BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047451
(778 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 174/640 (27%), Positives = 269/640 (42%), Gaps = 137/640 (21%)
Query: 166 TNLKALDLINVHISSTVPH--TLANLSSLHFLSLSGCRLQGEFPQEI---FQLPNLQFLG 220
+L +LDL +S V +L + S L FL++S L +FP ++ +L +L+ L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 154
Query: 221 VMKN----PNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFS 276
+ N N+ G++ L+ L +S + SG + S LE L +S N FS
Sbjct: 155 LSANSISGANVVGWVLS-DGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNN-FS 210
Query: 277 NELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTN 336
+P +G+ ++L+ L+IS SG ++ T+L L IS + F GP+
Sbjct: 211 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--------- 260
Query: 337 LNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQ-DQLISLDLSSNMI 395
PL + + Q + + E P FL D L LDLS N
Sbjct: 261 ---------------PPLPLKSLQYLSLAENKFT--GEIPDFLSGACDTLTGLDLSGNHF 303
Query: 396 AGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPV---LPWNNLGALDLRFNKLQGPLPI 452
G +P + S +F LP+ L L LDL FN+ G LP
Sbjct: 304 YGAVPPFFGSCSLLESLALSSN-----NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 453 PISVLTSSYL-----------------------------VSNNQLTGEIPPSICSLNGLY 483
++ L++S L + NN TG+IPP++ + + L
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 484 ALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPE--TFNKGTNLRMIDFSNNLL 541
+L LS+N LSG +P+ LG+ S +L LKL N G IP+ + K ++DF N+L
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDF-NDLT 476
Query: 542 --VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEF 599
+P L+NC L ++ L +N++T P W+G L L +L L +N+F G I P +
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDC 534
Query: 600 VKLRIIDLSHNRFAGNLPSKHF--------------------------ECWNA-----MK 628
L +DL+ N F G +P+ F EC A +
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 629 DVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGT----EMEYEKLSNLITATI- 683
+ + L L S P + + + G + S T N G+ +M Y LS I I
Sbjct: 595 GIRSEQLNRL--STRNPCNITSRVYGGHT--SPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 684 ---------LSNNSFVGEIPTSISNLKGLRTLNLSNNNLQ 714
L +N G IP + +L+GL L+LS+N L
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 178/681 (26%), Positives = 274/681 (40%), Gaps = 125/681 (18%)
Query: 43 NSDCCLWDGVKCNED--------------------------------------------- 57
N + C +DGV C +D
Sbjct: 33 NKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG 92
Query: 58 ---TGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTH 114
+ + LDL+ + L G V + +SL L+ L++ N +F S L + L
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 115 LNLSRSYFSGQIPAXXXXXXXXXXXXXSFNTFDNFFLKLQKPGLANLAENLTNLKALDLI 174
L+LS + SG + + K NL+ LD+
Sbjct: 153 LDLSANSISGA-------NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 205
Query: 175 NVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQF 234
+ + S+ +P L + S+L L +SG +L G+F + I L+ L + N G +P
Sbjct: 206 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL 263
Query: 235 QKSSPLEDLRLSYTRFSGKIPSSL-GNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLE 293
S L+ L L+ +F+G+IP L G L L LS GN F +PP G+ + L++L
Sbjct: 264 PLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLS-GNHFYGAVPPFFGSCSLLESLA 321
Query: 294 ISSFNFSGTL-QASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNE 352
+SS NFSG L +L + L L +S + FSG + SL+ L+ L +L+ + N +
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS--ASLLTLDLSSNNFSG 379
Query: 353 PLLV-----PNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAG 407
P+L P E+ + + P L N +L+SL LS N ++G IP S G
Sbjct: 380 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS---SLG 436
Query: 408 TXXXXXXXXXXXXXMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLV--SN 465
+ + E ++ L L L FN L G +P +S T+ + SN
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 466 NQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETF 525
N+LTGEIP I L L L LS N+ SG +PA LG+ +W L L N F+G IP
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW-LDLNTNLFNGTIPAAM 555
Query: 526 NKGTNLRMIDF--------------------SNNLL------------------------ 541
K + +F + NLL
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 542 -----VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596
+ N + FLD+ N ++ + P +G++P L +L L N+ G I P+
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI--PDEV 673
Query: 597 FEFVKLRIIDLSHNRFAGNLP 617
+ L I+DLS N+ G +P
Sbjct: 674 GDLRGLNILDLSSNKLDGRIP 694
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 182/686 (26%), Positives = 280/686 (40%), Gaps = 103/686 (15%)
Query: 51 GVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFS 110
G KC + + LDL+ + L G V + +SL L+ L++ N +F S L +
Sbjct: 92 GFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 148
Query: 111 RLTHLNLSRSYFSGQIPAXXXXXXXXXXXXXSFNTFDNFFLKLQKPGLANLAENLTNLKA 170
L L+LS + SG + + K NL+
Sbjct: 149 SLEVLDLSANSISGA-------NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 201
Query: 171 LDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGY 230
LD+ + + S+ +P L + S+L L +SG +L G+F + I L+ L + N G
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGP 259
Query: 231 LPQFQKSSPLEDLRLSYTRFSGKIPSSL-GNLTKLEDLYLSGGNGFSNELPPSIGNLASL 289
+P S L+ L L+ +F+G+IP L G L L LSG N F +PP G+ + L
Sbjct: 260 IPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSLL 317
Query: 290 KTLEISSFNFSGTL-QASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNC 348
++L +SS NFSG L +L + L L +S + FSG + SL+ L+ L +L+ +
Sbjct: 318 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSN 375
Query: 349 NLNEPLLV-----PNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWL 403
N + P+L P E+ + + P L N +L+SL LS N ++G IP
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-- 433
Query: 404 FSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLV 463
S G+ + E ++ L L L FN L G +P +S T+ +
Sbjct: 434 -SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 464 S--NNQLTGEIPPSICSLNGLYAL------------------------DLSYNNLSGMLP 497
S NN+LTGEIP I L L L DL+ N +G +P
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 498 ACLGNFSVQLW--------------------------VLKLQGNK--------------- 516
A + S ++ +L+ QG +
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 517 ----FHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSW 569
+ G TF+ ++ +D S N+L +PK + + L L+LG N I+ P
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 672
Query: 570 LGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPS-KHFECWNAMK 628
+G L L +L L SN G I P A L IDLS+N +G +P FE + K
Sbjct: 673 VGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Query: 629 DVNANNLTYLQDSLLGPVSYPAYTHY 654
+N L P + Y H+
Sbjct: 731 FLNNPGLCGYPLPRCDPSNADGYAHH 756
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 174/640 (27%), Positives = 269/640 (42%), Gaps = 137/640 (21%)
Query: 166 TNLKALDLINVHISSTVPH--TLANLSSLHFLSLSGCRLQGEFPQEI---FQLPNLQFLG 220
+L +LDL +S V +L + S L FL++S L +FP ++ +L +L+ L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLD 157
Query: 221 VMKN----PNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFS 276
+ N N+ G++ L+ L +S + SG + S LE L +S N FS
Sbjct: 158 LSANSISGANVVGWVLS-DGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNN-FS 213
Query: 277 NELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTN 336
+P +G+ ++L+ L+IS SG ++ T+L L IS + F GP+
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--------- 263
Query: 337 LNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQ-DQLISLDLSSNMI 395
