Query 047451
Match_columns 778
No_of_seqs 801 out of 5006
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.2E-77 1.4E-81 704.6 45.5 649 3-720 9-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.4E-65 2.5E-69 600.0 40.4 603 59-715 100-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-56 6.5E-61 523.6 45.7 563 85-718 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-55 4.6E-60 516.4 49.4 581 88-739 7-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.7E-52 5.9E-57 483.5 40.2 518 85-625 33-572 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-51 4.4E-56 476.2 35.8 531 63-625 15-570 (606)
7 3t6q_A CD180 antigen; protein- 100.0 9.4E-51 3.2E-55 469.0 38.4 508 58-589 32-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-50 2E-54 462.3 36.0 529 87-719 13-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-50 1.1E-54 479.9 34.4 525 46-625 13-572 (844)
10 4ecn_A Leucine-rich repeat pro 100.0 2.7E-49 9.2E-54 462.9 28.8 500 3-613 266-864 (876)
11 4eco_A Uncharacterized protein 100.0 5.7E-49 2E-53 453.6 30.2 475 5-519 29-601 (636)
12 3j0a_A TOLL-like receptor 5; m 100.0 6.2E-48 2.1E-52 460.1 36.3 525 88-718 7-564 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 3.5E-47 1.2E-51 436.0 33.0 496 85-624 28-543 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-46 1.1E-50 425.9 34.9 505 46-625 3-523 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 2.8E-45 9.6E-50 420.2 34.0 513 87-719 9-536 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1E-45 3.5E-50 421.7 29.4 493 86-719 6-515 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-44 3.7E-49 410.1 28.9 467 63-625 4-494 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-44 1E-48 417.5 33.1 518 60-625 53-592 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 8.1E-43 2.8E-47 394.8 27.6 441 59-589 21-483 (520)
20 4eco_A Uncharacterized protein 100.0 8.6E-44 2.9E-48 410.4 17.4 327 254-614 239-601 (636)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-41 7.3E-46 393.4 36.0 484 59-588 76-581 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-41 8.3E-46 385.9 27.4 467 62-625 34-523 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 2.1E-41 7E-46 396.3 26.7 363 239-617 424-843 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-39 4.9E-44 371.2 26.8 463 111-719 32-515 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 4.2E-37 1.4E-41 341.9 33.6 397 169-625 13-421 (455)
26 1ogq_A PGIP-2, polygalacturona 100.0 2E-38 6.8E-43 333.0 21.6 293 1-322 1-302 (313)
27 1jl5_A Outer protein YOPM; leu 100.0 5.8E-37 2E-41 337.9 24.6 341 213-618 10-354 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 7E-37 2.4E-41 337.2 24.9 387 133-617 10-415 (454)
29 3v47_A TOLL-like receptor 5B a 100.0 4.9E-36 1.7E-40 333.3 28.4 383 136-592 12-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.2E-36 1.1E-40 332.2 25.8 365 161-627 37-401 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 8.7E-34 3E-38 312.8 30.4 357 80-525 37-394 (457)
32 1o6v_A Internalin A; bacterial 100.0 5.4E-33 1.8E-37 309.1 34.5 344 83-468 44-387 (466)
33 1o6v_A Internalin A; bacterial 100.0 2.4E-33 8.1E-38 312.0 30.3 349 188-619 44-393 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 7.8E-33 2.7E-37 309.2 23.8 325 242-624 15-344 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 9.8E-32 3.4E-36 292.0 26.9 311 82-448 42-353 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 9.7E-32 3.3E-36 292.0 23.0 321 237-627 44-366 (390)
37 2id5_A Lingo-1, leucine rich r 100.0 2.8E-31 9.7E-36 296.6 26.8 229 85-324 32-261 (477)
38 4fmz_A Internalin; leucine ric 100.0 4.3E-31 1.5E-35 282.3 26.3 306 258-613 40-346 (347)
39 3oja_B Anopheles plasmodium-re 100.0 6.2E-31 2.1E-35 301.4 28.8 348 33-448 8-359 (597)
40 4fmz_A Internalin; leucine ric 100.0 2.5E-30 8.5E-35 276.4 29.7 308 80-447 39-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.6E-31 8.8E-36 304.6 22.3 318 238-625 51-370 (597)
42 4fcg_A Uncharacterized protein 100.0 7.7E-31 2.6E-35 276.8 16.4 282 2-323 23-313 (328)
43 1xku_A Decorin; proteoglycan, 100.0 1.9E-28 6.5E-33 259.6 27.2 293 360-712 31-330 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 9.4E-32 3.2E-36 299.3 -1.7 369 85-541 3-410 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-28 5.7E-33 260.2 23.2 292 360-712 33-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 3.7E-32 1.3E-36 302.6 -7.7 399 134-617 3-444 (461)
47 1xku_A Decorin; proteoglycan, 100.0 7.4E-28 2.5E-32 255.0 25.2 288 263-633 32-327 (330)
48 1ogq_A PGIP-2, polygalacturona 100.0 5E-29 1.7E-33 261.4 15.6 246 360-613 50-304 (313)
49 2ft3_A Biglycan; proteoglycan, 100.0 9E-28 3.1E-32 254.6 23.7 82 263-351 34-115 (332)
50 3ogk_B Coronatine-insensitive 99.9 3.4E-29 1.2E-33 288.0 -0.7 435 126-612 65-550 (592)
51 2z66_A Variable lymphocyte rec 99.9 2.2E-26 7.6E-31 241.0 20.7 253 342-624 11-272 (306)
52 3zyi_A Leucine-rich repeat-con 99.9 8.2E-26 2.8E-30 250.1 23.0 253 363-625 57-315 (452)
53 2z80_A TOLL-like receptor 2, v 99.9 3.2E-26 1.1E-30 244.8 18.8 280 43-352 26-315 (353)
54 3zyj_A Leucine-rich repeat-con 99.9 8E-26 2.7E-30 249.3 21.5 253 363-625 46-304 (440)
55 4fcg_A Uncharacterized protein 99.9 5.1E-26 1.7E-30 239.9 18.4 280 33-351 31-314 (328)
56 1ozn_A Reticulon 4 receptor; N 99.9 8E-26 2.7E-30 234.1 19.0 232 363-623 14-248 (285)
57 3ogk_B Coronatine-insensitive 99.9 2.3E-28 7.8E-33 281.1 -0.8 419 80-539 68-548 (592)
58 2z66_A Variable lymphocyte rec 99.9 1.3E-25 4.5E-30 235.0 20.2 249 46-324 6-261 (306)
59 3g06_A SSPH2 (leucine-rich rep 99.9 3.8E-25 1.3E-29 250.8 24.9 267 339-726 41-309 (622)
60 2z80_A TOLL-like receptor 2, v 99.9 5.3E-26 1.8E-30 243.1 16.5 261 83-396 29-290 (353)
61 3zyj_A Leucine-rich repeat-con 99.9 2.2E-24 7.4E-29 237.8 24.4 227 85-323 64-291 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-25 1.6E-29 228.4 17.6 249 341-619 14-267 (285)
63 3zyi_A Leucine-rich repeat-con 99.9 1.8E-24 6.3E-29 239.3 23.5 227 85-323 75-302 (452)
64 1wwl_A Monocyte differentiatio 99.9 2.2E-26 7.5E-31 241.4 6.9 247 380-715 40-310 (312)
65 1wwl_A Monocyte differentiatio 99.9 4.5E-27 1.5E-31 246.6 1.6 247 82-352 40-310 (312)
66 3o53_A Protein LRIM1, AGAP0063 99.9 9.4E-26 3.2E-30 237.1 9.7 240 379-635 30-272 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-23 4E-28 238.6 25.1 146 456-625 161-308 (622)
68 2p1m_B Transport inhibitor res 99.9 9.8E-28 3.3E-32 276.0 -9.7 458 46-562 34-543 (594)
69 2p1m_B Transport inhibitor res 99.9 6.6E-27 2.2E-31 269.1 -3.9 124 260-390 209-345 (594)
70 3oja_A Leucine-rich immune mol 99.9 1.2E-24 4.1E-29 242.0 12.0 235 383-633 34-270 (487)
71 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-25 5.1E-30 235.6 3.4 264 289-617 12-280 (317)
72 3oja_A Leucine-rich immune mol 99.9 1.9E-24 6.4E-29 240.4 9.9 242 359-617 33-286 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 3.4E-23 1.2E-27 213.2 18.5 229 365-624 12-249 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 2.6E-23 8.9E-28 214.0 17.1 207 455-718 27-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 1.6E-22 5.5E-27 207.2 22.0 212 44-271 2-214 (270)
76 2o6q_A Variable lymphocyte rec 99.9 1.8E-22 6.3E-27 206.8 21.5 210 384-624 17-230 (270)
77 3rfs_A Internalin B, repeat mo 99.9 9.1E-23 3.1E-27 209.2 15.6 211 455-732 40-253 (272)
78 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.1E-27 208.3 16.5 201 383-617 19-222 (272)
79 1p9a_G Platelet glycoprotein I 99.9 3.9E-22 1.3E-26 206.1 18.8 211 379-624 6-219 (290)
80 4glp_A Monocyte differentiatio 99.9 3.9E-22 1.3E-26 208.8 15.7 223 434-715 64-308 (310)
81 3m19_A Variable lymphocyte rec 99.9 3E-21 1E-25 195.4 18.7 186 436-625 16-205 (251)
82 1p9a_G Platelet glycoprotein I 99.9 8.5E-21 2.9E-25 196.0 19.0 199 358-588 8-209 (290)
83 2ast_B S-phase kinase-associat 99.9 1.6E-22 5.6E-27 214.6 5.6 264 45-329 35-311 (336)
84 3goz_A Leucine-rich repeat-con 99.8 8.2E-22 2.8E-26 211.1 7.2 251 366-619 4-303 (362)
85 2ca6_A RAN GTPase-activating p 99.8 3.6E-22 1.2E-26 216.2 4.3 261 368-630 17-335 (386)
86 2xwt_C Thyrotropin receptor; s 99.8 4.2E-21 1.4E-25 192.8 11.8 155 454-613 29-193 (239)
87 3goz_A Leucine-rich repeat-con 99.8 3.4E-21 1.2E-25 206.3 10.2 258 64-353 3-299 (362)
88 1h6u_A Internalin H; cell adhe 99.8 3.6E-20 1.2E-24 193.3 17.6 130 476-618 103-234 (308)
89 3m19_A Variable lymphocyte rec 99.8 5.7E-20 2E-24 186.0 18.4 189 45-251 3-192 (251)
90 2ast_B S-phase kinase-associat 99.8 1.4E-21 4.9E-26 207.3 5.8 260 33-309 35-315 (336)
91 2ca6_A RAN GTPase-activating p 99.8 2.4E-21 8.2E-26 209.7 6.4 241 80-326 27-318 (386)
92 2xwt_C Thyrotropin receptor; s 99.8 2.7E-20 9.2E-25 187.0 13.0 203 372-610 23-236 (239)
93 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6E-24 188.1 19.4 196 80-325 36-231 (308)
94 2o6s_A Variable lymphocyte rec 99.8 8E-20 2.7E-24 179.2 14.8 106 506-613 29-137 (208)
95 4glp_A Monocyte differentiatio 99.8 8.2E-20 2.8E-24 191.1 14.6 235 133-395 63-306 (310)
96 2o6s_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 174.7 13.5 154 458-617 9-165 (208)
97 2v9t_B SLIT homolog 2 protein 99.8 5.2E-19 1.8E-23 174.7 14.1 159 460-624 15-176 (220)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-19 2.4E-23 173.8 14.9 161 460-626 15-179 (220)
99 4ay9_X Follicle-stimulating ho 99.8 9.5E-19 3.2E-23 186.3 15.6 199 363-589 12-217 (350)
100 3cvr_A Invasion plasmid antige 99.8 1.2E-18 3.9E-23 195.2 16.8 173 480-725 80-254 (571)
101 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.6E-23 185.9 14.7 223 110-347 30-255 (350)
102 2xot_A Amphoterin-induced prot 99.8 6.4E-19 2.2E-23 188.4 11.2 180 437-620 21-209 (361)
103 3e6j_A Variable lymphocyte rec 99.8 9E-18 3.1E-22 167.0 15.2 158 460-624 23-184 (229)
104 2xot_A Amphoterin-induced prot 99.7 6.2E-18 2.1E-22 180.7 13.7 130 483-619 21-154 (361)
105 3cvr_A Invasion plasmid antige 99.7 5.3E-18 1.8E-22 189.8 12.3 212 33-311 32-254 (571)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 1.6E-17 5.4E-22 164.0 14.2 150 438-589 15-168 (220)
107 1h6t_A Internalin B; cell adhe 99.7 1.3E-17 4.6E-22 172.2 13.0 192 385-619 26-218 (291)
108 1h6t_A Internalin B; cell adhe 99.7 4.7E-17 1.6E-21 168.1 16.8 169 80-271 41-209 (291)
109 2v9t_B SLIT homolog 2 protein 99.7 2.7E-17 9.2E-22 162.3 14.3 150 437-588 14-166 (220)
110 3e6j_A Variable lymphocyte rec 99.7 4.9E-17 1.7E-21 161.6 15.5 151 437-589 22-174 (229)
111 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.2E-22 188.3 12.5 193 383-618 21-214 (605)
112 1m9s_A Internalin B; cell inva 99.7 2.7E-16 9.1E-21 178.1 18.7 174 80-277 38-211 (605)
113 1w8a_A SLIT protein; signaling 99.7 1E-16 3.5E-21 154.5 12.4 137 483-625 11-151 (192)
114 1dce_A Protein (RAB geranylger 99.7 4.8E-19 1.6E-23 199.5 -5.3 119 506-630 442-565 (567)
115 4b8c_D Glucose-repressible alc 99.7 5.9E-18 2E-22 196.7 2.4 142 471-618 215-359 (727)
116 4ezg_A Putative uncharacterize 99.7 3E-16 1E-20 152.1 13.8 148 455-613 43-194 (197)
117 4b8c_D Glucose-repressible alc 99.7 8.6E-18 2.9E-22 195.3 2.9 220 4-280 130-358 (727)
118 4ezg_A Putative uncharacterize 99.7 2.2E-16 7.5E-21 153.0 12.0 151 407-588 42-195 (197)
119 1xeu_A Internalin C; cellular 99.7 9.2E-17 3.2E-21 163.2 9.7 172 408-619 18-190 (263)
120 2wfh_A SLIT homolog 2 protein 99.7 4.4E-16 1.5E-20 150.0 12.5 137 483-626 13-152 (193)
121 1xeu_A Internalin C; cellular 99.6 3.8E-16 1.3E-20 158.6 10.9 169 381-589 17-187 (263)
122 1dce_A Protein (RAB geranylger 99.6 3E-17 1E-21 184.8 1.1 193 407-607 347-567 (567)
123 2o6r_A Variable lymphocyte rec 99.6 4.1E-15 1.4E-19 141.4 12.7 137 482-624 9-149 (177)
124 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 142.3 9.1 135 480-618 24-164 (168)
125 2ell_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 141.9 9.3 130 458-590 26-163 (168)
126 1w8a_A SLIT protein; signaling 99.6 9.5E-15 3.2E-19 140.7 11.6 135 481-619 30-168 (192)
127 2je0_A Acidic leucine-rich nuc 99.5 5.7E-15 1.9E-19 136.0 7.8 127 480-609 17-149 (149)
128 2je0_A Acidic leucine-rich nuc 99.5 1.8E-14 6E-19 132.7 10.9 129 84-222 16-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.5 3.5E-14 1.2E-18 136.6 12.6 124 460-588 14-140 (193)
130 3sb4_A Hypothetical leucine ri 99.5 2.6E-14 8.7E-19 150.6 9.3 123 310-443 24-157 (329)
131 2o6r_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 130.2 13.0 127 460-590 11-140 (177)
132 3sb4_A Hypothetical leucine ri 99.5 4.7E-14 1.6E-18 148.6 9.6 101 237-343 225-326 (329)
133 4fs7_A Uncharacterized protein 99.5 1.4E-12 4.8E-17 140.9 19.8 151 161-319 66-216 (394)
134 3g39_A Variable lymphocyte rec 99.5 2.5E-13 8.6E-18 127.7 11.9 113 507-624 11-127 (170)
135 4fdw_A Leucine rich hypothetic 99.4 2.9E-12 9.9E-17 137.8 19.8 125 481-612 249-382 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-13 4.5E-18 130.7 8.3 135 475-613 14-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.4 2.9E-15 9.9E-20 145.2 -3.9 135 473-613 41-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-13 4.5E-18 130.7 7.5 106 480-588 42-154 (176)
139 2r9u_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 124.3 11.9 113 508-625 15-131 (174)
140 4fdw_A Leucine rich hypothetic 99.4 7.1E-12 2.4E-16 134.7 20.2 267 81-373 109-383 (401)
141 1ds9_A Outer arm dynein; leuci 99.4 2E-15 6.7E-20 146.4 -7.3 151 475-631 13-180 (198)
142 4fs7_A Uncharacterized protein 99.4 8.9E-12 3E-16 134.6 19.5 61 233-296 66-126 (394)
143 3g39_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 119.9 10.6 104 482-589 11-117 (170)
144 2r9u_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 117.9 10.6 103 483-589 15-120 (174)
145 3un9_A NLR family member X1; l 99.3 3.9E-13 1.3E-17 143.2 1.0 134 480-613 101-252 (372)
146 2ifg_A High affinity nerve gro 99.3 1.8E-11 6.2E-16 129.8 11.7 117 509-630 12-133 (347)
147 3un9_A NLR family member X1; l 99.2 8.5E-13 2.9E-17 140.5 -1.0 135 478-613 124-283 (372)
148 4gt6_A Cell surface protein; l 99.2 9.5E-10 3.2E-14 118.6 23.0 133 471-612 256-390 (394)
149 4gt6_A Cell surface protein; l 99.1 3.6E-09 1.2E-13 114.1 22.7 109 472-586 280-390 (394)
150 2ifg_A High affinity nerve gro 99.0 6.3E-10 2.1E-14 117.9 10.9 101 484-588 12-117 (347)
151 4h09_A Hypothetical leucine ri 98.9 5.8E-08 2E-12 104.0 20.3 144 474-625 211-356 (379)
152 4h09_A Hypothetical leucine ri 98.7 6.1E-07 2.1E-11 96.0 21.8 110 475-589 235-347 (379)
153 2ra8_A Uncharacterized protein 98.7 7.6E-09 2.6E-13 109.0 6.6 63 157-222 163-227 (362)
154 2ra8_A Uncharacterized protein 98.6 2.6E-08 8.8E-13 104.9 4.2 66 382-447 192-265 (362)
155 3rw6_A Nuclear RNA export fact 98.6 1.2E-09 4.2E-14 108.9 -5.8 155 45-220 76-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.5 3.2E-08 1.1E-12 93.9 2.6 120 80-203 31-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 1.5E-07 5.1E-12 89.3 5.7 118 103-224 29-161 (185)
158 3rw6_A Nuclear RNA export fact 98.4 1.5E-07 5.3E-12 93.7 3.5 100 528-631 140-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.5E-06 1.2E-10 77.6 4.0 34 111-144 62-95 (176)
160 3e4g_A ATP synthase subunit S, 97.8 4.2E-06 1.4E-10 77.1 1.7 85 238-322 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 5.9E-05 2E-09 70.8 3.0 89 524-612 65-169 (197)
162 3rfe_A Platelet glycoprotein I 97.4 0.00029 1E-08 61.8 6.9 69 553-625 11-80 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00035 1.2E-08 65.5 6.3 45 131-179 67-111 (197)
164 3rfe_A Platelet glycoprotein I 95.6 0.013 4.5E-07 51.1 5.3 55 438-492 12-67 (130)
165 2lz0_A Uncharacterized protein 42.8 30 0.001 27.8 4.6 40 254-295 12-51 (100)
166 2lz0_A Uncharacterized protein 40.2 66 0.0023 25.7 6.4 14 257-270 38-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-77 Score=704.55 Aligned_cols=649 Identities=28% Similarity=0.379 Sum_probs=569.8
Q ss_pred CcHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCcEEEEEcCCCCCccc---cCCcc
Q 047451 3 CHDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDCCLWDGVKCNEDTGHVVELDLASSCLYGS---VNSTS 79 (778)
Q Consensus 3 c~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~---~~~~~ 79 (778)
+.++||+||++||+++.++. ++++|.. +.|||.|+||.|+ +++|++|+|+++.+.|. +++
T Consensus 9 ~~~~~~~all~~k~~~~~~~----------~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~-- 71 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN----------LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS-- 71 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT----------SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH--
T ss_pred CCHHHHHHHHHHHhhCCCcc----------cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh--
Confidence 46789999999999997531 5899985 6799999999998 68999999999999987 765
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCch--hhhCCCCCCEEECcCCCCCcccccccCCc
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPA--ELLELSNLEVLDLSFNTFDNFFLKLQKPG 157 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~ 157 (778)
.+.++++|+.++++.+.+. .+|+.++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.++ ..
