Query 047451
Match_columns 778
No_of_seqs 801 out of 5006
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:11:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.4E-64 7.3E-69 610.8 45.4 559 4-720 27-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 6E-56 1.3E-60 538.7 41.4 498 85-725 69-571 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.6E-38 3.5E-43 326.0 7.7 402 113-626 55-465 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.5E-37 3.4E-42 318.8 7.9 362 239-635 79-449 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2E-39 4.3E-44 319.0 -10.8 479 84-619 44-545 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2E-39 4.4E-44 318.9 -15.2 470 61-587 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.7E-37 1E-41 332.1 -0.6 480 87-632 23-507 (1081)
8 KOG0618 Serine/threonine phosp 100.0 3.7E-35 7.9E-40 317.5 -5.6 484 60-610 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.8E-32 3.8E-37 283.3 -0.0 370 109-568 6-380 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 8E-31 1.7E-35 271.1 -0.7 296 84-396 6-304 (1255)
11 KOG4237 Extracellular matrix p 99.9 3E-24 6.6E-29 212.2 1.8 392 263-724 68-487 (498)
12 PRK15387 E3 ubiquitin-protein 99.9 2.7E-22 5.8E-27 226.0 17.0 263 364-725 205-469 (788)
13 PLN03210 Resistant to P. syrin 99.9 1.2E-20 2.5E-25 229.9 32.3 220 58-296 531-756 (1153)
14 PLN03210 Resistant to P. syrin 99.9 4.4E-21 9.6E-26 233.5 26.2 346 182-585 550-904 (1153)
15 KOG4237 Extracellular matrix p 99.9 1.5E-23 3.2E-28 207.3 -1.9 406 86-539 68-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 2.4E-20 5.2E-25 210.3 17.4 260 312-618 202-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 9.7E-19 2.1E-23 198.9 14.1 205 362-618 180-384 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.3E-18 5.1E-23 195.8 14.4 245 340-613 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-17 3.6E-22 176.0 3.2 112 90-203 3-121 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-17 5E-22 174.9 2.0 249 64-324 3-291 (319)
21 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.8E-22 146.6 -6.8 158 80-251 28-186 (264)
22 KOG0617 Ras suppressor protein 99.5 1.1E-16 2.5E-21 140.7 -4.7 146 471-619 70-218 (264)
23 PLN03150 hypothetical protein; 99.4 2.6E-12 5.6E-17 146.4 15.5 125 3-145 369-501 (623)
24 KOG0532 Leucine-rich repeat (L 99.3 3.1E-13 6.6E-18 140.8 0.8 194 415-620 56-253 (722)
25 KOG1259 Nischarin, modulator o 99.2 7.5E-12 1.6E-16 120.4 2.6 133 476-615 280-414 (490)
26 PLN03150 hypothetical protein; 99.2 9E-11 2E-15 133.8 10.9 107 552-713 420-527 (623)
27 KOG0532 Leucine-rich repeat (L 99.1 1.5E-12 3.3E-17 135.7 -4.1 193 359-585 74-271 (722)
28 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 125.2 1.9 210 358-589 119-341 (505)
29 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.9E-15 126.7 9.6 198 387-619 97-296 (394)
30 COG4886 Leucine-rich repeat (L 99.1 1.2E-10 2.6E-15 127.0 7.3 197 342-594 97-297 (394)
31 PF14580 LRR_9: Leucine-rich r 99.1 8.8E-11 1.9E-15 109.3 4.5 121 507-631 21-146 (175)
32 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.7E-15 108.3 5.1 128 476-608 15-148 (175)
33 KOG1259 Nischarin, modulator o 99.1 2.4E-11 5.2E-16 116.9 -0.2 116 471-590 298-415 (490)
34 KOG1909 Ran GTPase-activating 99.0 3.4E-11 7.3E-16 119.0 -0.3 133 479-612 156-310 (382)
35 KOG3207 Beta-tubulin folding c 99.0 5.7E-11 1.2E-15 120.6 1.2 161 260-448 119-285 (505)
36 KOG1909 Ran GTPase-activating 99.0 4.8E-11 1.1E-15 117.9 0.2 18 161-178 115-132 (382)
37 KOG0531 Protein phosphatase 1, 98.9 1.5E-10 3.2E-15 126.5 0.7 245 336-617 70-322 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.9 4.1E-09 8.8E-14 122.8 8.7 85 106-199 567-651 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 3.7E-09 8.1E-14 80.8 3.3 61 550-612 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 1.2E-09 2.6E-14 119.3 0.4 247 308-591 69-322 (414)
41 KOG1859 Leucine-rich repeat pr 98.7 3.4E-10 7.4E-15 121.4 -6.6 126 481-614 165-293 (1096)
42 KOG2120 SCF ubiquitin ligase, 98.7 5.6E-10 1.2E-14 107.7 -4.8 84 112-203 187-273 (419)
43 PF13855 LRR_8: Leucine rich r 98.6 1.5E-08 3.2E-13 77.4 2.8 57 530-586 2-61 (61)
44 KOG4658 Apoptotic ATPase [Sign 98.6 3.1E-08 6.7E-13 115.6 6.3 132 109-249 522-653 (889)
45 KOG2120 SCF ubiquitin ligase, 98.6 9E-10 1.9E-14 106.4 -5.3 157 135-298 186-349 (419)
46 PF08263 LRRNT_2: Leucine rich 98.4 3.4E-07 7.3E-12 63.8 4.5 43 4-55 1-43 (43)
47 KOG1859 Leucine-rich repeat pr 98.4 1.7E-08 3.6E-13 108.8 -3.4 170 455-635 108-289 (1096)
48 KOG2982 Uncharacterized conser 98.4 1.5E-07 3.2E-12 91.4 2.6 80 529-608 199-287 (418)
49 KOG2982 Uncharacterized conser 98.3 4.1E-07 8.9E-12 88.3 3.1 228 361-633 46-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.2 3E-07 6.6E-12 88.0 0.9 115 237-352 156-286 (388)
51 KOG4341 F-box protein containi 98.1 1.9E-07 4E-12 95.0 -2.8 301 85-414 138-457 (483)
52 COG5238 RNA1 Ran GTPase-activa 98.1 4.8E-07 1E-11 86.7 0.1 157 430-587 88-285 (388)
53 KOG4579 Leucine-rich repeat (L 98.1 1.7E-07 3.8E-12 80.4 -3.4 133 481-619 28-165 (177)
54 KOG4341 F-box protein containi 98.0 2.9E-07 6.3E-12 93.6 -4.0 281 59-349 138-437 (483)
55 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.5E-11 75.4 -2.7 111 476-589 49-161 (177)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 55.1 3.6 38 110-148 1-38 (44)
57 PRK15386 type III secretion pr 97.8 8.2E-05 1.8E-09 78.2 8.7 15 382-396 51-65 (426)
58 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 54.4 3.0 39 550-589 1-39 (44)
59 KOG3665 ZYG-1-like serine/thre 97.6 3.2E-05 6.9E-10 88.4 3.3 136 59-203 122-263 (699)
60 KOG3665 ZYG-1-like serine/thre 97.6 3.8E-05 8.3E-10 87.7 3.0 134 110-252 122-264 (699)
61 PRK15386 type III secretion pr 97.6 0.00022 4.7E-09 75.1 8.2 52 361-419 53-104 (426)
62 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.7E-09 66.8 5.9 84 361-447 43-126 (233)
63 KOG1644 U2-associated snRNP A' 97.5 0.00013 2.7E-09 67.6 5.1 124 483-610 22-150 (233)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00058 1.3E-08 66.2 2.9 62 83-147 41-104 (260)
65 PF13306 LRR_5: Leucine rich r 96.9 0.0023 5E-08 57.2 6.7 37 162-199 8-44 (129)
66 PF13306 LRR_5: Leucine rich r 96.9 0.0027 5.8E-08 56.8 7.0 122 185-313 7-128 (129)
67 KOG2739 Leucine-rich acidic nu 96.7 0.00084 1.8E-08 65.1 2.3 40 549-588 90-130 (260)
68 KOG2123 Uncharacterized conser 96.6 0.00034 7.4E-09 67.9 -1.1 87 310-401 18-106 (388)
69 KOG1947 Leucine rich repeat pr 96.5 0.00076 1.6E-08 75.9 0.4 132 83-221 186-328 (482)
70 KOG1947 Leucine rich repeat pr 96.4 0.0008 1.7E-08 75.7 0.2 237 133-396 187-440 (482)
71 KOG2123 Uncharacterized conser 96.0 0.00045 9.7E-09 67.1 -4.2 81 337-419 18-98 (388)
72 KOG4308 LRR-containing protein 95.6 0.00018 3.9E-09 78.8 -9.7 189 112-325 89-304 (478)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.0045 9.7E-08 35.8 0.5 19 703-722 2-20 (22)
74 KOG4308 LRR-containing protein 94.6 0.00071 1.5E-08 74.2 -8.7 82 506-587 205-303 (478)
75 PF00560 LRR_1: Leucine Rich R 94.5 0.021 4.5E-07 33.0 1.2 22 678-700 1-22 (22)
76 smart00370 LRR Leucine-rich re 92.7 0.11 2.4E-06 31.3 2.4 23 599-622 1-23 (26)
77 smart00369 LRR_TYP Leucine-ric 92.7 0.11 2.4E-06 31.3 2.4 23 599-622 1-23 (26)
78 PF13504 LRR_7: Leucine rich r 92.3 0.079 1.7E-06 28.3 1.1 13 601-613 2-14 (17)
79 KOG0473 Leucine-rich repeat pr 92.0 0.0061 1.3E-07 57.9 -5.7 82 58-145 41-122 (326)
80 smart00370 LRR Leucine-rich re 90.5 0.23 5E-06 29.9 2.1 21 550-570 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 90.5 0.23 5E-06 29.9 2.1 21 550-570 2-22 (26)
82 KOG3864 Uncharacterized conser 90.1 0.047 1E-06 51.2 -1.8 83 238-320 101-185 (221)
83 KOG3864 Uncharacterized conser 83.9 0.22 4.8E-06 46.8 -1.1 91 549-639 100-190 (221)
84 PF13516 LRR_6: Leucine Rich r 83.7 0.43 9.4E-06 28.0 0.5 20 701-720 2-21 (24)
85 KOG0473 Leucine-rich repeat pr 83.3 0.05 1.1E-06 51.9 -5.6 79 507-587 44-124 (326)
86 KOG4242 Predicted myosin-I-bin 80.1 11 0.00024 40.4 9.4 63 111-178 215-280 (553)
87 TIGR00864 PCC polycystin catio 75.9 1.5 3.3E-05 57.0 2.0 44 580-625 1-44 (2740)
88 KOG4242 Predicted myosin-I-bin 75.4 13 0.00029 39.8 8.4 42 385-426 415-457 (553)
89 smart00365 LRR_SD22 Leucine-ri 71.6 3.3 7.1E-05 25.0 1.7 13 551-563 3-15 (26)
90 KOG3763 mRNA export factor TAP 71.0 2 4.4E-05 46.7 1.3 37 549-587 243-283 (585)
91 smart00364 LRR_BAC Leucine-ric 70.5 2.9 6.4E-05 25.1 1.4 18 600-618 2-19 (26)
92 PF08693 SKG6: Transmembrane a 68.9 5.4 0.00012 26.8 2.5 19 746-764 17-36 (40)
93 smart00368 LRR_RI Leucine rich 59.8 6.7 0.00015 24.0 1.6 15 550-564 2-16 (28)
94 KOG3763 mRNA export factor TAP 55.1 6.8 0.00015 42.9 1.7 37 134-176 218-254 (585)
95 smart00367 LRR_CC Leucine-rich 41.5 20 0.00043 21.4 1.6 15 262-276 2-16 (26)
96 TIGR00864 PCC polycystin catio 30.6 31 0.00068 45.7 2.3 32 556-587 1-32 (2740)
97 PTZ00382 Variant-specific surf 22.7 79 0.0017 26.3 2.6 13 752-764 78-90 (96)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-64 Score=610.82 Aligned_cols=559 Identities=35% Similarity=0.554 Sum_probs=397.8
Q ss_pred cHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCcEEEEEcCCCCCccccCCcccccc
Q 047451 4 HDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDCCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQ 83 (778)
Q Consensus 4 ~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~ 83 (778)
+++|++||++||+++.++.+ .+.+|+. ..+||.|.||.|++ .++|+.|+|+++.+.|..+. .+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~---------~~~~w~~---~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK---------YLSNWNS---SADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc---------cCCCCCC---CCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhC
Confidence 56899999999999965432 6789976 67899999999986 47999999999999988876 8999
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhc-CCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHh
Q 047451 84 LVHLQRLSLFDNNFNFSEIPSEIL-NFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLA 162 (778)
Q Consensus 84 l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~ 162 (778)
+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++|.++ +.+|..+
T Consensus 92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~--------~~~p~~~ 160 (968)
T PLN00113 92 LPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS--------GEIPNDI 160 (968)
T ss_pred CCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc--------ccCChHH
Confidence 99999999999998765 776654 899999999999999888775 56889999999999653 3567778
Q ss_pred hcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCC
Q 047451 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLE 241 (778)
Q Consensus 163 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~ 241 (778)
+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.++++|++|++++| .+.+..+ .+.++++|+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLN 239 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC-ccCCcCChhHhcCCCCC
Confidence 88999999999999888888888889999999999999888888888888888888888887 5554444 667777777
Q ss_pred EEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccc
Q 047451 242 DLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDS 321 (778)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (778)
+|++++|.+++.+|..+.++++|++|++++ |.+.+..|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ-NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcC-CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 777777777777777777777777777776 6666666666666777777777777766666666666666666666666
Q ss_pred ccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCch
Q 047451 322 NFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPE 401 (778)
Q Consensus 322 ~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~ 401 (778)
.+.+..|. .+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|++.+.+|.
T Consensus 319 ~~~~~~~~---~~~~l~~L~~L~L~~n~l~~---------------------~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 319 NFTGKIPV---ALTSLPRLQVLQLWSNKFSG---------------------EIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred ccCCcCCh---hHhcCCCCCEEECcCCCCcC---------------------cCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 66655554 44444555555544444332 2333455555566666666655555554
Q ss_pred hHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCc
Q 047451 402 WLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNG 481 (778)
Q Consensus 402 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~ 481 (778)
.+. .+ ++|+.|++++|++. +.+|..+..+++
T Consensus 375 ~~~--~~-------------------------~~L~~L~l~~n~l~----------------------~~~p~~~~~~~~ 405 (968)
T PLN00113 375 GLC--SS-------------------------GNLFKLILFSNSLE----------------------GEIPKSLGACRS 405 (968)
T ss_pred hHh--Cc-------------------------CCCCEEECcCCEec----------------------ccCCHHHhCCCC
Confidence 443 22 33444444444433 344555555666
Q ss_pred ccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCC
Q 047451 482 LYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLG 558 (778)
Q Consensus 482 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls 558 (778)
|+.|++++|++++.+|..+..++ +|+.|++++|.+++.++..+..+++|+.|++++|++ .|..+ ..++|+.|+++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls 483 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLP-LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLS 483 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCC-CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECc
Confidence 66666666666655665555555 466666666666666555555666666666666665 33333 34677777777
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccc
Q 047451 559 DNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYL 638 (778)
Q Consensus 559 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l 638 (778)
+|++++..|..+.++++|+.|++++|++.+.+|..+ ..+++|++|++++|.++|.+|.. |..
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~-~~~--------------- 545 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL--SSCKKLVSLDLSHNQLSGQIPAS-FSE--------------- 545 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCChHH--cCccCCCEEECCCCcccccCChh-HhC---------------
Confidence 777777777777777777777777777777766655 56777777777777777777743 221
Q ss_pred cccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCccccccc
Q 047451 639 QDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQVFLS 718 (778)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~p 718 (778)
++.|+.||+++|+++|.+|..++.++.|+.+++++|++.|.+|
T Consensus 546 -------------------------------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 546 -------------------------------------MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred -------------------------------------cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 2356677777777777777777777777777777777777777
Q ss_pred hh
Q 047451 719 PF 720 (778)
Q Consensus 719 ~~ 720 (778)
..
T Consensus 589 ~~ 590 (968)
T PLN00113 589 ST 590 (968)
T ss_pred Cc
Confidence 53
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6e-56 Score=538.67 Aligned_cols=498 Identities=32% Similarity=0.494 Sum_probs=376.8
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhh-CCCCCCEEECcCCCCCcccccccCCchhHHhh
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELL-ELSNLEVLDLSFNTFDNFFLKLQKPGLANLAE 163 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~ 163 (778)
.+++.|+|++|.+.+. ++..+..+++|++|+|++|++.+.+|..+. .+++|++|++++|.++. .+|. +
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~--------~~p~--~ 137 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--------SIPR--G 137 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc--------ccCc--c
Confidence 4788999999988766 688889999999999999999888887654 88999999999986532 2222 4
Q ss_pred cCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCE
Q 047451 164 NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLED 242 (778)
Q Consensus 164 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~ 242 (778)
.+++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|..+.++++|++|++++| .+.+..| .+..+++|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN-QLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC-CCcCcCChHHcCcCCccE
Confidence 5778888888888888888888888888888888888887778888888888888887777 4444444 5666666666
Q ss_pred EeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccc
Q 047451 243 LRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSN 322 (778)
Q Consensus 243 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (778)
|++++|.+++.+|..+..+++|++|++++ |.+.+..|..++.+++|+.|++++|.+.+..|..+.++++|++|++++|.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 66666666666666666666666666665 55655666666666666666666666665555555555566666665555
Q ss_pred cCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchh
Q 047451 323 FSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEW 402 (778)
Q Consensus 323 l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~ 402 (778)
+.+..|. .+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+.+|..
T Consensus 296 l~~~~p~---~~~~l~~L~~L~l~~n~~~~---------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 296 LSGEIPE---LVIQLQNLEILHLFSNNFTG---------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred eccCCCh---hHcCCCCCcEEECCCCccCC---------------------cCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 5554444 33444444444444443322 12333444555555555555555444443
Q ss_pred HHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcc
Q 047451 403 LFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGL 482 (778)
Q Consensus 403 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L 482 (778)
+. .+++|+.|++++|++ ++.+|..+..+++|
T Consensus 352 l~---------------------------~~~~L~~L~Ls~n~l----------------------~~~~p~~~~~~~~L 382 (968)
T PLN00113 352 LG---------------------------KHNNLTVLDLSTNNL----------------------TGEIPEGLCSSGNL 382 (968)
T ss_pred Hh---------------------------CCCCCcEEECCCCee----------------------EeeCChhHhCcCCC
Confidence 32 224455555554444 44677788889999
Q ss_pred cccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCC
Q 047451 483 YALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGD 559 (778)
Q Consensus 483 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~ 559 (778)
+.|++++|++.+.+|..+..++ +|+.|++++|.+++..|..|..+++|+.|++++|.+ .|..+..+++|+.|++++
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACR-SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CEEECcCCEecccCCHHHhCCC-CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 9999999999999999999988 799999999999999999999999999999999999 677788999999999999
Q ss_pred CcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCccccc
Q 047451 560 NQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQ 639 (778)
Q Consensus 560 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~ 639 (778)
|++.+..|..+ ..++|+.|++++|++++..|..+ ..+++|+.|++++|++++.+|.. +.+
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~-~~~---------------- 521 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKL--GSLSELMQLKLSENKLSGEIPDE-LSS---------------- 521 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhh--hhhhccCEEECcCCcceeeCChH-HcC----------------
Confidence 99999888766 45899999999999999888766 78999999999999999999965 221
Q ss_pred ccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCccccccch
Q 047451 640 DSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQVFLSP 719 (778)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~p~ 719 (778)
++.|+.|++++|.++|.+|..|+.+++|+.||+++|+++|.+|.