PL + + Q + + E P FL D L LDLS N
Sbjct: 264 ---------------PPLPLKSLQYLSLAENKFT--GEIPDFLSGACDTLTGLDLSGNHF 306
Query: 396 AGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPV---LPWNNLGALDLRFNKLQGPLPI 452
G +P + S +F LP+ L L LDL FN+ G LP
Sbjct: 307 YGAVPPFFGSCSLLESLALSSN-----NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 453 PISVLTSSYL-----------------------------VSNNQLTGEIPPSICSLNGLY 483
++ L++S L + NN TG+IPP++ + + L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 484 ALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPE--TFNKGTNLRMIDFSNNLL 541
+L LS+N LSG +P+ LG+ S +L LKL N G IP+ + K ++DF N+L
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDF-NDLT 479
Query: 542 --VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEF 599
+P L+NC L ++ L +N++T P W+G L L +L L +N+F G I P +
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDC 537
Query: 600 VKLRIIDLSHNRFAGNLPSKHF--------------------------ECWNA-----MK 628
L +DL+ N F G +P+ F EC A +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 629 DVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGT----EMEYEKLSNLITATI- 683
+ + L L S P + + + G + S T N G+ +M Y LS I I
Sbjct: 598 GIRSEQLNRL--STRNPCNITSRVYGGHT--SPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 684 ---------LSNNSFVGEIPTSISNLKGLRTLNLSNNNLQ 714
L +N G IP + +L+GL L+LS+N L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 178/681 (26%), Positives = 274/681 (40%), Gaps = 125/681 (18%)
Query: 43 NSDCCLWDGVKCNED--------------------------------------------- 57
N + C +DGV C +D
Sbjct: 36 NKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG 95
Query: 58 ---TGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTH 114
+ + LDL+ + L G V + +SL L+ L++ N +F S L + L
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 115 LNLSRSYFSGQIPAXXXXXXXXXXXXXSFNTFDNFFLKLQKPGLANLAENLTNLKALDLI 174
L+LS + SG + + K NL+ LD+
Sbjct: 156 LDLSANSISGA-------NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 175 NVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQF 234
+ + S+ +P L + S+L L +SG +L G+F + I L+ L + N G +P
Sbjct: 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL 266
Query: 235 QKSSPLEDLRLSYTRFSGKIPSSL-GNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLE 293
S L+ L L+ +F+G+IP L G L L LS GN F +PP G+ + L++L
Sbjct: 267 PLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLS-GNHFYGAVPPFFGSCSLLESLA 324
Query: 294 ISSFNFSGTL-QASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNE 352
+SS NFSG L +L + L L +S + FSG + SL+ L+ L +L+ + N +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS--ASLLTLDLSSNNFSG 382
Query: 353 PLLV-----PNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAG 407
P+L P E+ + + P L N +L+SL LS N ++G IP S G
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS---SLG 439
Query: 408 TXXXXXXXXXXXXXMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLV--SN 465
+ + E ++ L L L FN L G +P +S T+ + SN
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 466 NQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETF 525
N+LTGEIP I L L L LS N+ SG +PA LG+ +W L L N F+G IP
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW-LDLNTNLFNGTIPAAM 558
Query: 526 NKGTNLRMIDF--------------------SNNLL------------------------ 541
K + +F + NLL
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 542 -----VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596
+ N + FLD+ N ++ + P +G++P L +L L N+ G I P+
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI--PDEV 676
Query: 597 FEFVKLRIIDLSHNRFAGNLP 617
+ L I+DLS N+ G +P
Sbjct: 677 GDLRGLNILDLSSNKLDGRIP 697
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 178/663 (26%), Positives = 274/663 (41%), Gaps = 103/663 (15%)
Query: 51 GVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFS 110
G KC + + LDL+ + L G V + +SL L+ L++ N +F S L +
Sbjct: 95 GFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151
Query: 111 RLTHLNLSRSYFSGQIPAXXXXXXXXXXXXXSFNTFDNFFLKLQKPGLANLAENLTNLKA 170
L L+LS + SG + + K NL+
Sbjct: 152 SLEVLDLSANSISGA-------NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204
Query: 171 LDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGY 230
LD+ + + S+ +P L + S+L L +SG +L G+F + I L+ L + N G
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-QFVGP 262
Query: 231 LPQFQKSSPLEDLRLSYTRFSGKIPSSL-GNLTKLEDLYLSGGNGFSNELPPSIGNLASL 289
+P S L+ L L+ +F+G+IP L G L L LSG N F +PP G+ + L
Sbjct: 263 IPPLPLKS-LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSLL 320
Query: 290 KTLEISSFNFSGTL-QASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNC 348
++L +SS NFSG L +L + L L +S + FSG + SL+ L+ L +L+ +
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--SLLTLDLSSN 378
Query: 349 NLNEPLLV-----PNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWL 403
N + P+L P E+ + + P L N +L+SL LS N ++G IP
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-- 436
Query: 404 FSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLV 463
S G+ + E ++ L L L FN L G +P +S T+ +
Sbjct: 437 -SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 464 S--NNQLTGEIPPSICSLNGLYAL------------------------DLSYNNLSGMLP 497
S NN+LTGEIP I L L L DL+ N +G +P
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 498 ACLGNFSVQLW--------------------------VLKLQGNK--------------- 516
A + S ++ +L+ QG +
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 517 ----FHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSW 569
+ G TF+ ++ +D S N+L +PK + + L L+LG N I+ P
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675
Query: 570 LGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPS-KHFECWNAMK 628
+G L L +L L SN G I P A L IDLS+N +G +P FE + K
Sbjct: 676 VGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Query: 629 DVN 631
+N
Sbjct: 734 FLN 736
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 103/228 (45%), Gaps = 18/228 (7%)
Query: 254 IPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQL 313
IPSSL NL L LY+ G N +PP+I L L L I+ N SG + L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 314 DSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPN-----TQKFEIIGLR 368
+L S + SG + S+S L NL +T F ++ +P+ ++ F + +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGIT---FDGNRISGA--IPDSYGSFSKLFTSMTIS 182
Query: 369 SCNLS-EFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHN 427
L+ + P N + L +DLS NM+ G LF G+ + F+
Sbjct: 183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA-SVLF--GSDKNTQKIHLAKNSLAFDLG 238
Query: 428 LPVLPWNNLGALDLRFNKLQGPLPIPISVLT--SSYLVSNNQLTGEIP 473
L NL LDLR N++ G LP ++ L S VS N L GEIP
Sbjct: 239 KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 104/281 (37%), Gaps = 61/281 (21%)
Query: 439 LDLRFNKLQGPLPIPISV-----LTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLS 493
LDL L P PIP S+ L Y+ N L G IPP+I L L+ L +++ N+S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 494 GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLK 553
G IP+ ++ L +DFS N L
Sbjct: 115 GA-------------------------IPDFLSQIKTLVTLDFSYNAL------------ 137
Query: 554 FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKL-RIIDLSHNRF 612
+ P + +LP L + N G I P++ F KL + +S NR
Sbjct: 138 ---------SGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRL 186
Query: 613 AGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEY 672
G +P A D++ N L L G H + + L G
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG----- 241
Query: 673 EKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNL 713
LS + L NN G +P ++ LK L +LN+S NNL
