Query 047450
Match_columns 496
No_of_seqs 139 out of 239
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 19:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 36.5 38 0.0013 26.1 4.0 37 9-46 8-44 (54)
2 2l8s_A Integrin alpha-1; trans 27.5 23 0.00079 27.4 1.4 44 9-54 5-48 (54)
3 2k1a_A Integrin alpha-IIB; sin 25.9 52 0.0018 24.1 3.0 35 9-44 6-40 (42)
4 1rh4_A Right-handed coiled coi 14.7 98 0.0034 21.5 2.2 16 45-60 18-33 (35)
5 2jwa_A Receptor tyrosine-prote 12.9 1.5E+02 0.0051 21.9 2.9 11 37-47 31-41 (44)
6 2zxx_A Geminin; coiled-coil, c 12.8 1.3E+02 0.0045 24.8 2.9 14 41-54 21-34 (79)
7 2uwj_E Type III export protein 12.1 91 0.0031 25.3 1.7 33 30-62 8-40 (70)
8 4h62_K Mediator of RNA polymer 11.4 1.2E+02 0.0041 21.6 1.9 22 44-65 7-28 (40)
9 1zke_A Hypothetical protein HP 10.2 42 0.0014 27.8 -0.9 18 47-64 65-82 (83)
10 3sok_A Fimbrial protein; pilus 10.0 4.5E+02 0.015 22.8 5.7 42 19-60 6-47 (151)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.45 E-value=38 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=20.8
Q ss_pred ccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Q 047450 9 EYTPTWVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQ 46 (496)
Q Consensus 9 e~TPTWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~k 46 (496)
+..|.|.+.+-...-+++=.++=.++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 357999654433333333334446777877 6666554
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.51 E-value=23 Score=27.39 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=21.4
Q ss_pred ccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHH
Q 047450 9 EYTPTWVVGGVCSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQ 54 (496)
Q Consensus 9 e~TPTWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALe 54 (496)
+..|.|.+.+-...-+++=.++=-++-++| +|||++ ++..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~-~~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPL-KKKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCC-SCCCCC--
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC-cchhhHHh
Confidence 468999643322222222223345667777 666554 44445444
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=25.94 E-value=52 Score=24.08 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=18.0
Q ss_pred ccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047450 9 EYTPTWVVGGVCSVIVVISLTVERLLHKLGKLLKKK 44 (496)
Q Consensus 9 e~TPTWaVA~Vc~v~V~iSi~iEr~lH~lgk~lkkk 44 (496)
+..|.|.+.+-...-+++=.++=.++.++| +|||+
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~ 40 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRN 40 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCC
Confidence 468999644333222222233445666776 55544
No 4
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=14.67 E-value=98 Score=21.50 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHHHH
Q 047450 45 NQRNLYEALQKIKEEL 60 (496)
Q Consensus 45 ~kkaL~eALeKiK~EL 60 (496)
-|-..+.||.|||.|+
T Consensus 18 ikaeilaalkkikqei 33 (35)
T 1rh4_A 18 IKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3567889999999985
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=12.91 E-value=1.5e+02 Score=21.94 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=6.9
Q ss_pred HHHHHhhhCch
Q 047450 37 LGKLLKKKNQR 47 (496)
Q Consensus 37 lgk~lkkk~kk 47 (496)
++=|++||+++
T Consensus 31 ~~~~~RRR~~~ 41 (44)
T 2jwa_A 31 FGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHCSC
T ss_pred HHhheehhhhh
Confidence 35577777654
No 6
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=12.75 E-value=1.3e+02 Score=24.82 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=9.2
Q ss_pred HhhhCchhHHHHHH
Q 047450 41 LKKKNQRNLYEALQ 54 (496)
Q Consensus 41 lkkk~kkaL~eALe 54 (496)
+..++|+||.+||+
T Consensus 21 lAE~RR~AL~eaL~ 34 (79)
T 2zxx_A 21 VAEQRRKALYEALK 34 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44566777777773
No 7
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=12.10 E-value=91 Score=25.28 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhhhCchhHHHHHHHHHHHHHH
Q 047450 30 VERLLHKLGKLLKKKNQRNLYEALQKIKEELML 62 (496)
Q Consensus 30 iEr~lH~lgk~lkkk~kkaL~eALeKiK~ELML 62 (496)
+|..|+-.+.-..++=+--|..||.++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555544444555566799999999999985
No 8
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=11.40 E-value=1.2e+02 Score=21.60 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=18.1
Q ss_pred hCchhHHHHHHHHHHHHHHHHH
Q 047450 44 KNQRNLYEALQKIKEELMLLGF 65 (496)
Q Consensus 44 k~kkaL~eALeKiK~ELMLLGF 65 (496)
-+||+|-.--||+.|.|=||.-
T Consensus 7 vnkkalgqdtekmeeqldllsa 28 (40)
T 4h62_K 7 VNKKALGQDTEKMEEQLDLLSA 28 (40)
T ss_pred ccHHhhcccHHHHHHHHHHHHH
Confidence 3678999999999999887643
No 9
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=10.16 E-value=42 Score=27.81 Aligned_cols=18 Identities=44% Similarity=0.794 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 047450 47 RNLYEALQKIKEELMLLG 64 (496)
Q Consensus 47 kaL~eALeKiK~ELMLLG 64 (496)
|+..+||+|+|.|+...|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 577899999999976544
No 10
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=10.02 E-value=4.5e+02 Score=22.76 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHHHHH
Q 047450 19 VCSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQKIKEEL 60 (496)
Q Consensus 19 Vc~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeKiK~EL 60 (496)
+..|+++|+|+.-=.+-.+..+.++.+.+.....+..++..+
T Consensus 6 llvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~ 47 (151)
T 3sok_A 6 LMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRI 47 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777778888888888877766666666666543
Done!