T Consensus 522 ------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 522 ------------------------------------CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ------------------------------------ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 34688899999999999999999999999999999999999999
Q ss_pred hhhccc
Q 047451 720 FFIDFF 725 (778)
Q Consensus 720 ~~~~~~ 725 (778)
.+..+.
T Consensus 566 ~l~~l~ 571 (968)
T PLN00113 566 NLGNVE 571 (968)
T ss_pred hHhcCc
Confidence 876553
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-38 Score=326.05 Aligned_cols=402 Identities=23% Similarity=0.265 Sum_probs=240.0
Q ss_pred CEEECCCCCCCccCchhhhCC--CCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCC
Q 047451 113 THLNLSRSYFSGQIPAELLEL--SNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS 190 (778)
Q Consensus 113 ~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 190 (778)
+.||.+++.+.......+... ..-+.||+++|++.++. +..|.++++|+.+++.+|.++ .+|.......
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id--------~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sg 125 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHID--------FEFFYNLPNLQEVNLNKNELT-RIPRFGHESG 125 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCc--------HHHHhcCCcceeeeeccchhh-hccccccccc
Confidence 456777766653222222221 22344666666554431 224445555555555555544 2344333334
Q ss_pred CCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEecc
Q 047451 191 SLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLS 270 (778)
Q Consensus 191 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 270 (778)
+|+.|+|.+|.|+..-.+++..++. |+.|||+.|.|+......|..-.++++|+|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~a------------------------lrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPA------------------------LRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhh------------------------hhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 4555555555554444444444444 4444444444444444444444555555555
Q ss_pred CCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCC
Q 047451 271 GGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNL 350 (778)
Q Consensus 271 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l 350 (778)
+ |.++..-...|..+.+|..|.|++|+++...+..|.++++|+.|+|..|++....-. .|.++++|+.|.+..|.+
T Consensus 182 ~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l---tFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 182 S-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL---TFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred c-ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh---hhcCchhhhhhhhhhcCc
Confidence 5 555555555566666667777777777666666666677777777777666532111 344444444444444443
Q ss_pred CcCCCCCCCcccceeeccccCCCCCC-chhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCC
Q 047451 351 NEPLLVPNTQKFEIIGLRSCNLSEFP-SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLP 429 (778)
Q Consensus 351 ~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 429 (778)
. .+. ..|..+.++++|+|+.|+++..-..+++ ++++|+.|++|+|.|..+.
T Consensus 258 ~----------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih---- 309 (873)
T KOG4194|consen 258 S----------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIH---- 309 (873)
T ss_pred c----------------------cccCcceeeecccceeecccchhhhhhccccc--ccchhhhhccchhhhheee----
Confidence 3 222 2355566666666666666544444444 5544444444444443332
Q ss_pred CCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccE
Q 047451 430 VLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWV 509 (778)
Q Consensus 430 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~ 509 (778)
++++..+++|+.|+|++|+|+...++.|..+. .|++
T Consensus 310 -------------------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~ 345 (873)
T KOG4194|consen 310 -------------------------------------------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEE 345 (873)
T ss_pred -------------------------------------------cchhhhcccceeEeccccccccCChhHHHHHH-Hhhh
Confidence 33455556666666666666655555555555 5777
Q ss_pred EECCCCcccccCcccccCCCCccEEECCCCcc------ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccC
Q 047451 510 LKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL------VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKS 583 (778)
Q Consensus 510 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l------~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 583 (778)
|+|++|+++.+-..+|..+++|++|||++|.+ ....|.++++|+.|++.+|++..+...+|.++++|+.|||.+
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCC
Confidence 77777777666666677777777777777776 345678888899999999999888888899999999999999
Q ss_pred ccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhcccc
Q 047451 584 NNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNA 626 (778)
Q Consensus 584 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~ 626 (778)
|.|..+-+..| ..+ .|+.|-+..-.|-|.|.-.||..|--
T Consensus 426 NaiaSIq~nAF--e~m-~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 426 NAIASIQPNAF--EPM-ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred Ccceeeccccc--ccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence 99888877766 455 88888888888888888888888853
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-37 Score=318.84 Aligned_cols=362 Identities=23% Similarity=0.262 Sum_probs=296.6
Q ss_pred CCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccc
Q 047451 239 PLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTI 318 (778)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (778)
.-+.|++++|.+....+..|.++++|+++++.. |.++ .+|.......+|+.|+|.+|.|......++..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeecc-chhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 345688888888888888888888888888876 6665 45655555566888899888888887888888888899999
Q ss_pred cccccCCCCCcchhhhcCCCCCcEEecCCCCCCc--CCCCCCCcccceeeccccCCCCCC-chhcccccccEEeccCCcC
Q 047451 319 SDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNE--PLLVPNTQKFEIIGLRSCNLSEFP-SFLHNQDQLISLDLSSNMI 395 (778)
Q Consensus 319 ~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l 395 (778)
+.|.++.+... .+..-.++++|++++|.++. ...+..+.+|..|.|+.|.++.+| ..|..+++|+.|+|..|+|
T Consensus 157 SrN~is~i~~~---sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 157 SRNLISEIPKP---SFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhchhhcccCC---CCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 98888866554 55566788888888888875 444556778888888888888888 4667789999999999988
Q ss_pred CCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchh
Q 047451 396 AGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPS 475 (778)
Q Consensus 396 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~ 475 (778)
. +-++..+.++++|+.|.+..|.+..+..+ .|..+.++++|+|+.|+++. .-.++
T Consensus 234 r--ive~ltFqgL~Sl~nlklqrN~I~kL~DG-~Fy~l~kme~l~L~~N~l~~----------------------vn~g~ 288 (873)
T KOG4194|consen 234 R--IVEGLTFQGLPSLQNLKLQRNDISKLDDG-AFYGLEKMEHLNLETNRLQA----------------------VNEGW 288 (873)
T ss_pred e--eehhhhhcCchhhhhhhhhhcCcccccCc-ceeeecccceeecccchhhh----------------------hhccc
Confidence 4 33444445888888888888888887776 46667788888888777663 34467
Q ss_pred hhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCC
Q 047451 476 ICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKL 552 (778)
Q Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L 552 (778)
+.+++.|+.|++|+|.|...-++.+.-.+ +|++|+|++|+|+...+..|..+..|++|+|++|++ ....|.++.+|
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 88999999999999999977777776666 799999999999999999999999999999999999 56789999999
Q ss_pred CEEeCCCCcCCCCCc---ccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccc
Q 047451 553 KFLDLGDNQITDFFP---SWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKD 629 (778)
Q Consensus 553 ~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~ 629 (778)
++|||++|.++..+. ..|.++++|+.|++.+|++..+....| .+++.|++|||.+|.|. +|....|..+ .|++
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf--sgl~~LE~LdL~~Naia-SIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF--SGLEALEHLDLGDNAIA-SIQPNAFEPM-ELKE 443 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh--ccCcccceecCCCCcce-eecccccccc-hhhh
Confidence 999999999987654 468899999999999999998876665 89999999999999998 6777779988 8888
Q ss_pred cccCCc
Q 047451 630 VNANNL 635 (778)
Q Consensus 630 l~~~~~ 635 (778)
|-++..
T Consensus 444 Lv~nSs 449 (873)
T KOG4194|consen 444 LVMNSS 449 (873)
T ss_pred hhhccc
Confidence 877643
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-39 Score=318.99 Aligned_cols=479 Identities=25% Similarity=0.325 Sum_probs=332.8
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhh
Q 047451 84 LVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAE 163 (778)
Q Consensus 84 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~ 163 (778)
-..+..|++++|.+.. +.+.+.++..|.+|++++|.+. .+|++++.+..++.++.++|++ ..+|+.+.
T Consensus 44 qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l---------s~lp~~i~ 111 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL---------SELPEQIG 111 (565)
T ss_pred hcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH---------hhccHHHh
Confidence 3457788899998743 5677888889999999999988 7888899999999999999865 45666677
Q ss_pred cCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEE
Q 047451 164 NLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDL 243 (778)
Q Consensus 164 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 243 (778)
.+.+|+.++.++|.+.. .|+.++.+-.|+.++..+|+++ ..|++++.+.+|..+++.+|
T Consensus 112 s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n------------------- 170 (565)
T KOG0472|consen 112 SLISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN------------------- 170 (565)
T ss_pred hhhhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc-------------------
Confidence 77777777777777653 4455666666777777777666 55666666666665555555
Q ss_pred eccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccccc
Q 047451 244 RLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNF 323 (778)
Q Consensus 244 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (778)
++....|..+. ++.|++|+... |. -+.+|+.++.+.+|+.|++..|++. ..| .|.++..|++++++.|++
T Consensus 171 -----~l~~l~~~~i~-m~~L~~ld~~~-N~-L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 171 -----KLKALPENHIA-MKRLKHLDCNS-NL-LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred -----chhhCCHHHHH-HHHHHhcccch-hh-hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH
Confidence 44423233222 55555555543 32 2345555666666666666666665 334 466666666666666666
Q ss_pred CCCCCcchhhhcCCCCCcEEecCCCCCCcCCC-CCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchh
Q 047451 324 SGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLL-VPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEW 402 (778)
Q Consensus 324 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~ 402 (778)
.-...+ .+..++++..||+.+|++.+... ...+.+|++||+++|.++.+|..++++ .|+.|-+.+|.+. .+-..
T Consensus 241 ~~lpae---~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ 315 (565)
T KOG0472|consen 241 EMLPAE---HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRRE 315 (565)
T ss_pred HhhHHH---HhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHH
Confidence 533322 44566666667777766665222 224566778888888888888888888 8888888888775 22222
Q ss_pred HHhcC----CCCccEE----eccCCcccccc----CC---CCCCCCCCCCEEEcCCCcCcCCCCchh----hcccceeEe
Q 047451 403 LFSAG----TNSLQYL----NLSYNLLMHFE----HN---LPVLPWNNLGALDLRFNKLQGPLPIPI----SVLTSSYLV 463 (778)
Q Consensus 403 ~~~~~----~~~L~~L----~Ls~n~l~~~~----~~---~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~~l~~L~l 463 (778)
+...+ ++.|+.- -++.-.-.... +. .......+.+.|++++-+++......| ..-++..++
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 22111 1111110 01111000000 00 011223567888999888886555555 233788999
Q ss_pred cCCccccCCchhhhcCCcccc-cccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-
Q 047451 464 SNNQLTGEIPPSICSLNGLYA-LDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL- 541 (778)
Q Consensus 464 ~~n~l~~~~~~~~~~l~~L~~-L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 541 (778)
+.|++. ++|..+..+..+.+ +.+++|.++ .+|..+..++ +|..|+|++|.+- .+|..++.+..|++||++.|++
T Consensus 396 skNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~-kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 396 SKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQ-KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred ccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhh-cceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence 999998 78888877776654 556666665 7888888888 7999999999988 5788889999999999999999
Q ss_pred -ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 542 -VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 542 -~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
.|..+..+..|+.+-.++|++..+.++.+.++.+|.+|||.+|.+..++| .. +++.+|++|++++|+|. .|..
T Consensus 472 ~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp-~L--gnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 472 MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP-IL--GNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh-hh--ccccceeEEEecCCccC--CCHH
Confidence 99999999999999999999999999999999999999999999997654 34 89999999999999998 6654
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-39 Score=318.95 Aligned_cols=470 Identities=27% Similarity=0.369 Sum_probs=354.4
Q ss_pred EEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEE
Q 047451 61 VVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLD 140 (778)
Q Consensus 61 v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 140 (778)
++.+.+++|.+....+ ++.++..+.+|++.+|++. ++|++++.+..++.|+.++|+++ .+|..+..+.+|+.|+
T Consensus 47 l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhccH---hhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 5678888887754433 7888999999999999884 47999999999999999999998 8899999999999999
Q ss_pred CcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEe
Q 047451 141 LSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLG 220 (778)
Q Consensus 141 Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 220 (778)
.++|.+ ..+++.++.+..|+.++..+|+++. .|.++..+.+|..+++.+|++. ..|+..-.++.|++++
T Consensus 121 ~s~n~~---------~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 121 CSSNEL---------KELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLD 189 (565)
T ss_pred ccccce---------eecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcc
Confidence 999965 4577888899999999999999874 6777888999999999999998 5555555599999999
Q ss_pred cccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccc-cCCCCCCeeccccccc
Q 047451 221 VMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSI-GNLASLKTLEISSFNF 299 (778)
Q Consensus 221 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l 299 (778)
...| .+...++.++.+.+|+.|++..|++. ..| .|..|..|+++++.. |++.- +|... .+++++..||+.+|++
T Consensus 190 ~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~-N~i~~-lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 190 CNSN-LLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGE-NQIEM-LPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred cchh-hhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcc-cHHHh-hHHHHhcccccceeeecccccc
Confidence 9888 66666668999999999999999987 555 788999999999986 76664 45444 4889999999999999
Q ss_pred CCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCc----CCCCCCCcccceee-------cc
Q 047451 300 SGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNE----PLLVPNTQKFEIIG-------LR 368 (778)
Q Consensus 300 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~~L~~L~-------L~ 368 (778)
+ ..|+.+.-+++|++||+++|.+++..+ .++++ +|+.|-+.+|.+.. .+......-|++|. ++
T Consensus 265 k-e~Pde~clLrsL~rLDlSNN~is~Lp~----sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS 338 (565)
T KOG0472|consen 265 K-EVPDEICLLRSLERLDLSNNDISSLPY----SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLS 338 (565)
T ss_pred c-cCchHHHHhhhhhhhcccCCccccCCc----ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCC
Confidence 8 668888889999999999999987655 57888 89999999997652 11111111112211 11
Q ss_pred ccC---CC--CCC----chhcccccccEEeccCCcCCCCCchhHHhc-CCCCccEEeccCCccccccCCCCCCCCCCCCE
Q 047451 369 SCN---LS--EFP----SFLHNQDQLISLDLSSNMIAGKIPEWLFSA-GTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGA 438 (778)
Q Consensus 369 ~n~---l~--~lp----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 438 (778)
... -+ ..+ .........+.|++++-+++ .+|+..|.+ .-.-....+++.|++..++....... .-.+.
T Consensus 339 ~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lk-elvT~ 416 (565)
T KOG0472|consen 339 QSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELK-ELVTD 416 (565)
T ss_pred CCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHH-HHHHH
Confidence 111 00 111 12344567889999999998 777766532 22347889999999988876421110 11122
Q ss_pred EEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCccc
Q 047451 439 LDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFH 518 (778)
Q Consensus 439 L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 518 (778)
+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+. .|+.|+++.|++.
T Consensus 417 l~lsnn~is-----------------------fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 417 LVLSNNKIS-----------------------FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-RLQTLNLSFNRFR 471 (565)
T ss_pred HHhhcCccc-----------------------cchHHHHhhhcceeeecccchhh-hcchhhhhhh-hhheecccccccc
Confidence 334444433 56777788888888888888777 6788888777 5888888888877
Q ss_pred ccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccc
Q 047451 519 GFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFH 587 (778)
Q Consensus 519 ~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 587 (778)
..|+.+..+..++.+-.++|++ .|..+.++.+|.+|||.+|.+..+ |..++++++|+.|++++|+|+
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 6677777777777777788888 455588888888888888888764 557888888888888888887
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-37 Score=332.10 Aligned_cols=480 Identities=25% Similarity=0.295 Sum_probs=334.9
Q ss_pred CCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCC
Q 047451 87 LQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLT 166 (778)
Q Consensus 87 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~ 166 (778)
+..|+++.|-+.... -+.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.| ...|....++.
T Consensus 23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i---------~~vp~s~~~~~ 91 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI---------RSVPSSCSNMR 91 (1081)
T ss_pred HHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH---------hhCchhhhhhh
Confidence 555555555442211 122233333555555555554 4455555555555555555543 22334444555
Q ss_pred CCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEecc
Q 047451 167 NLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLS 246 (778)
Q Consensus 167 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 246 (778)
+|++++|.+|.+. ..|..+..+++|++|+++.|.+. .+|..+..++.+. .+..+
T Consensus 92 ~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~------------------------~~~~s 145 (1081)
T KOG0618|consen 92 NLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEE------------------------ELAAS 145 (1081)
T ss_pred cchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHH------------------------HHhhh
Confidence 5555555554443 34444555555555555555544 3444444444444 44444
Q ss_pred CCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCC
Q 047451 247 YTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGP 326 (778)
Q Consensus 247 ~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (778)
+|......+ ... ++.+++.. +.+.+.++.....+.. .|+|++|.+. . ..+..+++|+.+....|++...
T Consensus 146 ~N~~~~~lg----~~~-ik~~~l~~-n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l 214 (1081)
T KOG0618|consen 146 NNEKIQRLG----QTS-IKKLDLRL-NVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL 214 (1081)
T ss_pred cchhhhhhc----ccc-chhhhhhh-hhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE
Confidence 441111111 111 55555655 5555555555555544 6888888776 2 2366778888888888877643
Q ss_pred CCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhc
Q 047451 327 MSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSA 406 (778)
Q Consensus 327 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 406 (778)
.. .-++++.|+.++|.++.........+++++++++|++..+|+|+..+.+|+.++..+|+++ .+|..++
T Consensus 215 ~~-------~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-- 284 (1081)
T KOG0618|consen 215 EI-------SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS-- 284 (1081)
T ss_pred Ee-------cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh--
Confidence 22 3478999999999988766677888999999999999999999999999999999999996 7888877
Q ss_pred CCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchh---hcccceeEecCCccccCCchhhhcCCccc
Q 047451 407 GTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPI---SVLTSSYLVSNNQLTGEIPPSICSLNGLY 483 (778)
Q Consensus 407 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~ 483 (778)
...+|+.|.+..|.+..+++. ..++.+|++|+|..|++....+..+ ...+..+..+.|++.......=...+.|+
T Consensus 285 ~~~~L~~l~~~~nel~yip~~--le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNELEYIPPF--LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhHHHHHhhhhhhhhCCCc--ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 789999999999999998874 4456899999999999986655443 33466677777777633221223456799
Q ss_pred ccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCc
Q 047451 484 ALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQ 561 (778)
Q Consensus 484 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~ 561 (778)
.|++.+|.+++.....+.+.. +|+.|+|++|++.......+.++..|++|+||+|++ +|..+..+..|++|...+|+
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~ 441 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ 441 (1081)
T ss_pred HHHHhcCcccccchhhhcccc-ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc
Confidence 999999999988777777777 799999999999977778899999999999999999 99999999999999999999
Q ss_pred CCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhcccccccccc
Q 047451 562 ITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNA 632 (778)
Q Consensus 562 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~ 632 (778)
+... | .+..++.|+.+|+|.|.++...-... ...++|++||+++|.-. ......|..+..+...+.