T Consensus 72 ~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~--------~~ 141 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--------FP 141 (768)
T ss_dssp HTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE--------CC
T ss_pred hHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC--------Cc
Confidence 8999999999999999763 2568899999999999999999998888 8999999999999999653 22
Q ss_pred hhHH-hhcCCCCCEEEccCccCCCCcchh---hcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCC
Q 047451 158 LANL-AENLTNLKALDLINVHISSTVPHT---LANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQ 233 (778)
Q Consensus 158 l~~~-~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 233 (778)
.+.. +.++++|++|++++|++++..+.. +.++++|++|++++|.+++..+. ..+++|++|++++| .+.+..+.
T Consensus 142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~ 218 (768)
T 3rgz_A 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSN-NFSTGIPF 218 (768)
T ss_dssp SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSS-CCCSCCCB
T ss_pred CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCC-cCCCCCcc
Confidence 3333 378999999999999999988877 88999999999999999876553 88999999999999 77777777
Q ss_pred CCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCC-CC
Q 047451 234 FQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNL-TQ 312 (778)
Q Consensus 234 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~ 312 (778)
+..+++|++|++++|.+++.+|..+..+++|++|++++ |.+.+..|.. .+++|++|++++|.+++.+|..+... ++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS-NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS-SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC-CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 99999999999999999999999999999999999998 8888877765 88999999999999998888888775 99
Q ss_pred CCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCC---CCCCcccceeeccccCCC-CCCchhcccc-cccE
Q 047451 313 LDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLL---VPNTQKFEIIGLRSCNLS-EFPSFLHNQD-QLIS 387 (778)
Q Consensus 313 L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~ 387 (778)
|++|++++|.+.+..|. .+..+++|++|++++|.+.+.++ +..+++|++|++++|.+. .+|..+..++ +|++
T Consensus 296 L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPP---FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp CSEEECCSSEEEECCCG---GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CCEEECcCCcCCCccch---HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 99999999999998888 78899999999999999986555 457899999999999998 8898888887 9999
Q ss_pred EeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchh--hcccceeEecC
Q 047451 388 LDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPI--SVLTSSYLVSN 465 (778)
Q Consensus 388 L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~l~~ 465 (778)
|++++|.+++.+|..+....+++|++|++++|.+++..+. .+..+++|+.|++++|++++..|..+ .++|++|++++
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 9999999998888877633478999999999999876554 46678999999999999999998877 78999999999
Q ss_pred CccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---C
Q 047451 466 NQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---V 542 (778)
Q Consensus 466 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~ 542 (778)
|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..+++|++|++++|++ +
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 999999999999999999999999999999999999998 799999999999999999999999999999999999 8
Q ss_pred hhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCE--------------------------------------------
Q 047451 543 PKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEV-------------------------------------------- 578 (778)
Q Consensus 543 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~-------------------------------------------- 578 (778)
|..+..+++|++|++++|++++.+|..+.....+..
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 999999999999999999999888887765444333
Q ss_pred --EEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCcccccc
Q 047451 579 --LILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGF 656 (778)
Q Consensus 579 --L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 656 (778)
++++.|.+.|.+|..+ ..+++|+.||+++|+++|.+|.. +++++.|+.|+++++..-..
T Consensus 611 ~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~---------------- 671 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKE-IGSMPYLFILNLGHNDISGS---------------- 671 (768)
T ss_dssp CCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGG-GGGCTTCCEEECCSSCCCSC----------------
T ss_pred cccccccceecccCchhh--hccccccEEECcCCcccccCCHH-HhccccCCEEeCcCCccCCC----------------
Confidence 3445577777777766 78899999999999999999966 88899999988876533221
Q ss_pred ccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCccccccchh
Q 047451 657 SDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQVFLSPF 720 (778)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~p~~ 720 (778)
.+..+ .-++.|+.||||+|+++|.+|..++.++.|++||+|+|+|+|.||..
T Consensus 672 -----------ip~~l-~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 672 -----------IPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp -----------CCGGG-GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred -----------CChHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 01111 22578999999999999999999999999999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-65 Score=599.95 Aligned_cols=603 Identities=28% Similarity=0.374 Sum_probs=332.6
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhh-cCCCCCCEEECCCCCCCccCchh---hhCCC
Q 047451 59 GHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEI-LNFSRLTHLNLSRSYFSGQIPAE---LLELS 134 (778)
Q Consensus 59 ~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~ 134 (778)
.++++|+|++|.+.|.++....+.++++|++|+|++|.+.+. +|..+ .++++|++|+|++|.+++..|.. +.+++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 345555555555555444333455555555555555554433 33322 45555555555555555544444 45555
Q ss_pred CCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCC
Q 047451 135 NLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLP 214 (778)
Q Consensus 135 ~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 214 (778)
+|++|++++|.++.. .+ +..+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+|..+..++
T Consensus 179 ~L~~L~Ls~n~l~~~--------~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 247 (768)
T 3rgz_A 179 ELKHLAISGNKISGD--------VD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCT 247 (768)
T ss_dssp TCCEEECCSSEEESC--------CB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCS
T ss_pred CCCEEECCCCccccc--------CC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCC
Confidence 555555555543211 11 14556666666666666555554 56666666666666666655555666666
Q ss_pred CCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCC-CCCCeEeccCCCCCcccCCccccCCCCCCeec
Q 047451 215 NLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNL-TKLEDLYLSGGNGFSNELPPSIGNLASLKTLE 293 (778)
Q Consensus 215 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~ 293 (778)
+|++|++++| .+.+..+.. .+++|++|++++|.+++.+|..+... ++|++|++++ |.+++..|..++.+++|++|+
T Consensus 248 ~L~~L~Ls~n-~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 248 ELKLLNISSN-QFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG-NHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp SCCEEECCSS-CCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS-SEEEECCCGGGGGCTTCCEEE
T ss_pred CCCEEECCCC-cccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC-CcCCCccchHHhcCCCccEEE
Confidence 6666666666 444444433 55566666666666665555555443 6666666665 555555666666666666666
Q ss_pred ccccccCCchhhh-ccCCCCCCcccccccccCCCCCcchhhhcCCC-CCcEEecCCCCCCcCCCCC----CCcccceeec
Q 047451 294 ISSFNFSGTLQAS-LGNLTQLDSLTISDSNFSGPMSSSLSWLTNLN-QLTSLNFPNCNLNEPLLVP----NTQKFEIIGL 367 (778)
Q Consensus 294 L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~----~~~~L~~L~L 367 (778)
+++|.+.+.+|.. +..+++|++|++++|.+.+..|. .+..++ +|+.|++++|.+.+..+.. .+++|++|++
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE---SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT---THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH---HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 6666665444443 55666666666666666555555 333443 5666666666555433322 1445666666
Q ss_pred cccCCC-CCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcC
Q 047451 368 RSCNLS-EFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKL 446 (778)
Q Consensus 368 ~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 446 (778)
++|.++ .+|..+..+++|++|++++|++++.+|..+. .+++|+.|++++|.+.+..+. .+..+++|++|++++|++
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQ-ELMYVKTLETLILDFNDL 478 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCcCCH-HHcCCCCceEEEecCCcc
Confidence 666655 4555566666666666666666655555554 556666666666665544332 234455666666666666
Q ss_pred cCCCCchh--hcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCccc
Q 047451 447 QGPLPIPI--SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPET 524 (778)
Q Consensus 447 ~~~~~~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 524 (778)
++..|..+ +++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-TCCEEECCSSEEESBCCGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CCCEEECCCCccCCcCChH
Confidence 66555554 45566666666666666666666666666666666666666666666555 4666666666666555555
Q ss_pred ccCCCCccEEECCCC-------------------------ccChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEE
Q 047451 525 FNKGTNLRMIDFSNN-------------------------LLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVL 579 (778)
Q Consensus 525 ~~~l~~L~~L~L~~N-------------------------~l~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 579 (778)
+.....+..+++..+ .+.+..+..++.++.++++.|.+.+..|..+..+++|++|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 544433333222210 0011112222223333444455555555555555555555
Q ss_pred EccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccc
Q 047451 580 ILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDY 659 (778)
Q Consensus 580 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 659 (778)
+|++|+++|.+|..+ +.+++|+.|++++|+++|.+|.. |++++.|+.|+++++..-..
T Consensus 638 dLs~N~l~g~ip~~l--~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~------------------- 695 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEI--GSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGR------------------- 695 (768)
T ss_dssp ECCSSCCBSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEC-------------------
T ss_pred ECcCCcccccCCHHH--hccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCc-------------------
Confidence 555555555555444 45555555555555555555543 45555555555443321110
Q ss_pred eeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCc-ccc
Q 047451 660 SLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNN-LQV 715 (778)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~-l~~ 715 (778)
.......++.|+.||+|+|+++|.||.. +.+..+....+.+|+ |+|
T Consensus 696 ---------ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 696 ---------IPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp ---------CCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred ---------CChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 0000111467999999999999999975 566677777777775 777
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-56 Score=523.61 Aligned_cols=563 Identities=20% Similarity=0.206 Sum_probs=330.8
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhc
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAEN 164 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~ 164 (778)
+++++|+|++|.+... .+..|+++++|++|+|++|.+.+..|.+|+++++|++|++++|.++.+ .+..+++
T Consensus 25 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--------~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL--------SDKTFAF 95 (680)
T ss_dssp TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC--------CTTTTTT
T ss_pred CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc--------Chhhhcc
Confidence 5667777777666543 344566667777777777766666666666677777777776654322 1224566
Q ss_pred CCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-C--CCCCCCCC
Q 047451 165 LTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-Q--FQKSSPLE 241 (778)
Q Consensus 165 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~--~~~l~~L~ 241 (778)
+++|++|++++|++.+..|..|+++++|++|++++|.+++..|..+.++++|++|++++| .+++..+ . +..+++|+
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEES
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhcccccccc
Confidence 666666666666666655566666666666666666666555555666666666666666 3333332 1 22345566
Q ss_pred EEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCcccc---CCCCCCeecccccccCCchhhhccCCCC--CCcc
Q 047451 242 DLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIG---NLASLKTLEISSFNFSGTLQASLGNLTQ--LDSL 316 (778)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L 316 (778)
+|++++|.+++..+..+..+++|+.|++.+ +.+.......+. ..++|+.|++++|.+.+..|..+.+++. |++|
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNN-VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTT-CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccc-cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 666666666655555565566666666554 333321111110 1245555555555555555555554433 5555
Q ss_pred cccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCC--CCCCcccceeeccccCCC------CCCc----hhccccc
Q 047451 317 TISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLL--VPNTQKFEIIGLRSCNLS------EFPS----FLHNQDQ 384 (778)
Q Consensus 317 ~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~L~~n~l~------~lp~----~l~~l~~ 384 (778)
++++|.+.+..+. .+..+++|++|++++|.+.+..+ +..+++|+.|++++|... .+|. .+..+++
T Consensus 254 ~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 254 DLSYNNLNVVGND---SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp ECTTSCCCEECTT---TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred ECCCCCcCccCcc---cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 5555555544444 34445555555555554443221 223333444444333211 1221 3344445
Q ss_pred ccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCC--CCchh----hccc
Q 047451 385 LISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGP--LPIPI----SVLT 458 (778)
Q Consensus 385 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~----~~~l 458 (778)
|++|++++|.+.+..+..+ ..+++|++|++++|.+... ....+ ...+
T Consensus 331 L~~L~l~~n~l~~~~~~~~---------------------------~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 331 LEHLNMEDNDIPGIKSNMF---------------------------TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp CCEEECCSCCBCCCCTTTT---------------------------TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred CCEEECCCCccCCCChhHh---------------------------ccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 5555555555544333333 3344444555544443211 11111 1356
Q ss_pred ceeEecCCccccCCchhhhcCCcccccccccccccccCC-hhhccccccccEEECCCCcccccCcccccCCCCccEEECC
Q 047451 459 SSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP-ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFS 537 (778)
Q Consensus 459 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 537 (778)
+.+++++|++++..|.+|..+++|++|++++|++.+.+| ..+..++ +|++|++++|++.+..+..|..+++|+.|+++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCT-TCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcc-cccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 666666666666667777777788888888887776555 4566666 68888888888777777777777888888888
Q ss_pred CCcc-----ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCc------cccccCcCcEEE
Q 047451 538 NNLL-----VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPN------ACFEFVKLRIID 606 (778)
Q Consensus 538 ~N~l-----~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~~~l~~L~~L~ 606 (778)
+|.+ .|..+..+++|++|++++|+++++.+..|.++++|++|++++|+++++.+..+ .+..+++|++|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 7765 56777778888888888888887777777788888888888888776532211 135677788888
Q ss_pred cCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccC
Q 047451 607 LSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSN 686 (778)
Q Consensus 607 ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~ 686 (778)
+++|+++ .+|...|.++..|+.++++++..-.. .+ .....++.|+.|++++
T Consensus 543 L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l---~~-------------------------~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 543 LESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTL---PA-------------------------SVFNNQVSLKSLNLQK 593 (680)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC---CT-------------------------TTTTTCTTCCEEECTT
T ss_pred CCCCCCC-CCCHHHcccccCcceeECCCCCCCcC---CH-------------------------hHhCCCCCCCEEECCC
Confidence 8888887 67766666666666665543211100 00 0001135677788888
Q ss_pred CcccccCchhcc-CCCCCCeecCCCCccccccc
Q 047451 687 NSFVGEIPTSIS-NLKGLRTLNLSNNNLQVFLS 718 (778)
Q Consensus 687 n~l~~~~p~~~~-~l~~l~~l~ls~n~l~~~~p 718 (778)
|++++..|..++ .+++|+.+++++|++.+.-+
T Consensus 594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 888877777776 67788888888888766544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-55 Score=516.40 Aligned_cols=581 Identities=22% Similarity=0.206 Sum_probs=435.9
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCC
Q 047451 88 QRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTN 167 (778)
Q Consensus 88 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~ 167 (778)
+.++.++++++ ++|..+. +++++|+|++|.+++..+..|.++++|++|++++|.++. ..+..++++++
T Consensus 7 ~~~~cs~~~L~--~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~ 74 (680)
T 1ziw_A 7 EVADCSHLKLT--QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--------LEPELCQKLPM 74 (680)
T ss_dssp SEEECCSSCCS--SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC--------CCTTHHHHCTT
T ss_pred CeeECCCCCcc--ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc--------cCHHHHhcccC
Confidence 35666666653 2565554 689999999999998777789999999999999997643 35677889999
Q ss_pred CCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEecc
Q 047451 168 LKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLS 246 (778)
Q Consensus 168 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~ 246 (778)
|++|++++|.+++..+..|+++++|++|++++|++++..|..+.++++|++|++++| .+.+..+ .+.++++|++|+++
T Consensus 75 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 75 LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECC
T ss_pred cCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEcc
Confidence 999999999998877778999999999999999998777778889999999999988 4554444 67788888888888
Q ss_pred CCcCCccCccccc--CCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhcc---CCCCCCccccccc
Q 047451 247 YTRFSGKIPSSLG--NLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLG---NLTQLDSLTISDS 321 (778)
Q Consensus 247 ~n~l~~~~~~~~~--~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n 321 (778)
+|.+++..+..+. .+++|++|++++ |.+++..|..+..+++|+.|++.++.+.......+. ..++|+.|++++|
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n 232 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTT-CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS
T ss_pred CCcccccCHHHhhccccccccEEECCC-CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC
Confidence 8888877666554 457788888887 777777777777788888888877766533222111 2356667777776
Q ss_pred ccCCCCCcchhhhcCCC--CCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCC
Q 047451 322 NFSGPMSSSLSWLTNLN--QLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKI 399 (778)
Q Consensus 322 ~l~~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~ 399 (778)
.+.+..+. .+..++ +|++|++++|.+.+.. |..+..+++|++|++++|++.+..
T Consensus 233 ~l~~~~~~---~~~~l~~~~L~~L~Ls~n~l~~~~---------------------~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 233 QLSTTSNT---TFLGLKWTNLTMLDLSYNNLNVVG---------------------NDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp CCCEECTT---TTGGGGGSCCCEEECTTSCCCEEC---------------------TTTTTTCTTCCEEECCSCCBSEEC
T ss_pred cccccChh---HhhccCcCCCCEEECCCCCcCccC---------------------cccccCcccccEeeCCCCccCccC
Confidence 66665555 333332 2555555555544322 234555566666666666665544
Q ss_pred chhHHhcCCCCccEEeccCCcccc------cc--CCCCCCCCCCCCEEEcCCCcCcCCCCchh--hcccceeEecCCccc
Q 047451 400 PEWLFSAGTNSLQYLNLSYNLLMH------FE--HNLPVLPWNNLGALDLRFNKLQGPLPIPI--SVLTSSYLVSNNQLT 469 (778)
Q Consensus 400 ~~~~~~~~~~~L~~L~Ls~n~l~~------~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~l~~n~l~ 469 (778)
|..+. ++++|+.|++++|.... ++ ....+..+++|++|++++|.+.+..+..+ +++++++++++|.+.
T Consensus 289 ~~~~~--~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 289 SHSLH--GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TTTTT--TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred hhhhc--CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 54444 55666666666553321 10 11245677999999999999998877666 789999999999864
Q ss_pred cC--CchhhhcC--CcccccccccccccccCChhhccccccccEEECCCCcccccCc-ccccCCCCccEEECCCCcc---
Q 047451 470 GE--IPPSICSL--NGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIP-ETFNKGTNLRMIDFSNNLL--- 541 (778)
Q Consensus 470 ~~--~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l--- 541 (778)
.. ....|..+ ++|+.|++++|++++..|..+..++ +|++|++++|.+++.+| ..|.++++|++|++++|++
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 445 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee
Confidence 32 22344433 5899999999999988888898888 79999999999987655 7899999999999999998
Q ss_pred ChhhhhCCCCCCEEeCCCCcCC--CCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCC----
Q 047451 542 VPKSLANCVKLKFLDLGDNQIT--DFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGN---- 615 (778)
Q Consensus 542 ~~~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~---- 615 (778)
.+..|..+++|+.|++++|.+. +..|..|.++++|++|++++|+++++.+..+ ..+++|++|++++|++++.
T Consensus 446 ~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTT
T ss_pred ChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh--ccccccCEEeCCCCCccccchhh
Confidence 6788999999999999999987 5678899999999999999999998877666 7899999999999999842
Q ss_pred C---ChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCccccc
Q 047451 616 L---PSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGE 692 (778)
Q Consensus 616 i---p~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~ 692 (778)
+ |...|.+++.|+.|+++++..-.. .. .....++.|+.|++++|++++.
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i---~~-------------------------~~~~~l~~L~~L~Ls~N~l~~l 575 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEI---PV-------------------------EVFKDLFELKIIDLGLNNLNTL 575 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCC---CT-------------------------TTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCC---CH-------------------------HHcccccCcceeECCCCCCCcC
Confidence 1 223477888888888765422110 00 0111256899999999999988
Q ss_pred CchhccCCCCCCeecCCCCccccccchhhh-ccc----cccccCCCccccCC
Q 047451 693 IPTSISNLKGLRTLNLSNNNLQVFLSPFFI-DFF----FFYSRCPHVLVCPS 739 (778)
Q Consensus 693 ~p~~~~~l~~l~~l~ls~n~l~~~~p~~~~-~~~----~~~~~~~~~~~~~~ 739 (778)
.+..|..+++|+.|++++|++++..|..++ .+. .....|+..|.|+.
