVTDLK 210 (249)
Q Consensus 192 ig~~v~~~p~g~~~~~~l~ 210 (249)
||+.|+.||+-..++.+.|
T Consensus 9 I~eIv~~~P~~~~vf~~~G 27 (76)
T 2k53_A 9 IADVLQMDRGTAPIFINNG 27 (76)
T ss_dssp HHHHHHHCGGGHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 7999999999999999988
No 105
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=22.97 E-value=44 Score=30.31 Aligned_cols=40 Identities=13% Similarity=0.320 Sum_probs=27.5
Q ss_pred HHHHHHhchhhh--------------hhHhccchhHHHhhhchHHHHHhhccCCC
Q 047448 183 LALAVACFDLSQ--------------FIQYHPAGRVIVTDLKAKERVMKLMNHEN 223 (249)
Q Consensus 183 ~~lava~~dig~--------------~v~~~p~g~~~~~~l~~k~~vm~l~~~~d 223 (249)
..+|-+|||+|+ .+..|...+.++|...+-.-+ ++|+++.
T Consensus 115 lliAal~HDv~HpG~nN~fli~t~s~LA~lYn~d~SVLEnhH~a~~~-~lL~~~~ 168 (345)
T 3itu_A 115 LFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAI-AILNTHG 168 (345)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHTTCHHHHHHTTTSCHHHHHHHHHHH-HHHTSTT
T ss_pred HHHHHHHhcCCCCCCCCHHHHhcCCHHHHHhCCCCcHHHHHHHHHHH-HHhcccc
Confidence 556778999997 344666567899998865554 4555554
No 106
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.76 E-value=1.6e+02 Score=25.12 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccchh-hHHHhhcccccchHhhhcccc------ccchhhhHHHHHHHHHHhchhhhhhHhccchhHHHhh
Q 047448 136 VAINCLAALLKEPMV-RSSFVQADGVKLLTPLISPAS------TQQSIQLAGAMLALAVACFDLSQFIQYHPAGRVIVTD 208 (249)
Q Consensus 136 ~~v~~Lq~LLr~~~y-R~~fw~~~gv~~L~~iL~~~~------~~~~~Qllp~M~~lava~~dig~~v~~~p~g~~~~~~ 208 (249)
+++|++.-++..+.| |..+-.++-...++..+...- .+-++| .++|=..+.++-+...-+.. ++.
T Consensus 109 l~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~-----iA~ATl~~N~av~~~~~~~~---~e~ 180 (253)
T 3gae_A 109 LTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLA-----IAVSTLIFNYSALVTKGNSD---LEL 180 (253)
T ss_dssp HHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHH-----HHHHHHHHHHHHHHHTSCSC---TTH
T ss_pred HHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHH-----HHHHHHHHHHHHHHhhccch---HHH
Confidence 489999999999995 776655433555555542211 122333 22222234444444333321 222
Q ss_pred hchHHHHHh-hcc-----CCChhhhHHHHHHHHHHhc
Q 047448 209 LKAKERVMK-LMN-----HENTEVTKSALLCIQRLFL 239 (249)
Q Consensus 209 l~~k~~vm~-l~~-----~~d~~v~~~al~~~q~~~~ 239 (249)
++.-...+. ... .+|+|..|.+|.|..-++.
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 222222221 111 2499999999999999884
No 107
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A*
Probab=22.24 E-value=54 Score=29.42 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=27.4
Q ss_pred HHHHHHhchhhh------h--------hHhccchhHHHhhhchHHHHHhhccCCChh
Q 047448 183 LALAVACFDLSQ------F--------IQYHPAGRVIVTDLKAKERVMKLMNHENTE 225 (249)
Q Consensus 183 ~~lava~~dig~------~--------v~~~p~g~~~~~~l~~k~~vm~l~~~~d~~ 225 (249)
..+|-+|||+|+ | +..|. ++.++|...+-.-..-|+.++..+
T Consensus 108 ll~Aal~HD~~HpG~nN~fli~~~s~LA~lYn-d~SvLEnhH~a~~f~ll~~~~~~n 163 (338)
T 3ecm_A 108 ALIAATIHDVDHPGRTNSFLCNAGSELAILYN-DTAVLESHHAALAFQLTTGDDKCN 163 (338)
T ss_dssp HHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTT-TSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHhccCCCCccchHHHHhCCHHHHHcC-CCChhHHHHHHHHHHHHhcCcccc
Confidence 455778999996 2 22444 588999988766555445655433
No 108
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=21.35 E-value=48 Score=30.92 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHHHhchhhh--------------hhHhccchhHHHhhhchHHHHHhhccCCC
Q 047448 183 LALAVACFDLSQ--------------FIQYHPAGRVIVTDLKAKERVMKLMNHEN 223 (249)
Q Consensus 183 ~~lava~~dig~--------------~v~~~p~g~~~~~~l~~k~~vm~l~~~~d 223 (249)
..+|-+|||+|+ .+..|. ++.|+|...+-.-+.-+|++++
T Consensus 161 lliAAl~HDvdHpG~nN~Flv~t~spLA~lYn-D~SVLEnhH~a~af~llL~~~~ 214 (420)
T 1so2_A 161 LYVAAAMHDYDHPGRTNAFLVATNAPQAVLYN-DRSVLENHHAASAWNLYLSRPE 214 (420)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHTTCHHHHHTT-TSSHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHhcCCCCCCCCchhhhcCChHHHHhC-CccHHHHHHHHHHHHHHhcCcc
Confidence 456778999996 334454 4899999887766555565553
No 109
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=20.11 E-value=49 Score=33.25 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=27.7
Q ss_pred HHHHHHhchhhh--------------hhHhccchhHHHhhhchHHHHHhhccCCC
Q 047448 183 LALAVACFDLSQ--------------FIQYHPAGRVIVTDLKAKERVMKLMNHEN 223 (249)
Q Consensus 183 ~~lava~~dig~--------------~v~~~p~g~~~~~~l~~k~~vm~l~~~~d 223 (249)
..+|-.|||+|+ ....| ++.++|...+..-+ .+|.+++
T Consensus 649 ~~~aa~~HD~~HpG~~N~f~~~~~~~la~~y--~~svlE~~h~~~~~-~~l~~~~ 700 (878)
T 3bjc_A 649 LLIAALSHDLDHRGVNNSYIQRSEHPLAQLY--CHSIMEHHHFDQCL-MILNSPG 700 (878)
T ss_dssp HHHHHHHTTTTCCCTTCCTGGGSSCTTHHHH--CTTHHHHHHHHHHH-HHHTSTT
T ss_pred HHHHHHHccCCCCCCCCHHHHhcCCHHHHHc--CchHHHHHHHHHHH-HHHhCcc
Confidence 566778999994 45567 78999999987655 4555554
Done!