T Consensus 442 l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~--~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 442 LLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEA--LPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred eeec-h-hhhhcCcceEEecccchhhhhhhhhh--CCCcccceeeccCCccc-ccchhhhHHhhhhhheec
Confidence 9875 5 78999999999999999986643322 12379999999999964 566666776666654443
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=3.7e-35 Score=317.50 Aligned_cols=484 Identities=26% Similarity=0.303 Sum_probs=351.1
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEE
Q 047451 60 HVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVL 139 (778)
Q Consensus 60 ~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 139 (778)
.++.|+++.|.+... | .....+.-+|+.||+++|.+.. .|..+..+.+|+.|+++.|.|. ..|.+..++++|++|
T Consensus 22 ~~~~ln~~~N~~l~~-p-l~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSR-P-LEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHHhhhccccccccC-c-hHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhh
Confidence 477888888765321 1 2244555569999999999854 6888999999999999999998 788999999999999
Q ss_pred ECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEE
Q 047451 140 DLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFL 219 (778)
Q Consensus 140 ~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 219 (778)
+|..|.. ..+|..+..+++|++|++++|.+. .+|..+..+..++.+..++|..... ++... .+.+
T Consensus 97 nL~~n~l---------~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~ 161 (1081)
T KOG0618|consen 97 NLKNNRL---------QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKL 161 (1081)
T ss_pred eeccchh---------hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhh
Confidence 9999965 567889999999999999999986 6788899999999999999932212 22222 7777
Q ss_pred ecccCCCCcccCC-CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccc
Q 047451 220 GVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFN 298 (778)
Q Consensus 220 ~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 298 (778)
++..| ...+.+. ....+.. .|+|.+|.+. -..+..+++|+.+.... |++.... -..++++.|+.+.|.
T Consensus 162 ~l~~n-~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~r-n~ls~l~----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 162 DLRLN-VLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCER-NQLSELE----ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhh-hcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhh-cccceEE----ecCcchheeeeccCc
Confidence 77777 3333333 5555554 6999999886 23466788888888876 7665332 124689999999999
Q ss_pred cCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcC-CCCCCCcccceeeccccCCCCCCc
Q 047451 299 FSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEP-LLVPNTQKFEIIGLRSCNLSEFPS 377 (778)
Q Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~lp~ 377 (778)
++...+. ..-.+|++++++.|++++.. + |+..+.+|+.++..+|.++.. .......+|+.+.+..|.+..+|+
T Consensus 231 l~~~~~~--p~p~nl~~~dis~n~l~~lp-~---wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~ 304 (1081)
T KOG0618|consen 231 LTTLDVH--PVPLNLQYLDISHNNLSNLP-E---WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP 304 (1081)
T ss_pred ceeeccc--cccccceeeecchhhhhcch-H---HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC
Confidence 8843322 22357999999999998654 5 888999999999999998542 222366788999999999999998
Q ss_pred hhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcc
Q 047451 378 FLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVL 457 (778)
Q Consensus 378 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 457 (778)
.....+.|++|||..|++. ..|+.++..-..+++.|+.+.|++...+.. .....+.
T Consensus 305 ~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-----------------------~e~~~~~ 360 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSY-----------------------EENNHAA 360 (1081)
T ss_pred cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccc-----------------------cchhhHH
Confidence 8888999999999999987 677765532333466666666665544311 0111445
Q ss_pred cceeEecCCccccCCchhhhcCCcccccccccccccccCCh-hhccccccccEEECCCCcccccCcccccCCCCccEEEC
Q 047451 458 TSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPA-CLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDF 536 (778)
Q Consensus 458 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 536 (778)
|+.|++.+|.++...-+.+.+.+.|+.|+|++|++. .+|. .+.++. .|++|+||+|+++ .+|.....+..|++|..
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle-~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE-ELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchH-HhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 666666666666666667777888888888888887 4554 455565 6888888888888 45677888888888888
Q ss_pred CCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCC
Q 047451 537 SNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHN 610 (778)
Q Consensus 537 ~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N 610 (778)
.+|++ .| .+..++.|+.+|+|.|.++...-..-..-++|++||+++|.=....... +..+.++...++.-|
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~--l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT--LKVLKSLSQMDITLN 510 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhh--hHHhhhhhheecccC
Confidence 88888 66 7788888888888888887653332223378888888888732221112 244555555555555
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-32 Score=283.29 Aligned_cols=370 Identities=25% Similarity=0.367 Sum_probs=242.5
Q ss_pred CCCCCEEECCCCCCC-ccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhc
Q 047451 109 FSRLTHLNLSRSYFS-GQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLA 187 (778)
Q Consensus 109 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 187 (778)
++-.+-.|+++|.++ +..|.....++.++.|.|...++ ..+|+.++.+.+|++|.+++|++.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L---------~~vPeEL~~lqkLEHLs~~HN~L~-------- 68 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL---------EQVPEELSRLQKLEHLSMAHNQLI-------- 68 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh---------hhChHHHHHHhhhhhhhhhhhhhH--------
Confidence 445566677777776 35666677777777777766643 334555555555555555555544
Q ss_pred CCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEeccCCcCCccCcccccCCCCCCe
Q 047451 188 NLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLED 266 (778)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 266 (778)
.+...+..++.|+.+.+.+|......+| .+..+..|+.|||++|++. ..|..+...+++-.
T Consensus 69 -----------------~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 69 -----------------SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIV 130 (1255)
T ss_pred -----------------hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEE
Confidence 2333344444444444444433333333 4445555555555555555 55666666666666
Q ss_pred EeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecC
Q 047451 267 LYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFP 346 (778)
Q Consensus 267 L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 346 (778)
|+|++ |++..+....|.+++.|-.|||++|++. .+|.....+..|++|.|++|.+.... +..+..+++|+.|.++
T Consensus 131 LNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ---LrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 131 LNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ---LRQLPSMTSLSVLHMS 205 (1255)
T ss_pred EEccc-CccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH---HhcCccchhhhhhhcc
Confidence 66666 6565444444556777777777777776 44555777777788888777664221 1122333444444444
Q ss_pred CCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccC
Q 047451 347 NCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEH 426 (778)
Q Consensus 347 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 426 (778)
+.+-+ +..+|..+..+.+|..+|+|.|.+. .+|+.++ .+++|+.|++|+|+++.+..
T Consensus 206 ~TqRT--------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly--~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 206 NTQRT--------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY--KLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred cccch--------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHh--hhhhhheeccCcCceeeeec
Confidence 43322 2256667777778888888888876 6777777 77778888888877776654
Q ss_pred CCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccc-cCChhhccccc
Q 047451 427 NLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSG-MLPACLGNFSV 505 (778)
Q Consensus 427 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~ 505 (778)
. ...+.+|++|+++.|+++ .+|.++++++.|+.|++.+|+++- -+|..++.+.
T Consensus 263 ~--~~~W~~lEtLNlSrNQLt-----------------------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~- 316 (1255)
T KOG0444|consen 263 T--EGEWENLETLNLSRNQLT-----------------------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI- 316 (1255)
T ss_pred c--HHHHhhhhhhccccchhc-----------------------cchHHHhhhHHHHHHHhccCcccccCCccchhhhh-
Confidence 3 334467777777777776 788889999999999999998762 3778888887
Q ss_pred cccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcc
Q 047451 506 QLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPS 568 (778)
Q Consensus 506 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 568 (778)
+|+++..++|.+. ..|+.+..|..|+.|.|++|++ +|.++.-++.|+.||+..|.-.-.+|.
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 6888888888887 7888888888888888888888 788888888888888888876554443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=8e-31 Score=271.10 Aligned_cols=296 Identities=23% Similarity=0.330 Sum_probs=157.4
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhh
Q 047451 84 LVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAE 163 (778)
Q Consensus 84 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~ 163 (778)
++-.|-.|+++|.+++..+|..+..+++++.|.|....+. .+|..++.|.+|++|.+++|++. .+...++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~---------~vhGELs 75 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI---------SVHGELS 75 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH---------hhhhhhc
Confidence 3344455555555554445555556666666666555555 55555666666666666665432 2222344
Q ss_pred cCCCCCEEEccCccCCC-CcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCE
Q 047451 164 NLTNLKALDLINVHISS-TVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLED 242 (778)
Q Consensus 164 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 242 (778)
.++.|+.+.+..|++.. -+|..+-.+..|+.||||+|+++ ..|..+..-+++-+|+|++|.+-+..-+-|.+++.|-.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 45555555555555432 34555556666666666666666 56666666666666666666333333335555666666
Q ss_pred EeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccC-CchhhhccCCCCCCccccccc
Q 047451 243 LRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFS-GTLQASLGNLTQLDSLTISDS 321 (778)
Q Consensus 243 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n 321 (778)
|||++|++. ..|..+..+..|++|.|++ |.+.-.-...+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 666666665 4444555566666666665 4333222222333445555555554332 234555555556666666655
Q ss_pred ccCCCCCcchhhhcCCCCCcEEecCCCCCCcCC-CCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCC
Q 047451 322 NFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPL-LVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIA 396 (778)
Q Consensus 322 ~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 396 (778)
.+. ..|+ .+-.+++|+.|++++|+++... ......++++|+++.|+++.+|+.+..+++|+.|.+.+|+++
T Consensus 233 ~Lp-~vPe---cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 233 NLP-IVPE---CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred CCC-cchH---HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc
Confidence 554 2333 4444555555555555554311 112334555555555555555555555555555555555543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=3e-24 Score=212.16 Aligned_cols=392 Identities=19% Similarity=0.192 Sum_probs=225.6
Q ss_pred CCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccc-cccCCCCCcchhhhcCCCCCc
Q 047451 263 KLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISD-SNFSGPMSSSLSWLTNLNQLT 341 (778)
Q Consensus 263 ~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~l~~L~ 341 (778)
.-.+++|.. |+++...+..|+.+++|+.|||++|.|+.+.|.+|.++++|.+|-+.+ |+|+..... .|.+
T Consensus 68 ~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~---~F~g----- 138 (498)
T KOG4237|consen 68 ETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG---AFGG----- 138 (498)
T ss_pred cceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh---Hhhh-----
Confidence 344555555 555555555555555555555555555555555555555554444433 444433322 2222
Q ss_pred EEecCCCCCCcCCCCCCCcccceeeccccCCCCCC-chhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCc
Q 047451 342 SLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFP-SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNL 420 (778)
Q Consensus 342 ~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 420 (778)
+..++.|.+.-|++..++ +.|..++++..|.+.+|.+. .++...+ .++.+++.+.+..|.
T Consensus 139 -----------------L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf-~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 139 -----------------LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF-QGLAAIKTLHLAQNP 199 (498)
T ss_pred -----------------HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccc-cchhccchHhhhcCc
Confidence 222333333333333222 34555666666666666554 3333211 144444444444443
Q ss_pred cccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhh
Q 047451 421 LMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACL 500 (778)
Q Consensus 421 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 500 (778)
+..... ++.+.. + ....|..++...-..-..+.++++...-+..|
T Consensus 200 ~icdCn------L~wla~-~----------------------------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf 244 (498)
T KOG4237|consen 200 FICDCN------LPWLAD-D----------------------------LAMNPIETSGARCVSPYRLYYKRINQEDARKF 244 (498)
T ss_pred cccccc------cchhhh-H----------------------------HhhchhhcccceecchHHHHHHHhcccchhhh
Confidence 211100 000000 0 00122233444444445555665553333333
Q ss_pred ccccccccEEECCCCcccccC-cccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 047451 501 GNFSVQLWVLKLQGNKFHGFI-PETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPEL 576 (778)
Q Consensus 501 ~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 576 (778)
.....++..--.+.+...+.. ...|.++++|+.|+|++|++ .+.+|.+..++++|.|..|+|..+....|.++..|
T Consensus 245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL 324 (498)
T ss_pred hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence 332112222122333333333 35688899999999999988 67889999999999999999998888899999999
Q ss_pred CEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCC--c---ccccccCCCCCCCCCc
Q 047451 577 EVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANN--L---TYLQDSLLGPVSYPAY 651 (778)
Q Consensus 577 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~--~---~~l~~~~~~~~~~~~~ 651 (778)
++|+|.+|+|+.+.|..| ..+.+|.+|.+-.|++.|.+--.|++.|-.-+. ...+ + .++....++...++.+
T Consensus 325 ~tL~L~~N~it~~~~~aF--~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~ 401 (498)
T KOG4237|consen 325 KTLSLYDNQITTVAPGAF--QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDF 401 (498)
T ss_pred eeeeecCCeeEEEecccc--cccceeeeeehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhccccchhcccccc
Confidence 999999999999887776 788999999999999999999999999965544 2211 1 1222222222222111
Q ss_pred c-----------------ccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCccc
Q 047451 652 T-----------------HYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQ 714 (778)
Q Consensus 652 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~ 714 (778)
. .....+..+.++++....-+.++...-+++++.+|.++ .+|+. .+.+| .+|+|+|+++
T Consensus 402 ~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 402 RCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred ccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 0 11122334445555555555556666788999999999 67775 67778 8999999987
Q ss_pred cccchhhhcc
Q 047451 715 VFLSPFFIDF 724 (778)
Q Consensus 715 ~~~p~~~~~~ 724 (778)
..--.+|.++
T Consensus 478 ~Lsn~tf~n~ 487 (498)
T KOG4237|consen 478 SLSNYTFSNM 487 (498)
T ss_pred hhhcccccch
Confidence 6544555444
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=2.7e-22 Score=226.03 Aligned_cols=263 Identities=24% Similarity=0.282 Sum_probs=156.7
Q ss_pred eeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCC
Q 047451 364 IIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRF 443 (778)
Q Consensus 364 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 443 (778)
.|+++++.++.+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|+++.++.. .++|+.|++++
T Consensus 205 ~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~-----lp~~Lk~LdLs~N~LtsLP~l-----p~sL~~L~Ls~ 271 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPVL-----PPGLLELSIFS 271 (788)
T ss_pred EEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC-----CCCCCcEEEecCCccCcccCc-----ccccceeeccC
Confidence 34444444444444332 24555555555554 2332 234455555555555544321 14555555555
Q ss_pred CcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcc
Q 047451 444 NKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPE 523 (778)
Q Consensus 444 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 523 (778)
|.+..... .+..|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. +.+|+.|++++|.+++ +|.
T Consensus 272 N~L~~Lp~--lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 272 NPLTHLPA--LPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred Cchhhhhh--chhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC----cccccccccccCcccc-ccc
Confidence 55543211 2334555555555555 2333 23567777777777763 3431 2256677777777764 332
Q ss_pred cccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCc
Q 047451 524 TFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVK 601 (778)
Q Consensus 524 ~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 601 (778)
. ..+|+.|+|++|++ +|.. ..+|+.|++++|+++.+ |.. .++|+.|++++|+|+++. . ..++
T Consensus 340 l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt~LP-~-----l~s~ 403 (788)
T PRK15387 340 L---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTSLP-V-----LPSE 403 (788)
T ss_pred c---ccccceEecCCCccCCCCCC---CcccceehhhccccccC-ccc---ccccceEEecCCcccCCC-C-----cccC
Confidence 1 24577777777777 4432 34667777777777753 332 246778888888877542 1 1356
Q ss_pred CcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccE
Q 047451 602 LRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITA 681 (778)
Q Consensus 602 L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 681 (778)
|+.|++++|+++ .+|.. ...|+.
T Consensus 404 L~~LdLS~N~Ls-sIP~l--------------------------------------------------------~~~L~~ 426 (788)
T PRK15387 404 LKELMVSGNRLT-SLPML--------------------------------------------------------PSGLLS 426 (788)
T ss_pred CCEEEccCCcCC-CCCcc--------------------------------------------------------hhhhhh
Confidence 778888888877 46631 123566
Q ss_pred EEccCCcccccCchhccCCCCCCeecCCCCccccccchhhhccc
Q 047451 682 TILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQVFLSPFFIDFF 725 (778)
Q Consensus 682 l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~p~~~~~~~ 725 (778)
|++++|+|+ .+|..++++++|+.++|++|+|+|.+|..+..+.
T Consensus 427 L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 427 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred hhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 889999998 7899999999999999999999999999875543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.2e-20 Score=229.88 Aligned_cols=220 Identities=22% Similarity=0.275 Sum_probs=140.0
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCC-----CCCchhhcCCC-CCCEEECCCCCCCccCchhhh
Q 047451 58 TGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNF-----SEIPSEILNFS-RLTHLNLSRSYFSGQIPAELL 131 (778)
Q Consensus 58 ~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~ 131 (778)
+.+|+.+.+.-..+.........|..+++|+.|.+..+.... ..+|..+..++ +|+.|++.++.+. .+|..|
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 456776665544332221122368889999999886653211 12566666664 5899999888886 677766
Q ss_pred CCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhc
Q 047451 132 ELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIF 211 (778)
Q Consensus 132 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 211 (778)
...+|++|++++|.+. .++..+..+++|++|+++++.....+|. +..+++|++|++++|.....+|..+.
T Consensus 609 ~~~~L~~L~L~~s~l~---------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE---------KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred CccCCcEEECcCcccc---------ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhh
Confidence 4688899999988763 3445566788888888887765555563 77788888888888876667788888
Q ss_pred CCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCe
Q 047451 212 QLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKT 291 (778)
Q Consensus 212 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~ 291 (778)
.+++|+.|++++|..+. .+|...++++|+.|++++|.....+|.. ..+|++|++++ +.+. .+|..+ .+++|+.