T Consensus 576 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 888899999999999999999998887665 332 23356778888875
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-52 Score=483.47 Aligned_cols=518 Identities=18% Similarity=0.139 Sum_probs=419.0
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhc
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAEN 164 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~ 164 (778)
+++++|+|++|.+... .|..|+++++|++|+|++|.+.+..|.+|.++++|++|++++|.++.+ .|..+++
T Consensus 33 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM--------AETALSG 103 (606)
T ss_dssp TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE--------CTTTTSS
T ss_pred CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc--------Chhhhcc
Confidence 3789999999999765 577899999999999999999988899999999999999999976433 4567889
Q ss_pred CCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCC--
Q 047451 165 LTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLE-- 241 (778)
Q Consensus 165 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~-- 241 (778)
+++|++|++++|++++..+..+.++++|++|++++|.+++.....+..+++|++|++++| .++...+ .+..+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhccccee
Confidence 999999999999999877888999999999999999998654455556999999999998 5555444 677888888
Q ss_pred EEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccc-----cCCchhhhccCCC--CCC
Q 047451 242 DLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFN-----FSGTLQASLGNLT--QLD 314 (778)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~-----l~~~~~~~l~~l~--~L~ 314 (778)
+|++++|.+++..|..+.. ..|++|+++++.. .+..+..+.+++...+.... .....+..+..+. +|+
T Consensus 183 ~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~----~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN----LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp EEECTTCCCCEECTTTTTT-CEEEEEECTTCSC----HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred EEecCCCccCccChhHhhh-ccccccccCCchh----HHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 8899999998777766654 6889999987331 22233333333222222111 1112233344333 688
Q ss_pred cccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcC-CCCCCCcccceeeccccCCCCC-CchhcccccccEEeccC
Q 047451 315 SLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEP-LLVPNTQKFEIIGLRSCNLSEF-PSFLHNQDQLISLDLSS 392 (778)
Q Consensus 315 ~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~Ls~ 392 (778)
.|++++|.+.+..+. .+..+++|++|++++|.+... .....+++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 258 ~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 258 SINLQKHYFFNISSN---TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEECTTCCCSSCCTT---TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred EEEeecCccCccCHH---HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 899999988887776 677888999999999988752 2234678899999999998866 46788899999999999
Q ss_pred CcCCCCCchhHHhcCCCCccEEeccCCccccccC-CCCCCCCCCCCEEEcCCCcCcCCCCchh--hcccceeEecCCccc
Q 047451 393 NMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEH-NLPVLPWNNLGALDLRFNKLQGPLPIPI--SVLTSSYLVSNNQLT 469 (778)
Q Consensus 393 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~l~~n~l~ 469 (778)
|.+.+.++...+ ..+++|++|++++|.+.+... ...+..+++|++|++++|++.+..+..+ +++++++++++|.++
T Consensus 335 n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 335 NTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CSSCCBCCSSTT-TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCcccccchhhh-hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 998877766422 278999999999999987752 2346778999999999999988877766 788999999999998
Q ss_pred cCCch-hhhcCCcccccccccccccccCChhhccccccccEEECCCCccccc---CcccccCCCCccEEECCCCcc---C
Q 047451 470 GEIPP-SICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGF---IPETFNKGTNLRMIDFSNNLL---V 542 (778)
Q Consensus 470 ~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~N~l---~ 542 (778)
+..+. .+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+++. .+..+..+++|++|++++|++ .
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 77654 488999999999999999988888888888 799999999999863 336789999999999999999 6
Q ss_pred hhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHh
Q 047451 543 PKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFE 622 (778)
Q Consensus 543 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~ 622 (778)
|..|..+++|++|++++|++++..|.+|.++++| .|++++|++++.++..+ ..+++|+.|++++|+++|.++..+|.
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~~~~~~ 569 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL--PILSQQRTINLRQNPLDCTCSNIYFL 569 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH--HHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc--ccCCCCCEEeCCCCCccccCCcHHHH
Confidence 7889999999999999999999999999999999 99999999998876655 67899999999999999999988887
Q ss_pred ccc
Q 047451 623 CWN 625 (778)
Q Consensus 623 ~~~ 625 (778)
.|-
T Consensus 570 ~w~ 572 (606)
T 3t6q_A 570 EWY 572 (606)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-51 Score=476.18 Aligned_cols=531 Identities=22% Similarity=0.239 Sum_probs=433.9
Q ss_pred EEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECc
Q 047451 63 ELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLS 142 (778)
Q Consensus 63 ~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 142 (778)
.++.++..++. +|. .+. +++++|+|++|.+... .+..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 15 ~~~c~~~~l~~-ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 15 TYQCMDQKLSK-VPD--DIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp EEECTTSCCSS-CCT--TSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEccCCCccc-CCC--CCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 46666766653 333 333 7899999999999754 55689999999999999999998888899999999999999
Q ss_pred CCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCC-CCChhhcCCCCCCEEec
Q 047451 143 FNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQG-EFPQEIFQLPNLQFLGV 221 (778)
Q Consensus 143 ~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L 221 (778)
+|.++.+ .|..++++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..+.++++|++|++
T Consensus 89 ~n~l~~~--------~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 89 GNPIQSF--------SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TCCCCCC--------CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred CCccccc--------ChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 9976432 46788999999999999999998888889999999999999999986 56999999999999999
Q ss_pred ccCCCCcccCC-CCCCCCCC----CEEeccCCcCCccCcccccCCCCCCeEeccCCCCCc-ccCCccccCCCCCCeeccc
Q 047451 222 MKNPNLTGYLP-QFQKSSPL----EDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFS-NELPPSIGNLASLKTLEIS 295 (778)
Q Consensus 222 ~~n~~~~~~~~-~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~-~~~~~~l~~l~~L~~L~L~ 295 (778)
++| .+++..+ .+..+.+| ++|++++|.+++..+..+... +|++|++++ |.+. +..|..+..++.++.+++.
T Consensus 161 s~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~l~l~ 237 (606)
T 3vq2_A 161 SYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NFNSSNIMKTCLQNLAGLHVHRLI 237 (606)
T ss_dssp CSS-CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEES-CCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred cCC-cceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccC-CccchhHHHHHhcccccccccccc
Confidence 999 5555544 56665555 489999999997666666555 899999998 6665 5567778889999988886
Q ss_pred ccccCCc------hhhhccCCC--CCCcccc-cccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceee
Q 047451 296 SFNFSGT------LQASLGNLT--QLDSLTI-SDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIG 366 (778)
Q Consensus 296 ~n~l~~~------~~~~l~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~ 366 (778)
.+.+... .+..+..+. .++.+++ ..+.+.+..+. +..+++|+.|++++|.+........+++|++|+
T Consensus 238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~ 313 (606)
T 3vq2_A 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK----FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLS 313 (606)
T ss_dssp EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS----CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEE
T ss_pred ccccccCCcccccChHHhhhhhhccHhheeccccccccccccc----cccCCCCCEEEecCccchhhhhccccccCCEEE
Confidence 5544321 122222222 3445555 45556655543 667889999999999887655566788999999
Q ss_pred ccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccC-CCCCCCCCCCCEEEcCCCc
Q 047451 367 LRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEH-NLPVLPWNNLGALDLRFNK 445 (778)
Q Consensus 367 L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~~~~~L~~L~L~~n~ 445 (778)
+++|.+..+|. + .+++|++|++++|...+.+ .+. .+++|++|++++|.+.+... ...+..+++|+.|++++|.
T Consensus 314 l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 314 IIRCQLKQFPT-L-DLPFLKSLTLTMNKGSISF--KKV--ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp EESCCCSSCCC-C-CCSSCCEEEEESCSSCEEC--CCC--CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred cccccCccccc-C-CCCccceeeccCCcCccch--hhc--cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 99999988884 4 8899999999999655443 222 78899999999999887631 1235567899999999999
Q ss_pred CcCCCCchh--hcccceeEecCCccccCCc-hhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccc-cC
Q 047451 446 LQGPLPIPI--SVLTSSYLVSNNQLTGEIP-PSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHG-FI 521 (778)
Q Consensus 446 l~~~~~~~~--~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~ 521 (778)
+.+.. ..+ .+++++|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..++ +|++|++++|.+++ ..
T Consensus 388 l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 388 AIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp EEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEE
T ss_pred cccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcch
Confidence 87644 333 7889999999999998877 6899999999999999999988899998888 79999999999997 47
Q ss_pred cccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccc
Q 047451 522 PETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFE 598 (778)
Q Consensus 522 ~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 598 (778)
|..|..+++|++|++++|++ .|..+.++++|++|++++|++++..|..|.++++|++|++++|+++.+.+. + ..
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~--~~ 542 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-L--QH 542 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-G--GG
T ss_pred HHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-H--hh
Confidence 88999999999999999999 678899999999999999999999999999999999999999999965443 4 67
Q ss_pred cC-cCcEEEcCCCcCCCCCChHHHhccc
Q 047451 599 FV-KLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 599 l~-~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
++ +|++|++++|++.|.++..+|..|-
T Consensus 543 l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp SCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred hcccCcEEEccCCCcccCCccHHHHHHH
Confidence 76 6999999999999999998888774
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.4e-51 Score=468.97 Aligned_cols=508 Identities=19% Similarity=0.188 Sum_probs=416.7
Q ss_pred CCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCC
Q 047451 58 TGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLE 137 (778)
Q Consensus 58 ~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 137 (778)
+..+++|+++++.+.+..+. .|.++++|++|+|++|.+... .|..|+++++|++|+|++|.+.+..|.+|+++++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp CTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 46899999999999887666 899999999999999998765 688899999999999999999988899999999999
Q ss_pred EEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCC
Q 047451 138 VLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQ 217 (778)
Q Consensus 138 ~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 217 (778)
+|++++|.|+.+ .+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 109 ~L~L~~n~i~~l--------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 109 HLFFIQTGISSI--------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp EEECTTSCCSCG--------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred EeeccccCcccC--------CcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 999999987543 234578999999999999999986555566699999999999999988888999999999
Q ss_pred --EEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccC--CCCC--cccCCccccCCC--CC
Q 047451 218 --FLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSG--GNGF--SNELPPSIGNLA--SL 289 (778)
Q Consensus 218 --~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--~n~l--~~~~~~~l~~l~--~L 289 (778)
.|++++| .+.+..+.......|++|++++|. ..+..+..+.+++...+.. .... ....+..+..+. +|
T Consensus 181 ~l~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 181 NLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp SEEEECTTC-CCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred eeEEecCCC-ccCccChhHhhhccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 8999999 667666655556789999999986 2344444444443333221 1111 111122333332 68
Q ss_pred CeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCC--CCCCCcccceeec
Q 047451 290 KTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPL--LVPNTQKFEIIGL 367 (778)
Q Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~L 367 (778)
+.|++++|.+.+..+..|..+++|++|++++|.++ ..|. .+..+++|++|++++|.+.+.. .+..+++|++|++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS---GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS---SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh---hhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 88888888888877777888888888888888887 3454 5677888888888888887643 3447788888999
Q ss_pred cccCCC-CCCc-hhcccccccEEeccCCcCCCCC--chhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCC
Q 047451 368 RSCNLS-EFPS-FLHNQDQLISLDLSSNMIAGKI--PEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRF 443 (778)
Q Consensus 368 ~~n~l~-~lp~-~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 443 (778)
++|.+. .+|. .+..+++|++|++++|.+.+.. +..+. .+++|++|++++|.+.+..+. .+..+++|+.|++++
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR--NLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAF 409 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT--TCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTT
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc--cCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCC
Confidence 888877 5653 4788899999999999887544 44444 788999999999988877554 466778999999999
Q ss_pred CcCcCCCCch-h--hcccceeEecCCccccCCchhhhcCCccccccccccccccc---CChhhccccccccEEECCCCcc
Q 047451 444 NKLQGPLPIP-I--SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGM---LPACLGNFSVQLWVLKLQGNKF 517 (778)
Q Consensus 444 n~l~~~~~~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~~~~~L~~L~Ls~n~l 517 (778)
|++.+..+.. + .+.+++|++++|.+++..|..+..+++|++|++++|++.+. .+..+..++ +|++|++++|.+
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l 488 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDL 488 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCcc
Confidence 9988776544 3 78899999999999988899999999999999999999862 335677777 799999999999
Q ss_pred cccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 518 HGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 518 ~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
++..|..|..+++|++|++++|++ .|..+..+++| +|++++|++++.+|..+..+++|++|++++|++...
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 999999999999999999999999 67899999999 999999999999999999999999999999999864
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-50 Score=462.35 Aligned_cols=529 Identities=19% Similarity=0.166 Sum_probs=389.3
Q ss_pred CCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCC
Q 047451 87 LQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLT 166 (778)
Q Consensus 87 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~ 166 (778)
-++++.+++.++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.|+.+ .+..|.+++
T Consensus 13 ~~~~~c~~~~l~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i--------~~~~~~~l~ 80 (606)
T 3vq2_A 13 NITYQCMDQKLSK--VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI--------EDKAWHGLH 80 (606)
T ss_dssp TTEEECTTSCCSS--CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTTTTTCT
T ss_pred CCceEccCCCccc--CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc--------CHHHhhchh
Confidence 4678999988853 677654 7899999999999988888999999999999999977543 456788999
Q ss_pred CCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEec
Q 047451 167 NLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRL 245 (778)
Q Consensus 167 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L 245 (778)
+|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|......+| .+.++++|++|++
T Consensus 81 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 999999999999998899999999999999999999877778899999999999999943333545 7888999999999
Q ss_pred cCCcCCccCcccccCCCCCC----eEeccCCCCCcccCCccccCCCCCCeecccccccC-CchhhhccCCCCCCcccccc
Q 047451 246 SYTRFSGKIPSSLGNLTKLE----DLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFS-GTLQASLGNLTQLDSLTISD 320 (778)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~----~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~ 320 (778)
++|.+++..+..++.+++|+ +|++++ |.+++..+..+... +|+.|++++|.+. +..|..+.+++.|+.+++..
T Consensus 161 s~n~l~~~~~~~~~~l~~L~~~l~~L~l~~-n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~ 238 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238 (606)
T ss_dssp CSSCCCEECTTTTHHHHHCTTCCCEEECTT-CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred cCCcceecChhhhhhhhccccccceeeccC-CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccc
Confidence 99999888787777666554 799988 78877666665554 7999999998876 45677788888888887765
Q ss_pred cccCCC------CCcchhhhcCCCCCcEEec-CCCCCCcCCC-CCCCcccceeeccccCCCCCCchhcccccccEEeccC
Q 047451 321 SNFSGP------MSSSLSWLTNLNQLTSLNF-PNCNLNEPLL-VPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSS 392 (778)
Q Consensus 321 n~l~~~------~~~~~~~l~~l~~L~~L~l-~~n~l~~~~~-~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~ 392 (778)
+.+.+. .+..+..+..+ +++.+++ ..+.+.+..+ +..+++|+.+++++|.+..+| .+..+++|++|++++
T Consensus 239 ~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 239 GEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIR 316 (606)
T ss_dssp ECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEES
T ss_pred cccccCCcccccChHHhhhhhhc-cHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEccc
Confidence 544321 11111111111 3344444 3333333221 223444444444444444444 344444444444444
Q ss_pred CcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccC-
Q 047451 393 NMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGE- 471 (778)
Q Consensus 393 n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~- 471 (778)
|.+ +.+|. + .+++|+.|++++|+..+..+....++++++++++|.+++.
T Consensus 317 n~l-~~lp~----------------------------~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 317 CQL-KQFPT----------------------------L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp CCC-SSCCC----------------------------C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEE
T ss_pred ccC-ccccc----------------------------C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCc
Confidence 444 23331 1 3455555555555333333333345555555555555544
Q ss_pred -CchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCc-ccccCCCCccEEECCCCcc---Chhhh
Q 047451 472 -IPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIP-ETFNKGTNLRMIDFSNNLL---VPKSL 546 (778)
Q Consensus 472 -~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l---~~~~l 546 (778)
.+..+..+++|++|++++|.+.+ +|..+..++ +|++|++++|.+.+..+ ..+..+++|++|++++|.+ .|..+
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCT-TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred chhhhhccCCcccEeECCCCcccc-chhhccCCC-CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 47788889999999999999884 667777777 79999999999988777 6888899999999999988 67888
Q ss_pred hCCCCCCEEeCCCCcCCC-CCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 547 ANCVKLKFLDLGDNQITD-FFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 547 ~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
..+++|++|++++|++++ ..|..|+.+++|++|++++|++++..+..+ ..+++|++|++++|++++.+|.. |.+
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~-- 519 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF--DTLHRLQLLNMSHNNLLFLDSSH-YNQ-- 519 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCSCEEGGG-TTT--
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh--cccccCCEEECCCCcCCCcCHHH-ccC--
Confidence 899999999999999987 468888999999999999999998877766 78899999999999998655533 221
Q ss_pred cccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCC-CCC
Q 047451 626 AMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLK-GLR 704 (778)
Q Consensus 626 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~-~l~ 704 (778)
++.|+.|++++|+++ .+|..+..++ +|+
T Consensus 520 --------------------------------------------------l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 520 --------------------------------------------------LYSLSTLDCSFNRIE-TSKGILQHFPKSLA 548 (606)
T ss_dssp --------------------------------------------------CTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred --------------------------------------------------CCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence 356888999999999 6777789997 599
Q ss_pred eecCCCCccccccch
Q 047451 705 TLNLSNNNLQVFLSP 719 (778)
Q Consensus 705 ~l~ls~n~l~~~~p~ 719 (778)
.+++++|++.+..|.
T Consensus 549 ~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 549 FFNLTNNSVACICEH 563 (606)
T ss_dssp EEECCSCCCCCSSTT
T ss_pred EEEccCCCcccCCcc
Confidence 999999999876663
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-50 Score=479.94 Aligned_cols=525 Identities=22% Similarity=0.196 Sum_probs=381.7
Q ss_pred CCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCcc
Q 047451 46 CCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQ 125 (778)
Q Consensus 46 ~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 125 (778)
.|.|..|.+ .+.++++|+|++|.+.+..+. +|.++++|++|+|++|.....-.|..|.++++|++|+|++|.+.+.
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 356777776 467899999999999877766 8999999999999999664442377899999999999999999988
Q ss_pred CchhhhCCCCCCEEECcCCCCCcccccccCCchhH--HhhcCCCCCEEEccCccCCCCcc-hhhcCCCCCCEEEcccCcC
Q 047451 126 IPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLAN--LAENLTNLKALDLINVHISSTVP-HTLANLSSLHFLSLSGCRL 202 (778)
Q Consensus 126 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l 202 (778)
.|.+|.++++|++|+|++|.++.. ++. .+.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDA--------VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSC--------CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CHhHccCCcccCEeeCcCCCCCcc--------cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 899999999999999999976432 222 37889999999999999988655 6799999999999999999
Q ss_pred CCCCChhhcCC--CCCCEEecccCCCCcccCC-CCCCCCC------CCEEeccCCcCCccCcccccCC---CCCCeEecc
Q 047451 203 QGEFPQEIFQL--PNLQFLGVMKNPNLTGYLP-QFQKSSP------LEDLRLSYTRFSGKIPSSLGNL---TKLEDLYLS 270 (778)
Q Consensus 203 ~~~~~~~l~~l--~~L~~L~L~~n~~~~~~~~-~~~~l~~------L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~ 270 (778)
++..+..+..+ ++|+.|++++| .+.+..+ .+..+.+ |++|++++|.+++..+..+... ..++.+.+.
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CeeCHHHcccccCCccceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 98888888877 89999999998 5555444 4555444 8999999998887777766543 567777776
Q ss_pred CC--------CCCcccCCccccCC--CCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCC
Q 047451 271 GG--------NGFSNELPPSIGNL--ASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQL 340 (778)
Q Consensus 271 ~~--------n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L 340 (778)
.+ +.+.+.....|..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+. .+..+++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---~~~~l~~L 316 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE---AFYGLDNL 316 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT---TTTTCSSC
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH---HhcCCCCC
Confidence 31 11222222233332 4566666666666655555566666666666666666555554 44455555
Q ss_pred cEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCc
Q 047451 341 TSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNL 420 (778)
Q Consensus 341 ~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 420 (778)
++|++++|.+.+.. |..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.
T Consensus 317 ~~L~Ls~N~l~~~~---------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 317 QVLNLSYNLLGELY---------------------SSNFYGLPKVAYIDLQKNHIAIIQDQTFK--FLEKLQTLDLRDNA 373 (844)
T ss_dssp CEEEEESCCCSCCC---------------------SCSCSSCTTCCEEECCSCCCCCCCSSCSC--SCCCCCEEEEETCC
T ss_pred CEEECCCCCCCccC---------------------HHHhcCCCCCCEEECCCCCCCccChhhhc--CCCCCCEEECCCCC
Confidence 55555555544321 33455555566666666655533333332 45566666666665
Q ss_pred cccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCC-chhhhcCCcccccccccccccccCChh
Q 047451 421 LMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEI-PPSICSLNGLYALDLSYNNLSGMLPAC 499 (778)
Q Consensus 421 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (778)
++.+.. +++|+.|++++|+++.. |.. ...++.+++++|.+++.. +..+..+++|++|++++|++++..+..
