Query 047450
Match_columns 496
No_of_seqs 139 out of 239
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 11:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 2E-185 5E-190 1442.9 35.4 436 4-465 1-444 (478)
2 PF06305 DUF1049: Protein of u 62.8 27 0.00058 27.6 6.0 47 14-60 18-64 (68)
3 PRK11677 hypothetical protein; 56.9 18 0.00038 33.8 4.5 60 13-76 2-70 (134)
4 COG1033 Predicted exporters of 55.5 25 0.00054 41.0 6.3 56 18-73 252-318 (727)
5 TIGR02976 phageshock_pspB phag 49.8 45 0.00097 28.3 5.4 44 13-58 3-56 (75)
6 PF07219 HemY_N: HemY protein 45.7 37 0.0008 29.7 4.5 46 10-55 13-65 (108)
7 TIGR03777 RPE4 Rickettsial pal 44.4 9.7 0.00021 27.6 0.6 10 347-356 23-32 (32)
8 TIGR03144 cytochr_II_ccsB cyto 35.8 1.3E+02 0.0027 30.0 7.1 30 48-77 142-171 (243)
9 PF01578 Cytochrom_C_asm: Cyto 30.5 1.2E+02 0.0027 28.9 5.9 30 48-77 116-145 (214)
10 PF15468 DUF4636: Domain of un 30.2 28 0.00061 35.2 1.5 39 270-313 25-63 (243)
11 TIGR01106 ATPase-IIC_X-K sodiu 27.6 1.7E+02 0.0037 35.2 7.5 43 352-394 809-853 (997)
12 PF12801 Fer4_5: 4Fe-4S bindin 26.2 1.1E+02 0.0024 22.7 3.8 25 12-36 1-25 (48)
13 PF09878 DUF2105: Predicted me 25.7 86 0.0019 31.4 3.9 45 280-329 159-206 (212)
14 TIGR00921 2A067 The (Largely A 24.2 2.5E+02 0.0055 31.6 7.8 56 16-71 621-686 (719)
15 COG3105 Uncharacterized protei 23.9 1.3E+02 0.0028 28.5 4.5 61 12-76 6-75 (138)
16 TIGR00540 hemY_coli hemY prote 23.3 1.1E+02 0.0024 32.2 4.6 37 10-46 38-81 (409)
17 PF06295 DUF1043: Protein of u 23.3 1.4E+02 0.0031 27.2 4.6 52 24-76 6-66 (128)
18 PHA03105 EEV glycoprotein; Pro 22.9 1E+02 0.0022 30.1 3.7 34 16-49 9-42 (188)
19 COG1273 Ku-homolog [Replicatio 21.9 1.2E+02 0.0025 31.8 4.2 64 426-489 195-261 (278)
20 PRK10747 putative protoheme IX 20.8 1.2E+02 0.0027 31.8 4.3 37 10-46 38-81 (398)
21 PF05568 ASFV_J13L: African sw 20.5 1.8E+02 0.0038 28.2 4.7 45 9-55 21-65 (189)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=2.5e-185 Score=1442.94 Aligned_cols=436 Identities=54% Similarity=0.940 Sum_probs=414.2
Q ss_pred CCCCcccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccC
Q 047450 4 GGTTIEYTPTWVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQKIKEELMLLGFISLLLTVCQGFISKICIP 83 (496)
Q Consensus 4 ~~rsLe~TPTWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeKiK~ELMLLGFISLLLtv~q~~IskICIp 83 (496)
++|+||+|||||||+||+|||++|+++||++|++||||+|++||+|+|||||||+|||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCccCCccccccccCCCCCCCCCCcccccccc--ccCccccccCCcccccccccchhHHHHH
Q 047450 84 KKLAKTWLPCRENQRTKLHPIHGIKKDDLEFLSNPSFHFHPRVGRHLLAV--ESGEYYCKKQGKVPLLPETALHHLHIFI 161 (496)
Q Consensus 84 ~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RRlla~--~~~~~~C~~~GkvpliS~~~LHQLHIFI 161 (496)
++++++|+||+.+++.. . . +....+||+|+. ++++++|++||||||+|+||||||||||