T Consensus 679 ~L~~L~~L~L~~c~~L~-~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~-n~i~-~lP~~~-~l~~L~~ 751 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLE-ILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDE-TAIE-EFPSNL-RLENLDE 751 (1153)
T ss_pred ccCCCCEEeCCCCCCcC-ccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCC-Cccc-cccccc-ccccccc
Confidence 88888888888874333 3343235667777777776544333322 34556666655 4433 233322 3445555
Q ss_pred ecccc
Q 047451 292 LEISS 296 (778)
Q Consensus 292 L~L~~ 296 (778)
|.+.+
T Consensus 752 L~l~~ 756 (1153)
T PLN03210 752 LILCE 756 (1153)
T ss_pred ccccc
Confidence 55544
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.4e-21 Score=233.54 Aligned_cols=346 Identities=23% Similarity=0.291 Sum_probs=200.0
Q ss_pred cchhhcCCCCCCEEEcccCcC------CCCCChhhcCCC-CCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccC
Q 047451 182 VPHTLANLSSLHFLSLSGCRL------QGEFPQEIFQLP-NLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKI 254 (778)
Q Consensus 182 ~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 254 (778)
.+.+|.++++|+.|.+..+.. ...+|..+..++ +|+.|++.++ .....+..| ...+|++|++.++.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcccc-cc
Confidence 345677888888888765532 223566666654 5788887776 333222233 4577888888888776 45
Q ss_pred cccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhh
Q 047451 255 PSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWL 334 (778)
Q Consensus 255 ~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 334 (778)
+..+..+++|+.|++++++.+ ..+| .++.+++|+.|++++|.....+|..+.++++|+.|++++|...+..|. ..
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l-~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~---~i 701 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNL-KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT---GI 701 (1153)
T ss_pred ccccccCCCCCEEECCCCCCc-CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC---cC
Confidence 666777888888888774433 3344 366777888888888776667777777788888888877654444554 22
Q ss_pred cCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEE
Q 047451 335 TNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYL 414 (778)
Q Consensus 335 ~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L 414 (778)
++++|+.|++++|......+. ...+|++|++++|.+..+|..+ .+++|++|++.++... .+..... .
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~-~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~--~------- 768 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPD-ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE-KLWERVQ--P------- 768 (1153)
T ss_pred -CCCCCCEEeCCCCCCcccccc-ccCCcCeeecCCCccccccccc-cccccccccccccchh-hcccccc--c-------
Confidence 566777777777654332221 2344555555555555555432 3444444444433211 0000000 0
Q ss_pred eccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccc
Q 047451 415 NLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSG 494 (778)
Q Consensus 415 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 494 (778)
..+ ..... ++.|+.|++++|...+.+|..++++++|+.|++++|...+
T Consensus 769 ---------l~~-~~~~~----------------------~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 769 ---------LTP-LMTML----------------------SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ---------cch-hhhhc----------------------cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 000 00001 2334444444444444566667777777777777664444
Q ss_pred cCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccC
Q 047451 495 MLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGT 572 (778)
Q Consensus 495 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 572 (778)
.+|... .++ +|+.|++++|.....+|.. ..+|+.|+|++|.+ +|.++..+++|++|++++|.-...+|..+..
T Consensus 817 ~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 817 TLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred eeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 555544 344 5777777776544444432 24567777777776 6666777777777777764333334555666
Q ss_pred CCCCCEEEccCcc
Q 047451 573 LPELEVLILKSNN 585 (778)
Q Consensus 573 l~~L~~L~Ls~N~ 585 (778)
+++|+.+++++|.
T Consensus 892 L~~L~~L~l~~C~ 904 (1153)
T PLN03210 892 LKHLETVDFSDCG 904 (1153)
T ss_pred ccCCCeeecCCCc
Confidence 6777777777664
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-23 Score=207.31 Aligned_cols=406 Identities=21% Similarity=0.238 Sum_probs=229.4
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcC-CCCCcccccccCCchhHHhhc
Q 047451 86 HLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSF-NTFDNFFLKLQKPGLANLAEN 164 (778)
Q Consensus 86 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~~~~~ 164 (778)
.-..++|..|.|+.. -+.+|+.+++||.||||+|.|+.+-|++|.++++|..|-+.+ |+|+++ ....|++
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l--------~k~~F~g 138 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL--------PKGAFGG 138 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh--------hhhHhhh
Confidence 456788999998764 456789999999999999999999999999999988877766 877654 3457889
Q ss_pred CCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcc-----------cCC-
Q 047451 165 LTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTG-----------YLP- 232 (778)
Q Consensus 165 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-----------~~~- 232 (778)
+..|+.|.+.-|++.-...++|..+++|..|.+.+|.+...-...+..+..++.+.+..|+.+.. ..+
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 99999999999999988899999999999999999998844444788899999998888852211 011
Q ss_pred CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeE--eccCCCCCcccCC-ccccCCCCCCeecccccccCCchhhhccC
Q 047451 233 QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDL--YLSGGNGFSNELP-PSIGNLASLKTLEISSFNFSGTLQASLGN 309 (778)
Q Consensus 233 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--~L~~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (778)
.++......-..+.+.++..+.+..|... ++.+ .++......+..| ..|..+++|++|+|++|+++++-+.+|.+
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 33333333333344444332222222111 1111 1111011111222 23455556666666666665555555666
Q ss_pred CCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCc--CCCCCCCcccceeeccccCCC------CCCchhcc
Q 047451 310 LTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNE--PLLVPNTQKFEIIGLRSCNLS------EFPSFLHN 381 (778)
Q Consensus 310 l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~L~~L~L~~n~l~------~lp~~l~~ 381 (778)
...+++|.|..|++...... .|.++..|+.|++.+|+++. +..+.....|.+|.+-.|.+. .+-+|+..
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~---~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSG---MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred hhhhhhhhcCcchHHHHHHH---hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence 66666666666655543333 44555555555555555553 233334445555555444433 11122211
Q ss_pred cccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhccc-ce
Q 047451 382 QDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLT-SS 460 (778)
Q Consensus 382 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l-~~ 460 (778)
+..+|..|.. ....++.+.+++..+.+..-..+ ..+ ++.-.+.-|.. ++-+ ++
T Consensus 374 -----------~~~~~~~~Cq----~p~~~~~~~~~dv~~~~~~c~~~----ee~------~~~~s~~cP~~-c~c~~tV 427 (498)
T KOG4237|consen 374 -----------KSVVGNPRCQ----SPGFVRQIPISDVAFGDFRCGGP----EEL------GCLTSSPCPPP-CTCLDTV 427 (498)
T ss_pred -----------CCCCCCCCCC----CCchhccccchhccccccccCCc----ccc------CCCCCCCCCCC-cchhhhh
Confidence 1111111110 22334444444444333221100 000 00000011111 1111 12
Q ss_pred eEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCC
Q 047451 461 YLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNN 539 (778)
Q Consensus 461 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 539 (778)
...++..++ .+|..+- ..-.+|++.+|.++ .+|.. .+. +| .+|+++|++.......|.++++|.+|.|++|
T Consensus 428 vRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~-~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 428 VRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLR-SL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred Hhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHh-hh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 223333332 3333221 13557788888887 66665 223 57 7888888888777778888888888888876
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.4e-20 Score=210.31 Aligned_cols=260 Identities=22% Similarity=0.282 Sum_probs=164.7
Q ss_pred CCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEecc
Q 047451 312 QLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLS 391 (778)
Q Consensus 312 ~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls 391 (778)
.-..|+++++.++. +|. .+. ++|+.|++.+|+++.. + ..+++|++|++++|+++.+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lts-LP~---~l~--~~L~~L~L~~N~Lt~L-P-~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPD---CLP--AHITTLVIPDNNLTSL-P-ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCCc-CCc---chh--cCCCEEEccCCcCCCC-C-CCCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 45677888888774 454 222 4688888888887752 2 2357788888888888877743 3577888888
Q ss_pred CCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccC
Q 047451 392 SNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGE 471 (778)
Q Consensus 392 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~ 471 (778)
+|.+. .+|. .+.+|+.|++++|+++.++.. .++|+.|++++|++++..+ .+..++.|++++|++++
T Consensus 271 ~N~L~-~Lp~-----lp~~L~~L~Ls~N~Lt~LP~~-----p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 271 SNPLT-HLPA-----LPSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred CCchh-hhhh-----chhhcCEEECcCCcccccccc-----ccccceeECCCCccccCCC--CcccccccccccCcccc-
Confidence 88776 4443 235677788888887766542 2678888888887775422 34456677777777763
Q ss_pred CchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCC
Q 047451 472 IPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANC 549 (778)
Q Consensus 472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l 549 (778)
+|.. ..+|++|++++|+++ .+|.. +.+|+.|++++|+++. +|.. ..+|+.|++++|++ +|.. .
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~ 401 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL---P 401 (788)
T ss_pred cccc---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc---c
Confidence 4431 235777777777776 34432 2256777777777764 3432 24567777777776 4432 3
Q ss_pred CCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCCh
Q 047451 550 VKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPS 618 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~ 618 (778)
++|+.|++++|+++++ |.. ..+|+.|++++|+|+.+ |..+ ..+++|+.|++++|+|++.+|.
T Consensus 402 s~L~~LdLS~N~LssI-P~l---~~~L~~L~Ls~NqLt~L-P~sl--~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 402 SELKELMVSGNRLTSL-PML---PSGLLSLSVYRNQLTRL-PESL--IHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred cCCCEEEccCCcCCCC-Ccc---hhhhhhhhhccCccccc-ChHH--hhccCCCeEECCCCCCCchHHH
Confidence 4677777777777653 332 23566677777777643 3333 5666777777777777765554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=9.7e-19 Score=198.93 Aligned_cols=205 Identities=26% Similarity=0.396 Sum_probs=97.6
Q ss_pred cceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEc
Q 047451 362 FEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDL 441 (778)
Q Consensus 362 L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 441 (778)
...|++++++++.+|..+ .+.++.|++++|+++ .+|..+. .+|+.|++++|.++.++... .++|+.|++
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l----~~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATL----PDTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhh----hccccEEEC
Confidence 345555555666666433 245667777777666 4554432 35666666666665543321 135666666
Q ss_pred CCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccC
Q 047451 442 RFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFI 521 (778)
Q Consensus 442 ~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 521 (778)
++|.+. .+|..++..|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-- 318 (754)
T PRK15370 249 SINRIT-ELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-- 318 (754)
T ss_pred cCCccC-cCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc--
Confidence 666665 233333444555555555544 2333221 24444444444444 2332221 134444444444442
Q ss_pred cccccCCCCccEEECCCCccChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCc
Q 047451 522 PETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVK 601 (778)
Q Consensus 522 ~~~~~~l~~L~~L~L~~N~l~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 601 (778)
+|..+ .++|+.|++++|.++++ |..+. ++|+.|++++|+|+.+ |..+ .++
T Consensus 319 --------------------LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~~L-P~~l----p~~ 368 (754)
T PRK15370 319 --------------------LPETL--PPGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQITVL-PETL----PPT 368 (754)
T ss_pred --------------------CCccc--cccceeccccCCccccC-Chhhc--CcccEEECCCCCCCcC-Chhh----cCC
Confidence 33222 23455555555555442 22222 3555555555555432 2211 234
Q ss_pred CcEEEcCCCcCCCCCCh
Q 047451 602 LRIIDLSHNRFAGNLPS 618 (778)
Q Consensus 602 L~~L~ls~N~l~~~ip~ 618 (778)
|+.|++++|+++ .+|.
T Consensus 369 L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 369 ITTLDVSRNALT-NLPE 384 (754)
T ss_pred cCEEECCCCcCC-CCCH
Confidence 555555555555 4443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=2.3e-18 Score=195.83 Aligned_cols=245 Identities=24% Similarity=0.329 Sum_probs=146.5
Q ss_pred CcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCC
Q 047451 340 LTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYN 419 (778)
Q Consensus 340 L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 419 (778)
...|+++++.++. +|..-.+.++.|++++|+++.+|..+. ++|++|++++|+++ .+|..+. .+|+.|++++|
T Consensus 180 ~~~L~L~~~~Lts-LP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~----~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTT-IPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP----DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCc-CCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh----ccccEEECcCC
Confidence 3444454444443 222223445555566665555554332 35666666666655 4444322 34666666666
Q ss_pred ccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChh
Q 047451 420 LLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPAC 499 (778)
Q Consensus 420 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (778)
.+..++... ..+|+.|++++|+++. +|..++..|+.|++++|++++ +|..+. ++|+.|++++|+++ .+|..
T Consensus 252 ~L~~LP~~l----~s~L~~L~Ls~N~L~~-LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~ 322 (754)
T PRK15370 252 RITELPERL----PSALQSLDLFHNKISC-LPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPET 322 (754)
T ss_pred ccCcCChhH----hCCCCEEECcCCccCc-cccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcc
Confidence 665543321 1356666666666653 344445566666666666663 443332 36778888888887 45544
Q ss_pred hccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 047451 500 LGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELE 577 (778)
Q Consensus 500 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 577 (778)
+. .+|+.|++++|.+++ +|..+. ++|+.|++++|++ +|..+ .++|+.|+|++|+++.+ |..+. .+|+
T Consensus 323 l~---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~sL~ 391 (754)
T PRK15370 323 LP---PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNL-PENLP--AALQ 391 (754)
T ss_pred cc---ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCC-CHhHH--HHHH
Confidence 32 268888888888875 454443 6788888888887 66555 36788888888888765 33333 3588
Q ss_pred EEEccCccccccCCCCc--cccccCcCcEEEcCCCcCC
Q 047451 578 VLILKSNNFHGVIEEPN--ACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 578 ~L~Ls~N~l~~~~~~~~--~~~~l~~L~~L~ls~N~l~ 613 (778)
.|++++|++.++ |..+ .....+.+..+++.+|+++
T Consensus 392 ~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 392 IMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCcc
Confidence 888888888754 2222 1134567788888888887
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.7e-17 Score=175.98 Aligned_cols=112 Identities=21% Similarity=0.155 Sum_probs=47.2
Q ss_pred EeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCcc----CchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcC
Q 047451 90 LSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQ----IPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENL 165 (778)
Q Consensus 90 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l 165 (778)
|+|..+.++.......+..+.+|++|+++++.+++. ++..+...+.|++|+++++.+... ......++..+..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI--PRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc--chHHHHHHHHHHhc
Confidence 344444444333334444444455555555554321 223333444455555555433210 00001223334445
Q ss_pred CCCCEEEccCccCCCCcchhhcCCCC---CCEEEcccCcCC
Q 047451 166 TNLKALDLINVHISSTVPHTLANLSS---LHFLSLSGCRLQ 203 (778)
Q Consensus 166 ~~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~ 203 (778)
++|++|++++|.+....+..+..+.+ |++|++++|+++
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 55555555555554433333333333 555555555544
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=2.3e-17 Score=174.89 Aligned_cols=249 Identities=24% Similarity=0.287 Sum_probs=140.7
Q ss_pred EEcCCCCCcc-ccCCccccccCCCCCEEeCCCCCCCCC---CCchhhcCCCCCCEEECCCCCCCc------cCchhhhCC
Q 047451 64 LDLASSCLYG-SVNSTSSLFQLVHLQRLSLFDNNFNFS---EIPSEILNFSRLTHLNLSRSYFSG------QIPAELLEL 133 (778)
Q Consensus 64 L~Ls~~~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~------~~p~~l~~l 133 (778)
|+|..+.+.+ .... .+..+.+|++|+++++.++.. .++..+...+.+++|+++++.+.+ .++..+..+
T Consensus 3 l~L~~~~l~~~~~~~--~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATE--LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHH--HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 5555555542 2222 456667788888888877432 244556667778888888877652 234456677
Q ss_pred CCCCEEECcCCCCCcccccccCCchhHHhhcC---CCCCEEEccCccCCC----CcchhhcCC-CCCCEEEcccCcCCCC
Q 047451 134 SNLEVLDLSFNTFDNFFLKLQKPGLANLAENL---TNLKALDLINVHISS----TVPHTLANL-SSLHFLSLSGCRLQGE 205 (778)
Q Consensus 134 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l---~~L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~Ls~n~l~~~ 205 (778)
++|++|++++|.+.. ..+..+..+ ++|++|++++|++.+ .+...+..+ ++|++|++++|.+++.
T Consensus 81 ~~L~~L~l~~~~~~~--------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 152 (319)
T cd00116 81 CGLQELDLSDNALGP--------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152 (319)
T ss_pred CceeEEEccCCCCCh--------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCch
Confidence 888888888886532 223333333 448888888887763 223345566 7888888888887732
Q ss_pred ----CChhhcCCCCCCEEecccCCCCcc-cCC----CCCCCCCCCEEeccCCcCCcc----CcccccCCCCCCeEeccCC
Q 047451 206 ----FPQEIFQLPNLQFLGVMKNPNLTG-YLP----QFQKSSPLEDLRLSYTRFSGK----IPSSLGNLTKLEDLYLSGG 272 (778)
Q Consensus 206 ----~~~~l~~l~~L~~L~L~~n~~~~~-~~~----~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~ 272 (778)
++..+..+++|++|++++| .+.+ ..+ .+...++|++|++++|.+++. +...+..+++|++|++++
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~- 230 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD- 230 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC-
Confidence 2334556667777777776 3332 111 233445667777776666532 222334455666666665
Q ss_pred CCCcccCCcccc-----CCCCCCeecccccccCCc----hhhhccCCCCCCcccccccccC
Q 047451 273 NGFSNELPPSIG-----NLASLKTLEISSFNFSGT----LQASLGNLTQLDSLTISDSNFS 324 (778)
Q Consensus 273 n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 324 (778)
|.+++.....+. ..+.|+.|++++|.++.. +...+..+++|+++++++|.+.
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 444432211111 124556666666555421 2233344455555555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.3e-17 Score=146.60 Aligned_cols=158 Identities=24% Similarity=0.438 Sum_probs=106.9
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchh
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLA 159 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~ 159 (778)
.+..+.++..|.||+|+++. +|..+..+.+|++|++++|++. .+|.+++.+++|+.|++.-|++ ..+|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl---------~~lp 95 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------NILP 95 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------hcCc
Confidence 55666777777777777753 5677777777777888777777 6777777777777777777754 3456
Q ss_pred HHhhcCCCCCEEEccCccCCC-CcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCC
Q 047451 160 NLAENLTNLKALDLINVHISS-TVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSS 238 (778)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 238 (778)
..|+.++-|+.||+.+|++.. ..|..|-.+..|+.|++++|.+. .+|..++++++|+.|.+..| .+......++.++
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt 173 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLT 173 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC-chhhCcHHHHHHH
Confidence 667777777777777776654 45666666777777777777776 66777777777777777666 3332222555555
Q ss_pred CCCEEeccCCcCC
Q 047451 239 PLEDLRLSYTRFS 251 (778)
Q Consensus 239 ~L~~L~L~~n~l~ 251 (778)
.|++|.+.+|+++
T Consensus 174 ~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 174 RLRELHIQGNRLT 186 (264)
T ss_pred HHHHHhcccceee
Confidence 5666666666555
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.1e-16 Score=140.71 Aligned_cols=146 Identities=27% Similarity=0.424 Sum_probs=76.2
Q ss_pred CCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCccc-ccCcccccCCCCccEEECCCCcc--Chhhhh
Q 047451 471 EIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFH-GFIPETFNKGTNLRMIDFSNNLL--VPKSLA 547 (778)
Q Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~ 547 (778)
.+|..++.+++|+.|+++-|++. ..|..|+.++ .|+.|||.+|++. ...|..|..++.|+.|+|++|.+ +|..++
T Consensus 70 ~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg 147 (264)
T KOG0617|consen 70 ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG 147 (264)
T ss_pred hcChhhhhchhhhheecchhhhh-cCccccCCCc-hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh
Confidence 45555555555555555555555 5555555555 4555665555553 23455555555555555555555 555555
Q ss_pred CCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 548 NCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 548 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
.+++|+.|.+.+|.+... |..++.++.|+.|++.+|+++-.+|......-..+=+.+.+.+|++-..|.++
T Consensus 148 ~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred hhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 555666666655555443 44555555555666666655544332211111122234445555555444433
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=2.6e-12 Score=146.39 Aligned_cols=125 Identities=31% Similarity=0.463 Sum_probs=87.8
Q ss_pred CcHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCCCCCCC----CccCceeeCCC--C--CcEEEEEcCCCCCccc
Q 047451 3 CHDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDC----CLWDGVKCNED--T--GHVVELDLASSCLYGS 74 (778)
Q Consensus 3 c~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~----c~w~~v~c~~~--~--~~v~~L~Ls~~~l~~~ 74 (778)
+.++|.+||+++|+++..+. ..+|.. ..| |.|.|+.|... . ..|+.|+|+++.+.|.