Sbjct: 242 --LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 128/328 (39%), Gaps = 51/328 (15%)
Query: 2 LCHDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDCC--LWDGVKCNEDTG 59
LC+ ++ ALL K+ L G P+ ++SW +DCC W GV C+ DT
Sbjct: 2 LCNPQDKQALLQIKKDL-------GNPTT---LSSW---LPTTDCCNRTWLGVLCDTDTQ 48
Query: 60 --HVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNL 117
V LDL+ L SSL L +L L + N IP I ++L +L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 118 SRSYFSGQIPAXXXXXXXXXXXXXSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVH 177
+ + SG IP + + L LD
Sbjct: 109 THTNVSGAIP--------------------------------DFLSQIKTLVTLDFSYNA 136
Query: 178 ISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKS 237
+S T+P ++++L +L ++ G R+ G P L + LTG +P +
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 238 SPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSF 297
L + LS G G+ + ++L+ N + +L +G +L L++ +
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA-KNSLAFDL-GKVGLSKNLNGLDLRNN 254
Query: 298 NFSGTLQASLGNLTQLDSLTISDSNFSG 325
GTL L L L SL +S +N G
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 37/220 (16%)
Query: 427 NLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLV----------------------- 463
NLP L + +G + N L GP+P I+ LT + +
Sbjct: 74 NLPYLNFLYIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 464 ---SNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGF 520
S N L+G +PPSI SL L + N +SG +P G+FS + + N+ G
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 521 IPETFNKGTNLRMIDFSNNLLVPKS---LANCVKLKFLDLGDNQITDFFPSWLGTLPELE 577
IP TF NL +D S N+L + + + + L N + F +G L
Sbjct: 190 IPPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLN 247
Query: 578 VLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP 617
L L++N +G + P + L +++S N G +P
Sbjct: 248 GLDLRNNRIYGTL--PQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 478 SLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFH-GFIPETFNKGTNLRMIDF 536
SL L LD+S+ + S L VLK+ GN F F+P+ F T LR
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIF---TELR---- 175
Query: 537 SNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596
L FLDL Q+ P+ +L L+VL + NNF + P C
Sbjct: 176 --------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Query: 597 FEFVKLRIIDLSHNRFAGNLPSKHF 621
+++ L+H + +HF
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHF 246
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 151 LKLQKPGLANLAE-----NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGE 205
L Q L ++E +L NL LD+ + H LSSL L ++G Q
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165
Query: 206 FPQEIF-QLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKL 264
F +IF +L NL FL L Q Q LE L P++ +L+ L
Sbjct: 166 FLPDIFTELRNLTFLD----------LSQCQ----LEQLS----------PTAFNSLSSL 201
Query: 265 EDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDS------LTI 318
+ L +S N FS + P L +L++ ++ + + + L S LT
Sbjct: 202 QVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
Query: 319 SDSNFSGPMSSSLSWLTNLNQL 340
+D + S L W+ + QL
Sbjct: 258 NDFACTCEHQSFLQWIKDQRQL 279
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 510 LKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLAN-----CVKLKFLDLGDNQITD 564
L+L+ NK F+K T L + S+N L K + LK+LDL N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 565 FFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSH 609
++LG L +LE L + +N + E + L +D+SH
Sbjct: 93 MSSNFLG-LEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISH 135
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 6/189 (3%)
Query: 166 TNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIF-QLPNLQFLGVMKN 224
+ K LDL + +SS L+ L L L+ +LQ P IF +L NL+ L V N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95
Query: 225 PNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSI- 283
+ F + L +LRL + P +LTKL YLS G LP +
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT--YLSLGYNELQSLPKGVF 153
Query: 284 GNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSL 343
L SLK L + + + + LT+L +L + ++ + L L L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 344 NFP-NCNLN 351
P +C N
Sbjct: 214 ENPWDCTCN 222
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 435 NLGALDLRFNKLQGPLPIPISVLT-----SSYLVSNNQLTGEIPPSICSLNGLYALDLSY 489
NL L + NKLQ +PI V + + NQL P SL L L L Y
Sbjct: 86 NLETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 490 NNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLA 547
N L LP + + L L+L N+ F+K T L+ + NN L VP+
Sbjct: 143 NELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201
Query: 548 NCV-KLKFLDLGDN 560
+ + KLK L L +N
Sbjct: 202 DSLEKLKMLQLQEN 215
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 87/219 (39%), Gaps = 29/219 (13%)
Query: 82 FQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAXXXXXXXXXXXXX 141
F+L HLQ ++ + E+P F+ L L L+R+ +PA
Sbjct: 101 FRLSHLQHXTI--DAAGLXELPDTXQQFAGLETLTLARNPLRA-LPASIA---------- 147
Query: 142 SFNTFDNFFLKLQKPGLANLAE------------NLTNLKALDLINVHISSTVPHTLANL 189
S N ++ P L L E L NL++L L I S +P ++ANL
Sbjct: 148 SLNRLRELSIR-ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANL 205
Query: 190 SSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTR 249
+L L + L P I LP L+ L + L Y P F +PL+ L L
Sbjct: 206 QNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 250 FSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLAS 288
+P + LT+LE L L G S LP I L +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPA 302
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 478 SLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFH-GFIPETFNKGTNLRMIDF 536
SL L LD+S+ + S L VLK+ GN F F+P+ F T LR
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIF---TELR---- 470
Query: 537 SNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596
L FLDL Q+ P+ +L L+VL + NNF + P C
Sbjct: 471 --------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516
Query: 597 FEFVKLRIIDLSHNRFAGNLPSKHF 621
+++ L+H + +HF
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHF 541
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 151 LKLQKPGLANLAE-----NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGE 205
L Q L ++E +L NL LD+ + H LSSL L ++G Q
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 206 FPQEIF-QLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKL 264
F +IF +L NL FL L Q Q LE L P++ +L+ L
Sbjct: 461 FLPDIFTELRNLTFLD----------LSQCQ----LEQLS----------PTAFNSLSSL 496
Query: 265 EDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDS------LTI 318
+ L +S N FS + P L +L++ ++ + + + L S LT
Sbjct: 497 QVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 319 SDSNFSGPMSSSLSWLTNLNQL 340
+D + S L W+ + QL
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQL 574
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 478 SLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFH-GFIPETFNKGTNLRMIDF 536
SL L LD+S+ + S L VLK+ GN F F+P+ F T LR
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIF---TELR---- 494
Query: 537 SNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596
L FLDL Q+ P+ +L L+VL + NNF + P C
Sbjct: 495 --------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 540
Query: 597 FEFVKLRIIDLSHNRFAGNLPSKHF 621
+++ L+H + +HF
Sbjct: 541 LNSLQVLDYSLNHIMTSKKQELQHF 565
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 40/202 (19%)
Query: 151 LKLQKPGLANLAE-----NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGE 205
L Q L ++E +L NL LD+ + H LSSL L ++G Q