T Consensus 374 l~~i~~------~~~L~~L~l~~N~l~~l-~~~-~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 374 LTTIHF------IPSIPDIFLSGNKLVTL-PKI-NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp SCCCSS------CCSCSEEEEESCCCCCC-CCC-CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred CCcccC------CCCcchhccCCCCcccc-ccc-ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 554332 35666666666666533 211 345666677777666532 334568899999999999998654432
Q ss_pred -hccccccccEEECCCCccc-----ccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccc
Q 047451 500 -LGNFSVQLWVLKLQGNKFH-----GFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWL 570 (778)
Q Consensus 500 -~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 570 (778)
+...+ +|++|++++|.++ +..+..|.++++|+.|+|++|++ .|..|.++++|++|+|++|+++++.+..+
T Consensus 446 ~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 446 TPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp SSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred ccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 33444 7999999999987 44456788999999999999998 56778999999999999999999888777
Q ss_pred cCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 571 GTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 571 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
. ++|+.|++++|++++.+|..+ .+|+.+++++|++.|.|+..+|..|.
T Consensus 525 ~--~~L~~L~Ls~N~l~~~~~~~~-----~~L~~l~l~~Np~~C~c~~~~f~~~~ 572 (844)
T 3j0a_A 525 P--ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFINWL 572 (844)
T ss_dssp C--SCCCEEEEEEECCCCCCSCCC-----SSCCEEEEEEECCCCSSSCCSHHHHH
T ss_pred h--ccccEEECCCCcCCCCChhHh-----CCcCEEEecCCCcccccccHHHHHHH
Confidence 6 899999999999999877653 58999999999999999988887764
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-49 Score=462.90 Aligned_cols=500 Identities=21% Similarity=0.257 Sum_probs=297.1
Q ss_pred CcHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCC----CCCCCCcc------------CceeeCCCCCcEEEEEc
Q 047451 3 CHDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDE----KNSDCCLW------------DGVKCNEDTGHVVELDL 66 (778)
Q Consensus 3 c~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~----~~~~~c~w------------~~v~c~~~~~~v~~L~L 66 (778)
+..+|++||++||+++.++ +|+.+. ...++|.| .||.|+. .++|+.|+|
T Consensus 266 ~~~~d~~ALl~~k~~l~~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~L 330 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSL 330 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEEC
T ss_pred cchHHHHHHHHHHHHcCCC--------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEEC
Confidence 4568999999999999652 343310 01234899 9999987 589999999
Q ss_pred CCCCCccccCCccccccCCCCCEEeC-CCCCCCCCCCchhh---------------------------------------
Q 047451 67 ASSCLYGSVNSTSSLFQLVHLQRLSL-FDNNFNFSEIPSEI--------------------------------------- 106 (778)
Q Consensus 67 s~~~l~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~~~~~--------------------------------------- 106 (778)
+++.+.|.+++ .++++++|++|+| ++|.+.+. .|...
T Consensus 331 s~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 331 AGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp TTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred ccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 99999999997 9999999999999 77765433 11000
Q ss_pred ------------cCCCCCCEEECCC--CCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEE
Q 047451 107 ------------LNFSRLTHLNLSR--SYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALD 172 (778)
Q Consensus 107 ------------~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~ 172 (778)
.....++.+.+.. |.+++ +|..|+++++|++|+|++|.++...+......
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------------- 471 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------------- 471 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC---------------
T ss_pred hhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc---------------
Confidence 0011122222222 44443 45555555555555555554432000000000
Q ss_pred ccCccCCCCcchhhc--CCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcc-cCC--------CCCCCCCCC
Q 047451 173 LINVHISSTVPHTLA--NLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTG-YLP--------QFQKSSPLE 241 (778)
Q Consensus 173 L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~--------~~~~l~~L~ 241 (778)
.+.|...+.+|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|..+++ .+| .+..+++|+
T Consensus 472 ~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence 000000002454444 555555555555555555555555555555555555522443 222 233455778
Q ss_pred EEeccCCcCCccCcc--cccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCC-CCcccc
Q 047451 242 DLRLSYTRFSGKIPS--SLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQ-LDSLTI 318 (778)
Q Consensus 242 ~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L 318 (778)
.|++++|.++ .+|. .+.++++|++|++++ |.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++
T Consensus 552 ~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~-N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 552 IFYMGYNNLE-EFPASASLQKMVKLGLLDCVH-NKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp EEECCSSCCC-BCCCHHHHTTCTTCCEEECTT-SCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred EEEeeCCcCC-ccCChhhhhcCCCCCEEECCC-CCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence 8888888877 6676 788888888888887 7777 566 7778888888888888887 66777888887 888888
Q ss_pred cccccCCCCCcchhhhcCC--CCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhc--ccccccEEeccCCc
Q 047451 319 SDSNFSGPMSSSLSWLTNL--NQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLH--NQDQLISLDLSSNM 394 (778)
Q Consensus 319 ~~n~l~~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~Ls~n~ 394 (778)
++|.+. .+|. .+..+ ++|+.|++++|.+.+..+.. +..+. .+++|+.|++++|.
T Consensus 627 s~N~L~-~lp~---~~~~~~~~~L~~L~Ls~N~l~g~ip~l------------------~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 627 SHNKLK-YIPN---IFNAKSVYVMGSVDFSYNKIGSEGRNI------------------SCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CSSCCC-SCCS---CCCTTCSSCEEEEECCSSCTTTTSSSC------------------SSCTTTCCCCCEEEEECCSSC
T ss_pred cCCCCC-cCch---hhhccccCCCCEEECcCCcCCCccccc------------------hhhhccccCCCcCEEEccCCc
Confidence 888877 4454 33333 34788888888776643211 00011 12245555555555
Q ss_pred CCCCCchhHHhcCCCCccEEeccCCccccccCCCC------CCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCcc
Q 047451 395 IAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLP------VLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQL 468 (778)
Q Consensus 395 l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l 468 (778)
++ .+|..++ ..+++|+.|++++|.+..++.... ...+++|+.|++++|+++
T Consensus 685 L~-~lp~~~~-~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--------------------- 741 (876)
T 4ecn_A 685 IQ-KFPTELF-ATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--------------------- 741 (876)
T ss_dssp CC-SCCHHHH-HTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC---------------------
T ss_pred CC-ccCHHHH-ccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc---------------------
Confidence 54 3443332 134555555555555553333211 112236777777777665
Q ss_pred ccCCchhhh--cCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---Ch
Q 047451 469 TGEIPPSIC--SLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VP 543 (778)
Q Consensus 469 ~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~ 543 (778)
.+|..+. .+++|+.|+|++|++++ +|..+..++ +|+.|+|++|+ ++++|++ +|
T Consensus 742 --~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~------------------~ls~N~l~~~ip 799 (876)
T 4ecn_A 742 --SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQR------------------DAEGNRILRQWP 799 (876)
T ss_dssp --CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCB------------------CTTCCBCCCCCC
T ss_pred --cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCC------------------CcccccccccCh
Confidence 4555565 77888888888888885 677777777 68888887755 3444544 45
Q ss_pred hhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCC
Q 047451 544 KSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 544 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 613 (778)
..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++..+.+..+ .....+..+.+.+|++.
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~--~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV--CPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG--HHHHHTTCCEEECCTTS
T ss_pred HHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc--cccccchheeecCCCcc
Confidence 5566666666666666666 33444443 467777777776665544333 23334555556666554
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.7e-49 Score=453.61 Aligned_cols=475 Identities=19% Similarity=0.259 Sum_probs=354.1
Q ss_pred HHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcc---CceeeCCCCCcEEEEEcCCCCCccccCCcccc
Q 047451 5 DHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDCCLW---DGVKCNEDTGHVVELDLASSCLYGSVNSTSSL 81 (778)
Q Consensus 5 ~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~c~w---~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l 81 (778)
..|++||.++|.++..+.-. -..+.++...+|+. ..+||.| .||.|+.. ++|+.|+|+++.+.|.++. .+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~-~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l 101 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWS-QQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AI 101 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCC-CCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GG
T ss_pred HHHHHHHHHHHHHcCCCCcc-cCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HH
Confidence 37999999999998754210 00123445678997 6899999 99999865 8999999999999999997 99
Q ss_pred ccCCCCCEEeCCCCCCCCC-----------CCc---------------------hhhc-------------------CCC
Q 047451 82 FQLVHLQRLSLFDNNFNFS-----------EIP---------------------SEIL-------------------NFS 110 (778)
Q Consensus 82 ~~l~~L~~L~Ls~n~l~~~-----------~~~---------------------~~~~-------------------~l~ 110 (778)
+++++|++|+|++|.+... .+| ..+. ...
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999999965100 011 1111 011
Q ss_pred CCCEEECC--CCCCCccCchhhhCCCCCCEEECcCCCCCccccccc--C-------CchhHHhh--cCCCCCEEEccCcc
Q 047451 111 RLTHLNLS--RSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQ--K-------PGLANLAE--NLTNLKALDLINVH 177 (778)
Q Consensus 111 ~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~--~-------~~l~~~~~--~l~~L~~L~L~~n~ 177 (778)
.++.+.+. +|++++ +|.+++++++|++|+|++|.++....... . +.+|..++ ++++|++|++++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 12222222 567877 88889999999999999997643100000 0 01777777 89999999999999
Q ss_pred CCCCcchhhcCCCCCCEEEcccCc-CCC-CCChhhcCC------CCCCEEecccCCCCcccCC--CCCCCCCCCEEeccC
Q 047451 178 ISSTVPHTLANLSSLHFLSLSGCR-LQG-EFPQEIFQL------PNLQFLGVMKNPNLTGYLP--QFQKSSPLEDLRLSY 247 (778)
Q Consensus 178 l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~ 247 (778)
+.+.+|..|+++++|++|++++|+ +++ .+|..++.+ ++|++|++++| .++.... .+..+++|++|++++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcC
Confidence 988899999999999999999998 887 788888776 89999999998 5553333 488889999999999
Q ss_pred CcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCC-CCeecccccccCCchhhhccCCC--CCCcccccccccC
Q 047451 248 TRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLAS-LKTLEISSFNFSGTLQASLGNLT--QLDSLTISDSNFS 324 (778)
Q Consensus 248 n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~ 324 (778)
|.+++.+| .+..+++|++|++++ |.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+.
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~-N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAY-NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCS-SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CcCccchh-hhCCCCCCCEEECCC-Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 99988888 888889999999998 7777 67888888888 999999999988 6677776654 8999999999998
Q ss_pred CCCCcchhhhc-------CCCCCcEEecCCCCCCcCCCC---CCCcccceeeccccCCCCCCchhcc--------ccccc
Q 047451 325 GPMSSSLSWLT-------NLNQLTSLNFPNCNLNEPLLV---PNTQKFEIIGLRSCNLSEFPSFLHN--------QDQLI 386 (778)
Q Consensus 325 ~~~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~---~~~~~L~~L~L~~n~l~~lp~~l~~--------l~~L~ 386 (778)
+..|. .+. .+++|+.|++++|.+.. ++. ..+++|++|++++|.++.+|..... +++|+
T Consensus 416 ~~~p~---~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 416 SVDGK---NFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTTC---SSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred Ccchh---hhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 88777 444 67789999999998884 332 2478899999999999988854332 23899
Q ss_pred EEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCC
Q 047451 387 SLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNN 466 (778)
Q Consensus 387 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n 466 (778)
+|++++|+++ .+|..+....+++|+.|++++|.+++++. .+..+++|+.|++++|+ ++++|
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~Ls~N~----------------~ls~N 552 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPT--QPLNSSTLKGFGIRNQR----------------DAQGN 552 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCC--GGGGCSSCCEEECCSCB----------------CTTCC
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcCh--hhhcCCCCCEEECCCCc----------------ccccC
Confidence 9999999998 77776542367788888888888777433 24456777777777765 34566
Q ss_pred ccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccc
Q 047451 467 QLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHG 519 (778)
Q Consensus 467 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 519 (778)
++.+.+|..+..+++|++|++++|++ +.+|..+. + +|++|++++|++..
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~-~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P-NISVLDIKDNPNIS 601 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T-TCCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C-cCCEEECcCCCCcc
Confidence 66677777777777777777777777 36666554 3 67777777777654
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.2e-48 Score=460.15 Aligned_cols=525 Identities=20% Similarity=0.224 Sum_probs=340.7
Q ss_pred CEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCch-hHHhhcCC
Q 047451 88 QRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGL-ANLAENLT 166 (778)
Q Consensus 88 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l-~~~~~~l~ 166 (778)
+..+.++++++. +|. ..++|++|+|++|.+++..|..|.++++|++|+|++|.+. ..+ +..+.+++
T Consensus 7 ~~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L~ 73 (844)
T 3j0a_A 7 RIAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--------LTIDKEAFRNLP 73 (844)
T ss_dssp EEEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--------CEECTTTTSSCT
T ss_pred eEEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--------cccCHHHhcCCC
Confidence 456777887753 676 4578999999999999888889999999999999999431 223 56788899
Q ss_pred CCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChh--hcCCCCCCEEecccCCCCccc-CC-CCCCCCCCCE
Q 047451 167 NLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQE--IFQLPNLQFLGVMKNPNLTGY-LP-QFQKSSPLED 242 (778)
Q Consensus 167 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~-~~-~~~~l~~L~~ 242 (778)
+|++|+|++|.+.+..|..|.++++|++|++++|.+++..|.. +.++++|++|++++| .+.+. .+ .|.++++|++
T Consensus 74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCE
T ss_pred CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCE
Confidence 9999999999998888888999999999999999888766654 788888888888888 44433 32 5778888888
Q ss_pred EeccCCcCCccCcccccCC--CCCCeEeccCCCCCcccCCccccCCCC------CCeecccccccCCchhhhccCC---C
Q 047451 243 LRLSYTRFSGKIPSSLGNL--TKLEDLYLSGGNGFSNELPPSIGNLAS------LKTLEISSFNFSGTLQASLGNL---T 311 (778)
Q Consensus 243 L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~ 311 (778)
|++++|.+++..+..+..+ ++|+.|++++ |.+.+..|..++.+++ |+.|++++|.+.+..+..+... .
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAA-NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHHHCSSCCCEECC-SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EECCCCcCCeeCHHHcccccCCccceEECCC-CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 8888888877777777766 7788888877 7777766666655544 7777777777666555544332 3
Q ss_pred CCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcC--CCCC--CCcccceeeccccCCCCC-Cchhccccccc
Q 047451 312 QLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEP--LLVP--NTQKFEIIGLRSCNLSEF-PSFLHNQDQLI 386 (778)
Q Consensus 312 ~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~--~~~~L~~L~L~~n~l~~l-p~~l~~l~~L~ 386 (778)
+++.+.+..+...... ..+.+.+. ..+. ..++|+.|++++|.+..+ +..+..+++|+
T Consensus 232 ~l~~L~l~~~~~~~~~------------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 293 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGF------------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293 (844)
T ss_dssp CBSEEECCSSCCBCSS------------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCC
T ss_pred cccceecccccccccc------------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCC
Confidence 4555555432211100 00011000 0000 124555555555555533 34455566666
Q ss_pred EEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchh--hcccceeEec
Q 047451 387 SLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPI--SVLTSSYLVS 464 (778)
Q Consensus 387 ~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~l~ 464 (778)
.|++++|++.+..+..+. ++++|++|++++|.+....+. .+..+++|+.|++++|.+.+..+..+ .++|++|+++
T Consensus 294 ~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 294 VLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSS-NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp EEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSC-SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEE
T ss_pred EEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHH-HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECC
Confidence 666666666544444443 556666666666666554332 34455666666666666655444333 4555555565
Q ss_pred CCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCc-ccccCCCCccEEECCCCcc--
Q 047451 465 NNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIP-ETFNKGTNLRMIDFSNNLL-- 541 (778)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l-- 541 (778)
+|.+++. ..+++|+.|++++|+++ .+|.. .. +++.|++++|++++... ..+..+++|++|++++|++
T Consensus 371 ~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~-~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 371 DNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp TCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CT-TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred CCCCCcc-----cCCCCcchhccCCCCcc-ccccc---cc-ccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 5555531 12566677777777766 34432 12 46777777777765422 2344667777777777776
Q ss_pred C--hhhhhCCCCCCEEeCCCCcCCC-----CCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCC
Q 047451 542 V--PKSLANCVKLKFLDLGDNQITD-----FFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAG 614 (778)
Q Consensus 542 ~--~~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~ 614 (778)
. ...+..+++|+.|++++|.++. ..+..|.++++|++|+|++|.+++.++..+ ..+++|+.|+|++|++++
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF--SHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSS--SSCCSCSEEEEESCCCSS
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHc--cchhhhheeECCCCCCCc
Confidence 1 2234556777777777777763 334556677777777777777777666555 567777777777777763
Q ss_pred CCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCc
Q 047451 615 NLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIP 694 (778)
Q Consensus 615 ~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p 694 (778)
+|...+ .+.|+.||+++|++++.+|
T Consensus 519 -l~~~~~------------------------------------------------------~~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 519 -LSHNDL------------------------------------------------------PANLEILDISRNQLLAPNP 543 (844)
T ss_dssp -CCCCCC------------------------------------------------------CSCCCEEEEEEECCCCCCS
T ss_pred -cChhhh------------------------------------------------------hccccEEECCCCcCCCCCh
Confidence 332200 1367888999999998888
Q ss_pred hhccCCCCCCeecCCCCccccccc
Q 047451 695 TSISNLKGLRTLNLSNNNLQVFLS 718 (778)
Q Consensus 695 ~~~~~l~~l~~l~ls~n~l~~~~p 718 (778)
+.| .+|+.+++++|++.+..+
T Consensus 544 ~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 544 DVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCC---SSCCEEEEEEECCCCSSS
T ss_pred hHh---CCcCEEEecCCCcccccc
Confidence 765 478889999998876544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-47 Score=436.04 Aligned_cols=496 Identities=21% Similarity=0.224 Sum_probs=347.4
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhc
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAEN 164 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~ 164 (778)
+++++|+|++|.+... .+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|.++.+ .+..+.+
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~ 98 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--------ALGAFSG 98 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTTTTT
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc--------CHhhhcC
Confidence 4678888888877644 345677888888888888888776677778888888888888865432 2345677
Q ss_pred CCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCC-CCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCC--
Q 047451 165 LTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQG-EFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPL-- 240 (778)
Q Consensus 165 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L-- 240 (778)
+++|++|++++|++++..+..++++++|++|++++|.+++ .+|..+.++++|++|++++| .+....+ .+..+++|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTT
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccch
Confidence 7777777777777776655567777777777777777765 35677777777777777776 3333322 44444444
Q ss_pred --CEEeccCCcCCccCcccccCCCCCCeEeccCCCCC-cccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccc
Q 047451 241 --EDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGF-SNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317 (778)
Q Consensus 241 --~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (778)
+.+++++|.+++..+..+... +|++|++++ |.. ....+..+..++.++.+.+....+... ..
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~-n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~----- 242 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN-NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GN----- 242 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTC-EEEEEEEES-CCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SS-----
T ss_pred hhhhcccCCCCceecCHHHhccC-cceeEeccc-ccccccchhhhhcCccccceeeeccccccCc--------hh-----
Confidence 566666666665555555443 556666654 211 112233334444444433332211100 00
Q ss_pred ccccccCCCCCcchhhhcCCCCCcEEecCCC-CCCcCC--CCCCCcccceeeccccCCCCCCchhcccccccEEeccCCc
Q 047451 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNC-NLNEPL--LVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNM 394 (778)
Q Consensus 318 L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~--~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~ 394 (778)
+.......+..+..+ .++.++++++ .+.+.. .+..+++|+.|++++|.+..+|..+..+ +|++|++++|.