T Consensus 369 t~~~~~~aL~~~k~~~~~~~-----------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ 433 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPL-----------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF 433 (623)
T ss_pred cCchHHHHHHHHHHhcCCcc-----------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCcccc
Confidence 45689999999999886431 237864 233 37999999532 1 2477888888877777
Q ss_pred cCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCC
Q 047451 75 VNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNT 145 (778)
Q Consensus 75 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 145 (778)
++. .+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|++.+.+|..++++++|++|+|++|.
T Consensus 434 ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 434 IPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 766 677777777777777776654 66667777777777777777777777777777777777777664
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=3.1e-13 Score=140.85 Aligned_cols=194 Identities=28% Similarity=0.343 Sum_probs=155.3
Q ss_pred eccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchh--hcccceeEecCCccccCCchhhhcCCcccccccccccc
Q 047451 415 NLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPI--SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNL 492 (778)
Q Consensus 415 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 492 (778)
.|++-++..++.......+.--...|++.|++.. +|..+ +..++.+.++.|.+. .+|.+++++..|++|||+.|++
T Consensus 56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 56 LLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccccchhhcCCCccccccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh
Confidence 3344444444333222334445566777777763 34433 667788888888887 7899999999999999999999
Q ss_pred cccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccc
Q 047451 493 SGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWL 570 (778)
Q Consensus 493 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 570 (778)
+ .+|..+..++ |+.|-+++|+++ .+|+.++.+..|..||.+.|.+ +|..+.++.+|+.|.++.|++...+ +.+
T Consensus 134 S-~lp~~lC~lp--Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp-~El 208 (722)
T KOG0532|consen 134 S-HLPDGLCDLP--LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP-EEL 208 (722)
T ss_pred h-cCChhhhcCc--ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC-HHH
Confidence 9 8899998888 999999999999 6788888999999999999999 8999999999999999999998864 445
Q ss_pred cCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHH
Q 047451 571 GTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKH 620 (778)
Q Consensus 571 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~ 620 (778)
..+ .|..||+|.|++..+ |..| ..+..|++|-|.+|++. +-|.++
T Consensus 209 ~~L-pLi~lDfScNkis~i-Pv~f--r~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 209 CSL-PLIRLDFSCNKISYL-PVDF--RKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred hCC-ceeeeecccCceeec-chhh--hhhhhheeeeeccCCCC-CChHHH
Confidence 555 499999999999854 5555 89999999999999998 666654
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=7.5e-12 Score=120.39 Aligned_cols=133 Identities=26% Similarity=0.255 Sum_probs=109.4
Q ss_pred hhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCC
Q 047451 476 ICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLK 553 (778)
Q Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~ 553 (778)
+...+.|+++|+|+|.|+ .+.+...-.+ .++.|++|+|.|... ..+..+++|+.|||++|.+ ...+-..+-+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 344567999999999998 6666766666 799999999999855 3488899999999999999 566666788899
Q ss_pred EEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCC
Q 047451 554 FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGN 615 (778)
Q Consensus 554 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 615 (778)
+|.|++|.|.+. ..+..+-+|..||+++|+|....... ..+++|-|+.+.|.+|++.+.
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~-~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVN-HIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhc-ccccccHHHHHhhcCCCcccc
Confidence 999999999776 56788889999999999997654332 237899999999999999853
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=9e-11 Score=133.84 Aligned_cols=107 Identities=23% Similarity=0.389 Sum_probs=70.9
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccc
Q 047451 552 LKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVN 631 (778)
Q Consensus 552 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~ 631 (778)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+ ..+++|+.|||++|+++|.+|.. +.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~--~~l~~L~~LdLs~N~lsg~iP~~-l~~-------- 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNGSIPES-LGQ-------- 488 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH--hCCCCCCEEECCCCCCCCCCchH-Hhc--------
Confidence 5667777777777777777777777777777777776666554 56677777777777777777654 211
Q ss_pred cCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCC-CCCCeecCCC
Q 047451 632 ANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNL-KGLRTLNLSN 710 (778)
Q Consensus 632 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l-~~l~~l~ls~ 710 (778)
++.|+.|+|++|+++|.+|..++.+ .++..+++++
T Consensus 489 --------------------------------------------L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 489 --------------------------------------------LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred --------------------------------------------CCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 2346666777777777777766653 3556677777
Q ss_pred Ccc
Q 047451 711 NNL 713 (778)
Q Consensus 711 n~l 713 (778)
|+.
T Consensus 525 N~~ 527 (623)
T PLN03150 525 NAG 527 (623)
T ss_pred Ccc
Confidence 764
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.5e-12 Score=135.71 Aligned_cols=193 Identities=30% Similarity=0.369 Sum_probs=143.9
Q ss_pred CcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCE
Q 047451 359 TQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGA 438 (778)
Q Consensus 359 ~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 438 (778)
+.--...+++.|++.++|..+..+..|+.+.+..|.+. .+|..+. .+..|++++++.|++...+....+. -|+.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~--~L~~lt~l~ls~NqlS~lp~~lC~l---pLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAIC--NLEALTFLDLSSNQLSHLPDGLCDL---PLKV 147 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhh--hhhHHHHhhhccchhhcCChhhhcC---ccee
Confidence 34445667777777777777777777777777777775 6666665 6666777777777766666544332 2444
Q ss_pred EEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCccc
Q 047451 439 LDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFH 518 (778)
Q Consensus 439 L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~ 518 (778)
|-+++|+ ++ .+|..++....|..||.+.|.+. .+|..+.++. +|+.|.+..|++.
T Consensus 148 li~sNNk----------------------l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 148 LIVSNNK----------------------LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHLE 202 (722)
T ss_pred EEEecCc----------------------cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhhh
Confidence 4445544 44 67888888899999999999998 7888899888 7999999999998
Q ss_pred ccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCccccc---CCCCCCEEEccCcc
Q 047451 519 GFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLG---TLPELEVLILKSNN 585 (778)
Q Consensus 519 ~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~ 585 (778)
.. |+.+. .-.|..||++.|++ +|..|..+..|++|-|.+|.+..- |..+. ...--++|+...++
T Consensus 203 ~l-p~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 203 DL-PEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hC-CHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence 54 55555 44689999999999 999999999999999999999864 44332 33446788888885
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.3e-11 Score=125.19 Aligned_cols=210 Identities=23% Similarity=0.243 Sum_probs=132.8
Q ss_pred CCcccceeeccccCCCCCC--chhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCC
Q 047451 358 NTQKFEIIGLRSCNLSEFP--SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNN 435 (778)
Q Consensus 358 ~~~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 435 (778)
.+.+|+++.|.++.+...+ .....|++++.|||+.|-+....+-.-....+++|+.|+++.|++...........++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3445555556655555444 35677888888888888776443433333467888888888887765544433334456
Q ss_pred CCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCC
Q 047451 436 LGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGN 515 (778)
Q Consensus 436 L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n 515 (778)
|+.|.++.|.++. ..+......+|+|+.|++.+|............+. .|++|||++|
T Consensus 199 lK~L~l~~CGls~---------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-~L~~LdLs~N 256 (505)
T KOG3207|consen 199 LKQLVLNSCGLSW---------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-TLQELDLSNN 256 (505)
T ss_pred hheEEeccCCCCH---------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-HHhhccccCC
Confidence 6666666665541 11223345678888888888853222222223333 6888888888
Q ss_pred cccccC-cccccCCCCccEEECCCCcc----Chhh-----hhCCCCCCEEeCCCCcCCCCC-cccccCCCCCCEEEccCc
Q 047451 516 KFHGFI-PETFNKGTNLRMIDFSNNLL----VPKS-----LANCVKLKFLDLGDNQITDFF-PSWLGTLPELEVLILKSN 584 (778)
Q Consensus 516 ~l~~~~-~~~~~~l~~L~~L~L~~N~l----~~~~-----l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N 584 (778)
++.... -.....++.|+.|+++.+.+ .|.. ...+++|++|+++.|+|.+.. -..+..+++|+.|.+..|
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 876432 13456678888888888887 3433 456788999999999997642 134455677888888888
Q ss_pred ccccc
Q 047451 585 NFHGV 589 (778)
Q Consensus 585 ~l~~~ 589 (778)
.+...
T Consensus 337 ~ln~e 341 (505)
T KOG3207|consen 337 YLNKE 341 (505)
T ss_pred ccccc
Confidence 88654
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=1.3e-10 Score=126.72 Aligned_cols=198 Identities=36% Similarity=0.501 Sum_probs=134.4
Q ss_pred EEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCC
Q 047451 387 SLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNN 466 (778)
Q Consensus 387 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n 466 (778)
.++++.|.+...+.... ..+.++.|++.+|.++.+.+...... .+|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~---~~~~l~~L~l~~n~i~~i~~~~~~~~-~nL~~L~l~~N~i~------------------- 153 (394)
T COG4886 97 SLDLNLNRLRSNISELL---ELTNLTSLDLDNNNITDIPPLIGLLK-SNLKELDLSDNKIE------------------- 153 (394)
T ss_pred eeeccccccccCchhhh---cccceeEEecCCcccccCccccccch-hhcccccccccchh-------------------
Confidence 45666665532222211 33445555555555555544321110 14555555555544
Q ss_pred ccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--Chh
Q 047451 467 QLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPK 544 (778)
Q Consensus 467 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~ 544 (778)
.+|..+..+++|+.|++++|+++ .+|......+ .|+.|++++|++.. +|........|++|.+++|++ .+.
T Consensus 154 ----~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~-~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~ 226 (394)
T COG4886 154 ----SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS-NLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLS 226 (394)
T ss_pred ----hhhhhhhccccccccccCCchhh-hhhhhhhhhh-hhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcceecch
Confidence 45556778888888999998888 5555444555 68889999998884 444445566688999999954 778
Q ss_pred hhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 545 SLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 545 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
.+..+..+..+.+.+|++... +..++.++++++|++++|.++.+.. + ..+.+++.||+++|.++...|..
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~--~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS--L--GSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhhhcccccccccCCceeeec-cchhccccccceecccccccccccc--c--cccCccCEEeccCccccccchhh
Confidence 888888999999999988764 5677888889999999999987644 3 67889999999999998555543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=1.2e-10 Score=127.05 Aligned_cols=197 Identities=31% Similarity=0.421 Sum_probs=113.3
Q ss_pred EEecCCCCC-CcCCCCCCCcccceeeccccCCCCCCchhcccc-cccEEeccCCcCCCCCchhHHhcCCCCccEEeccCC
Q 047451 342 SLNFPNCNL-NEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQD-QLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYN 419 (778)
Q Consensus 342 ~L~l~~n~l-~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 419 (778)
.++...+.+ .........+.++.+++.+|.++.++....... +|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i------------------------ 152 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI------------------------ 152 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch------------------------
Confidence 455555554 222222233445555555555555554444442 555555555554
Q ss_pred ccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChh
Q 047451 420 LLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPAC 499 (778)
Q Consensus 420 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (778)
..++. ....+++|+.|++++|++. .+|...+..+.|+.|++++|++. .+|..
T Consensus 153 --~~l~~--~~~~l~~L~~L~l~~N~l~-----------------------~l~~~~~~~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 153 --ESLPS--PLRNLPNLKNLDLSFNDLS-----------------------DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred --hhhhh--hhhccccccccccCCchhh-----------------------hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence 44321 1233456666666666655 23333335556666666666666 44443
Q ss_pred hccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCC
Q 047451 500 LGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELE 577 (778)
Q Consensus 500 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 577 (778)
..... .|++|.+++|.+. ..+..+..+.++..+.+.+|++ .+..+..++++++|++++|+++.+.+ ++.+.+++
T Consensus 205 ~~~~~-~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~ 280 (394)
T COG4886 205 IELLS-ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLR 280 (394)
T ss_pred hhhhh-hhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccC
Confidence 32222 4666777766433 2344566667777777777777 36777777788888888888877644 77778888
Q ss_pred EEEccCccccccCCCCc
Q 047451 578 VLILKSNNFHGVIEEPN 594 (778)
Q Consensus 578 ~L~Ls~N~l~~~~~~~~ 594 (778)
.|++++|.+....+...
T Consensus 281 ~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 281 ELDLSGNSLSNALPLIA 297 (394)
T ss_pred EEeccCccccccchhhh
Confidence 88888888776655443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=8.8e-11 Score=109.32 Aligned_cols=121 Identities=26% Similarity=0.346 Sum_probs=33.9
Q ss_pred ccEEECCCCcccccCccccc-CCCCccEEECCCCcc-ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCc
Q 047451 507 LWVLKLQGNKFHGFIPETFN-KGTNLRMIDFSNNLL-VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSN 584 (778)
Q Consensus 507 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 584 (778)
+++|+|++|.|+.+ +.++ .+.+|+.|++++|.| .-..+..++.|++|++++|+|+.+.+.....+++|+.|++++|
T Consensus 21 ~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 21 LRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred cccccccccccccc--cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 44444444444422 1222 234445555555554 2223445566666666666666543221234566666666666
Q ss_pred cccccCCCCccccccCcCcEEEcCCCcCCCCCCh---HHHhccccccccc
Q 047451 585 NFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPS---KHFECWNAMKDVN 631 (778)
Q Consensus 585 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~---~~~~~~~~l~~l~ 631 (778)
+|...... .....+++|+.|++.+|+++. -+. .++..+++|+.|+
T Consensus 99 ~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 99 KISDLNEL-EPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp ---SCCCC-GGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEET
T ss_pred cCCChHHh-HHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeC
Confidence 66544221 122456666666666666652 222 2344556666555
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.3e-10 Score=108.29 Aligned_cols=128 Identities=28% Similarity=0.375 Sum_probs=53.6
Q ss_pred hhcCCcccccccccccccccCChhhc-cccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--Chhhh-hCCCC
Q 047451 476 ICSLNGLYALDLSYNNLSGMLPACLG-NFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSL-ANCVK 551 (778)
Q Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l-~~l~~ 551 (778)
+.+..++++|+|++|.|+. + +.+. .+. +|+.|++++|.|+.. +.+..++.|++|++++|+| +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~-~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLD-KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-T-T--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccccc-c-cchhhhhc-CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 4456678999999999983 3 3444 344 799999999999965 4688899999999999999 54445 46999
Q ss_pred CCEEeCCCCcCCCCCc-ccccCCCCCCEEEccCccccccCC-CCccccccCcCcEEEcC
Q 047451 552 LKFLDLGDNQITDFFP-SWLGTLPELEVLILKSNNFHGVIE-EPNACFEFVKLRIIDLS 608 (778)
Q Consensus 552 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~l~~L~~L~ls 608 (778)
|++|++++|+|.+... ..+..+++|+.|+|.+|++..... ..+....+|+|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 9999999999987532 567889999999999999975421 11234678999999843
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=2.4e-11 Score=116.94 Aligned_cols=116 Identities=29% Similarity=0.357 Sum_probs=86.0
Q ss_pred CCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-ChhhhhCC
Q 047451 471 EIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-VPKSLANC 549 (778)
Q Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~l~~l 549 (778)
.+..+..-.+.++.|++|+|.|.. + +.+..++ +|+.||||+|.++... ..=.++-+.++|.|++|.| .-..++.+
T Consensus 298 ~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~-~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~La~N~iE~LSGL~KL 373 (490)
T KOG1259|consen 298 QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELP-QLQLLDLSGNLLAECV-GWHLKLGNIKTLKLAQNKIETLSGLRKL 373 (490)
T ss_pred hhhhhhhhccceeEEeccccceee-e-hhhhhcc-cceEeecccchhHhhh-hhHhhhcCEeeeehhhhhHhhhhhhHhh
Confidence 455566667778888888888762 2 2356666 6888888888887432 2334567788888888888 56677888
Q ss_pred CCCCEEeCCCCcCCCCC-cccccCCCCCCEEEccCccccccC
Q 047451 550 VKLKFLDLGDNQITDFF-PSWLGTLPELEVLILKSNNFHGVI 590 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~ 590 (778)
-+|..||+++|+|.... ...++++|-|+.+.|.+|++.+..
T Consensus 374 YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88999999999987653 356788999999999999988653
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=3.4e-11 Score=119.01 Aligned_cols=133 Identities=22% Similarity=0.248 Sum_probs=83.4
Q ss_pred CCcccccccccccccccCC----hhhccccccccEEECCCCcccc----cCcccccCCCCccEEECCCCcc-------Ch
Q 047451 479 LNGLYALDLSYNNLSGMLP----ACLGNFSVQLWVLKLQGNKFHG----FIPETFNKGTNLRMIDFSNNLL-------VP 543 (778)
Q Consensus 479 l~~L~~L~Ls~N~l~~~~~----~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l-------~~ 543 (778)
-+.|+++....|++..... ..+...+ .|+.+.++.|.|.. .....|..+++|+.|||.+|-+ ..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~-~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHP-TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhcc-ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3567777777776653221 2233333 57777777777642 2235667777788888888776 45
Q ss_pred hhhhCCCCCCEEeCCCCcCCCCCcccc-----cCCCCCCEEEccCccccccCCC--CccccccCcCcEEEcCCCcC
Q 047451 544 KSLANCVKLKFLDLGDNQITDFFPSWL-----GTLPELEVLILKSNNFHGVIEE--PNACFEFVKLRIIDLSHNRF 612 (778)
Q Consensus 544 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~--~~~~~~l~~L~~L~ls~N~l 612 (778)
..+..+++|++|++++|.+......+| ...|+|++|.+.+|.|+.--.. .......+.|..|+|++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 566777788888888887776544333 2467788888888877532110 11123467788888888888
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.7e-11 Score=120.56 Aligned_cols=161 Identities=24% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCCCCCeEeccCCCCCcccCC--ccccCCCCCCeecccccccCCc--hhhhccCCCCCCcccccccccCCCCCcchhhhc
Q 047451 260 NLTKLEDLYLSGGNGFSNELP--PSIGNLASLKTLEISSFNFSGT--LQASLGNLTQLDSLTISDSNFSGPMSSSLSWLT 335 (778)
Q Consensus 260 ~l~~L~~L~L~~~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 335 (778)
++.+|+++.|.+ ..+. ..+ .....+++++.|+|+.|-+... +.....++|+|+.|+++.|++......