Sbjct: 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 206 FPQEIF-QLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKL 264
F +IF +L NL FL L Q Q LE L P++ +L+ L
Sbjct: 485 FLPDIFTELRNLTFLD----------LSQCQ----LEQLS----------PTAFNSLSSL 520
Query: 265 EDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDS------LTI 318
+ L +S N FS + P L +L++ ++ + + + L S LT
Sbjct: 521 QVLNMSHNNFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 319 SDSNFSGPMSSSLSWLTNLNQL 340
+D + S L W+ + QL
Sbjct: 577 NDFACTCEHQSFLQWIKDQRQL 598
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 433 WNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNL 492
NNL L+L+ N++ P+ + +S N L +I L + LDL+ +
Sbjct: 68 LNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQI 125
Query: 493 SGMLP-ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNL---LVPKSLAN 548
+ + P A L N L VL L N+ P TNL+ + NN L P LAN
Sbjct: 126 TDVTPLAGLSN----LQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LAN 177
Query: 549 CVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589
KL L DN+I+D P L +LP L + LK N V
Sbjct: 178 LSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDV 216
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 9/156 (5%)
Query: 434 NNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLS 493
NNL ++ N+L P+ L++NNQ+ +I P + +L L L L N ++
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNNQIT 120
Query: 494 GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLK 553
+ P L N + L L+L N + T+L+ ++F N + K LAN L+
Sbjct: 121 DIDP--LKNLT-NLNRLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 554 FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589
LD+ N+++D S L L LE LI +N +
Sbjct: 176 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 134/312 (42%), Gaps = 29/312 (9%)
Query: 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317
L NLTKL D+ ++ N ++ P + NL +L L + FN T L NLT L+ L
Sbjct: 81 LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTL--FNNQITDIDPLKNLTNLNRLE 135
Query: 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLN-EPLLVPNTQKFEIIGLRSCNLSEFP 376
+S + S S+LS LT+L QL NF N + +PL N E + + S +S+
Sbjct: 136 LSSNTISDI--SALSGLTSLQQL---NFGNQVTDLKPL--ANLTTLERLDISSNKVSDI- 187
Query: 377 SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNL 436
S L L SL ++N I+ P + + + + NL
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTLASLTNL 240
Query: 437 GALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGML 496
LDL N++ P+ + + NQ++ P + L L L+L+ N L +
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 298
Query: 497 PACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKLKFL 555
P + N L L L N P + T L+ + FSNN + SLAN + +L
Sbjct: 299 P--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVSSLANLTNINWL 353
Query: 556 DLGDNQITDFFP 567
G NQI+D P
Sbjct: 354 SAGHNQISDLTP 365
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 434 NNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLS 493
NNL ++ N+L P+ L++NNQ+ +I P + +L L L L N ++
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNNQIT 120
Query: 494 GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKL 552
+ P L N + L L+L N + T+L+ + FS+N + K LAN L
Sbjct: 121 DIDP--LKNLT-NLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTL 175
Query: 553 KFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589
+ LD+ N+++D S L L LE LI +N +
Sbjct: 176 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 210
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 133/311 (42%), Gaps = 26/311 (8%)
Query: 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317
L NLTKL D+ ++ N ++ P + NL +L L + FN T L NLT L+ L
Sbjct: 81 LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTL--FNNQITDIDPLKNLTNLNRLE 135
Query: 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPS 377
+S + S S+LS LT+L QL+ F + + + + N E + + S +S+ S
Sbjct: 136 LSSNTISDI--SALSGLTSLQQLS---FSSNQVTDLKPLANLTTLERLDISSNKVSDI-S 189
Query: 378 FLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNLG 437
L L SL ++N I+ P + + + + NL
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTLASLTNLT 242
Query: 438 ALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP 497
LDL N++ P+ + + NQ++ P + L L L+L+ N L + P
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 498 ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKLKFLD 556
+ N L L L N P + T L+ + FSNN + SLAN + +L
Sbjct: 301 --ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVSSLANLTNINWLS 355
Query: 557 LGDNQITDFFP 567
G NQI+D P
Sbjct: 356 AGHNQISDLTP 366
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 434 NNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLS 493
NNL L+L+ N++ P+ + +S N L +I L + LDL+ ++
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQIT 120
Query: 494 GMLP-ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSN---NLLVPKSLANC 549
+ P A L N L VL L N+ P TNL+ + N + L P LAN
Sbjct: 121 DVTPLAGLSN----LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL 172
Query: 550 VKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589
KL L DN+I+D P L +LP L + LK+N V
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV 210
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 6/210 (2%)
Query: 164 NLTNLKALDLI-NVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVM 222
L L+ LDL N + S P T L LH L L C LQ P L LQ+L +
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 136
Query: 223 KNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPS 282
N F+ L L L R S + L L+ L L N ++ P +
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHA 195
Query: 283 IGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSS--LSWLTNLNQL 340
+L L TL + + N S +L L L L ++D+ + + +WL
Sbjct: 196 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG- 254
Query: 341 TSLNFPNCNLNEPLLVPNTQKFEIIGLRSC 370
+S P C+L + L + ++ L+ C
Sbjct: 255 SSSEVP-CSLPQRLAGRDLKRLAANDLQGC 283
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 82/210 (39%), Gaps = 6/210 (2%)
Query: 164 NLTNLKALDLI-NVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVM 222
L L+ LDL N + S P T L LH L L C LQ P L LQ+L +
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 223 KNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPS 282
N F+ L L L R S + L L+ L L N ++ P +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH-QNRVAHVHPHA 196
Query: 283 IGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSS--LSWLTNLNQL 340
+L L TL + + N S +L L L L ++D+ + + +WL
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG- 255
Query: 341 TSLNFPNCNLNEPLLVPNTQKFEIIGLRSC 370
+S P C+L + L + ++ L+ C
Sbjct: 256 SSSEVP-CSLPQRLAGRDLKRLAANDLQGC 284
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 132/311 (42%), Gaps = 26/311 (8%)
Query: 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317
L NLTKL D+ ++ N ++ P + NL +L L + FN T L NLT L+ L
Sbjct: 81 LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTL--FNNQITDIDPLKNLTNLNRLE 135
Query: 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPS 377
+S + S S+LS LT+L QL NF + + + + N E + + S +S+ S
Sbjct: 136 LSSNTISDI--SALSGLTSLQQL---NFSSNQVTDLKPLANLTTLERLDISSNKVSDI-S 189
Query: 378 FLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNLG 437
L L SL ++N I+ P + + + + NL
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTLASLTNLT 242
Query: 438 ALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP 497
LDL N++ P+ + + NQ++ P + L L L+L+ N L + P
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 498 ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKLKFLD 556
+ N L L L N P + T L+ + F NN + SLAN + +L