T Consensus 243 -----l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~ 315 (570)
T 2z63_A 243 -----LEKFDKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK 315 (570)
T ss_dssp -----CEECCTTTTGGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB
T ss_pred -----hhhcchhhhcccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc
Confidence 000111111112221 2445555554 332222 2235667777777777777777777777 88888888888
Q ss_pred CCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCC--Cchh--hcccceeEecCCcccc
Q 047451 395 IAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPL--PIPI--SVLTSSYLVSNNQLTG 470 (778)
Q Consensus 395 l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~--~~~l~~L~l~~n~l~~ 470 (778)
+. .+|.. .+++|+.|++++|.+...... ..+++|+.|++++|.+++.. +..+ .+.++++++++|.+++
T Consensus 316 ~~-~l~~~----~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 387 (570)
T 2z63_A 316 FG-QFPTL----KLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387 (570)
T ss_dssp CS-SCCBC----BCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE
T ss_pred cc-ccCcc----cccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc
Confidence 76 55542 677888888888877655432 55688888888888887653 3333 6788888999888886
Q ss_pred CCchhhhcCCcccccccccccccccCC-hhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc----Chhh
Q 047451 471 EIPPSICSLNGLYALDLSYNNLSGMLP-ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL----VPKS 545 (778)
Q Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~ 545 (778)
..+. +..+++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..|..|.++++|++|++++|.+ .|..
T Consensus 388 ~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 388 MSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT-TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred cccc-ccccCCCCEEEccCCccccccchhhhhcCC-CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 5444 8899999999999999987666 4567777 799999999999999999999999999999999987 6788
Q ss_pred hhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHh-cc
Q 047451 546 LANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFE-CW 624 (778)
Q Consensus 546 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~-~~ 624 (778)
+..+++|++|++++|++++..|.+|..+++|++|++++|++++.++..+ ..+++|+.|++++|+++|.+|..++. .|
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~w 543 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh--hcccCCcEEEecCCcccCCCcchHHHHHH
Confidence 9999999999999999999999999999999999999999999877665 78999999999999999999976554 55
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-46 Score=425.93 Aligned_cols=505 Identities=19% Similarity=0.233 Sum_probs=351.7
Q ss_pred CCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCcc
Q 047451 46 CCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQ 125 (778)
Q Consensus 46 ~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 125 (778)
.|.|.|+ |+. +++.++ .+|. .+. ++|++|+|++|.+... .|..|.++++|++|++++|++++.
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EEC----------CCCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 4889887 753 333443 2333 332 6899999999988654 467788899999999999999887
Q ss_pred CchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCC-cchhhcCCCCCCEEEcccCcCCC
Q 047451 126 IPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISST-VPHTLANLSSLHFLSLSGCRLQG 204 (778)
Q Consensus 126 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 204 (778)
.|.+|..+++|++|++++|.++. ..+..++++++|++|++++|.+++. .|..+.++++|++|++++|.+.+
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSS--------LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCS--------CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred ChhhccccccCCEEECCCCccCc--------cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc
Confidence 77888899999999999987643 3455688888888888888888763 46678888888888888887443
Q ss_pred CCC-hhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccC--C
Q 047451 205 EFP-QEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNEL--P 280 (778)
Q Consensus 205 ~~~-~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~--~ 280 (778)
.+| ..+.++++|++|++++| .+.+..+ .+..+++|++|++++|.+.......+..+++|++|++++ |.+++.. +
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~ 215 (549)
T 2z81_A 138 EIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD-TNLARFQFSP 215 (549)
T ss_dssp EECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES-CBCTTCCCCC
T ss_pred ccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC-Cccccccccc
Confidence 443 57888888888888888 5555444 777888888888888887643333345678888888887 7776542 1
Q ss_pred -ccccCCCCCCeecccccccCCchhh----hccCCCCCCcccccccccCCCCCc---chhhhcCCCCCcEEecCCCCCCc
Q 047451 281 -PSIGNLASLKTLEISSFNFSGTLQA----SLGNLTQLDSLTISDSNFSGPMSS---SLSWLTNLNQLTSLNFPNCNLNE 352 (778)
Q Consensus 281 -~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~l~~L~~L~l~~n~l~~ 352 (778)
.....+++|+.|++++|.+.+..+. .+..+++|+.+++++|.+.+.... ....+..+++++.|++.++.+..
T Consensus 216 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 295 (549)
T 2z81_A 216 LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295 (549)
T ss_dssp CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch
Confidence 2234467788888888877654433 345567788888888776543211 11123344555555555554432
Q ss_pred CCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccC--CCCC
Q 047451 353 PLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEH--NLPV 430 (778)
Q Consensus 353 ~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~ 430 (778)
.... ..++..+...++|++|++++|.+. .+|..++ ..+++|++|++++|.+.+..+ ...+
T Consensus 296 ~~~~----------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 296 FYLF----------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp GGGS----------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHH-HHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred hhhc----------------ccchhhhhhcccceEEEeccCccc-cCCHHHH-hcCccccEEEccCCccccccccchhhh
Confidence 1110 112223344567777788777775 6666553 156777777777777765432 1124
Q ss_pred CCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEE
Q 047451 431 LPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVL 510 (778)
Q Consensus 431 ~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 510 (778)
..+++|++|++++|++++..+ .+..+..+++|++|++++|+++ .+|..+..++ +|++|
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~--------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~-~L~~L 415 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQK--------------------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE-KMRFL 415 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHH--------------------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT-TCCEE
T ss_pred hccccCcEEEccCCccccccc--------------------chhhhhcCCCCCEEECCCCCCc-cCChhhcccc-cccEE
Confidence 456777788777777653110 1134677888888888888888 6777777666 68888
Q ss_pred ECCCCcccccCcccccCCCCccEEECCCCccChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccC
Q 047451 511 KLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVI 590 (778)
Q Consensus 511 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 590 (778)
++++|+++.. |..+ .++|++|++++|++... ...+++|++|+|++|+++.+ |. ...+++|++|+|++|++++.+
T Consensus 416 ~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 416 NLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp ECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCC
T ss_pred ECCCCCcccc-cchh--cCCceEEECCCCChhhh-cccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcC
Confidence 8888888743 3322 25788899998888211 25789999999999999865 44 467899999999999999987
Q ss_pred CCCccccccCcCcEEEcCCCcCCCCCC-hHHHhccc
Q 047451 591 EEPNACFEFVKLRIIDLSHNRFAGNLP-SKHFECWN 625 (778)
Q Consensus 591 ~~~~~~~~l~~L~~L~ls~N~l~~~ip-~~~~~~~~ 625 (778)
+..+ ..+++|+.|++++|+++|.+| ..++..|-
T Consensus 490 ~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l 523 (549)
T 2z81_A 490 DGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523 (549)
T ss_dssp TTGG--GGCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred HHHH--hcCcccCEEEecCCCccCCCccHHHHHHHH
Confidence 7666 789999999999999999999 35666664
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-45 Score=420.24 Aligned_cols=513 Identities=21% Similarity=0.210 Sum_probs=341.9
Q ss_pred CCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCC
Q 047451 87 LQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLT 166 (778)
Q Consensus 87 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~ 166 (778)
.++.+.++..+. ++|..+. +++++|++++|.+++..+.+|.++++|++|++++|.|+.+ .+..+.+++
T Consensus 9 ~~~~~c~~~~l~--~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i--------~~~~~~~l~ 76 (570)
T 2z63_A 9 NITYQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--------EDGAYQSLS 76 (570)
T ss_dssp TTEEECCSSCCS--SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE--------CTTTTTTCT
T ss_pred CcEEEeCCCCcc--ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc--------CcccccCch
Confidence 355666666553 3566443 5789999999999877777888999999999999876433 344677788
Q ss_pred CCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEec
Q 047451 167 NLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRL 245 (778)
Q Consensus 167 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L 245 (778)
+|++|++++|++++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.......| .+.++++|++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 888888888888777777888888888888888887754444577777777777777732222333 5666667777777
Q ss_pred cCCcCCccCcccccCCCCC----CeEeccCCCCCcccCCccccCCCCCCeecccccccCC-chhhhccCCCCCCcccccc
Q 047451 246 SYTRFSGKIPSSLGNLTKL----EDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSG-TLQASLGNLTQLDSLTISD 320 (778)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L----~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~ 320 (778)
++|.+++..+..+..+++| +.+++++ |.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+..
T Consensus 157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~-n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp TTSCCCEECGGGGHHHHTCTTCCCEEECTT-CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred cCCccceecHHHccchhccchhhhhcccCC-CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecc
Confidence 7776666656666665555 5666665 66665555555444 56666666653321 2334444444444443332
Q ss_pred cccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeecccc-CCC-CCCchhcccccccEEeccCCcCCCC
Q 047451 321 SNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSC-NLS-EFPSFLHNQDQLISLDLSSNMIAGK 398 (778)
Q Consensus 321 n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n-~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~ 398 (778)
..+.. ...++. +....+.+. ..-.++.+++.++ .+. .+|..+..+++|++|++++|.+. .
T Consensus 235 ~~~~~-----------~~~l~~--~~~~~~~~l----~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~ 296 (570)
T 2z63_A 235 GEFRN-----------EGNLEK--FDKSALEGL----CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-R 296 (570)
T ss_dssp EECCC-----------CSSCEE--CCTTTTGGG----GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-S
T ss_pred ccccC-----------chhhhh--cchhhhccc----cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-h
Confidence 22110 111111 111111100 0012344444444 222 34455555666666666666655 3
Q ss_pred CchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhc
Q 047451 399 IPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICS 478 (778)
Q Consensus 399 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~ 478 (778)
+|..+. .+ +|++|++++|.+..++. ..+++|+.|++++ |.+.+..+. ..
T Consensus 297 l~~~~~--~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~----------------------n~~~~~~~~--~~ 345 (570)
T 2z63_A 297 VKDFSY--NF-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTS----------------------NKGGNAFSE--VD 345 (570)
T ss_dssp CCBCCS--CC-CCSEEEEESCBCSSCCB----CBCSSCCEEEEES----------------------CBSCCBCCC--CB
T ss_pred hhhhhc--cC-CccEEeeccCcccccCc----ccccccCEEeCcC----------------------Ccccccccc--cc
Confidence 444433 33 55555555555543322 2334445555444 444444333 56
Q ss_pred CCcccccccccccccccC--ChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--C-h-hhhhCCCCC
Q 047451 479 LNGLYALDLSYNNLSGML--PACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--V-P-KSLANCVKL 552 (778)
Q Consensus 479 l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~-~-~~l~~l~~L 552 (778)
+++|++|++++|++++.. +..+..++ +|++|++++|.+.+..+. +..+++|++|++++|.+ . + ..+..+++|
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 778888888888887543 56677777 688888888888866554 88888899999999888 2 3 468889999
Q ss_pred CEEeCCCCcCCCCCcccccCCCCCCEEEccCcccc-ccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccc
Q 047451 553 KFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFH-GVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVN 631 (778)
Q Consensus 553 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~ 631 (778)
++|++++|++.+..|..|.++++|++|++++|+++ +.+|..+ ..+++|++|++++|++++..|.. |..
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~l~~~~~~~-~~~-------- 492 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTA-FNS-------- 492 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSCCCEECTTT-TTT--------
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCccccCChhh-hhc--------
Confidence 99999999999998999999999999999999997 4566555 78999999999999998655532 221
Q ss_pred cCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCC
Q 047451 632 ANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNN 711 (778)
Q Consensus 632 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n 711 (778)
++.|+.|++++|++++.+|..|+.+++|+.+++++|
T Consensus 493 --------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 493 --------------------------------------------LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp --------------------------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 356888999999999998999999999999999999
Q ss_pred ccccccch
Q 047451 712 NLQVFLSP 719 (778)
Q Consensus 712 ~l~~~~p~ 719 (778)
++++..|.
T Consensus 529 ~~~~~~~~ 536 (570)
T 2z63_A 529 PWDCSCPR 536 (570)
T ss_dssp CBCCCTTT
T ss_pred cccCCCcc
Confidence 99998885
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-45 Score=421.66 Aligned_cols=493 Identities=21% Similarity=0.217 Sum_probs=297.3
Q ss_pred CCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcC
Q 047451 86 HLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENL 165 (778)
Q Consensus 86 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l 165 (778)
...+.+.+++.++ ++|..+. ++|++|++++|.+++..|..|.++++|++|++++|+|+.+ .+..+.++
T Consensus 6 ~~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l 73 (549)
T 2z81_A 6 ASGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--------EGDAFYSL 73 (549)
T ss_dssp TTSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE--------CTTTTTTC
T ss_pred CCceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc--------Chhhcccc
Confidence 3444677777774 3666553 6788888888888877777888888888888888866432 33456677
Q ss_pred CCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCC-CChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEE
Q 047451 166 TNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGE-FPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDL 243 (778)
Q Consensus 166 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L 243 (778)
++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+.++++|++|++++|.......+ .+.++++|++|
T Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 7777777777777776666677777777777777776642 345556666666666666521222211 34444444444
Q ss_pred eccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccccc
Q 047451 244 RLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNF 323 (778)
Q Consensus 244 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (778)
++++|.+++ ..|..++.+++|++|++++|.+.......+..+++|++|++++|.+
T Consensus 154 ~L~~n~l~~-------------------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 208 (549)
T 2z81_A 154 EIKALSLRN-------------------------YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208 (549)
T ss_dssp EEEETTCCE-------------------------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC
T ss_pred eccCCcccc-------------------------cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc
Confidence 444444444 4444444444445555444444322222223445555555555544
Q ss_pred CCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhH
Q 047451 324 SGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWL 403 (778)
Q Consensus 324 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 403 (778)
.+...........+++|+.|++++|.+.+..+ ..++..+..+++|+.+++++|.+.+......
T Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----------------~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 271 (549)
T 2z81_A 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF-----------------NELLKLLRYILELSEVEFDDCTLNGLGDFNP 271 (549)
T ss_dssp TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH-----------------HHHHGGGGGCTTCCEEEEESCEEECCSCCCC
T ss_pred ccccccccchhhhhhcccceeccccccchhHH-----------------HHHHHHhhhhccccccccccccccccccccc
Confidence 43211000011122333333333333221100 0111223334445555555554432100000
Q ss_pred HhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCC-----Cc--hhhcccceeEecCCccccCCchhh
Q 047451 404 FSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPL-----PI--PISVLTSSYLVSNNQLTGEIPPSI 476 (778)
Q Consensus 404 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-----~~--~~~~~l~~L~l~~n~l~~~~~~~~ 476 (778)
. ....+..+++++.+++.++.+.... +. .....++.+++++|.++ .+|..+
T Consensus 272 ~---------------------~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 272 S---------------------ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp C---------------------TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred c---------------------chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 0 0001122244444444444332210 00 11345666666666665 455554
Q ss_pred -hcCCcccccccccccccccCCh---hhccccccccEEECCCCcccccCc--ccccCCCCccEEECCCCcc--ChhhhhC
Q 047451 477 -CSLNGLYALDLSYNNLSGMLPA---CLGNFSVQLWVLKLQGNKFHGFIP--ETFNKGTNLRMIDFSNNLL--VPKSLAN 548 (778)
Q Consensus 477 -~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~N~l--~~~~l~~ 548 (778)
..+++|++|++++|++++.+|. .+..++ +|++|++++|++++..+ ..+..+++|++|++++|++ +|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSST-TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccc-cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcc
Confidence 5688888888888888765543 255566 68888888888876532 4577888888888888888 7777788
Q ss_pred CCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhcccccc
Q 047451 549 CVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMK 628 (778)
Q Consensus 549 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~ 628 (778)
+++|++|++++|+++++... + .++|++|++++|++++.+ ..+++|++|++++|+++ .+|.. .
T Consensus 409 ~~~L~~L~Ls~N~l~~l~~~-~--~~~L~~L~Ls~N~l~~~~------~~l~~L~~L~Ls~N~l~-~ip~~--~------ 470 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRVVKTC-I--PQTLEVLDVSNNNLDSFS------LFLPRLQELYISRNKLK-TLPDA--S------ 470 (549)
T ss_dssp CTTCCEEECTTSCCSCCCTT-S--CTTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCS-SCCCG--G------
T ss_pred cccccEEECCCCCcccccch-h--cCCceEEECCCCChhhhc------ccCChhcEEECCCCccC-cCCCc--c------
Confidence 88888888888888765332 2 257888888888887653 35778888888888887 67742 0
Q ss_pred ccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecC
Q 047451 629 DVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNL 708 (778)
Q Consensus 629 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~l 708 (778)
.++.|+.||+++|++++.+|+.|+.+++|+.|++
T Consensus 471 ----------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 471 ----------------------------------------------LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp ----------------------------------------------GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred ----------------------------------------------cCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence 0357889999999999999999999999999999
Q ss_pred CCCccccccch
Q 047451 709 SNNNLQVFLSP 719 (778)
Q Consensus 709 s~n~l~~~~p~ 719 (778)
++|++.+..|.
T Consensus 505 ~~N~~~~~~~~ 515 (549)
T 2z81_A 505 HTNPWDCSCPR 515 (549)
T ss_dssp CSSCBCCCHHH
T ss_pred cCCCccCCCcc
Confidence 99999999883
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=410.10 Aligned_cols=467 Identities=20% Similarity=0.206 Sum_probs=290.2
Q ss_pred EEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECc
Q 047451 63 ELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLS 142 (778)
Q Consensus 63 ~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 142 (778)
.++++++.++. +|. .+. ++|++|+|++|.+... .|..|.++++|++|+|++|++++..|..|+++++|++|+++
T Consensus 4 ~l~ls~n~l~~-ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp EEECTTSCCSS-CCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred eEecCCCCccc-ccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 56666666653 333 333 6666777776666543 34566666666777776666666556666666666666666
Q ss_pred CCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCC-CcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEec
Q 047451 143 FNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGV 221 (778)
Q Consensus 143 ~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 221 (778)
+|+|+.+ |.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++ ..+..+++|
T Consensus 78 ~N~l~~l---------p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L----- 138 (520)
T 2z7x_B 78 HNKLVKI---------SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL----- 138 (520)
T ss_dssp SSCCCEE---------ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS-----
T ss_pred CCceeec---------Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc-----
Confidence 6655322 222 45666666666666655 245556666666666666665543 233344444
Q ss_pred ccCCCCcccCCCCCCCCCCCEEeccCCcC--CccCcccccCCC-CCCeEeccCCCCCcccC-CccccCCCCCCeeccccc
Q 047451 222 MKNPNLTGYLPQFQKSSPLEDLRLSYTRF--SGKIPSSLGNLT-KLEDLYLSGGNGFSNEL-PPSIGNLASLKTLEISSF 297 (778)
Q Consensus 222 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~L~~~n~l~~~~-~~~l~~l~~L~~L~L~~n 297 (778)
+|++|++++|.+ .+..|..+..+. ....+++++ |.+.+.. +..+..+++|+.|++++|
T Consensus 139 -----------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 139 -----------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT-NKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp -----------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS-SSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred -----------------eeeEEEeecccccccccccccccccccceEEEEecc-Ccchhhhhhhhhhcccceeecccccc
Confidence 114555555555 444444444433 122344554 3333322 334556677777777776
Q ss_pred c-------cCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeecccc
Q 047451 298 N-------FSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSC 370 (778)
Q Consensus 298 ~-------l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n 370 (778)
. +.+.++ .+..+++|+.|++++|.+.+.....+......++|++|++++|.+.+
T Consensus 201 ~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------ 261 (520)
T 2z7x_B 201 LEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG------------------ 261 (520)
T ss_dssp CSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES------------------
T ss_pred ccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC------------------
Confidence 5 444444 56666777777777666554322111111112344444444443332
Q ss_pred CCCCCCchh-----cccccccEEeccCCcCCCCCc-hhHHhc-CCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCC
Q 047451 371 NLSEFPSFL-----HNQDQLISLDLSSNMIAGKIP-EWLFSA-GTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRF 443 (778)
Q Consensus 371 ~l~~lp~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 443 (778)
.+|..+ ..++.|+.+++++|.+ .+| ..+... ...+|+.|++++|.+..... ...+++|++|++++
T Consensus 262 ---~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 262 ---QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSN 333 (520)
T ss_dssp ---CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCS
T ss_pred ---ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeEC
Confidence 344444 5667777777777777 455 333200 12457777777776654331 13445666666666
Q ss_pred CcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccc--cCChhhccccccccEEECCCCcccccC
Q 047451 444 NKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSG--MLPACLGNFSVQLWVLKLQGNKFHGFI 521 (778)
Q Consensus 444 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 521 (778)
|+++ +..|..+..+++|++|++++|++++ .+|..+..++ +|++|++++|.+++.+
T Consensus 334 n~l~----------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 334 NLLT----------------------DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDE 390 (520)
T ss_dssp SCCC----------------------TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCG
T ss_pred CccC----------------------hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCccc
Confidence 5554 4566677788888899999988885 4556677777 7999999999998744
Q ss_pred c-ccccCCCCccEEECCCCccChhhhhCC-CCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCcccccc
Q 047451 522 P-ETFNKGTNLRMIDFSNNLLVPKSLANC-VKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEF 599 (778)
Q Consensus 522 ~-~~~~~l~~L~~L~L~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 599 (778)
| ..+..+++|++|++++|++.......+ ++|++|++++|+++. +|..+..+++|++|++++|+++++.+..+ ..+
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l 467 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIF--DRL 467 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTT--TTC
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHh--ccC
Confidence 4 458888999999999998833333333 799999999999995 56666799999999999999997654434 789
Q ss_pred CcCcEEEcCCCcCCCCCChHHH-hccc
Q 047451 600 VKLRIIDLSHNRFAGNLPSKHF-ECWN 625 (778)
Q Consensus 600 ~~L~~L~ls~N~l~~~ip~~~~-~~~~ 625 (778)
++|++|++++|+++|.++..+| ..|-
T Consensus 468 ~~L~~L~l~~N~~~c~c~~~~~~~~~~ 494 (520)
T 2z7x_B 468 TSLQKIWLHTNPWDCSCPRIDYLSRWL 494 (520)
T ss_dssp TTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred CcccEEECcCCCCcccCCchHHHHHHH
Confidence 9999999999999999998888 6664
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-44 Score=417.48 Aligned_cols=518 Identities=22% Similarity=0.232 Sum_probs=280.3
Q ss_pred cEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEE
Q 047451 60 HVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVL 139 (778)
Q Consensus 60 ~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 139 (778)
.+++|||++|.+++..+. +|.++++|++|+|++|++... .+.+|.++++|++|+|++|++++..+.+|.++++|++|
T Consensus 53 ~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 444555555544433332 444555555555555544322 22334445555555555555543333444555555555
Q ss_pred ECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCC-cchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCC-
Q 047451 140 DLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISST-VPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQ- 217 (778)
Q Consensus 140 ~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~- 217 (778)
++++|+++.+ .+..++++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..+..+.+++
T Consensus 130 ~Ls~N~l~~l--------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 130 VAVETNLASL--------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp ECTTSCCCCS--------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred ECCCCcCCCC--------ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 5555543221 112244445555555555544432 344444455555555555554444444433332222
Q ss_pred ---EEecccCCCCcccCCCCCCCCCCCEEeccCCcCCc-cCcccccCCCCCCeEeccCC-----CCCcccCCccccCCCC
Q 047451 218 ---FLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSG-KIPSSLGNLTKLEDLYLSGG-----NGFSNELPPSIGNLAS 288 (778)
Q Consensus 218 ---~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~-----n~l~~~~~~~l~~l~~ 288 (778)
.++++.| .+....+.......++.+++.+|.... ..+..+..+..++...+... ..+.......+.....