T Consensus 81 ~~~~~~~lPC~~~~~~~------~---~----------~~~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFI 141 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESS------K---E----------GSSHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFI 141 (478)
T ss_pred hhHHhcccCCCCccccc------c---c----------ccchhhhhhhhhhcccccCcccccCccccccchhHHHHHHHH
Confidence 99999999998654111 0 0 111257888873 3455699988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhh------cccceeeeeeccchhccccCCCCchhHHHHHHH
Q 047450 162 FVLAVSHVTFCGLTVIFGGAKKIILSREIDLSDYERIIYAV------LERKLTNVREHDFVKNRFLGVGKRHAIIGWMQA 235 (496)
Q Consensus 162 FvLAv~HV~ys~lTm~Lg~~Kir~W~~~~~~k~WE~e~~~~------dp~r~~~~~qt~F~~~h~~~~~~~~~~l~w~~c 235 (496)
|||||+||+|||+||+||++|||+| |+||+|++++ ||+|++++||++|+++|++.|++ ++++.|++|
T Consensus 142 FVLAV~HV~Ys~lTm~Lg~~KIr~W------k~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~-~~~~~wi~~ 214 (478)
T PF03094_consen 142 FVLAVVHVLYSCLTMLLGRAKIRRW------KKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSK-SPVLSWIVC 214 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhccccccCcceeeeecccHHHHhhcCCccc-ChhHHhHHH
Confidence 9999999999999999999999999 9999999985 79999999999999999965555 778889999
Q ss_pred HHHHhccccchhhHHHHHhhhhhhccCCCCCCchHHHHHHHHhhccccceechhhHHHHHHHhhhcccccchhhHhHhhh
Q 047450 236 FCKQFFVSVNKADYTTLRHGFVMNHCRTNPKFNFHNYVTRAFEADFKKVVGISWHLWVIVVIFLLANVQDLHAYFWISFV 315 (496)
Q Consensus 236 FfrQF~~SV~k~DYltLR~GFI~~H~~~~~~FdF~kYi~RsLE~DFk~VVGIS~~lW~~vv~flLlnv~Gw~~yfWlsfi 315 (496)
||||||+||+|+||+|||+|||++|++++++||||+||+||||||||+||||||+||++||+|+|+|++|||+|||+|||
T Consensus 215 FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfi 294 (478)
T PF03094_consen 215 FFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFI 294 (478)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhcccccCcceecCCCCccccCcchHHHHHHHHHhhhhhhHHHHHHHHHHhcCCcc
Q 047450 316 PLILLICVGTKLQHILTQLAQDVAEKHMAVEGDLVVKPSDDHFWLHKPKLVLTLIHIILFQNSFELAVFFWILVQYGFHS 395 (496)
Q Consensus 316 PliliLlVGtKLq~IIt~lalei~~~~~~v~G~p~V~p~D~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~fG~~S 395 (496)
|++++|+||||||+||++||+|++|++++++|+|+|+|+|++||||||+|||+||||||||||||||||+|+||+||++|
T Consensus 295 pl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~s 374 (478)
T PF03094_consen 295 PLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDS 374 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccceEeEEeeeeehhhccccccchhhHHHHhhcccchhhhcchhHHHHHHHHHHHHHhhhhcccc
Q 047450 396 CIMGSVEYIIPRLVIGVFVQVLCSYSILPLYAIVVQMGSKFKKAIFKENIQEGLIHWAKKARKNIERRNR 465 (496)
Q Consensus 396 C~~~~~~~ii~Rl~~Gv~vQ~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~l~~W~~~ak~~~~~~~~ 465 (496)
|||++.+++++|+++|+++|++|||+|||||||||||||+||++||+|+|+++|++||++||||+++++.