Sbjct: 301 --ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLS 355
Query: 557 LGDNQITDFFP 567
G NQI+D P
Sbjct: 356 AGHNQISDLTP 366
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 453 PISVLTSSYLVS-NNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLK 511
P + L +S ++S + Q +P S+ S L LDLS+NNLS + L L
Sbjct: 13 PANCLCASNILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLL 70
Query: 512 LQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLG 571
L N + E F NLR +D S+N L + + +F
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSNHL------------------HTLDEFL---FS 109
Query: 572 TLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613
L LEVL+L +N H V+ + NA + +L+ + LS N+ +
Sbjct: 110 DLQALEVLLLYNN--HIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 33/153 (21%)
Query: 461 YLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGF 520
YL ++ P I +L LY+L L+YN + + P L + + H F
Sbjct: 159 YLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLT-----------SLHYF 204
Query: 521 IPETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLI 580
+ N + +AN +L L +G+N+ITD P L L +L L
Sbjct: 205 TA-------------YVNQITDITPVANXTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249
Query: 581 LKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613
+ +N I + NA + KL+ +++ N+ +
Sbjct: 250 IGTNQ----ISDINAVKDLTKLKXLNVGSNQIS 278
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 164 NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMK 223
N T L L + + P +ANL+ L+ LSL+ +++ P + L +L +
Sbjct: 153 NXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF---- 204
Query: 224 NPNLTGYLPQFQKSSPLEDL-RLSYTRF-SGKIP--SSLGNLTKLEDLYLSGGNGFSNEL 279
T Y+ Q +P+ + RL+ + + KI S L NL++L L + G N S+
Sbjct: 205 ----TAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEI-GTNQISD-- 257
Query: 280 PPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQ 339
++ +L LK L + S S + L NL+QL+SL ++++ + LTNL
Sbjct: 258 INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTT 315
Query: 340 L 340
L
Sbjct: 316 L 316
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 42/257 (16%)
Query: 148 NFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFP 207
N ++ K + +NLTNL+ L L +IS P LANL+ + L+L
Sbjct: 92 NLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGA-------- 141
Query: 208 QEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDL 267
N NL+ P + L L ++ ++ P + NLT L L
Sbjct: 142 ----------------NHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSL 182
Query: 268 YLSGGNGFSNELPPSIGNLASLKTLE-ISSFNFSGTLQASLGNLTQLDSLTISDSNFSGP 326
L+ N++ I LASL +L +++ T + N T+L+SL I ++ +
Sbjct: 183 SLN-----YNQIE-DISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKIT-- 234
Query: 327 MSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLI 386
LS L NL+QLT L +++ V + K + + + S +S+ S L+N QL
Sbjct: 235 ---DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDI-SVLNNLSQLN 290
Query: 387 SLDLSSNMIAGKIPEWL 403
SL L++N + + E +
Sbjct: 291 SLFLNNNQLGNEDXEVI 307
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 133/312 (42%), Gaps = 29/312 (9%)
Query: 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317
L NLTKL D+ ++ N ++ P + NL +L L + FN T L NLT L+ L
Sbjct: 81 LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTL--FNNQITDIDPLKNLTNLNRLE 135
Query: 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLN-EPLLVPNTQKFEIIGLRSCNLSEFP 376
+S + S S+LS LT+L QL NF N + +PL N E + + S +S+
Sbjct: 136 LSSNTISDI--SALSGLTSLQQL---NFGNQVTDLKPL--ANLTTLERLDISSNKVSDI- 187
Query: 377 SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNL 436
S L L SL ++N I+ P + + + + NL
Sbjct: 188 SVLAKLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTLASLTNL 240
Query: 437 GALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGML 496
LDL N++ P+ + + NQ++ P + L L L+L+ N L +
Sbjct: 241 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 298
Query: 497 PACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKLKFL 555
P + N L L L N P + T L+ + F NN + SLAN + +L
Sbjct: 299 P--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 353
Query: 556 DLGDNQITDFFP 567
G NQI+D P
Sbjct: 354 SAGHNQISDLTP 365
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 121/288 (42%), Gaps = 42/288 (14%)
Query: 434 NNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLS 493
NNL ++ N+L P+ L++NNQ+ +I P + +L L L L N ++
Sbjct: 63 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNNQIT 120
Query: 494 GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLK 553
+ P L N + L L+L N + T+L+ ++F N + K LAN L+
Sbjct: 121 DIDP--LKNLT-NLNRLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 554 FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613
LD+ N+++D S L L LE LI +N I + L + L+ N+
Sbjct: 176 RLDISSNKVSDI--SVLAKLTNLESLIATNNQ----ISDITPLGILTNLDELSLNGNQL- 228
Query: 614 GNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEM--- 670
K ++ ++ +L Q S L P+S G + K TE+
Sbjct: 229 -----KDIGTLASLTNLTDLDLANNQISNLAPLS-------GLT--------KLTELKLG 268
Query: 671 --EYEKLSNLITATILSN---NSFVGEIPTSISNLKGLRTLNLSNNNL 713
+ +S L T L+N N E + ISNLK L L L NN+
Sbjct: 269 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 316
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 134/312 (42%), Gaps = 29/312 (9%)
Query: 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317
L NLTKL D+ ++ N ++ P + NL +L L + FN T L NLT L+ L
Sbjct: 85 LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTL--FNNQITDIDPLKNLTNLNRLE 139
Query: 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLN-EPLLVPNTQKFEIIGLRSCNLSEFP 376
+S + S S+LS LT+L QL+ F N + +PL N E + + S +S+
Sbjct: 140 LSSNTISDI--SALSGLTSLQQLS---FGNQVTDLKPL--ANLTTLERLDISSNKVSDI- 191
Query: 377 SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNL 436
S L L SL ++N I+ P + + + + NL
Sbjct: 192 SVLAKLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTLASLTNL 244
Query: 437 GALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGML 496
LDL N++ P+ + + NQ++ P + L L L+L+ N L +
Sbjct: 245 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 302
Query: 497 PACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKLKFL 555
P + N L L L N P + T L+ + F+NN + SLAN + +L
Sbjct: 303 P--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWL 357
Query: 556 DLGDNQITDFFP 567
G NQI+D P
Sbjct: 358 SAGHNQISDLTP 369
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 521 IPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEV 578
+P +NLR++D S+N L +P L +C +LK+ DN +T P G L L+
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQF 320
Query: 579 LILKSN 584
L ++ N
Sbjct: 321 LGVEGN 326
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVM 222
+NL+NL+ LDL + ++S +P L + L + + P E L NLQFLGV
Sbjct: 267 KNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVE 324
Query: 223 KNP 225
NP
Sbjct: 325 GNP 327
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 457 LTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGN 502
LT YL + N LT E+P I +L+ L LDLS+N L+ LPA LG+
Sbjct: 249 LTRLYL-NGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 264 LEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNF 323
L LYL+G + ELP I NL++L+ L++S N +L A LG+ QL D+
Sbjct: 249 LTRLYLNGNS--LTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN-- 303
Query: 324 SGPMSSSLSW 333
M ++L W
Sbjct: 304 ---MVTTLPW 310
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 132/311 (42%), Gaps = 26/311 (8%)
Query: 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317
L NLTKL D+ ++ N ++ P + NL +L L + FN T L NLT L+ L