T Consensus 119 n~kkL~~IsLdn-~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------ 190 (505)
T KOG3207|consen 119 NLKKLREISLDN-YRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------ 190 (505)
T ss_pred hHHhhhheeecC-cccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc------
Confidence 456666666664 2222 111 2344566666666666655432 122334455555555555554422211
Q ss_pred CCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCC--CCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccE
Q 047451 336 NLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLS--EFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQY 413 (778)
Q Consensus 336 ~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~ 413 (778)
.....++.|+.|.++.|+++ .+...+..+|+|+.|++..|..... .......+..|+.
T Consensus 191 ------------------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 191 ------------------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQE 250 (505)
T ss_pred ------------------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhh
Confidence 11114555666666666665 3334556677788888877742211 1111124567788
Q ss_pred EeccCCccccccCCCCCCCCCCCCEEEcCCCcCcC
Q 047451 414 LNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQG 448 (778)
Q Consensus 414 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 448 (778)
|+|++|.+.+.........++.|..|+++.+.+..
T Consensus 251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIAS 285 (505)
T ss_pred ccccCCcccccccccccccccchhhhhccccCcch
Confidence 88888887777766566677788888887777664
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=4.8e-11 Score=117.91 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=8.7
Q ss_pred HhhcCCCCCEEEccCccC
Q 047451 161 LAENLTNLKALDLINVHI 178 (778)
Q Consensus 161 ~~~~l~~L~~L~L~~n~l 178 (778)
.++.+..|++|.|.+|.+
T Consensus 115 ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 115 LLSSCTDLEELYLNNCGL 132 (382)
T ss_pred HHHhccCHHHHhhhcCCC
Confidence 344445555555555544
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=1.5e-10 Score=126.46 Aligned_cols=245 Identities=25% Similarity=0.262 Sum_probs=151.1
Q ss_pred CCCCCcEEecCCCCCCc-CCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEE
Q 047451 336 NLNQLTSLNFPNCNLNE-PLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYL 414 (778)
Q Consensus 336 ~l~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L 414 (778)
.+..++.+.+..|.+.. ......+.+++.+++.+|.+..+...+..+++|++|++++|.|+...+-. .+..|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhh
Confidence 34555666666666665 22244566677777777777766554566667777777777666332222 34446666
Q ss_pred eccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCc-hhhhcCCccccccccccccc
Q 047451 415 NLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIP-PSICSLNGLYALDLSYNNLS 493 (778)
Q Consensus 415 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~ 493 (778)
++++|.+..+... ..+..|+.+++++|.+. ..-+ . ...+.+++.+++++|.+.
T Consensus 146 ~l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~----------------------~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 146 NLSGNLISDISGL---ESLKSLKLLDLSYNRIV----------------------DIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eeccCcchhccCC---ccchhhhcccCCcchhh----------------------hhhhhh-hhhccchHHHhccCCchh
Confidence 6666666655442 22355555555555544 2222 1 466778888888888776
Q ss_pred ccCChhhccccccccEEECCCCcccccCcccccCCCC--ccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCccc
Q 047451 494 GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTN--LRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSW 569 (778)
Q Consensus 494 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 569 (778)
.. ..+.... .+..+++..|.++..- .+..+.. |+.+++++|++ .+..+..+..+..|++.+|++... ..
T Consensus 200 ~i--~~~~~~~-~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~ 272 (414)
T KOG0531|consen 200 EI--EGLDLLK-KLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EG 272 (414)
T ss_pred cc--cchHHHH-HHHHhhcccccceecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--cc
Confidence 32 2222222 4555678888877442 2233333 78888888888 336778888888999998888776 44
Q ss_pred ccCCCCCCEEEccCccccccCCCCcc--ccccCcCcEEEcCCCcCCCCCC
Q 047451 570 LGTLPELEVLILKSNNFHGVIEEPNA--CFEFVKLRIIDLSHNRFAGNLP 617 (778)
Q Consensus 570 ~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~l~~L~~L~ls~N~l~~~ip 617 (778)
+...+.+..+....|.+......... ....+.++.+.+.+|++....+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 56667778888888887633111111 2566788888888888875444
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=4.1e-09 Score=122.80 Aligned_cols=85 Identities=29% Similarity=0.312 Sum_probs=41.9
Q ss_pred hcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchh
Q 047451 106 ILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHT 185 (778)
Q Consensus 106 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~ 185 (778)
|..++.|++|||++|.--+.+|..+++|-+||+|+++++.| ..+|..+.++.+|.+|++..+.....+|..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I---------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI---------SHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc---------cccchHHHHHHhhheeccccccccccccch
Confidence 44455555555555443334555555555555555555543 334455555555555555544443334444
Q ss_pred hcCCCCCCEEEccc
Q 047451 186 LANLSSLHFLSLSG 199 (778)
Q Consensus 186 ~~~l~~L~~L~Ls~ 199 (778)
...+++|++|.+..
T Consensus 638 ~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 638 LLELQSLRVLRLPR 651 (889)
T ss_pred hhhcccccEEEeec
Confidence 44455555555443
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.7e-09 Score=80.76 Aligned_cols=61 Identities=34% Similarity=0.536 Sum_probs=49.3
Q ss_pred CCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcC
Q 047451 550 VKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRF 612 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 612 (778)
++|++|++++|+++.+.+.+|.++++|++|++++|+++.+.+..+ .++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f--~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF--SNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTT--TTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHH--cCCCCCCEEeCcCCcC
Confidence 467888888888888877888888888888888888887776665 7888888888888875
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=1.2e-09 Score=119.29 Aligned_cols=247 Identities=25% Similarity=0.304 Sum_probs=167.0
Q ss_pred cCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCC-CCCCcccceeeccccCCCCCCchhccccccc
Q 047451 308 GNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLL-VPNTQKFEIIGLRSCNLSEFPSFLHNQDQLI 386 (778)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~ 386 (778)
..+..++.+.+..|.+..... .+..+.+|+.|++.+|.+..... ...+++|++|++++|.|+.+. .+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~----~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILN----HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhhhhc----ccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchh
Confidence 456778888899888875221 47788999999999999998777 778999999999999999886 366777899
Q ss_pred EEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCC
Q 047451 387 SLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNN 466 (778)
Q Consensus 387 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n 466 (778)
.|++++|.++ .+... . .+..|+.+++++|.+..+.... ...+.+++.+++.+|.+......
T Consensus 144 ~L~l~~N~i~-~~~~~-~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~-------------- 204 (414)
T KOG0531|consen 144 ELNLSGNLIS-DISGL-E--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL-------------- 204 (414)
T ss_pred hheeccCcch-hccCC-c--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch--------------
Confidence 9999999997 33322 2 4789999999999999887631 24557788888888877643322
Q ss_pred ccccCCchhhhcCCcccccccccccccccCChhhccccc-cccEEECCCCcccccCcccccCCCCccEEECCCCcc-Chh
Q 047451 467 QLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSV-QLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-VPK 544 (778)
Q Consensus 467 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~ 544 (778)
..+..+..+++..|.++..-+ +..... +|+.+++++|++... +..+..+..+..|++.+|++ .-.
T Consensus 205 ----------~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 205 ----------DLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred ----------HHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc
Confidence 233334444555555542211 111110 266666666666632 24555666677777777777 333
Q ss_pred hhhCCCCCCEEeCCCCcCCCC---Ccc-cccCCCCCCEEEccCccccccCC
Q 047451 545 SLANCVKLKFLDLGDNQITDF---FPS-WLGTLPELEVLILKSNNFHGVIE 591 (778)
Q Consensus 545 ~l~~l~~L~~L~Ls~N~l~~~---~~~-~~~~l~~L~~L~Ls~N~l~~~~~ 591 (778)
.+.....+..+....|++... ... .....+.++...+.+|.+....+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 455566667777777776532 111 14456778888888888776543
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.70 E-value=3.4e-10 Score=121.44 Aligned_cols=126 Identities=28% Similarity=0.376 Sum_probs=96.4
Q ss_pred cccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--Chh-hhhCCCCCCEEeC
Q 047451 481 GLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPK-SLANCVKLKFLDL 557 (778)
Q Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~-~l~~l~~L~~L~L 557 (778)
.|.+.+.++|.+. .+...+.-++ .|+.|+|++|+++.. +.+..++.|++|||++|.+ +|. ...++. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~-ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLP-ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHH-Hhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 5777888888887 5566666666 689999999998865 3778888999999999988 443 223344 899999
Q ss_pred CCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCC
Q 047451 558 GDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAG 614 (778)
Q Consensus 558 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~ 614 (778)
++|.++.. ..++++.+|+.||+++|-|.+.-.-.+ ...+..|+.|.|.||++.|
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCcccc
Confidence 99998876 567888899999999998876543332 2567788999999999864
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=5.6e-10 Score=107.74 Aligned_cols=84 Identities=30% Similarity=0.305 Sum_probs=38.4
Q ss_pred CCEEECCCCCCCcc-CchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCcc-CCC-CcchhhcC
Q 047451 112 LTHLNLSRSYFSGQ-IPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVH-ISS-TVPHTLAN 188 (778)
Q Consensus 112 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~ 188 (778)
|++||||...|+.. +-..++.|.+|+.|.+.+++++ ..+...+.+-.+|+.|+++.+. ++. ...--+..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--------DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--------cHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 55555555444321 2222344555555555555332 2344444455555555555443 111 11122445
Q ss_pred CCCCCEEEcccCcCC
Q 047451 189 LSSLHFLSLSGCRLQ 203 (778)
Q Consensus 189 l~~L~~L~Ls~n~l~ 203 (778)
++.|.+|+++.|.+.
T Consensus 259 cs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLF 273 (419)
T ss_pred hhhHhhcCchHhhcc
Confidence 566666666666554
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=1.5e-08 Score=77.45 Aligned_cols=57 Identities=42% Similarity=0.613 Sum_probs=34.7
Q ss_pred CccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccc
Q 047451 530 NLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNF 586 (778)
Q Consensus 530 ~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 586 (778)
+|++|++++|++ .+..|.++++|++|++++|+++.+.+.+|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 344444444444 223455566666666777777666666677777777777777654
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=3.1e-08 Score=115.58 Aligned_cols=132 Identities=22% Similarity=0.288 Sum_probs=91.6
Q ss_pred CCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcC
Q 047451 109 FSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLAN 188 (778)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 188 (778)
....|...+-+|.+. .++... .+++|++|-+..|.- .+. .....+|..++.|++|||++|.--+.+|..++.
T Consensus 522 ~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~---~l~---~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSD---WLL---EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hhheeEEEEeccchh-hccCCC-CCCccceEEEeecch---hhh---hcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 355677777777765 344332 345788888888741 011 223455788889999999988777788888888
Q ss_pred CCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCc
Q 047451 189 LSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTR 249 (778)
Q Consensus 189 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 249 (778)
+-+|++|+++++.+. .+|..+.++..|.+|++..+............+.+|++|.+....
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999988888 788888888888888888774333332234446667776666543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=9e-10 Score=106.36 Aligned_cols=157 Identities=23% Similarity=0.192 Sum_probs=87.5
Q ss_pred CCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCC--ChhhcC
Q 047451 135 NLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEF--PQEIFQ 212 (778)
Q Consensus 135 ~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~l~~ 212 (778)
.|++||||...|+. ..+...++.+.+|+.|.+.++++...+...+++-.+|+.|+++.+.--... .--+.+
T Consensus 186 Rlq~lDLS~s~it~-------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeH-------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 57888888775543 234456677778888888888877777777777777888887776432111 122456
Q ss_pred CCCCCEEecccCCCCcccCC-CCCC-CCCCCEEeccCCcCC---ccCcccccCCCCCCeEeccCCCCCcccCCccccCCC
Q 047451 213 LPNLQFLGVMKNPNLTGYLP-QFQK-SSPLEDLRLSYTRFS---GKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLA 287 (778)
Q Consensus 213 l~~L~~L~L~~n~~~~~~~~-~~~~-l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~ 287 (778)
++.|..|++++|...+.... .... -++|+.|+++++.-. ..+..-...+++|.+|+|++|+.++......|.+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 77777777777633332222 1111 234566666654311 011111234556666666655555444444445555
Q ss_pred CCCeecccccc
Q 047451 288 SLKTLEISSFN 298 (778)
Q Consensus 288 ~L~~L~L~~n~ 298 (778)
.|++|.++.|.
T Consensus 339 ~L~~lSlsRCY 349 (419)
T KOG2120|consen 339 YLQHLSLSRCY 349 (419)
T ss_pred hheeeehhhhc
Confidence 55555555554
No 46
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.42 E-value=3.4e-07 Score=63.81 Aligned_cols=43 Identities=40% Similarity=0.810 Sum_probs=29.9
Q ss_pred cHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCceeeC
Q 047451 4 HDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDCCLWDGVKCN 55 (778)
Q Consensus 4 ~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~~v~c~ 55 (778)
+++|++||++||+++..++. +.+.+|.... ..+||.|.||.|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~--------~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPS--------GVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC---------CCCTT--TT---S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccC--------cccccCCCcC-CCCCeeeccEEeC
Confidence 36899999999999996542 3899999731 2799999999995
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=1.7e-08 Score=108.79 Aligned_cols=170 Identities=18% Similarity=0.131 Sum_probs=124.2
Q ss_pred hcccceeEecCCccccCCchhhhcC-Cccccccccccccc----------ccCChhhccccccccEEECCCCcccccCcc
Q 047451 455 SVLTSSYLVSNNQLTGEIPPSICSL-NGLYALDLSYNNLS----------GMLPACLGNFSVQLWVLKLQGNKFHGFIPE 523 (778)
Q Consensus 455 ~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~----------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 523 (778)
..+|+.|.+.++.+... ..+..+ ..|++|. .+|.+. |.+... ..+. .|.+.+.++|.+. .+..
T Consensus 108 F~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns-~~Wn-~L~~a~fsyN~L~-~mD~ 181 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNS-PVWN-KLATASFSYNRLV-LMDE 181 (1096)
T ss_pred ccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccc-hhhh-hHhhhhcchhhHH-hHHH
Confidence 67899999999988631 112111 1233332 222221 111111 1122 5888899999998 5567
Q ss_pred cccCCCCccEEECCCCcc-ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcC
Q 047451 524 TFNKGTNLRMIDFSNNLL-VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKL 602 (778)
Q Consensus 524 ~~~~l~~L~~L~L~~N~l-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 602 (778)
++.-++.|+.|||++|++ ..+.+..+++|++|||+.|.+..+.--...++. |+.|.+++|.++..- .+ .++.+|
T Consensus 182 SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gi--e~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GI--ENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hH--Hhhhhh
Confidence 888899999999999999 666899999999999999999887544444554 999999999998663 22 689999
Q ss_pred cEEEcCCCcCCCCCChHHHhccccccccccCCc
Q 047451 603 RIIDLSHNRFAGNLPSKHFECWNAMKDVNANNL 635 (778)
Q Consensus 603 ~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~ 635 (778)
+.||+++|-+.+.-.-..+..+.+|+.|.+.++
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 999999999997766667788889999988754
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.5e-07 Score=91.36 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=41.7
Q ss_pred CCccEEECCCCcc----ChhhhhCCCCCCEEeCCCCcCCCCC-cccccCCCCCCEEEccCccccccCCC----Ccccccc
Q 047451 529 TNLRMIDFSNNLL----VPKSLANCVKLKFLDLGDNQITDFF-PSWLGTLPELEVLILKSNNFHGVIEE----PNACFEF 599 (778)
Q Consensus 529 ~~L~~L~L~~N~l----~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~~~l 599 (778)
+++..+.+..|.+ ....+..++.+-.|+|+.|+|.+.. -+.+.+++.|..|.+++|++...... ....+.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 4445555555554 2233444555556666666665432 23455666666666666665433221 1123566
Q ss_pred CcCcEEEcC
Q 047451 600 VKLRIIDLS 608 (778)
Q Consensus 600 ~~L~~L~ls 608 (778)
++++.|+=+
T Consensus 279 ~~v~vLNGs 287 (418)
T KOG2982|consen 279 TKVQVLNGS 287 (418)
T ss_pred cceEEecCc
Confidence 777777644
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=4.1e-07 Score=88.32 Aligned_cols=228 Identities=21% Similarity=0.176 Sum_probs=118.6
Q ss_pred ccceeeccccCCCCCCc---hhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCC
Q 047451 361 KFEIIGLRSCNLSEFPS---FLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLG 437 (778)
Q Consensus 361 ~L~~L~L~~n~l~~lp~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 437 (778)
.++.+.+.++.|....+ .-..++.++++||.+|.|+...........++.|+.|+++.|.+.......+ .+..+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceE
Confidence 34444445554442221 1133556777777777776321111112356666666666666655544433 3345566
Q ss_pred EEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcc
Q 047451 438 ALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKF 517 (778)
Q Consensus 438 ~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l 517 (778)
+|-|.+..+.-. .....+..++.++.|.+|.|.+ +.+++..|.+
T Consensus 125 ~lVLNgT~L~w~---------------------~~~s~l~~lP~vtelHmS~N~~---------------rq~n~Dd~c~ 168 (418)
T KOG2982|consen 125 VLVLNGTGLSWT---------------------QSTSSLDDLPKVTELHMSDNSL---------------RQLNLDDNCI 168 (418)
T ss_pred EEEEcCCCCChh---------------------hhhhhhhcchhhhhhhhccchh---------------hhhccccccc
Confidence 666655544310 2223455667777777777632 2233333333
Q ss_pred cccCcccccCCCCccEEECCCCcc-----ChhhhhCCCCCCEEeCCCCcCCCCCc-ccccCCCCCCEEEccCccccccCC
Q 047451 518 HGFIPETFNKGTNLRMIDFSNNLL-----VPKSLANCVKLKFLDLGDNQITDFFP-SWLGTLPELEVLILKSNNFHGVIE 591 (778)
Q Consensus 518 ~~~~~~~~~~l~~L~~L~L~~N~l-----~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 591 (778)
.... +.+++|....|.. .-.--.-++++..+-+..|.+.+... ..+..+|.+.-|+|+.|+|..--.