T Consensus 375 C~~~~~~~~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~ 444 (478)
T PF03094_consen 375 CFMENTEYIIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKS 444 (478)
T ss_pred eEecCccceeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887763
No 2
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.82 E-value=27 Score=27.62 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=38.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHH
Q 047450 14 WVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQKIKEEL 60 (496)
Q Consensus 14 WaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeKiK~EL 60 (496)
+-++++.++..++++++=-.+.....+=.|++.+.+-..+++++.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888887777766777788889999999886
No 3
>PRK11677 hypothetical protein; Provisional
Probab=56.87 E-value=18 Score=33.80 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=38.4
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHH---------HHHHHHHHHHhhhhcc
Q 047450 13 TWVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQKIKEEL---------MLLGFISLLLTVCQGF 76 (496)
Q Consensus 13 TWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeKiK~EL---------MLLGFISLLLtv~q~~ 76 (496)
+|..|++++| |++++=.++.+++..= .++++.|-+-||+.|.|| =+--.-.||=+..++|
T Consensus 2 ~W~~a~i~li---vG~iiG~~~~R~~~~~-~~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y 70 (134)
T PRK11677 2 TWEYALIGLV---VGIIIGAVAMRFGNRK-LRQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDY 70 (134)
T ss_pred cHHHHHHHHH---HHHHHHHHHHhhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888876655 4445555555554432 146789999999999998 2344555665555554
No 4
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=55.50 E-value=25 Score=40.99 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----hhHHHHHHHHHHHHH------HHHHHHHHHhhh
Q 047450 18 GVCSVIVVISLTVERLLHKLGKLLKKKNQ-----RNLYEALQKIKEELM------LLGFISLLLTVC 73 (496)
Q Consensus 18 ~Vc~v~V~iSi~iEr~lH~lgk~lkkk~k-----kaL~eALeKiK~ELM------LLGFISLLLtv~ 73 (496)
....+.++|++.+++++|..-++.+.+++ .|+.+|+.|..-=++ -+||+||+.+-.
T Consensus 252 s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i 318 (727)
T COG1033 252 TSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSI 318 (727)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHccc
Confidence 34566788999999999999999887766 477777777766554 479999987543
No 5
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=49.77 E-value=45 Score=28.34 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=31.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCc----------hhHHHHHHHHHH
Q 047450 13 TWVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQ----------RNLYEALQKIKE 58 (496)
Q Consensus 13 TWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~k----------kaL~eALeKiK~ 58 (496)
.|.+++-..+|+++-..++-.+||..|| +..+ ..|++-.+|+++
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~--~~~~~ls~~d~~~L~~L~~~a~rm~e 56 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR--KTAASLSTDDQALLQELYAKADRLEE 56 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3566777777887778889999999988 4444 455555555554
No 6
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=45.66 E-value=37 Score=29.70 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=33.9
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHH-------HHHHHhhhCchhHHHHHHH
Q 047450 10 YTPTWVVGGVCSVIVVISLTVERLLHK-------LGKLLKKKNQRNLYEALQK 55 (496)
Q Consensus 10 ~TPTWaVA~Vc~v~V~iSi~iEr~lH~-------lgk~lkkk~kkaL~eALeK 55 (496)
||.-|...++..+++++-.++.+.+-. +.+|+++++++.-.+||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777788887765 5678888888777777654
No 7
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=44.42 E-value=9.7 Score=27.64 Aligned_cols=10 Identities=70% Similarity=0.826 Sum_probs=7.8
Q ss_pred CcceecCCCC
Q 047450 347 GDLVVKPSDD 356 (496)
Q Consensus 347 G~p~V~p~D~ 356 (496)
=+|||||+||
T Consensus 23 LD~VvKPR~D 32 (32)
T TIGR03777 23 LDPVVKPRDD 32 (32)
T ss_pred cccccccCCC
Confidence 4688899886
No 8
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=35.76 E-value=1.3e+02 Score=30.03 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 047450 48 NLYEALQKIKEELMLLGFISLLLTVCQGFI 77 (496)
Q Consensus 48 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 77 (496)
+=.+.+||+--.....||+-|.++...+.|
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~i 171 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGAV 171 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988875
No 9
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=30.46 E-value=1.2e+02 Score=28.91 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 047450 48 NLYEALQKIKEELMLLGFISLLLTVCQGFI 77 (496)
Q Consensus 48 aL~eALeKiK~ELMLLGFISLLLtv~q~~I 77 (496)
+-.+.+|++-.-++..||+.|.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 445788999999999999999998887765
No 10
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=30.18 E-value=28 Score=35.25 Aligned_cols=39 Identities=33% Similarity=0.657 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccccceechhhHHHHHHHhhhcccccchhhHhHh
Q 047450 270 HNYVTRAFEADFKKVVGISWHLWVIVVIFLLANVQDLHAYFWIS 313 (496)
Q Consensus 270 ~kYi~RsLE~DFk~VVGIS~~lW~~vv~flLlnv~Gw~~yfWls 313 (496)
++|=-| +||+-.++| +..||-||+|++|.=. .+.++|++
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm~~--~ras~Wms 63 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLMFF--SRASVWMS 63 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 455444 899999888 7899999988776532 36666643
No 11
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=27.63 E-value=1.7e+02 Score=35.19 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=33.5
Q ss_pred cCCC--CccccCcchHHHHHHHHHhhhhhhHHHHHHHHHHhcCCc
Q 047450 352 KPSD--DHFWLHKPKLVLTLIHIILFQNSFELAVFFWILVQYGFH 394 (496)
Q Consensus 352 ~p~D--~lFWF~rP~llL~LIhfiLFQNAFelAfF~W~~~~fG~~ 394 (496)
+|++ +=..++++.++...+-..++|-.++++.|+|.++.+|+.