Sbjct: 81 LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTL--FNNQITDIDPLKNLTNLNRLE 135
Query: 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPS 377
+S + S S+LS LT+L QL+ F + + + + N E + + S +S+ S
Sbjct: 136 LSSNTISDI--SALSGLTSLQQLS---FSSNQVTDLKPLANLTTLERLDISSNKVSDI-S 189
Query: 378 FLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNLG 437
L L SL ++N I+ P + + + + NL
Sbjct: 190 VLAKLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTLASLTNLT 242
Query: 438 ALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP 497
LDL N++ P+ + + NQ++ P + L L L+L+ N L + P
Sbjct: 243 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Query: 498 ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKLKFLD 556
+ N L L L N P + T L+ + F NN + SLAN + +L
Sbjct: 301 --ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLS 355
Query: 557 LGDNQITDFFP 567
G NQI+D P
Sbjct: 356 AGHNQISDLTP 366
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 521 IPETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLI 580
+PET T +R+ + ++ P + + KL+ +DL +NQI++ P L L L+
Sbjct: 30 LPETI---TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 581 LKSNNFHGVIEEPNACFE 598
L N + E P + FE
Sbjct: 87 LYGNK---ITELPKSLFE 101
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 10/214 (4%)
Query: 165 LTNLKALDLI-NVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMK 223
LT L+ LDL N + P T L LH L L C LQ P L LQ+L +
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 224 NPNLTGYLPQ--FQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPP 281
N NL LP F+ L L L R + L L+ L L N + P
Sbjct: 138 N-NLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLH-QNHVARVHPH 194
Query: 282 SIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSS--LSWLTNLNQ 339
+ +L L TL + + N S L L L L ++D+ + + +WL
Sbjct: 195 AFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRG 254
Query: 340 LTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLS 373
+S P CNL + L + ++ L C ++
Sbjct: 255 -SSSEVP-CNLPQRLAGRDLKRLAASDLEGCAVA 286
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 25/257 (9%)
Query: 472 IPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGN-KFHGFIPETFNKGTN 530
+P I +N L L L+ N+ + +F L L ++GN + K N
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFP-SLRDLYIKGNMRKLDLGTRCLEKLEN 350
Query: 531 LRMIDFSNNLLVPKS-----LANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNN 585
L+ +D S++ + L N L++L+L N+ P+LE+L + +
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 586 FHGVIEEPNACFEFVKL-RIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLT--YLQDSL 642
H ++ P++ F+ + L R+++LSH L + + ++D+ NL QD
Sbjct: 411 LH--VKAPHSPFQNLHLLRVLNLSHCL----LDTSNQHLLAGLQDLRHLNLQGNSFQD-- 462
Query: 643 LGPVSYPAYTHYGFSDYSLTLSNKG----TEMEYEKLSNLITATILSNNSFVGEIPTSIS 698
G +S S L LS+ + + L N + LS+NS G+ ++S
Sbjct: 463 -GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRN-VNHLDLSHNSLTGDSMDALS 520
Query: 699 NLKGLRTLNLSNNNLQV 715
+LKGL LN+++NN+++
Sbjct: 521 HLKGLY-LNMASNNIRI 536
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 521 IPETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLI 580
+PET T +R+ + ++ P + + KL+ +DL +NQI++ P L L L+
Sbjct: 30 LPETI---TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 86
Query: 581 LKSNNFHGVIEEPNACFE 598
L N + E P + FE
Sbjct: 87 LYGNK---ITELPKSLFE 101
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 485 LDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPK 544
LDL N+L LP + + L L L GNK FNK T+L ++ S N L +
Sbjct: 33 LDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--Q 89
Query: 545 SLANCV-----KLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFE- 598
SL N V +LK L L NQ+ L +L+ L L N V P+ F+
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV---PDGVFDR 146
Query: 599 FVKLRIIDLSHNRFAGNLPSKHF 621
L+ I L N + P +
Sbjct: 147 LTSLQYIWLHDNPWDCTCPGIRY 169
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 133/312 (42%), Gaps = 29/312 (9%)
Query: 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317
L NLTKL D+ ++ N ++ P + NL +L L + FN T L NLT L+ L
Sbjct: 86 LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLTL--FNNQITDIDPLKNLTNLNRLE 140
Query: 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLN-EPLLVPNTQKFEIIGLRSCNLSEFP 376
+S + S S+LS LT+L QL+ F N + +PL N E + + S +S+
Sbjct: 141 LSSNTISDI--SALSGLTSLQQLS---FGNQVTDLKPL--ANLTTLERLDISSNKVSDI- 192
Query: 377 SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTXXXXXXXXXXXXXMHFEHNLPVLPWNNL 436
S L L SL ++N I+ P + + + + NL
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILT-------NLDELSLNGNQLKDIGTLASLTNL 245
Query: 437 GALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGML 496
LDL N++ P+ + + NQ++ P + L L L+L+ N L +
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303
Query: 497 PACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVP-KSLANCVKLKFL 555
P + N L L L N P + T L+ + F NN + SLAN + +L
Sbjct: 304 P--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWL 358
Query: 556 DLGDNQITDFFP 567
G NQI+D P
Sbjct: 359 SAGHNQISDLTP 370
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 120/288 (41%), Gaps = 42/288 (14%)
Query: 434 NNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLS 493
NNL ++ N+L P+ L++NNQ+ +I P + +L L L L N ++
Sbjct: 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTLFNNQIT 125
Query: 494 GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLK 553
+ P L N + L L+L N + T+L+ + F N + K LAN L+
Sbjct: 126 DIDP--LKNLT-NLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKPLANLTTLE 180
Query: 554 FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613
LD+ N+++D S L L LE LI +N I + L + L+ N+
Sbjct: 181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQ----ISDITPLGILTNLDELSLNGNQL- 233
Query: 614 GNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEM--- 670
K ++ ++ +L Q S L P+S G + K TE+
Sbjct: 234 -----KDIGTLASLTNLTDLDLANNQISNLAPLS-------GLT--------KLTELKLG 273
Query: 671 --EYEKLSNLITATILSN---NSFVGEIPTSISNLKGLRTLNLSNNNL 713
+ +S L T L+N N E + ISNLK L L L NN+
Sbjct: 274 ANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 321
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIF-QLPNLQFLGV 221
+ LTNLK L L+ + S L++L +L+L+ +LQ P+ +F +L NL L +
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDL 164
Query: 222 MKNPNLTGYLPQ--FQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYL 269
N LP+ F K + L+DLRL + LT L+ ++L
Sbjct: 165 SYNQ--LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIF-QLPNLQFLGV 221
+ LTNL L L + S L++L L L +LQ P +F +L NL +L +
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNL 140
Query: 222 MKNPNLTGYLPQ--FQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYL 269
N LP+ F K + L +L LSY + LT+L+DL L
Sbjct: 141 AHNQ--LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
>pdb|2YP7|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus
pdb|2YP8|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP9|A Chain A, Haemagglutinin Of 2005 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 255 PSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLD 314
P G K DL++ +SN P + + ASL++L S SGTL+ + +
Sbjct: 74 PQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVAS----SGTLEFNNESFN-WT 128
Query: 315 SLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFE 363
+T + ++ + S+ S+ + LN LT L F LN + +PN +KF+
Sbjct: 129 GVTQNGTSSACKRKSNNSFFSRLNWLTHLKFKYPALN--VTMPNNEKFD 175
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 515 NKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLP 574
NK +P+ + +D + LVPK L+N L +DL +N+I+ +