T Consensus 202 ~~~~~~ls~n-~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 202 LNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp CCCEEECTTC-CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhhcccC-cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 3444444 222222222222333444444443321 11222333333333332210 0111111122222233
Q ss_pred CCeecccccccCC---chhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCccccee
Q 047451 289 LKTLEISSFNFSG---TLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEII 365 (778)
Q Consensus 289 L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L 365 (778)
+...++..+.... .....+..+.+++.+.+.++.+.... .+.....++.|++.+|.+... +...+..++.+
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~-~~~~l~~L~~l 354 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-----DFSYNFGWQHLELVNCKFGQF-PTLKLKSLKRL 354 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-----GGGSCCCCSEEEEESCEESSC-CCCBCTTCCEE
T ss_pred hhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-----ccccchhhhhhhcccccccCc-Ccccchhhhhc
Confidence 3333332222111 11122333344444444444433221 223334455555555444321 12233444445
Q ss_pred eccccCCCCCCchhcccccccEEeccCCcCCCC--CchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCC
Q 047451 366 GLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGK--IPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRF 443 (778)
Q Consensus 366 ~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 443 (778)
++..|.+...+. ...+++|+.+++++|.+... .+.... .+.+|+.++++.+........ +..++
T Consensus 355 ~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~--~~~l~--------- 420 (635)
T 4g8a_A 355 TFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSN--FLGLE--------- 420 (635)
T ss_dssp EEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSC--CTTCT---------
T ss_pred ccccccCCCCcc-cccccccccchhhccccccccccccchh--hhhhhhhhhcccccccccccc--ccccc---------
Confidence 554444443221 22344555555555544321 222222 444445555444444333321 23334
Q ss_pred CcCcCCCCchhhcccceeEecCCccccCC-chhhhcCCcccccccccccccccCChhhccccccccEEECCCCcc-cccC
Q 047451 444 NKLQGPLPIPISVLTSSYLVSNNQLTGEI-PPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKF-HGFI 521 (778)
Q Consensus 444 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~ 521 (778)
.++.++++.++..... +..+..+++++.+++++|.+.+..+..+...+ +|++|++++|.+ .+..
T Consensus 421 -------------~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 421 -------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFL 486 (635)
T ss_dssp -------------TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEE
T ss_pred -------------cccchhhhhccccccccccccccccccccccccccccccccccccccch-hhhhhhhhhcccccccC
Confidence 4445555444443332 34677889999999999999988787777777 799999999985 4567
Q ss_pred cccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccc
Q 047451 522 PETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFE 598 (778)
Q Consensus 522 ~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 598 (778)
|..|..+++|++|+|++|++ .|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|++.++..+ ..
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~ 564 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QH 564 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--Hh
Confidence 88999999999999999999 68889999999999999999999999999999999999999999999988776 56
Q ss_pred c-CcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 599 F-VKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 599 l-~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
+ ++|++|++++|+++|.|...||..|-
T Consensus 565 l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp CCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred hhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 6 68999999999999999999998884
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.1e-43 Score=394.76 Aligned_cols=441 Identities=19% Similarity=0.217 Sum_probs=297.2
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCE
Q 047451 59 GHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEV 138 (778)
Q Consensus 59 ~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 138 (778)
.++++|++++|.+.+..+. .|.++++|++|+|++|++... .|..|+++++|++|+|++|.++ .+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence 6899999999999876655 899999999999999999764 5789999999999999999999 67765 8999999
Q ss_pred EECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCC--CEEEcccCcC--CCCCChhhcCCC
Q 047451 139 LDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL--HFLSLSGCRL--QGEFPQEIFQLP 214 (778)
Q Consensus 139 L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l~ 214 (778)
|++++|.|+.+ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 95 L~L~~N~l~~~-------~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 95 LDLSFNAFDAL-------PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp EECCSSCCSSC-------CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred EeccCCccccc-------cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccc
Confidence 99999987432 467889999999999999999986 467778888 9999999999 777777776665
Q ss_pred C-CCEEecccCCCCcccCC--CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCe
Q 047451 215 N-LQFLGVMKNPNLTGYLP--QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKT 291 (778)
Q Consensus 215 ~-L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~ 291 (778)
. ...+++++| ...+..+ .+..+++|+.+++++|..... +..+.+.++ .++.+++|+.
T Consensus 165 ~~~l~l~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------------------~~~~~~~~~-~l~~l~~L~~ 224 (520)
T 2z7x_B 165 TESLHIVFPTN-KEFHFILDVSVKTVANLELSNIKCVLEDNK------------------CSYFLSILA-KLQTNPKLSN 224 (520)
T ss_dssp EEEEEEECCSS-SCCCCCCCCCCTTCSEEEECCEEECCSTTT------------------THHHHHHHH-GGGGCTTCCE
T ss_pred cceEEEEeccC-cchhhhhhhhhhcccceeeccccccccccc------------------cceeecchh-hhccccchhh
Confidence 2 224555666 2332222 455566666666666541000 000222222 3444555555
Q ss_pred ecccccccCCchhhhcc---CCCCCCcccccccccCCCCCcchhhh-----cCCCCCcEEecCCCCCCcCCCCCCCcccc
Q 047451 292 LEISSFNFSGTLQASLG---NLTQLDSLTISDSNFSGPMSSSLSWL-----TNLNQLTSLNFPNCNLNEPLLVPNTQKFE 363 (778)
Q Consensus 292 L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~L~ 363 (778)
|++++|.+.+..+..+. ..++|++|++++|.+.+..|. .+ ..+++|+.+++++|.+
T Consensus 225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~---~~~~~~~~~l~~L~~l~l~~n~~------------- 288 (520)
T 2z7x_B 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF---RDFDYSGTSLKALSIHQVVSDVF------------- 288 (520)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC---CCCCCCSCCCCEEEEEEEEECCC-------------
T ss_pred ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc---chhhcccccCceeEeccccccce-------------
Confidence 55555544432211111 134666666666666655554 22 3334444444443333
Q ss_pred eeeccccCCCCCC-chhccc---ccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEE
Q 047451 364 IIGLRSCNLSEFP-SFLHNQ---DQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGAL 439 (778)
Q Consensus 364 ~L~L~~n~l~~lp-~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 439 (778)
.+| ..+..+ .+|+.|++++|.+..... . ..+++|++|++++|.+.+..+. .+..+++|+.|
T Consensus 289 ----------~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 353 (520)
T 2z7x_B 289 ----------GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--P--SKISPFLHLDFSNNLLTDTVFE-NCGHLTELETL 353 (520)
T ss_dssp ----------CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--C--SSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEE
T ss_pred ----------ecchhhhhcccccCceeEEEcCCCccccccc--h--hhCCcccEEEeECCccChhhhh-hhccCCCCCEE
Confidence 223 122222 345555555555432110 0 1445555555555555543322 23445667777
Q ss_pred EcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChh-hccccccccEEECCCCccc
Q 047451 440 DLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPAC-LGNFSVQLWVLKLQGNKFH 518 (778)
Q Consensus 440 ~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~L~~L~Ls~n~l~ 518 (778)
++++|++++. +.+|..+..+++|++|++++|++++.+|.. +..++ +|++|++++|+++
T Consensus 354 ~L~~N~l~~l--------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~-~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 354 ILQMNQLKEL--------------------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK-SLLSLNMSSNILT 412 (520)
T ss_dssp ECCSSCCCBH--------------------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT-TCCEEECCSSCCC
T ss_pred EccCCccCcc--------------------ccchHHHhhCCCCCEEECCCCcCCcccccchhccCc-cCCEEECcCCCCC
Confidence 7766665521 024456778888888888888888656654 55555 7899999999888
Q ss_pred ccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 519 GFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 519 ~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
+..|..+. ++|++|++++|++ +|..+..+++|++|++++|+++++.+..|..+++|++|++++|++++.
T Consensus 413 ~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 413 DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence 77666654 6889999999998 788788999999999999999976655689999999999999998764
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-44 Score=410.42 Aligned_cols=327 Identities=20% Similarity=0.233 Sum_probs=219.8
Q ss_pred Cccccc--CCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccc-cCC-chhhhccCC------CCCCccccccccc
Q 047451 254 IPSSLG--NLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFN-FSG-TLQASLGNL------TQLDSLTISDSNF 323 (778)
Q Consensus 254 ~~~~~~--~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l 323 (778)
+|..+. ++++|++|++++ |.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYN-CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEEC-CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecC-CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 566666 666666666666 66666666666667777777777776 665 566666554 6777777777777
Q ss_pred CCCCCcchhhhcCCCCCcEEecCCCCCCcCCC-CCCCcccceeeccccCCCCCCchhccccc-ccEEeccCCcCCCCCch
Q 047451 324 SGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLL-VPNTQKFEIIGLRSCNLSEFPSFLHNQDQ-LISLDLSSNMIAGKIPE 401 (778)
Q Consensus 324 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~L~~n~l~~lp~~l~~l~~-L~~L~Ls~n~l~~~~~~ 401 (778)
+ .+|. ...+..+++|++|++++|.+.+.++ +..+++|++|++++|.+..+|..+..+++ |++|++++|.++ .+|.
T Consensus 318 ~-~ip~-~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 318 K-TFPV-ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp S-SCCC-HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred C-ccCc-hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 6 3332 0135566777777777777664333 23456777777777777777777778887 888888888887 6666
Q ss_pred hHHhcCCCCccEEeccCCccccccCCCCCC-------CCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCch
Q 047451 402 WLFSAGTNSLQYLNLSYNLLMHFEHNLPVL-------PWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPP 474 (778)
Q Consensus 402 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~ 474 (778)
.+....+++|++|++++|.+.+..+.. +. .+++| ++|++++|++++..+.
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L----------------------~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINV----------------------SSINLSNNQISKFPKE 451 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCE----------------------EEEECCSSCCCSCCTH
T ss_pred hhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCC----------------------CEEECcCCccCcCCHH
Confidence 544222336666666666665543321 11 22344 4455555555533333
Q ss_pred hhhcCCcccccccccccccccCChhhccccc-------cccEEECCCCcccccCccccc--CCCCccEEECCCCcc--Ch
Q 047451 475 SICSLNGLYALDLSYNNLSGMLPACLGNFSV-------QLWVLKLQGNKFHGFIPETFN--KGTNLRMIDFSNNLL--VP 543 (778)
Q Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-------~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l--~~ 543 (778)
.+..+++|++|++++|+++ .+|........ +|++|++++|.++ .+|..+. .+++|++|+|++|++ +|
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip 529 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFP 529 (636)
T ss_dssp HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCC
T ss_pred HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcC
Confidence 4455777777777777777 55544333221 5777888888777 4555565 777788888888877 67
Q ss_pred hhhhCCCCCCEEeC------CCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCC
Q 047451 544 KSLANCVKLKFLDL------GDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAG 614 (778)
Q Consensus 544 ~~l~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~ 614 (778)
..+..+++|++|+| ++|++.+.+|.++..+++|++|+|++|++. .+|..+ .++|+.||+++|++.+
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~----~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI----TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCC----CTTCCEEECCSCTTCE
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhH----hCcCCEEECcCCCCcc
Confidence 77777888888877 678888899999999999999999999994 555554 2799999999998873
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-41 Score=393.35 Aligned_cols=484 Identities=20% Similarity=0.186 Sum_probs=381.9
Q ss_pred CcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCE
Q 047451 59 GHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEV 138 (778)
Q Consensus 59 ~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 138 (778)
.++++|+|++|.+.+..+. +|.++++|++|+|++|++... .+..|.++++|++|+|++|++++..+..|+++++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred CCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 5799999999999876665 799999999999999998653 3467899999999999999999777778999999999
Q ss_pred EECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCC----CEEEcccCcCCCCCChhhcCCC
Q 047451 139 LDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL----HFLSLSGCRLQGEFPQEIFQLP 214 (778)
Q Consensus 139 L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~Ls~n~l~~~~~~~l~~l~ 214 (778)
|++++|.++.+ .+|..++.+++|++|++++|++++..+..+..+.++ ..++++.|.+... +.......
T Consensus 153 L~Ls~N~l~~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-~~~~~~~~ 224 (635)
T 4g8a_A 153 LNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEI 224 (635)
T ss_dssp EECCSSCCCCC-------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTTTTTTC
T ss_pred eccccCccccC-------CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc-Ccccccch
Confidence 99999987543 467788999999999999999999888888766544 4789999999854 44445556
Q ss_pred CCCEEecccCCCCcccC-C-CCCCCCCCCEEeccCCc------CCccCcccccCCCCCCeEeccC--CCCCcccCCcccc
Q 047451 215 NLQFLGVMKNPNLTGYL-P-QFQKSSPLEDLRLSYTR------FSGKIPSSLGNLTKLEDLYLSG--GNGFSNELPPSIG 284 (778)
Q Consensus 215 ~L~~L~L~~n~~~~~~~-~-~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~--~n~l~~~~~~~l~ 284 (778)
.++.+++.+| ...... + .+..+..++...+..+. +.......+..+..+....+.. ........+..+.
T Consensus 225 ~~~~l~l~~n-~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 303 (635)
T 4g8a_A 225 RLHKLTLRNN-FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303 (635)
T ss_dssp EEEEEEEESC-CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred hhhhhhhhcc-cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence 6788888887 333222 2 45666777766654432 2223334444455555555443 1112223345566
Q ss_pred CCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccce
Q 047451 285 NLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEI 364 (778)
Q Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~ 364 (778)
...+++.+.+.++.+.... .+.....++.|++.+|.+....+. .++.|+.+++..|..........+++|+.
T Consensus 304 ~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~------~l~~L~~l~l~~n~~~~~~~~~~l~~L~~ 375 (635)
T 4g8a_A 304 CLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375 (635)
T ss_dssp GGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC------BCTTCCEEEEESCCSCCBCCCCBCTTCCE
T ss_pred hhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc------cchhhhhcccccccCCCCccccccccccc
Confidence 7788999999998876543 356678899999999988765443 46789999999998887777778999999
Q ss_pred eeccccCCC---CCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEc
Q 047451 365 IGLRSCNLS---EFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDL 441 (778)
Q Consensus 365 L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 441 (778)
+++++|.+. ..+.....+.+|+.+++..+.+.. .+..+. .+++|+.++++.+..........+..+++++.+++
T Consensus 376 L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~--~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp EECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT--TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred chhhccccccccccccchhhhhhhhhhhcccccccc-cccccc--ccccccchhhhhccccccccccccccccccccccc
Confidence 999999987 345667788899999999998763 344444 78999999999999888777666777788888888
Q ss_pred CCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCccccccccccccc-ccCChhhccccccccEEECCCCccccc
Q 047451 442 RFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLS-GMLPACLGNFSVQLWVLKLQGNKFHGF 520 (778)
Q Consensus 442 ~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 520 (778)
+.|.+.+ ..+..+..+++|++|++++|++. +..|..+..++ +|++|+|++|++++.
T Consensus 453 s~n~l~~----------------------~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~-~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 453 SHTHTRV----------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQL 509 (635)
T ss_dssp TTSCCEE----------------------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEE
T ss_pred ccccccc----------------------ccccccccchhhhhhhhhhcccccccCchhhhhcc-ccCEEECCCCccCCc
Confidence 8777663 45566778889999999998754 35677777777 799999999999999
Q ss_pred CcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCC-CCCCEEEccCccccc
Q 047451 521 IPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTL-PELEVLILKSNNFHG 588 (778)
Q Consensus 521 ~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~ 588 (778)
.|..|.++++|++|+|++|++ .+..|.++++|++|||++|++++..|..|..+ ++|++|+|++|+++.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999999999998 56789999999999999999999999999988 689999999999874
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-41 Score=385.88 Aligned_cols=467 Identities=21% Similarity=0.216 Sum_probs=297.9
Q ss_pred EEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEEC
Q 047451 62 VELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDL 141 (778)
Q Consensus 62 ~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 141 (778)
++++++++.+++ +|. .+. ++|++|+|++|.+... .+..|.++++|++|+|++|.+++..|.+|.++++|++|++
T Consensus 34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 778888888875 443 333 7888888888888654 4567888888888888888888777888888888888888
Q ss_pred cCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCC-cchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEe
Q 047451 142 SFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISST-VPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLG 220 (778)
Q Consensus 142 s~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 220 (778)
++|.|+.+ |.. .+++|++|++++|++++. .|..|+++++|++|++++|.+++. .+..+++|
T Consensus 108 s~N~l~~l---------p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L---- 169 (562)
T 3a79_B 108 SHNRLQNI---------SCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL---- 169 (562)
T ss_dssp TTSCCCEE---------CSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS----
T ss_pred CCCcCCcc---------Ccc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc----
Confidence 88876433 222 567777777777777663 356677777777777777766532 22233333
Q ss_pred cccCCCCcccCCCCCCCCCCCEEeccCCcC--CccCcccccCCC--CCCeEeccCCCCCcccCC-ccccCCCCCCeeccc
Q 047451 221 VMKNPNLTGYLPQFQKSSPLEDLRLSYTRF--SGKIPSSLGNLT--KLEDLYLSGGNGFSNELP-PSIGNLASLKTLEIS 295 (778)
Q Consensus 221 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~--~L~~L~L~~~n~l~~~~~-~~l~~l~~L~~L~L~ 295 (778)
+|++|++++|.+ ++..|..+..+. .+ .+++++ |.+.+..+ ..+..+++|+.++++
T Consensus 170 ------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~-n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 170 ------------------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHP-NSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp ------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECS-SSCCCCCCEEEESSEEEEEEEEEE
T ss_pred ------------------eeeEEEeecccccccccCcccccccCcceE-EEEecC-ccchhhhhhhcccccceEEEeccc
Confidence 124444444444 444454444432 11 334444 44433332 233455666666666
Q ss_pred ccccC----CchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccC
Q 047451 296 SFNFS----GTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCN 371 (778)
Q Consensus 296 ~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~ 371 (778)
+|... ......+..+++|+.+++.++.+.+.....+......+ +|++|++++|.