T Consensus 809 ~P~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~ 853 (997)
T TIGR01106 809 QPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFL 853 (997)
T ss_pred CCcCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4544 346778887877777888899999999999998877753
No 12
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=26.17 E-value=1.1e+02 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=17.6
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHH
Q 047450 12 PTWVVGGVCSVIVVISLTVERLLHK 36 (496)
Q Consensus 12 PTWaVA~Vc~v~V~iSi~iEr~lH~ 36 (496)
|.|...+...++++++++..|.-..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 1 MAWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHh
Confidence 3455556666888899999886544
No 13
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=25.74 E-value=86 Score=31.44 Aligned_cols=45 Identities=36% Similarity=0.650 Sum_probs=27.8
Q ss_pred ccccceechhhHHHHHHHhhhcccccchhhHhHhhhHH---HHHHHhhhhhHH
Q 047450 280 DFKKVVGISWHLWVIVVIFLLANVQDLHAYFWISFVPL---ILLICVGTKLQH 329 (496)
Q Consensus 280 DFk~VVGIS~~lW~~vv~flLlnv~Gw~~yfWlsfiPl---iliLlVGtKLq~ 329 (496)
-...+-||.|.+|++.-+..++ ..-+|+.++=+ -+++=||+|+--
T Consensus 159 gi~~~SGiaWalWi~gF~~Ff~-----~P~~Wl~~L~lAg~gl~iKV~sKlgL 206 (212)
T PF09878_consen 159 GIEGVSGIAWALWIAGFIGFFL-----FPQYWLLALMLAGCGLLIKVGSKLGL 206 (212)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhcchhhhhhhhhhh
Confidence 3456789999999876544444 23456554432 356667777753
No 14
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=24.18 E-value=2.5e+02 Score=31.64 Aligned_cols=56 Identities=14% Similarity=0.393 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhCc----hhHHHHHHHHHHHH------HHHHHHHHHHh
Q 047450 16 VGGVCSVIVVISLTVERLLHKLGKLLKKKNQ----RNLYEALQKIKEEL------MLLGFISLLLT 71 (496)
Q Consensus 16 VA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~k----kaL~eALeKiK~EL------MLLGFISLLLt 71 (496)
.+.+....+++++.++..+|.+.+|.+++++ .++.+|+++.=.-+ +.+||.+|+++
T Consensus 621 ~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s 686 (719)
T TIGR00921 621 LAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLS 686 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 3455556688899999999999999776543 56666666655433 44577776653
No 15
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.92 E-value=1.3e+02 Score=28.47 Aligned_cols=61 Identities=28% Similarity=0.383 Sum_probs=39.6
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHHH---------HHHHHHHHHhhhhcc
Q 047450 12 PTWVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQKIKEELM---------LLGFISLLLTVCQGF 76 (496)
Q Consensus 12 PTWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 76 (496)
-+|..|.+-+| |+++|-.++-+|++- +-|+++.+-.-|||+|.+|= .----+||=|..|++
T Consensus 6 ~~W~~a~igLv---vGi~IG~li~Rlt~~-~~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 6 MTWEYALIGLV---VGIIIGALIARLTNR-KLKQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36877766543 455555666666665 23456688888999998763 223456777777776
No 16
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.31 E-value=1.1e+02 Score=32.15 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=24.1
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHH-------HHHHHHhhhCc
Q 047450 10 YTPTWVVGGVCSVIVVISLTVERLLH-------KLGKLLKKKNQ 46 (496)
Q Consensus 10 ~TPTWaVA~Vc~v~V~iSi~iEr~lH-------~lgk~lkkk~k 46 (496)
+|+=|+..++..+++++-+++++++. .+..|+.++++