Sbjct: 19 NKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 575 ELEVLILKSNNFHGVIEEPNACFEFVK-LRIIDLSHNRFA 613
+L LIL N + P F+ +K LR++ L N +
Sbjct: 79 QLLTLILSYNRLRCI---PPRTFDGLKSLRLLSLHGNDIS 115
>pdb|2YP2|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus
pdb|2YP3|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue 6sln
pdb|2YP4|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YP5|A Chain A, Haemagglutinin Of 2004 Human H3n2 Virus In Complex With
Avian Receptor Analogue 3sln
Length = 503
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 255 PSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLD 314
P G K DL++ +SN P + + ASL++L S SGTL+ + +
Sbjct: 74 PQCDGFQNKKWDLFVERSKAYSNCYPYDVPDYASLRSLVAS----SGTLEFNNESFN-WT 128
Query: 315 SLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFE 363
+T + ++ + S+ S+ + LN LT L F LN + +PN +KF+
Sbjct: 129 GVTQNGTSSACKRRSNNSFFSRLNWLTHLKFKYPALN--VTMPNNEKFD 175
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 67/169 (39%), Gaps = 18/169 (10%)
Query: 479 LNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSN 538
L L L+L YN L + + + +L L L N+ F+ T L +
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 539 NLLVPKSLANCV-----KLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEP 593
N L KSL + V KLK L L NQ+ L L+ L L +N V P
Sbjct: 117 NQL--KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---P 171
Query: 594 NACFEFV-KLRIIDLSHNRF-AGNLPSKHFECW-----NAMKDVNANNL 635
+ F+ + KL+ I L N+F + + W N +KD NL
Sbjct: 172 HGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQNL 220
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 534 IDFSNNLLVPKSLANCVK-LKFLDLGDNQITDFF---PSWLGTLPELEVLILKSNNFHGV 589
++ S LVP S + +K L+FLDL +N + + + + G P L+ L+L N+ +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 590 IEEPNACFEFVKLRIIDLSHNRF 612
+ L +D+S N F
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTF 399
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 33/188 (17%)
Query: 552 LKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNR 611
+K LDL N+IT L L+VLILKS+ + + E +A + L +DLS N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGSLEHLDLSDNH 85
Query: 612 FAGNLPSKHFECWNAMKDVNAN--------------NLTYLQDSLLGPVSYPAYTHYGFS 657
+ +L S F +++K +N NLT LQ +G V ++
Sbjct: 86 LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE--TFSEIRRI 142
Query: 658 DYSLTLSNKGTEMEYEKLSNLITATI------------LSNNSFVGEIPTSISNLKGLRT 705
D++ S E++ L N + ++ LS ++F+ EI I L +R
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI--LSSVRY 200
Query: 706 LNLSNNNL 713
L L + NL
Sbjct: 201 LELRDTNL 208
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 534 IDFSNNLLVPKSLANCVK-LKFLDLGDNQITDFF---PSWLGTLPELEVLILKSNNFHGV 589
++ S LVP S + +K L+FLDL +N + + + + G P L+ L+L N+ +
Sbjct: 343 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 402
Query: 590 IEEPNACFEFVKLRIIDLSHNRF 612
+ L +D+S N F
Sbjct: 403 QKTGEILLTLKNLTSLDISRNTF 425
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 33/188 (17%)
Query: 552 LKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNR 611
+K LDL N+IT L L+VLILKS+ + + E +A + L +DLS N
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--EGDAFYSLGSLEHLDLSDNH 111
Query: 612 FAGNLPSKHFECWNAMKDVNAN--------------NLTYLQDSLLGPVSYPAYTHYGFS 657
+ +L S F +++K +N NLT LQ +G V ++
Sbjct: 112 LS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE--TFSEIRRI 168
Query: 658 DYSLTLSNKGTEMEYEKLSNLITATI------------LSNNSFVGEIPTSISNLKGLRT 705
D++ S E++ L N + ++ LS ++F+ EI I L +R
Sbjct: 169 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI--LSSVRY 226
Query: 706 LNLSNNNL 713
L L + NL
Sbjct: 227 LELRDTNL 234
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 125/288 (43%), Gaps = 30/288 (10%)
Query: 441 LRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACL 500
L+ + LP I+VL +++NQL P + + L LD +N++S + P L
Sbjct: 14 LKLTHIPDDLPSNITVLN----LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-L 68
Query: 501 GNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMID-FSNNLLVPKS--LANCVKLKFLDL 557
L VL LQ N+ +TF TNL +D SN++ KS N L LDL
Sbjct: 69 CQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDL 128
Query: 558 GDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFV---KLRIIDLSHNRFAG 614
N ++ + LGT +LE L + ++ + EF+ LR +DLS N
Sbjct: 129 SHNGLSS---TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSN---- 181
Query: 615 NLPSKHFE--CWNAMKDV------NANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNK 666
P K F C+ + + NA +L + L +S + + ++ L +++
Sbjct: 182 --PLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSE 239
Query: 667 GTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQ 714
T K +NL T LS N+ S S L LR L+L NN+Q
Sbjct: 240 ST-FSGLKWTNL-TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 37/217 (17%)
Query: 423 HFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTS-SYLVSNNQLTGEIPPSICS-LN 480
H +LP +N+ L+L N+L+ P + + + L + ++ P +C L
Sbjct: 18 HIPDDLP----SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILP 73
Query: 481 GLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNL 540
L L+L +N LS + F L L L N H F NL +D S+N
Sbjct: 74 LLKVLNLQHNELSQISDQTFV-FCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 541 LVPKSLANCV-----------------------------KLKFLDLGDNQITDFFPSWLG 571
L L V L+ LDL N + +F P
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQ 192
Query: 572 TLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLS 608
T+ +L L+L + + + E C+E I +LS
Sbjct: 193 TIGKLFALLLNNAQLNPHLTE-KLCWELSNTSIQNLS 228
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 15/157 (9%)
Query: 466 NQLTG--EIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGF--I 521
NQ++G E+ C+LNG+ S N+ + P + +++ +L +F+ F +
Sbjct: 248 NQISGLLELEFDDCTLNGVGNFRASDND-RVIDPGKVETLTIR----RLHIPRFYLFYDL 302
Query: 522 PETFNKGTNLRMIDFSNN--LLVPKSLANCVK-LKFLDLGDNQITDFF---PSWLGTLPE 575
++ ++ I N+ LVP L+ +K L++LDL +N + + + + P
Sbjct: 303 STLYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPS 362
Query: 576 LEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRF 612
L+ LIL+ N+ + + L ID+S N F
Sbjct: 363 LQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSF 399
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 542 VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVK 601
+P L VK LDL +N+IT S L L+ L+L SN + + E ++
Sbjct: 20 IPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI--EEDSFSSLGS 75
Query: 602 LRIIDLSHNRFAGNLPSKHFE 622
L +DLS+N + NL S F+
Sbjct: 76 LEHLDLSYN-YLSNLSSSWFK 95
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 205 EFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKL 264
EF + L N V++ L G L Q S L++L L R S I ++L + L
Sbjct: 54 EFRVQHMDLSN----SVIEVSTLHGILSQ---CSKLQNLSLEGLRLSDPIVNTLAKNSNL 106
Query: 265 EDLYLSGGNGFSN-ELPPSIGNLASLKTLEIS-SFNFSGT-LQASLGNLTQLDSLTISDS 321
L LSG +GFS L + + + L L +S F+F+ +Q ++ ++++ TI+
Sbjct: 107 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE----TITQL 162
Query: 322 NFSG 325
N SG
Sbjct: 163 NLSG 166
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 208 QEIFQ-LPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKI--PSSLGNLTKL 264
+E F+ LPNL+ L + + + FQ L +LRL + S + NL L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 265 EDLYLSGGNGFSNELPPSIGNLASLKTLEISS 296
L LS S L PS G L SLK+++ SS
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 479 LNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSN 538
L L L+L YN L + + + +L L L N+ F+ T L +