T Consensus 169 e~~s-------~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas 241 (418)
T KOG2982|consen 169 EDWS-------TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS 241 (418)
T ss_pred cccc-------hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH
Confidence 3211 1233344444433 11112335777778888887766533 356667777788888888764322
Q ss_pred CCccccccCcCcEEEcCCCcCCCCCC----hH-HHhccccccccccC
Q 047451 592 EPNACFEFVKLRIIDLSHNRFAGNLP----SK-HFECWNAMKDVNAN 633 (778)
Q Consensus 592 ~~~~~~~l~~L~~L~ls~N~l~~~ip----~~-~~~~~~~l~~l~~~ 633 (778)
.-+..++++|..|.+++|++...+. .. .++.++.+++|+-+
T Consensus 242 -vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 242 -VDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred -HHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 1133677888888888888763322 11 12345555555544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=3e-07 Score=88.05 Aligned_cols=115 Identities=19% Similarity=0.160 Sum_probs=59.9
Q ss_pred CCCCCEEeccCCcCCccCc----ccccCCCCCCeEeccCCCCCcccCC-----ccccCCCCCCeecccccccCCc----h
Q 047451 237 SSPLEDLRLSYTRFSGKIP----SSLGNLTKLEDLYLSGGNGFSNELP-----PSIGNLASLKTLEISSFNFSGT----L 303 (778)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~ 303 (778)
-+.|+......|++..-.. ..+..-..|+++.+.. |.+..... ..+..+.+|+.||+.+|.++.. .
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 3455555555555432111 1122224566666655 54432211 1223456777788877777633 2
Q ss_pred hhhccCCCCCCcccccccccCCCCCcc-hhhh--cCCCCCcEEecCCCCCCc
Q 047451 304 QASLGNLTQLDSLTISDSNFSGPMSSS-LSWL--TNLNQLTSLNFPNCNLNE 352 (778)
Q Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l--~~l~~L~~L~l~~n~l~~ 352 (778)
..++...+.|++|.+.+|-++...... +..+ ...++|..|...+|.+.+
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 344556677788888887766443221 1111 134677777777776543
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=1.9e-07 Score=95.00 Aligned_cols=301 Identities=21% Similarity=0.157 Sum_probs=139.3
Q ss_pred CCCCEEeCCCCCCC-CCCCchhhcCCCCCCEEECCCCC-CCccCchhh-hCCCCCCEEECcCCC-CCcccccccCCchhH
Q 047451 85 VHLQRLSLFDNNFN-FSEIPSEILNFSRLTHLNLSRSY-FSGQIPAEL-LELSNLEVLDLSFNT-FDNFFLKLQKPGLAN 160 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~ 160 (778)
..||.|.+.++.-. ...+-....+++++++|++.+|. +++..-..+ ..+++|++|++..|. |++ ..+..
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~-------~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD-------VSLKY 210 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH-------HHHHH
Confidence 46788888887532 22234455678888888888875 333222233 347888888888752 222 22334
Q ss_pred HhhcCCCCCEEEccCcc-CCCC-cchhhcCCCCCCEEEcccCcCCCCCChhh----cCCCCCCEEecccCCCCcccCC--
Q 047451 161 LAENLTNLKALDLINVH-ISST-VPHTLANLSSLHFLSLSGCRLQGEFPQEI----FQLPNLQFLGVMKNPNLTGYLP-- 232 (778)
Q Consensus 161 ~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l----~~l~~L~~L~L~~n~~~~~~~~-- 232 (778)
....+++|++|+++++. +++. +...+.++..++.+.+.+|.-.+ -+.+ .....+.++++.++..++...-
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 55677888888887764 2221 11223445556666555543211 1111 1223344444444433332211
Q ss_pred CCCCCCCCCEEeccCCcC-CccCcccc-cCCCCCCeEeccCCCCCcccCCcccc-CCCCCCeecccccccCCc--hhhhc
Q 047451 233 QFQKSSPLEDLRLSYTRF-SGKIPSSL-GNLTKLEDLYLSGGNGFSNELPPSIG-NLASLKTLEISSFNFSGT--LQASL 307 (778)
Q Consensus 233 ~~~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~--~~~~l 307 (778)
.-..+..|+.++.+++.. ++..-..+ .++.+|+.+.+++|.++++.-...++ +.+.|+.+++..+..... +...-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 122344455555555432 11111111 23455555555554444433322222 234455555544432211 11111
Q ss_pred cCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCC--CCCchhcccccc
Q 047451 308 GNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLS--EFPSFLHNQDQL 385 (778)
Q Consensus 308 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~l~~L 385 (778)
.+++.|+.+.++.+...... .+..+. ........++.+.++++... ..-+.+..+++|
T Consensus 369 ~~C~~lr~lslshce~itD~--gi~~l~------------------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDE--GIRHLS------------------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred cCCchhccCChhhhhhhhhh--hhhhhh------------------hccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 23344444444444321110 000000 00113445555666666544 222456677788
Q ss_pred cEEeccCCcCCCCCchhHHhcCCCCccEE
Q 047451 386 ISLDLSSNMIAGKIPEWLFSAGTNSLQYL 414 (778)
Q Consensus 386 ~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L 414 (778)
+.+++.+++-...-+..-+...+++++..
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 88888877644333333333355555443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=4.8e-07 Score=86.71 Aligned_cols=157 Identities=19% Similarity=0.109 Sum_probs=78.2
Q ss_pred CCCCCCCCEEEcCCCcCcCCCCchh------hcccceeEecCCccccCCch----hh---------hcCCcccccccccc
Q 047451 430 VLPWNNLGALDLRFNKLQGPLPIPI------SVLTSSYLVSNNQLTGEIPP----SI---------CSLNGLYALDLSYN 490 (778)
Q Consensus 430 ~~~~~~L~~L~L~~n~l~~~~~~~~------~~~l~~L~l~~n~l~~~~~~----~~---------~~l~~L~~L~Ls~N 490 (778)
...||.|+.++||+|.+....|... ...+.+|.+++|.+...... ++ .+-|.|++.+...|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3456777777777777766555544 44566666666655422111 11 12345666666666
Q ss_pred cccccCChhh----ccccccccEEECCCCccccc-----CcccccCCCCccEEECCCCcc-------ChhhhhCCCCCCE
Q 047451 491 NLSGMLPACL----GNFSVQLWVLKLQGNKFHGF-----IPETFNKGTNLRMIDFSNNLL-------VPKSLANCVKLKF 554 (778)
Q Consensus 491 ~l~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l-------~~~~l~~l~~L~~ 554 (778)
++. ..+... ......|+++.+..|.|... .-..+..+.+|+.|||+.|.+ ....+...+.|+.
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 554 222111 11111455666666655422 111233445666666666655 2334444555666
Q ss_pred EeCCCCcCCCCCcccc----c--CCCCCCEEEccCcccc
Q 047451 555 LDLGDNQITDFFPSWL----G--TLPELEVLILKSNNFH 587 (778)
Q Consensus 555 L~Ls~N~l~~~~~~~~----~--~l~~L~~L~Ls~N~l~ 587 (778)
|.+.+|-++......+ . ..|+|..|-..+|.+.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 6666665554332221 1 2355566666666543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.7e-07 Score=80.37 Aligned_cols=133 Identities=23% Similarity=0.213 Sum_probs=81.1
Q ss_pred cccccccccccccccCChhhcc---ccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEE
Q 047451 481 GLYALDLSYNNLSGMLPACLGN---FSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFL 555 (778)
Q Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~---~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L 555 (778)
.+..++|+.|++. .+++.... .. .|+..+|++|.+....+..-...+.+++|+|++|.| +|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~-el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGY-ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCc-eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 3556677777665 44444332 23 466667777777754444334445677777777777 77777777777777
Q ss_pred eCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 556 DLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 556 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
+++.|.+... |..+..+.+|-.|+..+|.+-.+.-+ . ......-..++.++++.+..|..
T Consensus 106 Nl~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid~d-l--~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 106 NLRFNPLNAE-PRVIAPLIKLDMLDSPENARAEIDVD-L--FYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccccCccccc-hHHHHHHHhHHHhcCCCCccccCcHH-H--hccccHHHHHhcCCcccccCccc
Confidence 7777777653 55555577777777777776543222 2 12223334455777777777654
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.02 E-value=2.9e-07 Score=93.62 Aligned_cols=281 Identities=21% Similarity=0.205 Sum_probs=169.9
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCC-CCCCCchhhcCCCCCCEEECCCCC-CCccCch-hhhCCCC
Q 047451 59 GHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNF-NFSEIPSEILNFSRLTHLNLSRSY-FSGQIPA-ELLELSN 135 (778)
Q Consensus 59 ~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~-~l~~l~~ 135 (778)
++++.|.++|+.-.+.-+.-.....++++++|++.++.. +....-..-..+++|++|+|..|. +++..-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 678899999886554433322456789999999999863 222122223468999999999954 5543333 2346999
Q ss_pred CCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhh----cCCCCCCEEEcccCc-CCCCC-Chh
Q 047451 136 LEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL----ANLSSLHFLSLSGCR-LQGEF-PQE 209 (778)
Q Consensus 136 L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~-~~~ 209 (778)
|++|+++.+. .+....+.....+++.++.+.+.+|.-.+ ...+ +.+..+..+++.+|. +++.- ...
T Consensus 218 L~~lNlSwc~------qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i 289 (483)
T KOG4341|consen 218 LKYLNLSWCP------QISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI 289 (483)
T ss_pred HHHhhhccCc------hhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHH
Confidence 9999999994 22224566677888888888777654221 2222 234556666666664 22211 111
Q ss_pred hcCCCCCCEEecccCCCCcccCC-C-CCCCCCCCEEeccCCc-CCccCcccc-cCCCCCCeEeccCCCCCccc-CCcccc
Q 047451 210 IFQLPNLQFLGVMKNPNLTGYLP-Q-FQKSSPLEDLRLSYTR-FSGKIPSSL-GNLTKLEDLYLSGGNGFSNE-LPPSIG 284 (778)
Q Consensus 210 l~~l~~L~~L~L~~n~~~~~~~~-~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~~n~l~~~-~~~~l~ 284 (778)
-..+..|+.++.+++.......- + -.+..+|+.+-++.++ ++..-...+ .+++.|+.+++..+-.+++. +...-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 23577888888888744333222 2 3456889999998886 333222223 36788999999875554443 222234
Q ss_pred CCCCCCeecccccccCCch-----hhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCC
Q 047451 285 NLASLKTLEISSFNFSGTL-----QASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCN 349 (778)
Q Consensus 285 ~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~ 349 (778)
+++.|+.+.+++|...... ...-..+..|+.+.++++... ....++.+..+++|+.+++-+++
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i--~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI--TDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc--hHHHHHHHhhCcccceeeeechh
Confidence 6788999999988643221 111233556777777776543 22233455566666666665553
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.85 E-value=1.2e-06 Score=75.43 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=78.7
Q ss_pred hhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCC
Q 047451 476 ICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLK 553 (778)
Q Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~ 553 (778)
+.....|+..+|++|.+. .+|..|....+.++.|++++|.|++ +|+.+..++.|+.|+++.|.+ .|..+..+.+|-
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 334456777788898888 5666665444368889999999984 566688889999999999988 788888888889
Q ss_pred EEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 554 FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 554 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
.||..+|.+..+.-+.|. -+..-..++.++.+.+.
T Consensus 127 ~Lds~~na~~eid~dl~~-s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 127 MLDSPENARAEIDVDLFY-SSLPALIKLGNEPLGDE 161 (177)
T ss_pred HhcCCCCccccCcHHHhc-cccHHHHHhcCCccccc
Confidence 999999988776555332 12222334466666544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.9e-05 Score=55.08 Aligned_cols=38 Identities=39% Similarity=0.613 Sum_probs=23.2
Q ss_pred CCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCc
Q 047451 110 SRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDN 148 (778)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~ 148 (778)
++|++|++++|+|+ .+|..+++|++|++|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35666777777766 455556677777777777776544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=8.2e-05 Score=78.22 Aligned_cols=15 Identities=13% Similarity=-0.079 Sum_probs=7.6
Q ss_pred cccccEEeccCCcCC
Q 047451 382 QDQLISLDLSSNMIA 396 (778)
Q Consensus 382 l~~L~~L~Ls~n~l~ 396 (778)
+..++.|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 344555555555444
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.6e-05 Score=54.38 Aligned_cols=39 Identities=46% Similarity=0.660 Sum_probs=24.2
Q ss_pred CCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 550 VKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
++|++|++++|+|+++ |..++++++|++|++++|+|+.+
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCC
Confidence 3567777777777654 33466777777777777776643
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=3.2e-05 Score=88.38 Aligned_cols=136 Identities=23% Similarity=0.293 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCE
Q 047451 59 GHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEV 138 (778)
Q Consensus 59 ~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 138 (778)
.++++||++|......-....--..||.|++|.+++-.+...++.....++++|+.||+|+++++.. ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3566666665433211100012234566666666665554333333345566666666666666532 44666666666
Q ss_pred EECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCc--c----hhhcCCCCCCEEEcccCcCC
Q 047451 139 LDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTV--P----HTLANLSSLHFLSLSGCRLQ 203 (778)
Q Consensus 139 L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~--~----~~~~~l~~L~~L~Ls~n~l~ 203 (778)
|.+.+=.+... ..+ ..+-++++|++||+|........ . +.-..+|+|+.||.|++.+.
T Consensus 200 L~mrnLe~e~~------~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESY------QDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCch------hhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 66654433221 111 22334666666666654433211 1 11123556666666655554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.8e-05 Score=87.75 Aligned_cols=134 Identities=25% Similarity=0.329 Sum_probs=74.1
Q ss_pred CCCCEEECCCCCCC-ccCchhhh-CCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhc
Q 047451 110 SRLTHLNLSRSYFS-GQIPAELL-ELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLA 187 (778)
Q Consensus 110 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 187 (778)
.+|++||+++...- ..-|..++ .||.|+.|.+++-.+.. ..+.....++++|..||+++.+++.. ..++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-------~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-------DDFSQLCASFPNLRSLDISGTNISNL--SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-------hhHHHHhhccCccceeecCCCCccCc--HHHh
Confidence 45777777775432 12223333 36777777777643221 33445566777777777777776654 5566
Q ss_pred CCCCCCEEEcccCcCCC-CCChhhcCCCCCCEEecccCCCCccc------CCCCCCCCCCCEEeccCCcCCc
Q 047451 188 NLSSLHFLSLSGCRLQG-EFPQEIFQLPNLQFLGVMKNPNLTGY------LPQFQKSSPLEDLRLSYTRFSG 252 (778)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~------~~~~~~l~~L~~L~L~~n~l~~ 252 (778)
++++|+.|.+.+=.+.. ..-..++.+++|+.||++........ ...-..+++|+.||.+++.+..
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 77777777666655542 12234666777777777665322222 0112234555555555555443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00022 Score=75.12 Aligned_cols=52 Identities=12% Similarity=0.273 Sum_probs=22.4
Q ss_pred ccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCC
Q 047451 361 KFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYN 419 (778)
Q Consensus 361 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 419 (778)
+++.|++++|.++.+|. -.++|++|.++++.-...+|..+ ..+|++|++++|
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCc
Confidence 34444444444444441 12245555555543322344322 234555555555
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00017 Score=66.82 Aligned_cols=84 Identities=24% Similarity=0.219 Sum_probs=48.6
Q ss_pred ccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEE
Q 047451 361 KFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALD 440 (778)
Q Consensus 361 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 440 (778)
+...+|+++|.+..++ .|..+++|.+|.+.+|+|+..-|.... .++.|+.|.+.+|.+..+..-.+...+|.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3444555555554443 244556666666666666633333222 4456666666666666666555566666777777
Q ss_pred cCCCcCc
Q 047451 441 LRFNKLQ 447 (778)
Q Consensus 441 L~~n~l~ 447 (778)
+-+|+.+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 7666655
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00013 Score=67.64 Aligned_cols=124 Identities=23% Similarity=0.218 Sum_probs=65.8
Q ss_pred cccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCC
Q 047451 483 YALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGD 559 (778)
Q Consensus 483 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~ 559 (778)
+.+++.+.++.. .+.++....+...+||++|.+... ..|..++.|.+|.+.+|+| .|.--.-++.|+.|.|.+
T Consensus 22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccc--hhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 455666555541 112333333566677777777643 4566666666666666666 233333355566666666
Q ss_pred CcCCCCC-cccccCCCCCCEEEccCccccccCC-CCccccccCcCcEEEcCCC
Q 047451 560 NQITDFF-PSWLGTLPELEVLILKSNNFHGVIE-EPNACFEFVKLRIIDLSHN 610 (778)
Q Consensus 560 N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~l~~L~~L~ls~N 610 (778)
|.|.... -+-+..+|.|++|.+-+|++....- .......+|+|+.||..+=
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6665431 1234556666666666666543211 0112245666666666553
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00058 Score=66.24 Aligned_cols=62 Identities=27% Similarity=0.373 Sum_probs=36.0
Q ss_pred cCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCC--CCCccCchhhhCCCCCCEEECcCCCCC
Q 047451 83 QLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRS--YFSGQIPAELLELSNLEVLDLSFNTFD 147 (778)
Q Consensus 83 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~i~ 147 (778)
.+..|+.|++.+..++.. ..+..+++|++|.+|.| ++.+.++.-...+++|++|++++|+|.
T Consensus 41 ~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344555555555554322 33455666777777777 555555544455577777777777654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.91 E-value=0.0023 Score=57.23 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=12.4
Q ss_pred hhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEccc
Q 047451 162 AENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSG 199 (778)
Q Consensus 162 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 199 (778)
|.++++|+.+.+.. .+......+|.++++|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 33444444444442 23333334444444444444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.90 E-value=0.0027 Score=56.80 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=38.2
Q ss_pred hhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCC
Q 047451 185 TLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKL 264 (778)
Q Consensus 185 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 264 (778)
+|.++++|+.+.+.. .+.......|..+++|+.+.+.++ ........|.++++++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444555555442 233233333444444555544443 2222222444444455555543 2222233344445555
Q ss_pred CeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCC
Q 047451 265 EDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQL 313 (778)
Q Consensus 265 ~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (778)
+.+.+.. + +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETT-T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCc-c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555532 1 332333334443 455554443 2222333444444443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.00084 Score=65.15 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=18.9
Q ss_pred CCCCCEEeCCCCcCCCCC-cccccCCCCCCEEEccCccccc
Q 047451 549 CVKLKFLDLGDNQITDFF-PSWLGTLPELEVLILKSNNFHG 588 (778)
Q Consensus 549 l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~ 588 (778)
+++|++|++++|+|..+. -..+..+.+|..|++.+|..+.
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 355555555555554310 0123344455555555555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.00034 Score=67.88 Aligned_cols=87 Identities=16% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCC--chhcccccccE
Q 047451 310 LTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFP--SFLHNQDQLIS 387 (778)
Q Consensus 310 l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp--~~l~~l~~L~~ 387 (778)
+.+.++|++.+|.+.++ .....++.|++|.|+-|+++...++..+++|++|+|..|.|..+. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44567777777776633 255678888999999998888888888999999999999988776 46788899999
Q ss_pred EeccCCcCCCCCch
Q 047451 388 LDLSSNMIAGKIPE 401 (778)
Q Consensus 388 L~Ls~n~l~~~~~~ 401 (778)
|.|..|...+.-+.