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~----------------------~L~~L~l~~n~ 287 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR----------------------PVEYLNIYNLT 287 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS----------------------SEEEEEEEEEE
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc----------------------cccEEEEeccE
Confidence 65311 01122345555555555555544322111000011112 34444444444
Q ss_pred CC-CCCchh-----cccccccEEeccCCcCCCCCchh-HHh-cCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCC
Q 047451 372 LS-EFPSFL-----HNQDQLISLDLSSNMIAGKIPEW-LFS-AGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRF 443 (778)
Q Consensus 372 l~-~lp~~l-----~~l~~L~~L~Ls~n~l~~~~~~~-~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 443 (778)
+. .+|..+ ..++.|+.+++..+.+ .+|.. +.. ....+|++|++++|.+..... ...+++|++|++++
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQ 362 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCS
T ss_pred eeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC---ccCCCCceEEECCC
Confidence 43 344333 4455555555555555 34422 210 012456666666665543321 12335555555555
Q ss_pred CcCcCCCCchhhcccceeEecCCccccCCchhhhcCCccccccccccccccc--CChhhccccccccEEECCCCcccccC
Q 047451 444 NKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGM--LPACLGNFSVQLWVLKLQGNKFHGFI 521 (778)
Q Consensus 444 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~ 521 (778)
|. +++..|..+.++++|++|++++|++++. +|..+..++ +|++|++++|.+++.+
T Consensus 363 n~----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 363 NV----------------------FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHA 419 (562)
T ss_dssp SC----------------------CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCC
T ss_pred Cc----------------------cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCcc
Confidence 54 4456677788899999999999999853 345677777 7999999999999844
Q ss_pred c-ccccCCCCccEEECCCCccChhhhhCC-CCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCcccccc
Q 047451 522 P-ETFNKGTNLRMIDFSNNLLVPKSLANC-VKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEF 599 (778)
Q Consensus 522 ~-~~~~~l~~L~~L~L~~N~l~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 599 (778)
| ..+..+++|++|++++|++....+..+ ++|++|++++|+++.+ |..+.++++|++|++++|+++++.+..+ ..+
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l 496 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVF--DRL 496 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTTST--TTC
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHHHH--hcC
Confidence 4 568889999999999999954444555 6999999999999965 5555599999999999999997654434 789
Q ss_pred CcCcEEEcCCCcCCCCCChHHHh-ccc
Q 047451 600 VKLRIIDLSHNRFAGNLPSKHFE-CWN 625 (778)
Q Consensus 600 ~~L~~L~ls~N~l~~~ip~~~~~-~~~ 625 (778)
++|+.|++++|+++|.+|..+|. .|.
T Consensus 497 ~~L~~L~l~~N~~~c~c~~~~~~~~~~ 523 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPGIRYLSEWI 523 (562)
T ss_dssp TTCCCEECCSCCBCCCHHHHHHHHHHH
T ss_pred CCCCEEEecCCCcCCCcchHHHHHHHH
Confidence 99999999999999999988774 364
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-41 Score=396.34 Aligned_cols=363 Identities=21% Similarity=0.268 Sum_probs=287.0
Q ss_pred CCCEEeccC--CcCCccCcccccCCCCCCeEeccCCCCCcc-----------------cCCcccc--CCCCCCeeccccc
Q 047451 239 PLEDLRLSY--TRFSGKIPSSLGNLTKLEDLYLSGGNGFSN-----------------ELPPSIG--NLASLKTLEISSF 297 (778)
Q Consensus 239 ~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~-----------------~~~~~l~--~l~~L~~L~L~~n 297 (778)
.++.+.+.. |.+++ +|..|.++++|+.|+|++ |.+++ .+|..++ .+++|+.|+|++|
T Consensus 424 ~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred chhhceeccccCcccc-hhHHHhcCCCCCEEECcC-CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 344444443 67776 778888888888888887 77877 3777776 8888888888888
Q ss_pred ccCCchhhhccCCCCCCcccccccc-cCC-CCCcchhhh----cCCCCCcEEecCCCCCCcCCC----CCCCcccceeec
Q 047451 298 NFSGTLQASLGNLTQLDSLTISDSN-FSG-PMSSSLSWL----TNLNQLTSLNFPNCNLNEPLL----VPNTQKFEIIGL 367 (778)
Q Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~L 367 (778)
.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ..+++|+.|++++|.+. .++ +..+++|+.|++
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 8888888888888888888888887 776 666644332 35568888888888887 343 347788888888
Q ss_pred cccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCC-ccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcC
Q 047451 368 RSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNS-LQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKL 446 (778)
Q Consensus 368 ~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 446 (778)
++|.+..+| .+..+++|+.|++++|++. .+|..+. .+++ |+.|++++|.+..++........++|+.|++++|++
T Consensus 581 s~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~--~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 581 VHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC--AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp TTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSC--EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCCcccch-hhcCCCcceEEECcCCccc-cchHHHh--hccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence 888888888 7888888999999999888 7777665 6777 999999999888666443333334589999999998
Q ss_pred cCCCCchh-------hcccceeEecCCccccCCchh-hhcCCcccccccccccccccCChhhccccc-------cccEEE
Q 047451 447 QGPLPIPI-------SVLTSSYLVSNNQLTGEIPPS-ICSLNGLYALDLSYNNLSGMLPACLGNFSV-------QLWVLK 511 (778)
Q Consensus 447 ~~~~~~~~-------~~~l~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-------~L~~L~ 511 (778)
.+.+|... ..+|+.|++++|.++ .+|.. +..+++|+.|++++|+++ .+|..+..... +|++|+
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEE
Confidence 87655321 347889999999998 45554 458899999999999998 67766554321 699999
Q ss_pred CCCCcccccCccccc--CCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCC------CcCCCCCcccccCCCCCCEEEc
Q 047451 512 LQGNKFHGFIPETFN--KGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGD------NQITDFFPSWLGTLPELEVLIL 581 (778)
Q Consensus 512 Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~L 581 (778)
|++|+++ .+|..+. .+++|+.|+|++|++ +|..+..+++|+.|+|++ |++.+.+|..|.++++|+.|+|
T Consensus 735 Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 735 LRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 9999999 5677776 899999999999999 888899999999999976 8888999999999999999999
Q ss_pred cCccccccCCCCccccccCcCcEEEcCCCcCCCCCC
Q 047451 582 KSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP 617 (778)
Q Consensus 582 s~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip 617 (778)
++|++ +.+|..+ .++|+.|||++|++. .++
T Consensus 814 s~N~L-~~Ip~~l----~~~L~~LdLs~N~l~-~i~ 843 (876)
T 4ecn_A 814 GSNDI-RKVDEKL----TPQLYILDIADNPNI-SID 843 (876)
T ss_dssp CSSCC-CBCCSCC----CSSSCEEECCSCTTC-EEE
T ss_pred CCCCC-CccCHhh----cCCCCEEECCCCCCC-ccC
Confidence 99999 5566654 269999999999998 443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-39 Score=371.25 Aligned_cols=463 Identities=20% Similarity=0.182 Sum_probs=275.8
Q ss_pred CCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCC
Q 047451 111 RLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS 190 (778)
Q Consensus 111 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 190 (778)
..+++++++|.++ .+|..+. ++|++|++++|.|+.+ .+..+.++++|++|++++|++++..|.+|.+++
T Consensus 32 ~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 32 LESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISEL--------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp -CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCC--------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred CCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCcccc--------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 3467777777776 3555443 5677777777654322 223445555555555555555555555555555
Q ss_pred CCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCc-cCcccccCCCCCCeEec
Q 047451 191 SLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSG-KIPSSLGNLTKLEDLYL 269 (778)
Q Consensus 191 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 269 (778)
+|++|++++|+++ .+|.. .+++|++|++++|.+++ ..|..|.++++|++|++
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~--------------------------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC--------------------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp TCCEEECTTSCCC-EECSC--------------------------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred CCCEEECCCCcCC-ccCcc--------------------------ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 5555555555554 23322 34445555555555544 22355555566666666
Q ss_pred cCCCCCcccCCccccCCCCC--Ceeccccccc--CCchhhhccCCC-CCCcccccccccCCCCCcchhhhcCCCCCcEEe
Q 047451 270 SGGNGFSNELPPSIGNLASL--KTLEISSFNF--SGTLQASLGNLT-QLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLN 344 (778)
Q Consensus 270 ~~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~ 344 (778)
++ |.+++. .+..+++| +.|++++|.+ ++..|..+..+. ..-.+++++|.+.+..+.. .+..+++|+.++
T Consensus 154 ~~-n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~--~~~~l~~L~~L~ 227 (562)
T 3a79_B 154 SA-AKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM--SVNALGHLQLSN 227 (562)
T ss_dssp EC-SBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE--EESSEEEEEEEE
T ss_pred CC-CccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh--cccccceEEEec
Confidence 55 544432 22333333 6666666655 444444444432 1112344444444333221 223334444444
Q ss_pred cCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhH-HhcCCCCccEEeccCCcccc
Q 047451 345 FPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWL-FSAGTNSLQYLNLSYNLLMH 423 (778)
Q Consensus 345 l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~ 423 (778)
+++|..... .+......+..++.|+.++++++.+.+.....+ ......+|++|++++|.+.+
T Consensus 228 l~~n~~~~~-----------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 290 (562)
T 3a79_B 228 IKLNDENCQ-----------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290 (562)
T ss_dssp EECCSTTHH-----------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS
T ss_pred ccccccccc-----------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec
Confidence 444321000 011112345556667777776666543211111 00123466666666666653
Q ss_pred ccCCCCC----CCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCc-hhhhc---CCccccccccccccccc
Q 047451 424 FEHNLPV----LPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIP-PSICS---LNGLYALDLSYNNLSGM 495 (778)
Q Consensus 424 ~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~Ls~N~l~~~ 495 (778)
..+...+ ..++.|+.+++..+. + .+| ..+.. ..+|++|++++|.+...
T Consensus 291 ~ip~~~~~~~~~~L~~L~~~~~~~~~----------------------~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 291 RIDREEFTYSETALKSLMIEHVKNQV----------------------F--LFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp CCCCCCCCCCSCSCCEEEEEEEEECC----------------------C--SSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred cccchhhhcccccchheehhhcccce----------------------e--ecChhhhhhhhccCcceEEEccCCCcccc
Confidence 3222111 222333333333333 2 222 22222 25688888988887632
Q ss_pred CChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--C---hhhhhCCCCCCEEeCCCCcCCC-CCccc
Q 047451 496 LPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--V---PKSLANCVKLKFLDLGDNQITD-FFPSW 569 (778)
Q Consensus 496 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~---~~~l~~l~~L~~L~Ls~N~l~~-~~~~~ 569 (778)
. ....++ +|++|++++|.+++..|..+.++++|++|++++|++ + |..+..+++|++|++++|++++ ..+..
T Consensus 347 ~--~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 347 V--CPPSPS-SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp C--CCSSCC-CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred c--CccCCC-CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 2 113455 799999999999988888999999999999999998 2 4568899999999999999998 55556
Q ss_pred ccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCC
Q 047451 570 LGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYP 649 (778)
Q Consensus 570 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 649 (778)
+..+++|++|++++|++++..+..+ .++|++|++++|+++ .+|..++ .
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l----~~~L~~L~L~~N~l~-~ip~~~~-~-------------------------- 471 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCL----PPKVKVLDLHNNRIM-SIPKDVT-H-------------------------- 471 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSC----CTTCSEEECCSSCCC-CCCTTTT-S--------------------------
T ss_pred hcCcccCCEEECCCCCCCcchhhhh----cCcCCEEECCCCcCc-ccChhhc-C--------------------------
Confidence 8999999999999999987655443 169999999999998 7886522 1
Q ss_pred CccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCccccccch
Q 047451 650 AYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQVFLSP 719 (778)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~p~ 719 (778)
++.|+.|++++|++++..+..|+.+++|+.+++++|++.+..|.
T Consensus 472 --------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 472 --------------------------LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp --------------------------SCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred --------------------------CCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 35788999999999954444499999999999999999987774
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-37 Score=341.90 Aligned_cols=397 Identities=22% Similarity=0.233 Sum_probs=285.2
Q ss_pred CEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccC--CCCCCCCCCCEEecc
Q 047451 169 KALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYL--PQFQKSSPLEDLRLS 246 (778)
Q Consensus 169 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~ 246 (778)
+.++.+++.++. +|. + .++|++|++++|.+++..|..+.++++|++|++++| ...+.+ ..|.++++|++|+++
T Consensus 13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeCC
Confidence 456777777664 343 2 278889999998888777888888888888888888 443332 267788888888888
Q ss_pred CCcCCccCcccccCCCCCCeEeccCCCCCcccCCcc--ccCCCCCCeecccccccCCchhhh-ccCCCCCCccccccccc
Q 047451 247 YTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPS--IGNLASLKTLEISSFNFSGTLQAS-LGNLTQLDSLTISDSNF 323 (778)
Q Consensus 247 ~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l 323 (778)
+|.+++..|..|..+++|++|++++ |.+++..+.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQ-CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTT-SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCC-CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 8888777777788888888888887 6776644333 777777888888888777666654 67777777777777777
Q ss_pred CCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhH
Q 047451 324 SGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWL 403 (778)
Q Consensus 324 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 403 (778)
.+..+..+..+. ..+|+.|++++|.+.+..+.... . .....+..+++|++|++++|++++..|..+
T Consensus 167 ~~~~~~~l~~l~-~~~L~~L~l~~n~l~~~~~~~~~---------~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 167 KSICEEDLLNFQ-GKHFTLLRLSSITLQDMNEYWLG---------W----EKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp SCCCTTTSGGGT-TCEEEEEECTTCBCTTCSTTCTT---------H----HHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred cccChhhhhccc-cccccccccccCcccccchhhcc---------c----cccccccccceeeeEecCCCcccccchhhh
Confidence 766665322211 14555566555555432211000 0 000113355788899999998887776665
Q ss_pred Hhc-CCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhc--CC
Q 047451 404 FSA-GTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICS--LN 480 (778)
Q Consensus 404 ~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~--l~ 480 (778)
... ...+|+.|++++|....... ..+.+.+..+..+.. .+
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSF-------------------------------------GHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCT-------------------------------------TCCSSCCCCTTTTGGGTTS
T ss_pred hccccccceeeEeecccccccccc-------------------------------------chhhhccCccccccccccc
Confidence 411 22556666666654433211 011111112222222 36
Q ss_pred cccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeC
Q 047451 481 GLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDL 557 (778)
Q Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~L 557 (778)
+|++|++++|++.+..|..+..++ +|++|++++|.+++..|..|.++++|++|++++|.+ .|..+..+++|++|+|
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 788999999999888888888887 799999999999988888999999999999999998 5788999999999999
Q ss_pred CCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCC-hHHHhccc
Q 047451 558 GDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP-SKHFECWN 625 (778)
Q Consensus 558 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip-~~~~~~~~ 625 (778)
++|++++..|.+|.++++|++|++++|+++++.+..+ ..+++|++|++++|+++|.+| ..++..|-
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 421 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCcchHHHHHH
Confidence 9999999999999999999999999999998766655 789999999999999999999 45666664
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-38 Score=333.00 Aligned_cols=293 Identities=29% Similarity=0.458 Sum_probs=255.9
Q ss_pred CCCcHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCc--cCceeeCCCC--CcEEEEEcCCCCCcc--c
Q 047451 1 PLCHDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDCCL--WDGVKCNEDT--GHVVELDLASSCLYG--S 74 (778)
Q Consensus 1 ~~c~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~c~--w~~v~c~~~~--~~v~~L~Ls~~~l~~--~ 74 (778)
+.|.++|++||++||+++.++. .+.+|.. +.+||. |.||.|...+ ++|++|+|+++.+.+ .
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~----------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~ 67 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPT----------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP 67 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCG----------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE
T ss_pred CCCCHHHHHHHHHHHHhcCCcc----------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcc
Confidence 5799999999999999996531 5789976 578998 9999998655 899999999999998 7
Q ss_pred cCCccccccCCCCCEEeCCC-CCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccc
Q 047451 75 VNSTSSLFQLVHLQRLSLFD-NNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKL 153 (778)
Q Consensus 75 ~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~ 153 (778)
++. .+.++++|++|+|++ |.+.+. +|..++++++|++|++++|.+++.+|..|.++++|++|++++|.|+
T Consensus 68 ~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~------ 138 (313)
T 1ogq_A 68 IPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS------ 138 (313)
T ss_dssp CCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE------
T ss_pred cCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC------
Confidence 776 899999999999995 888765 8999999999999999999999999999999999999999999653
Q ss_pred cCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCC-CCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC
Q 047451 154 QKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS-SLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP 232 (778)
Q Consensus 154 ~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 232 (778)
+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++| .+.+..+
T Consensus 139 --~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~ 214 (313)
T 1ogq_A 139 --GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDAS 214 (313)
T ss_dssp --SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCG
T ss_pred --CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCC
Confidence 35777889999999999999999988999999998 999999999999988999998887 999999998 5665555
Q ss_pred -CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCC
Q 047451 233 -QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLT 311 (778)
Q Consensus 233 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (778)
.+..+++|+.|++++|.+++.++. +..+++|++|++++ |.+++.+|..+..+++|+.|++++|++++.+|.. ..++
T Consensus 215 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~ 291 (313)
T 1ogq_A 215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRN-NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291 (313)
T ss_dssp GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCS-SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcC-CcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence 788888999999999988866655 77788899999988 8888888888888888999999998888877775 7788
Q ss_pred CCCcccccccc
Q 047451 312 QLDSLTISDSN 322 (778)
Q Consensus 312 ~L~~L~L~~n~ 322 (778)
+|+.+++++|+
T Consensus 292 ~L~~l~l~~N~ 302 (313)
T 1ogq_A 292 RFDVSAYANNK 302 (313)
T ss_dssp GSCGGGTCSSS
T ss_pred ccChHHhcCCC
Confidence 88888888886
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.8e-37 Score=337.87 Aligned_cols=341 Identities=22% Similarity=0.265 Sum_probs=206.1
Q ss_pred CCCCCEEecccCCCCcccCC-CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCe
Q 047451 213 LPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKT 291 (778)
Q Consensus 213 l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~ 291 (778)
.+.|++|++++| .+ +.+| .++++++|++|++++|.+.+.+|..++.+++|+.+++.+|. ..++++
T Consensus 10 ~~~L~~L~l~~n-~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------HHTCSE
T ss_pred cccchhhhcccC-ch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------ccCCCE
Confidence 355555555555 33 3333 45555555555555555555555555554444333332210 023477
Q ss_pred ecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccC
Q 047451 292 LEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCN 371 (778)
Q Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~ 371 (778)
|++++|.+++. |. -.++|++|++++|.+++ .|. .+++|++|++++|.+.+... ..++|++|++++|.
T Consensus 76 L~l~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~------~~~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 76 LELNNLGLSSL-PE---LPPHLESLVASCNSLTE-LPE------LPQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQ 142 (454)
T ss_dssp EECTTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCC------CCTTCCEEECCSSCCSCCCS--CCTTCCEEECCSSC
T ss_pred EEecCCccccC-CC---CcCCCCEEEccCCcCCc-ccc------ccCCCcEEECCCCccCcccC--CCCCCCEEECcCCC
Confidence 77777777643 22 13567777777777776 333 13677777777777765222 12678888888888
Q ss_pred CCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCC
Q 047451 372 LSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLP 451 (778)
Q Consensus 372 l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 451 (778)
++.+| .+..+++|++|++++|++++ +|. ...+|++|++++|.+.+++ .+..+++|+.|++++|.+++...