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 539 NLLVPKSLANCV-----KLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEP 593
N L KSL + V KLK L L NQ+ L L+ L L +N V P
Sbjct: 117 NQL--KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV---P 171
Query: 594 NACFEFV-KLRIIDLSHNRF 612
+ F+ + KL+ I L N+F
Sbjct: 172 HGAFDRLGKLQTITLFGNQF 191
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 157 GLANLAENLTNLKALDL-------INVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQE 209
GLA +A NLK LDL ++ H S P T +L SL+ L+ +
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206
Query: 210 IFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDL 243
+ + PNL+ L + + L Q++ LE+L
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 553 KFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRF 612
+ LDLG N+I + P LE L L N V EP A LR + L NR
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRL 92
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQ-LPNLQFLGV 221
E L+ L+ L L N I S + + SL L L + + F+ L NL++L +
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
Query: 222 ----MKN-PNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFS 276
+K+ PNLT + LE+L LS R P S LT L L+L +
Sbjct: 164 GMCNLKDIPNLTALVR-------LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 277 NELPPSIGNLASLKTLEISSFNF 299
E + +L SL+ L +S N
Sbjct: 217 IE-RNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 95/255 (37%), Gaps = 28/255 (10%)
Query: 469 TGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKG 528
TG P+ CS + + + +PA + V L LQ N +TF
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELAEVPA---SIPVNTRYLNLQENSIQVIRTDTFKHL 58
Query: 529 TNLRMIDFSNNLLVPKSLA---NCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNN 585
+L ++ S NL+ + L L+L DN++T L +L L L++N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 586 FHGVIEEPNACFEFV-KLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLG 644
+ P+ F V LR +DL + + FE NL YL +
Sbjct: 119 IESI---PSYAFNRVPSLRRLDLGELKRLEYISEAAFE--------GLVNLRYLNLGMCN 167
Query: 645 PVSYPAYT------HYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSIS 698
P T S L L G+ ++ L++L ++ E +
Sbjct: 168 LKDIPNLTALVRLEELELSGNRLDLIRPGS---FQGLTSLRKLWLMHAQVATIE-RNAFD 223
Query: 699 NLKGLRTLNLSNNNL 713
+LK L LNLS+NNL
Sbjct: 224 DLKSLEELNLSHNNL 238
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 221 VMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSN-EL 279
V++ L G L Q K L++L L R S I ++L + L L LSG +GFS L
Sbjct: 104 VIEVSTLHGILSQCSK---LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 160
Query: 280 PPSIGNLASLKTLEIS-SFNFSGT-LQASLGNLTQLDSLTISDSNFSG 325
+ + + L L +S F+F+ +Q ++ ++++ TI+ N SG
Sbjct: 161 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE----TITQLNLSG 204
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 184 HTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDL 243
++ +N S L +L LS C ++ + L +L L + NP + F + LE+L
Sbjct: 45 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 104
Query: 244 RLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTL 303
T+ + +G L L+ L ++ S +LP NL +L +++ S+N+ T+
Sbjct: 105 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL-SYNYIQTI 163
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 184 HTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDL 243
++ +N S L +L LS C ++ + L +L L + NP + F + LE+L
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109
Query: 244 RLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTL 303
T+ + +G L L+ L ++ S +LP NL +L +++ S+N+ T+
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL-SYNYIQTI 168
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 542 VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVK 601
+P L VK LDL +N+IT S L L+ L+L SN + + E ++
Sbjct: 46 IPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI--EEDSFSSLGS 101
Query: 602 LRIIDLSHNRFAGNLPSKHFE 622
L +DLS+N + NL S F+
Sbjct: 102 LEHLDLSYN-YLSNLSSSWFK 121
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 14/143 (9%)
Query: 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQ-LPNLQFLGV 221
E L+ L+ L L N I S + + SL L L + + F+ L NL++L +
Sbjct: 104 EYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
Query: 222 ----MKN-PNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFS 276
+K+ PNLT + LE+L LS R P S LT L L+L +
Sbjct: 164 GMCNLKDIPNLTALVR-------LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 277 NELPPSIGNLASLKTLEISSFNF 299
E + +L SL+ L +S N
Sbjct: 217 IE-RNAFDDLKSLEELNLSHNNL 238
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 95/255 (37%), Gaps = 28/255 (10%)
Query: 469 TGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKG 528
TG P+ CS + + + +PA + V L LQ N +TF
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELAEVPA---SIPVNTRYLNLQENSIQVIRTDTFKHL 58
Query: 529 TNLRMIDFSNNLLVPKSLA---NCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNN 585
+L ++ S NL+ + L L+L DN++T L +L L L++N
Sbjct: 59 RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 586 FHGVIEEPNACFEFV-KLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLG 644
+ P+ F V LR +DL + + FE NL YL +
Sbjct: 119 IESI---PSYAFNRVPSLRRLDLGELKRLEYISEAAFE--------GLVNLRYLNLGMCN 167
Query: 645 PVSYPAYT------HYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSIS 698
P T S L L G+ ++ L++L ++ E +
Sbjct: 168 LKDIPNLTALVRLEELELSGNRLDLIRPGS---FQGLTSLRKLWLMHAQVATIE-RNAFD 223
Query: 699 NLKGLRTLNLSNNNL 713
+LK L LNLS+NNL
Sbjct: 224 DLKSLEELNLSHNNL 238
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 147 DNFFLKLQKPGLANLAE----NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRL 202
D L LQ + + + NL NL L LIN IS P A L L L LS +L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 203 QGEFPQEIFQLPNLQFLGVMKN 224
+ E P+++ + LQ L V +N
Sbjct: 113 K-ELPEKMPK--TLQELRVHEN 131
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 101/267 (37%), Gaps = 52/267 (19%)
Query: 477 CSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDF 536
C L + DL + LP +L LQ NK F NL +
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPP-------DTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 537 SNNLLV---PKSLANCVKLKFLDLGDNQITDFFPSWLGTLPEL-----EVLILKSNNFHG 588
NN + P + A VKL+ L L NQ+ + TL EL E+ ++ + F+G
Sbjct: 84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 143
Query: 589 -----VIE----------EPNACFEFVK----LRIIDLSHNRFAGNLPSKHFEC---WNA 626
V+E N F+ +K +RI D + LP E N
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203
Query: 627 MKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSN 686
+ V+A +L L + G S S++ + G+ L L L+N
Sbjct: 204 ITKVDAASLKGLNN----------LAKLGLSFNSISAVDNGSLANTPHLREL----HLNN 249
Query: 687 NSFVGEIPTSISNLKGLRTLNLSNNNL 713
N V ++P +++ K ++ + L NNN+
Sbjct: 250 NKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 147 DNFFLKLQKPGLANLAE----NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRL 202
D L LQ + + + NL NL L LIN IS P A L L L LS +L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112
Query: 203 QGEFPQEIFQLPNLQFLGVMKN 224
+ E P+++ + LQ L V +N
Sbjct: 113 K-ELPEKMPK--TLQELRVHEN 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,377,369
Number of Sequences: 62578
Number of extensions: 864872
Number of successful extensions: 3003
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2396
Number of HSP's gapped (non-prelim): 366
length of query: 778
length of database: 14,973,337
effective HSP length: 106
effective length of query: 672
effective length of database: 8,340,069
effective search space: 5604526368
effective search space used: 5604526368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)