T Consensus 93 LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQ 106 (388)
T ss_pred HhhccCCcccccch
Confidence 99999988766554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.49 E-value=0.00076 Score=75.87 Aligned_cols=132 Identities=28% Similarity=0.293 Sum_probs=76.2
Q ss_pred cCCCCCEEeCCCCC-CCCCCCchhhcCCCCCCEEECCCC-CCCccCc----hhhhCCCCCCEEECcCCC-CCcccccccC
Q 047451 83 QLVHLQRLSLFDNN-FNFSEIPSEILNFSRLTHLNLSRS-YFSGQIP----AELLELSNLEVLDLSFNT-FDNFFLKLQK 155 (778)
Q Consensus 83 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~ 155 (778)
.++.|+.|.+.++. +....+-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~------ 259 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI------ 259 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch------
Confidence 46788888887774 322212344566788888888873 2211111 223456788888888876 4433
Q ss_pred CchhHHhhcCCCCCEEEccCcc-CCCCcch-hhcCCCCCCEEEcccCcCCCC--CChhhcCCCCCCEEec
Q 047451 156 PGLANLAENLTNLKALDLINVH-ISSTVPH-TLANLSSLHFLSLSGCRLQGE--FPQEIFQLPNLQFLGV 221 (778)
Q Consensus 156 ~~l~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L 221 (778)
.+......+++|++|.+.++. ++...-. ....+++|++|++++|..... +......+++|+.+.+
T Consensus 260 -~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 260 -GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred -hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 333444457888888877776 4443322 234567788888887765311 2222334555555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.0008 Score=75.69 Aligned_cols=237 Identities=25% Similarity=0.226 Sum_probs=112.0
Q ss_pred CCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCc-cCCCCc----chhhcCCCCCCEEEcccCc-CCCCC
Q 047451 133 LSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINV-HISSTV----PHTLANLSSLHFLSLSGCR-LQGEF 206 (778)
Q Consensus 133 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~ 206 (778)
++.|+.|.+..+.- +....+......+++|+.|+++++ ...... ......+.+|+.|+++.+. ++...
T Consensus 187 ~~~L~~l~l~~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSK------ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhccccc------CChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 56666666665521 001123445556666666666652 111111 1223345666777776666 44332
Q ss_pred Chhhc-CCCCCCEEecccCCCCccc-CC-CCCCCCCCCEEeccCCcCC-c-cCcccccCCCCCCeEeccCCCCCcccCCc
Q 047451 207 PQEIF-QLPNLQFLGVMKNPNLTGY-LP-QFQKSSPLEDLRLSYTRFS-G-KIPSSLGNLTKLEDLYLSGGNGFSNELPP 281 (778)
Q Consensus 207 ~~~l~-~l~~L~~L~L~~n~~~~~~-~~-~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L~L~~~n~l~~~~~~ 281 (778)
-..+. .+++|+.|.+.++..++.. +. ....++.|++|+++++... + .......++++++.|.+.....
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------- 333 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG------- 333 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------
Confidence 22333 2667777776666322211 11 3345666777777766542 1 1222234466666665543111
Q ss_pred cccCCCCCCeecccccccC---CchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCC
Q 047451 282 SIGNLASLKTLEISSFNFS---GTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPN 358 (778)
Q Consensus 282 ~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 358 (778)
++.++.+.+.+.... .........++.++.+.+..+......- ...+..++.|+ ..+..+.. .
T Consensus 334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~l~gc~~l~-~~l~~~~~-------~ 399 (482)
T KOG1947|consen 334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--ELSLRGCPNLT-ESLELRLC-------R 399 (482)
T ss_pred ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--HHHhcCCcccc-hHHHHHhc-------c
Confidence 344555555443331 1223345566777777777666322210 11344555552 22211110 1
Q ss_pred CcccceeeccccCCCCCC--chhcc-cccccEEeccCCcCC
Q 047451 359 TQKFEIIGLRSCNLSEFP--SFLHN-QDQLISLDLSSNMIA 396 (778)
Q Consensus 359 ~~~L~~L~L~~n~l~~lp--~~l~~-l~~L~~L~Ls~n~l~ 396 (778)
...++.|+++.+...... ..... +..+..+++.++...
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 111666777666544222 11111 566777777776543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.00045 Score=67.11 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=38.0
Q ss_pred CCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEec
Q 047451 337 LNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNL 416 (778)
Q Consensus 337 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~L 416 (778)
+.+.+.|+.-+|.+.+.......+.|+.|.|+-|+|+++. .+..|++|++|+|..|.|. .+.+.....++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence 3444555555555555444444555555555555555443 2444555555555555544 3333322224444444444
Q ss_pred cCC
Q 047451 417 SYN 419 (778)
Q Consensus 417 s~n 419 (778)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 433
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.59 E-value=0.00018 Score=78.77 Aligned_cols=189 Identities=24% Similarity=0.258 Sum_probs=93.0
Q ss_pred CCEEECCCCCCCccCch----hhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcC-CCCCEEEccCccCCCC----c
Q 047451 112 LTHLNLSRSYFSGQIPA----ELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENL-TNLKALDLINVHISST----V 182 (778)
Q Consensus 112 L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l-~~L~~L~L~~n~l~~~----~ 182 (778)
+..|.|.+|.+...... .+.....|+.|++++|.+.+... ..+...+... ..+++|++..|.++.. +
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~----~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGA----RLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhH----HHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 67778888877654332 34456777778888876653211 1122222232 4455566666655542 2
Q ss_pred chhhcCCCCCCEEEcccCcCCC----CCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccC----
Q 047451 183 PHTLANLSSLHFLSLSGCRLQG----EFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKI---- 254 (778)
Q Consensus 183 ~~~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---- 254 (778)
...+.....++.++++.|.+.. .++..+.. .+....++++|++.+|.++...
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~--------------------~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALES--------------------AASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhh--------------------hhcccccHHHHhhhhcCcChHHHHHH
Confidence 3344445566666666665431 01111111 1223445555555555554211
Q ss_pred cccccCCCC-CCeEeccCCCCCcccC----CccccCC-CCCCeecccccccCCc----hhhhccCCCCCCcccccccccC
Q 047451 255 PSSLGNLTK-LEDLYLSGGNGFSNEL----PPSIGNL-ASLKTLEISSFNFSGT----LQASLGNLTQLDSLTISDSNFS 324 (778)
Q Consensus 255 ~~~~~~l~~-L~~L~L~~~n~l~~~~----~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 324 (778)
...+...+. +.++++.. |.+.+.. ...+... ..++.++++.|.++.. ....+..++.++++.++.|.+.
T Consensus 225 ~~~l~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 112222333 44566654 4444321 1223333 4566677777766543 2334445566777777766655
Q ss_pred C
Q 047451 325 G 325 (778)
Q Consensus 325 ~ 325 (778)
.
T Consensus 304 ~ 304 (478)
T KOG4308|consen 304 D 304 (478)
T ss_pred c
Confidence 3
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0045 Score=35.80 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=9.3
Q ss_pred CCeecCCCCccccccchhhh
Q 047451 703 LRTLNLSNNNLQVFLSPFFI 722 (778)
Q Consensus 703 l~~l~ls~n~l~~~~p~~~~ 722 (778)
|++||+++|+++ .||.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4554443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.61 E-value=0.00071 Score=74.17 Aligned_cols=82 Identities=30% Similarity=0.330 Sum_probs=39.9
Q ss_pred cccEEECCCCccccc----CcccccCCCC-ccEEECCCCcc-------ChhhhhCC-CCCCEEeCCCCcCCCCCcc----
Q 047451 506 QLWVLKLQGNKFHGF----IPETFNKGTN-LRMIDFSNNLL-------VPKSLANC-VKLKFLDLGDNQITDFFPS---- 568 (778)
Q Consensus 506 ~L~~L~Ls~n~l~~~----~~~~~~~l~~-L~~L~L~~N~l-------~~~~l~~l-~~L~~L~Ls~N~l~~~~~~---- 568 (778)
++++|++++|.++.. ....+...++ +..|++.+|.+ ....+..+ ..++.++++.|.|++....
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 455555555555421 1122333333 44456666655 12233333 4556666666666654332
Q ss_pred cccCCCCCCEEEccCcccc
Q 047451 569 WLGTLPELEVLILKSNNFH 587 (778)
Q Consensus 569 ~~~~l~~L~~L~Ls~N~l~ 587 (778)
.+..++.++++.++.|++.
T Consensus 285 ~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHhhhHHHHHhhcccCccc
Confidence 2334455666666666654
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.48 E-value=0.021 Score=32.99 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=17.8
Q ss_pred cccEEEccCCcccccCchhccCC
Q 047451 678 LITATILSNNSFVGEIPTSISNL 700 (778)
Q Consensus 678 ~l~~l~ls~n~l~~~~p~~~~~l 700 (778)
+|+.||+++|+|+ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4789999999999 788777654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.68 E-value=0.11 Score=31.29 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=17.3
Q ss_pred cCcCcEEEcCCCcCCCCCChHHHh
Q 047451 599 FVKLRIIDLSHNRFAGNLPSKHFE 622 (778)
Q Consensus 599 l~~L~~L~ls~N~l~~~ip~~~~~ 622 (778)
+++|+.|+|++|+++ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 78877654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.68 E-value=0.11 Score=31.29 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=17.3
Q ss_pred cCcCcEEEcCCCcCCCCCChHHHh
Q 047451 599 FVKLRIIDLSHNRFAGNLPSKHFE 622 (778)
Q Consensus 599 l~~L~~L~ls~N~l~~~ip~~~~~ 622 (778)
+++|+.|+|++|+++ .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 357788888888887 78877654
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.25 E-value=0.079 Score=28.31 Aligned_cols=13 Identities=54% Similarity=0.894 Sum_probs=5.3
Q ss_pred cCcEEEcCCCcCC
Q 047451 601 KLRIIDLSHNRFA 613 (778)
Q Consensus 601 ~L~~L~ls~N~l~ 613 (778)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.96 E-value=0.0061 Score=57.88 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=59.5
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCC
Q 047451 58 TGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLE 137 (778)
Q Consensus 58 ~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 137 (778)
..+++.||++.+.+...-. .|+.++.+..||++.|.+. .+|..++....++.+++..|..+ ..|.++...++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 4678888888777643322 5666777778888877763 26777777777888888777776 6777788888888
Q ss_pred EEECcCCC
Q 047451 138 VLDLSFNT 145 (778)
Q Consensus 138 ~L~Ls~n~ 145 (778)
++++.+|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 88887774
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.49 E-value=0.23 Score=29.90 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCcCCCCCcccc
Q 047451 550 VKLKFLDLGDNQITDFFPSWL 570 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~~~~~~~ 570 (778)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666544444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.49 E-value=0.23 Score=29.90 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=12.3
Q ss_pred CCCCEEeCCCCcCCCCCcccc
Q 047451 550 VKLKFLDLGDNQITDFFPSWL 570 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~~~~~~~ 570 (778)
++|++|+|++|+|+.+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666544444
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=0.047 Score=51.15 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccC-CCCCCeeccccc-ccCCchhhhccCCCCCCc
Q 047451 238 SPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGN-LASLKTLEISSF-NFSGTLQASLGNLTQLDS 315 (778)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~-l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~ 315 (778)
..++.+|-+++.|..+-.+.+.+++.++.|.+.+|..+.+.-.+.+++ .++|+.|++++| +|++..-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 347788888888777767777778888888888766665443333333 467888888877 355555556666777777
Q ss_pred ccccc
Q 047451 316 LTISD 320 (778)
Q Consensus 316 L~L~~ 320 (778)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77664
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.91 E-value=0.22 Score=46.77 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhcccccc
Q 047451 549 CVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMK 628 (778)
Q Consensus 549 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~ 628 (778)
-..++.+|-++..|....-+.+.+++.++.|.+.+|.--+-.--.....-.++|+.|++++|+=..+---.++..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34566777777777766666667777777777777753211000001124578999999988733244445666777777
Q ss_pred ccccCCccccc
Q 047451 629 DVNANNLTYLQ 639 (778)
Q Consensus 629 ~l~~~~~~~l~ 639 (778)
.|.+.++++..
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 77766665543
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.67 E-value=0.43 Score=28.05 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=10.8
Q ss_pred CCCCeecCCCCccccccchh
Q 047451 701 KGLRTLNLSNNNLQVFLSPF 720 (778)
Q Consensus 701 ~~l~~l~ls~n~l~~~~p~~ 720 (778)
++|+.|++++|++++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666777777666544443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.31 E-value=0.05 Score=51.89 Aligned_cols=79 Identities=22% Similarity=0.220 Sum_probs=41.1
Q ss_pred ccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCc
Q 047451 507 LWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSN 584 (778)
Q Consensus 507 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 584 (778)
.+.||++.|++.. ....|+.++.|..|+++.|++ .|..+..+..++.+++-.|..+. .|.+++..+.++++++.+|
T Consensus 44 ~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 44 VTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchhhhccC
Confidence 4445555555432 223344445555555555555 55555555555555555555544 3455555566666665555
Q ss_pred ccc
Q 047451 585 NFH 587 (778)
Q Consensus 585 ~l~ 587 (778)
.+.
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 543
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.09 E-value=11 Score=40.43 Aligned_cols=63 Identities=25% Similarity=0.047 Sum_probs=32.5
Q ss_pred CCCEEECCCCCCCccCchhhhCC---CCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccC
Q 047451 111 RLTHLNLSRSYFSGQIPAELLEL---SNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHI 178 (778)
Q Consensus 111 ~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l 178 (778)
.+.+++|+.|...+.+|..+..+ .-++.++.+...|.- ....-+-..+.-++++..+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirl-----D~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRL-----DLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccch-----hhcccccccccccccchhhhccCCC
Confidence 36677777777766666544332 245666666654321 1111122233445666666665543
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=75.89 E-value=1.5 Score=56.96 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=29.8
Q ss_pred EccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 580 ILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 580 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
||++|+|+.+.+..| ..+++|+.|+|++|+|.|.|...||..|-
T Consensus 1 DLSnN~LstLp~g~F--~~L~sL~~LdLsgNPw~CDC~L~WL~~WL 44 (2740)
T TIGR00864 1 DISNNKISTIEEGIC--ANLCNLSEIDLSGNPFECDCGLARLPRWA 44 (2740)
T ss_pred CCCCCcCCccChHHh--ccCCCceEEEeeCCccccccccHHHHHHH
Confidence 466677766555444 56677777777777777777777777664
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.43 E-value=13 Score=39.85 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=22.5
Q ss_pred ccEEeccCCcCCCCCchhHH-hcCCCCccEEeccCCccccccC
Q 047451 385 LISLDLSSNMIAGKIPEWLF-SAGTNSLQYLNLSYNLLMHFEH 426 (778)
Q Consensus 385 L~~L~Ls~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~ 426 (778)
+..+.++.|.........+. ....+.+..|++++|.......
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~ga 457 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGA 457 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCC
Confidence 55666666665533222221 1134567777777776655443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.55 E-value=3.3 Score=25.00 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=6.4
Q ss_pred CCCEEeCCCCcCC
Q 047451 551 KLKFLDLGDNQIT 563 (778)
Q Consensus 551 ~L~~L~Ls~N~l~ 563 (778)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555555543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.98 E-value=2 Score=46.74 Aligned_cols=37 Identities=41% Similarity=0.404 Sum_probs=17.8
Q ss_pred CCCCCEEeCCCC--cCCCCCcccccC--CCCCCEEEccCcccc
Q 047451 549 CVKLKFLDLGDN--QITDFFPSWLGT--LPELEVLILKSNNFH 587 (778)
Q Consensus 549 l~~L~~L~Ls~N--~l~~~~~~~~~~--l~~L~~L~Ls~N~l~ 587 (778)
.++|+.|+|++| .+... .++.. ...|++|-+.+|++.
T Consensus 243 apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccc
Confidence 455666666666 33221 11111 223566666666654
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.53 E-value=2.9 Score=25.11 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=14.0
Q ss_pred CcCcEEEcCCCcCCCCCCh
Q 047451 600 VKLRIIDLSHNRFAGNLPS 618 (778)
Q Consensus 600 ~~L~~L~ls~N~l~~~ip~ 618 (778)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888887 6774
No 92
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=68.94 E-value=5.4 Score=26.79 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=8.4
Q ss_pred eecchhhHHHHH-Hhhhhce
Q 047451 746 VAAPHGTLTVAL-WASVGSR 764 (778)
Q Consensus 746 ~~~~~~~~~~~~-~~~~~~~ 764 (778)
|+++++++++++ ++++.||
T Consensus 17 VvVPV~vI~~vl~~~l~~~~ 36 (40)
T PF08693_consen 17 VVVPVGVIIIVLGAFLFFWY 36 (40)
T ss_pred EEechHHHHHHHHHHhheEE
Confidence 344444444444 4444344
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.85 E-value=6.7 Score=24.04 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=8.8
Q ss_pred CCCCEEeCCCCcCCC
Q 047451 550 VKLKFLDLGDNQITD 564 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~ 564 (778)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666643
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.11 E-value=6.8 Score=42.88 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=18.1
Q ss_pred CCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCc
Q 047451 134 SNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINV 176 (778)
Q Consensus 134 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n 176 (778)
+.+..++|++|++.++ ..+.......|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~L------d~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHL------DALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhch------hhhhHHHHhcchhheeecccc
Confidence 4455555555554433 333333444455555555555
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.51 E-value=20 Score=21.38 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=7.3
Q ss_pred CCCCeEeccCCCCCc
Q 047451 262 TKLEDLYLSGGNGFS 276 (778)
Q Consensus 262 ~~L~~L~L~~~n~l~ 276 (778)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555544444
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.56 E-value=31 Score=45.73 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=22.6
Q ss_pred eCCCCcCCCCCcccccCCCCCCEEEccCcccc
Q 047451 556 DLGDNQITDFFPSWLGTLPELEVLILKSNNFH 587 (778)
Q Consensus 556 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 587 (778)
||++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 56677777776677777777777777777664
No 97
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.70 E-value=79 Score=26.31 Aligned_cols=13 Identities=0% Similarity=-0.532 Sum_probs=5.1
Q ss_pred hHHHHHHhhhhce
Q 047451 752 TLTVALWASVGSR 764 (778)
Q Consensus 752 ~~~~~~~~~~~~~ 764 (778)
++.+++.+++||.
T Consensus 78 ~v~~lv~~l~w~f 90 (96)
T PTZ00382 78 VVGGLVGFLCWWF 90 (96)
T ss_pred HHHHHHHHHhhee
Confidence 3333333444443
Done!