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45666666666666666667888885 44557777544
No 17
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.29 E-value=1.4e+02 Score=27.21 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHHH---------HHHHHHHHHhhhhcc
Q 047450 24 VVISLTVERLLHKLGKLLKKKNQRNLYEALQKIKEELM---------LLGFISLLLTVCQGF 76 (496)
Q Consensus 24 V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeKiK~ELM---------LLGFISLLLtv~q~~ 76 (496)
++|++++=.++.++++.= .++++.|-+.|++.|+||= +-.-.-||=...+++
T Consensus 6 lvvG~iiG~~~~r~~~~~-~~~q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 6 LVVGLIIGFLIGRLTSSN-QQKQAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555442 2345789999999999983 556666776666654
No 18
>PHA03105 EEV glycoprotein; Provisional
Probab=22.87 E-value=1e+02 Score=30.14 Aligned_cols=34 Identities=32% Similarity=0.270 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhCchhH
Q 047450 16 VGGVCSVIVVISLTVERLLHKLGKLLKKKNQRNL 49 (496)
Q Consensus 16 VA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL 49 (496)
+.++|..++++..++--.-|.+.|+|+|+++|+.
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~~ 42 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKNI 42 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCCe
Confidence 3567888888888888888999999999888763
No 19
>COG1273 Ku-homolog [Replication, recombination, and repair]
Probab=21.88 E-value=1.2e+02 Score=31.78 Aligned_cols=64 Identities=13% Similarity=0.139 Sum_probs=45.8
Q ss_pred hHHHHhhcccchhhhcchhHHHHHHHHHHHHHhhhhc---ccccCCCCCCcchhhhhhhcccccccc
Q 047450 426 YAIVVQMGSKFKKAIFKENIQEGLIHWAKKARKNIER---RNRLDGNLSRSSSLASMLSRSYSSTFS 489 (496)
Q Consensus 426 YALVTQMGS~~K~~if~e~v~~~l~~W~~~ak~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
-.|+-||.++|.+.-|+++.+++|-.=-+.=++.++. .+......++++||-..|++|.+++=.
T Consensus 195 ~~lI~~~~~~fdp~~y~D~y~~aL~elI~aK~~g~~~~~~~~~~~p~~~nVidL~daLk~S~~~~~~ 261 (278)
T COG1273 195 KQLIDKKTGTFDPDEYEDRYQEALMELIEAKLEGRKTVAAPKKEPPEPSNVIDLMDALKASLEARKK 261 (278)
T ss_pred HHHHHHhcCCCChHHccCHHHHHHHHHHHHHHhCCCccccccCCCCCcccHHHHHHHHHHHHhccCC
Confidence 3678899999999999999999998764332222221 222233377888999999999876543
No 20
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.85 E-value=1.2e+02 Score=31.82 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=27.1
Q ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHHH-------HHHHhhhCc
Q 047450 10 YTPTWVVGGVCSVIVVISLTVERLLHKL-------GKLLKKKNQ 46 (496)
Q Consensus 10 ~TPTWaVA~Vc~v~V~iSi~iEr~lH~l-------gk~lkkk~k 46 (496)
+|+=|..++++.+++++.+++++++..+ ..|+.++|+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 5777887777777777777888888544 568777555
No 21
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.46 E-value=1.8e+02 Score=28.24 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=30.4
Q ss_pred ccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHH
Q 047450 9 EYTPTWVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQK 55 (496)
Q Consensus 9 e~TPTWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeK 55 (496)
--+|+.--.-.|++++.|-+++--+ -.|--|+.+||||+. .|+|+
T Consensus 21 ~~~psffsthm~tILiaIvVliiii-ivli~lcssRKkKaa-AAi~e 65 (189)
T PF05568_consen 21 VTPPSFFSTHMYTILIAIVVLIIII-IVLIYLCSSRKKKAA-AAIEE 65 (189)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH-hhhhh
Confidence 4567777777777777666655433 345668888888887 66654
Done!