Query 047450
Match_columns 496
No_of_seqs 139 out of 239
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 19:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047450.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047450hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 22.7 17 0.0012 25.7 1.6 18 364-381 29-46 (51)
2 d3b60a2 f.37.1.1 (A:10-328) Mu 9.8 2E+02 0.015 23.4 5.7 26 13-38 155-180 (319)
3 d1yu8x1 a.14.1.1 (X:42-76) Vil 9.3 23 0.0017 23.4 -0.7 12 278-289 3-14 (35)
4 d1xrda1 f.3.1.1 (A:1-52) Light 9.2 68 0.005 22.8 1.8 16 154-169 14-30 (52)
5 d1unda_ a.14.1.1 (A:) Advillin 9.1 24 0.0018 23.4 -0.7 12 278-289 4-15 (36)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 8.7 2.5E+02 0.018 20.8 5.4 38 20-57 7-44 (158)
7 d1zkea1 a.30.6.1 (A:1-79) Hypo 8.5 51 0.0037 25.1 0.9 16 46-61 62-77 (79)
8 d1iwga8 f.35.1.1 (A:513-566,A: 7.7 2.3E+02 0.017 24.0 5.2 57 16-72 111-179 (222)
9 d2gola1 a.61.1.1 (A:7-107) HIV 7.3 58 0.0042 26.1 0.8 13 47-59 89-101 (101)
10 d1ug0a_ a.217.1.1 (A:) Splicin 7.2 98 0.0071 23.5 2.1 54 325-391 25-80 (88)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.69 E-value=17 Score=25.72 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhhhhhhHH
Q 047450 364 KLVLTLIHIILFQNSFEL 381 (496)
Q Consensus 364 ~llL~LIhfiLFQNAFel 381 (496)
.++|-|.|=.=|||||.|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 589999999999999976
No 2
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=9.83 E-value=2e+02 Score=23.38 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=16.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHH
Q 047450 13 TWVVGGVCSVIVVISLTVERLLHKLG 38 (496)
Q Consensus 13 TWaVA~Vc~v~V~iSi~iEr~lH~lg 38 (496)
.|.++.++.+.+.+.+++-....+-.
T Consensus 155 ~~~l~li~l~~~~~~~~~~~~~~~~~ 180 (319)
T d3b60a2 155 SWQLSIILVVLAPIVSIAIRVVSKRF 180 (319)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHHhhhhHH
Confidence 36677777777777776655544433
No 3
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.31 E-value=23 Score=23.39 Aligned_cols=12 Identities=42% Similarity=0.825 Sum_probs=9.4
Q ss_pred hhccccceechh
Q 047450 278 EADFKKVVGISW 289 (496)
Q Consensus 278 E~DFk~VVGIS~ 289 (496)
|+||..|.|||.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 578888888874
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.19 E-value=68 Score=22.84 Aligned_cols=16 Identities=50% Similarity=0.741 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHH-HH
Q 047450 154 LHHLHIFIFVLAVS-HV 169 (496)
Q Consensus 154 LHQLHIFIFvLAv~-HV 169 (496)
+--+|+|+|+||+. |.
T Consensus 14 lva~~~fL~~LAl~IHf 30 (52)
T d1xrda1 14 LVGLATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34579999999974 44
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.07 E-value=24 Score=23.45 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=9.4
Q ss_pred hhccccceechh
Q 047450 278 EADFKKVVGISW 289 (496)
Q Consensus 278 E~DFk~VVGIS~ 289 (496)
|+||..|.|+|.
T Consensus 4 d~dF~~vFgmsr 15 (36)
T d1unda_ 4 EQDFVSVFGITR 15 (36)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCcCH
Confidence 578888888874
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.68 E-value=2.5e+02 Score=20.75 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCchhHHHHHHHHH
Q 047450 20 CSVIVVISLTVERLLHKLGKLLKKKNQRNLYEALQKIK 57 (496)
Q Consensus 20 c~v~V~iSi~iEr~lH~lgk~lkkk~kkaL~eALeKiK 57 (496)
..|+++|+|+.==++=.+..+.++.+.+.....+.-++
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i~ 44 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQK 44 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777778877766655544444443
No 7
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=8.54 E-value=51 Score=25.14 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=12.9
Q ss_pred chhHHHHHHHHHHHHH
Q 047450 46 QRNLYEALQKIKEELM 61 (496)
Q Consensus 46 kkaL~eALeKiK~ELM 61 (496)
=|+..+||+|+|.|+.
T Consensus 62 LK~~IdaLNKiKke~l 77 (79)
T d1zkea1 62 LKELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3578899999999863
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.70 E-value=2.3e+02 Score=24.00 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh--hCchhHHHHHHHHHHHH----------HHHHHHHHHHhh
Q 047450 16 VGGVCSVIVVISLTVERLLHKLGKLLKK--KNQRNLYEALQKIKEEL----------MLLGFISLLLTV 72 (496)
Q Consensus 16 VA~Vc~v~V~iSi~iEr~lH~lgk~lkk--k~kkaL~eALeKiK~EL----------MLLGFISLLLtv 72 (496)
+.+.....+++++.++..+|.+..+.++ ++.+...||..+.-+|- +.+||++|++.-
T Consensus 111 ~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~~ 179 (222)
T d1iwga8 111 VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIST 179 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcc
Confidence 4455667788999999999999988653 33345555554444333 478999998854
No 9
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.32 E-value=58 Score=26.09 Aligned_cols=13 Identities=54% Similarity=0.718 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHH
Q 047450 47 RNLYEALQKIKEE 59 (496)
Q Consensus 47 kaL~eALeKiK~E 59 (496)
+.=-|||+||+||
T Consensus 89 kDTkEAl~kieee 101 (101)
T d2gola1 89 KDTKEALDKIEEE 101 (101)
T ss_dssp SBHHHHHHHHHHC
T ss_pred CchHHHHHHHhcC
Confidence 4457999999987
No 10
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.22 E-value=98 Score=23.48 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHhhcccccCccee-cCCCCccccCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhc
Q 047450 325 TKLQHILTQLAQDVAEKHMAVEGDLVV-KPSDDHFWLHK-PKLVLTLIHIILFQNSFELAVFFWILVQY 391 (496)
Q Consensus 325 tKLq~IIt~lalei~~~~~~v~G~p~V-~p~D~lFWF~r-P~llL~LIhfiLFQNAFelAfF~W~~~~f 391 (496)
.++..||.++|.=|++.+...+-...- +.+|..|||=+ |. .=.-+|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~~-------------~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKN-------------SREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSS-------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeCCCC-------------CCCcHHHHHHHHHH
Confidence 367899999999998876554433222 35788899843 33 22335666666665
Done!