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~-----~~~~L~~L~L~~n~l~~l~---~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLKK-LPD-----LPPSLEFIAAGNNQLEELP---ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCcc-cCC-----CcccccEEECcCCcCCcCc---cccCCCCCCEEECCCCcCCcCCC
Confidence 87777 47778888888888887773 554 3357888888888877754 35667788888888888776322
Q ss_pred chhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCc
Q 047451 452 IPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNL 531 (778)
Q Consensus 452 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 531 (778)
...+++++++++|.++ .+| .+..+++|++|++++|++++ +|..+ . +|++|++++|++++ +|.. .++|
T Consensus 213 --~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~---~-~L~~L~l~~N~l~~-l~~~---~~~L 279 (454)
T 1jl5_A 213 --LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDLP---P-SLEALNVRDNYLTD-LPEL---PQSL 279 (454)
T ss_dssp --CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSCC---T-TCCEEECCSSCCSC-CCCC---CTTC
T ss_pred --CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccccc---c-ccCEEECCCCcccc-cCcc---cCcC
Confidence 2357788888888777 555 37778888888888888774 44322 2 68888888888775 3332 3677
Q ss_pred cEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCC-CCCCEEEccCccccccCCCCccccccCcCcEEEcC
Q 047451 532 RMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTL-PELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLS 608 (778)
Q Consensus 532 ~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls 608 (778)
++|++++|++ +|.. .++|++|++++|+++++. .+ ++|++|++++|+++++ |. .+++|++|+++
T Consensus 280 ~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~l-p~-----~~~~L~~L~L~ 345 (454)
T 1jl5_A 280 TFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIEL-PA-----LPPRLERLIAS 345 (454)
T ss_dssp CEEECCSSCCSEESCC---CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECC
T ss_pred CEEECcCCccCcccCc---CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCccccc-cc-----cCCcCCEEECC
Confidence 8888888877 2221 257788888888777631 22 4778888888887763 22 24677888888
Q ss_pred CCcCCCCCCh
Q 047451 609 HNRFAGNLPS 618 (778)
Q Consensus 609 ~N~l~~~ip~ 618 (778)
+|+++ .+|.
T Consensus 346 ~N~l~-~lp~ 354 (454)
T 1jl5_A 346 FNHLA-EVPE 354 (454)
T ss_dssp SSCCS-CCCC
T ss_pred CCccc-cccc
Confidence 88777 5664
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7e-37 Score=337.22 Aligned_cols=387 Identities=22% Similarity=0.237 Sum_probs=164.5
Q ss_pred CCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCC-------------CEEEccc
Q 047451 133 LSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL-------------HFLSLSG 199 (778)
Q Consensus 133 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~ 199 (778)
.++|++|++++|.+ +.+|..++++++|++|++++|++.+..|..++.+++| ++|++++
T Consensus 10 ~~~L~~L~l~~n~l---------~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL---------TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred cccchhhhcccCch---------hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 47788888888865 4567777788888888888887777777777777654 6666666
Q ss_pred CcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccC
Q 047451 200 CRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNEL 279 (778)
Q Consensus 200 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~ 279 (778)
|.+++ +|. -.++|++|++++| .+++ ++. ..++|++|++++|.+++. +.. .++|++|++++ |.+++ +
T Consensus 81 ~~l~~-lp~---~~~~L~~L~l~~n-~l~~-lp~--~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~-n~l~~-l 146 (454)
T 1jl5_A 81 LGLSS-LPE---LPPHLESLVASCN-SLTE-LPE--LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSN-NQLEK-L 146 (454)
T ss_dssp SCCSC-CCS---CCTTCSEEECCSS-CCSS-CCC--CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCS-SCCSS-C
T ss_pred Ccccc-CCC---CcCCCCEEEccCC-cCCc-ccc--ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcC-CCCCC-C
Confidence 66653 332 1245666666655 3333 221 124555666665555531 111 14555555555 45544 3
Q ss_pred CccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCC
Q 047451 280 PPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNT 359 (778)
Q Consensus 280 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 359 (778)
| .++.+++|++|++++|++++ +|.. .++|++|++++|.+++. | .+..+++|++|++++|.+.+... ..
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~----~~~~l~~L~~L~l~~N~l~~l~~--~~ 214 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P----ELQNLPFLTAIYADNNSLKKLPD--LP 214 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C----CCTTCTTCCEEECCSSCCSSCCC--CC
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c----cccCCCCCCEEECCCCcCCcCCC--Cc
Confidence 3 35555555555555555553 2221 23555555555555542 2 23445555555555555443111 12
Q ss_pred cccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEE
Q 047451 360 QKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGAL 439 (778)
Q Consensus 360 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 439 (778)
++|++|++++|.+..+|. +..+++|++|++++|++++ +|. .+++|++|++++|.+.+++..
T Consensus 215 ~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~~l~~~------------ 275 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLTDLPEL------------ 275 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCSCCCCC------------
T ss_pred CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCcccccCcc------------
Confidence 344445555544444442 4444444444444444442 222 123444444444444432221
Q ss_pred EcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccc
Q 047451 440 DLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHG 519 (778)
Q Consensus 440 ~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 519 (778)
...++++++++|.+++. |. -.++|++|++++|++++ ++ ..+.+|++|++++|++++
T Consensus 276 ---------------~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 276 ---------------PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp ---------------CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred ---------------cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence 23344444444444331 10 01355566666665553 11 122246666666666654
Q ss_pred cCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCC--CCcccccCCCCCCEEEccCccccccCCCCcc
Q 047451 520 FIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITD--FFPSWLGTLPELEVLILKSNNFHGVIEEPNA 595 (778)
Q Consensus 520 ~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 595 (778)
+|.. +++|++|++++|++ +|. .+++|++|++++|++++ .+|.++..+ +.|.+.+.+|.
T Consensus 332 -lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~--- 393 (454)
T 1jl5_A 332 -LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE--- 393 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC----------
T ss_pred -cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc---
Confidence 3322 35566666666666 444 35666666666666666 344433322 22333333222
Q ss_pred ccccCcCcEEEcCCCcCCC--CCC
Q 047451 596 CFEFVKLRIIDLSHNRFAG--NLP 617 (778)
Q Consensus 596 ~~~l~~L~~L~ls~N~l~~--~ip 617 (778)
.+++|++||+++|++++ .+|
T Consensus 394 --~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 394 --LPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp ------------------------
T ss_pred --ccCcCCEEECCCCcCCccccch
Confidence 12556666666666665 455
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.9e-36 Score=333.31 Aligned_cols=383 Identities=18% Similarity=0.190 Sum_probs=297.5
Q ss_pred CCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCC-ChhhcCCC
Q 047451 136 LEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEF-PQEIFQLP 214 (778)
Q Consensus 136 L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~ 214 (778)
-+.++.+++.++.+ |. -.++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|..++
T Consensus 12 ~~~~~c~~~~l~~l---------p~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~ 79 (455)
T 3v47_A 12 GYNAICINRGLHQV---------PE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79 (455)
T ss_dssp TTEEECCSSCCSSC---------CC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCT
T ss_pred ccccCcCCCCcccC---------CC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccc
Confidence 45688888866443 33 2378999999999999988999999999999999999987544 66799999
Q ss_pred CCCEEecccCCCCcccCC-CCCCCCCCCEEeccCCcCCccCccc--ccCCCCCCeEeccCCCCCcccCCcc-ccCCCCCC
Q 047451 215 NLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFSGKIPSS--LGNLTKLEDLYLSGGNGFSNELPPS-IGNLASLK 290 (778)
Q Consensus 215 ~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~n~l~~~~~~~-l~~l~~L~ 290 (778)
+|++|++++| .+....+ .+.++++|++|++++|.+++..+.. +..+++|++|++++ |.+++..|.. +..+++|+
T Consensus 80 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 80 SLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp TCCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCC
T ss_pred cCCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCccc
Confidence 9999999999 5555544 8999999999999999998755555 89999999999998 8898887776 88999999
Q ss_pred eecccccccCCchhhhccCC--CCCCcccccccccCCCCCcchhh-----hcCCCCCcEEecCCCCCCcCCCCCCCcccc
Q 047451 291 TLEISSFNFSGTLQASLGNL--TQLDSLTISDSNFSGPMSSSLSW-----LTNLNQLTSLNFPNCNLNEPLLVPNTQKFE 363 (778)
Q Consensus 291 ~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~ 363 (778)
+|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+.. +..+++|++|++++|.+.+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----------- 226 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE----------- 226 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-----------
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-----------
Confidence 99999999998888888776 78999999999998765542211 1233455555555555443
Q ss_pred eeeccccCCCCCCchhcc---cccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCC-CCCCCCCCCCEE
Q 047451 364 IIGLRSCNLSEFPSFLHN---QDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHN-LPVLPWNNLGAL 439 (778)
Q Consensus 364 ~L~L~~n~l~~lp~~l~~---l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L 439 (778)
..|..+.. .++|+.|++++|...+.... .+.+...... ......++|+.|
T Consensus 227 ----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~L~~L 280 (455)
T 3v47_A 227 ----------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----------------HTNFKDPDNFTFKGLEASGVKTC 280 (455)
T ss_dssp ----------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTT----------------CCSSCCCCTTTTGGGTTSCCCEE
T ss_pred ----------cchhhhhccccccceeeEeeccccccccccc----------------hhhhccCcccccccccccCceEE
Confidence 22333322 36788888888876532111 0111111000 000011345555
Q ss_pred EcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccc
Q 047451 440 DLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHG 519 (778)
Q Consensus 440 ~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 519 (778)
++++| .+++..|..+..+++|++|++++|++++..|..+..++ +|++|++++|.+++
T Consensus 281 ~l~~n----------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 281 DLSKS----------------------KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGS 337 (455)
T ss_dssp ECCSS----------------------CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCE
T ss_pred EecCc----------------------cccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCC
Confidence 55544 44456677888899999999999999988888888888 79999999999998
Q ss_pred cCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCC
Q 047451 520 FIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEE 592 (778)
Q Consensus 520 ~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 592 (778)
..+..|..+++|++|++++|++ .|..+..+++|++|++++|+++++.+..|..+++|++|++++|++++..|.
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 8899999999999999999999 588899999999999999999998888899999999999999999987653
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.2e-36 Score=332.23 Aligned_cols=365 Identities=21% Similarity=0.210 Sum_probs=235.9
Q ss_pred HhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCC
Q 047451 161 LAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPL 240 (778)
Q Consensus 161 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 240 (778)
.++++++|++|++++|.+++. | .+..+++|++|++++|.+++. | +..+++|++|++++| .+++. .+..+++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N-~l~~~--~~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSN-KLTNL--DVTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSS-CCSCC--CCTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCC-CCcee--ecCCCCcC
Confidence 455566677777777666653 3 466666677777776666642 2 556666666666666 33332 25555566
Q ss_pred CEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccc
Q 047451 241 EDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISD 320 (778)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (778)
++|++++|.+++. + +..+++|++|++++ |.+++. .++.+++|+.|++++|...+.+ .+..+++|++|++++
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~-N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCAR-NTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTT-SCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCC-Ccccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 6666666655542 2 55555555555555 445442 1444555555555555333222 244444444444444
Q ss_pred cccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCc
Q 047451 321 SNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIP 400 (778)
Q Consensus 321 n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~ 400 (778)
|+ +++ .+...+++|+.|++++|.++.++ +..+++|++|++++|++++ +|
T Consensus 180 n~---------------------------l~~-l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 180 NK---------------------------ITE-LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp SC---------------------------CCC-CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC
T ss_pred Cc---------------------------cce-eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC
Confidence 44 444 22334455555555555555542 5566677777777777764 44
Q ss_pred hhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCC
Q 047451 401 EWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLN 480 (778)
Q Consensus 401 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~ 480 (778)
+. .+++|+.|++++|.+++.+ ...+++|+.|++++|++ +.+++++|.+.+.+| ++.++
T Consensus 229 --~~--~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~L------------~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 229 --VT--PLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTDL------------LEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp --CT--TCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCCC------------SCCCCTTCTTCCEEE--CTTCT
T ss_pred --cc--ccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCCC------------CEEECCCCccCCccc--ccccc
Confidence 22 6677777777777776653 33457788888777654 467778887776666 46788
Q ss_pred cccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCccChhhhhCCCCCCEEeCCCC
Q 047451 481 GLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLVPKSLANCVKLKFLDLGDN 560 (778)
Q Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~l~~l~~L~~L~Ls~N 560 (778)
+|++|++++|...+.+|.. .. +|+.|++++| ++|++|++++|++..-.+..+++|+.|++++|
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~---~~-~L~~L~l~~~-------------~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQ---AA-GITELDLSQN-------------PKLVYLYLNNTELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCCCCCCTTCTTCCEEECT---TC-CCSCCCCTTC-------------TTCCEEECTTCCCSCCCCTTCTTCSEEECCSS
T ss_pred cCCEEECCCCcccceeccC---CC-cceEechhhc-------------ccCCEEECCCCcccccccccCCcCcEEECCCC
Confidence 9999999999887776642 23 4666666554 68899999999992224889999999999999
Q ss_pred cCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccc
Q 047451 561 QITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAM 627 (778)
Q Consensus 561 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l 627 (778)
+++++ +.|..|++++|.+.|. ..+..|+.+++++|+++|.||..++..+..+
T Consensus 350 ~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~ 401 (457)
T 3bz5_A 350 HIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401 (457)
T ss_dssp CCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBTTBEEEECCTTCBCTTSCC
T ss_pred CCCCc--------cccccccccCCcEEec-------ceeeecCccccccCcEEEEcChhHhcccCce
Confidence 99873 4677788999999876 3567788999999999999998876655544
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.7e-34 Score=312.78 Aligned_cols=357 Identities=18% Similarity=0.168 Sum_probs=271.2
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchh
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLA 159 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~ 159 (778)
.+.++++|++|++++|.+.+ +| .++.+++|++|++++|.+++. | ++.+++|++|++++|.++.+ +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---------~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---------D 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---------C
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---------e
Confidence 67788999999999998865 45 688999999999999999864 4 88899999999999976443 2
Q ss_pred HHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCC
Q 047451 160 NLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSP 239 (778)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 239 (778)
++++++|++|++++|++++. + ++.+++|++|++++|++++. + +..+++|++|++++|. ..+.. .+..+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~-~~~~~-~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK-KITKL-DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS-CCCCC-CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCC-ccccc-ccccCCc
Confidence 67889999999999998874 3 88899999999999999863 3 7889999999999984 33333 5778899
Q ss_pred CCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccc
Q 047451 240 LEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTIS 319 (778)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (778)
|++|++++|.+++. | +..+++|++|++++ |.+++. .++.+++|+.|++++|++++ +| +..+++|++|+++
T Consensus 172 L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~-N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 172 LTTLDCSFNKITEL-D--VSQNKLLNRLNCDT-NNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp CCEEECCSSCCCCC-C--CTTCTTCCEEECCS-SCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred CCEEECCCCcccee-c--cccCCCCCEEECcC-CcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 99999999999863 4 78889999999998 888765 37888999999999999987 45 7888999999999
Q ss_pred ccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCC-CCCchhcccccccEEeccCCcCCCC
Q 047451 320 DSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLS-EFPSFLHNQDQLISLDLSSNMIAGK 398 (778)
Q Consensus 320 ~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~Ls~n~l~~~ 398 (778)
+|++++.. ...+++|+.|++++|. |+.+++++|.+. .+| +..+++|+.|++++|...+.
T Consensus 242 ~N~l~~~~------~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 242 VNPLTELD------VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp SSCCSCCC------CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred CCcCCCcC------HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 99988753 3456788888887653 556777777654 454 45678888888888887766
Q ss_pred CchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhc
Q 047451 399 IPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICS 478 (778)
Q Consensus 399 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~ 478 (778)
+|. ....|+.|++++| ++|+.|++++|++++. +..-++.|+.|++++|++++
T Consensus 302 l~~-----~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~l~~l~~L~~L~l~~N~l~~-------- 353 (457)
T 3bz5_A 302 LDC-----QAAGITELDLSQN--------------PKLVYLYLNNTELTEL-DVSHNTKLKSLSCVNAHIQD-------- 353 (457)
T ss_dssp EEC-----TTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-CCTTCTTCSEEECCSSCCCB--------
T ss_pred ecc-----CCCcceEechhhc--------------ccCCEEECCCCccccc-ccccCCcCcEEECCCCCCCC--------
Confidence 664 3456666666655 6778888888888764 33336667777777776664
Q ss_pred CCcccccccccccccccCChhhccccccccEEECCCCcccccCcccc
Q 047451 479 LNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETF 525 (778)
Q Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 525 (778)
++.|..|++++|.+.|. ..+. .|+.+++++|+++|.+|..+
T Consensus 354 l~~L~~L~l~~n~l~g~-----~~~~-~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 FSSVGKIPALNNNFEAE-----GQTI-TMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CTTGGGSSGGGTSEEEE-----EEEE-ECCCBCCBTTBEEEECCTTC
T ss_pred ccccccccccCCcEEec-----ceee-ecCccccccCcEEEEcChhH
Confidence 24566667777776654 2233 46667777777776666543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.4e-33 Score=309.08 Aligned_cols=344 Identities=24% Similarity=0.309 Sum_probs=180.4
Q ss_pred cCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHh
Q 047451 83 QLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLA 162 (778)
Q Consensus 83 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~ 162 (778)
.++++++|+++++.+.. +| .+..+++|++|++++|.+.+. |. +..+++|++|++++|.++. ++. +
T Consensus 44 ~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~---------~~~-~ 108 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIAD---------ITP-L 108 (466)
T ss_dssp HHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC---------CGG-G
T ss_pred HhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCcccc---------Chh-h
Confidence 34556666666665532 33 255566666666666666533 22 5666666666666665422 122 5
Q ss_pred hcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCE
Q 047451 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLED 242 (778)
Q Consensus 163 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 242 (778)
.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+.|+++++ ... .+.+.++++|++
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~--~~~-~~~~~~l~~L~~ 181 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQ--VTD-LKPLANLTTLER 181 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEES--CCC-CGGGTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCc--ccC-chhhccCCCCCE
Confidence 556666666666666655432 5666666666666666653 22 3556666666666432 111 123555566666
Q ss_pred EeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccc
Q 047451 243 LRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSN 322 (778)
Q Consensus 243 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (778)
|++++|.+++. ..+..+++|++|++++ |.+.+..+ ++.+++|+.|++++|.+.+. ..+..+++|++|++++|.
T Consensus 182 L~l~~n~l~~~--~~l~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 182 LDISSNKVSDI--SVLAKLTNLESLIATN-NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EECcCCcCCCC--hhhccCCCCCEEEecC-Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc
Confidence 66666665532 2355566666666665 55544333 44555666666666655543 235555566666666665
Q ss_pred cCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchh
Q 047451 323 FSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEW 402 (778)
Q Consensus 323 l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~ 402 (778)
+.+..+ +..+++|+.|++++|.+.+..+...+++|+.|++++|.+..++. +..+++|++|++++|++++..|
T Consensus 255 l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-- 326 (466)
T 1o6v_A 255 ISNLAP-----LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-- 326 (466)
T ss_dssp CCCCGG-----GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--
T ss_pred cccchh-----hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--
Confidence 554321 44555556666655555554444455555555555555555443 4555566666666665554333
Q ss_pred HHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCcc
Q 047451 403 LFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQL 468 (778)
Q Consensus 403 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l 468 (778)
+. .+++|+.|++++|.+.+.. .+..+++|+.|++++|++++..|....+.++.+++++|.+
T Consensus 327 ~~--~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 327 VS--SLTKLQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp GG--GCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEE
T ss_pred hc--cCccCCEeECCCCccCCch---hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcc
Confidence 21 4555555555555555542 2334455555555555555433322233333333333333
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.4e-33 Score=311.99 Aligned_cols=349 Identities=25% Similarity=0.339 Sum_probs=209.9
Q ss_pred CCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeE
Q 047451 188 NLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDL 267 (778)
Q Consensus 188 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 267 (778)
.+++++.|+++++.+. .+| .+..+++|++|++++| .+....+ +..+++|++|++++|.+++..+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3567888888888876 344 3667777788777777 4444433 6677777777777777765443 6667777777
Q ss_pred eccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCC
Q 047451 268 YLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPN 347 (778)
Q Consensus 268 ~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~ 347 (778)
++++ |.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+..+++|++|++++
T Consensus 118 ~L~~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~-----~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 118 TLFN-NQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK-----PLANLTTLERLDISS 186 (466)
T ss_dssp ECCS-SCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG-----GGTTCTTCCEEECCS
T ss_pred ECCC-CCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch-----hhccCCCCCEEECcC
Confidence 7766 55554422 66666666666666666543 2 35666666666664 2222211 244455555555555
Q ss_pred CCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCC
Q 047451 348 CNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHN 427 (778)
Q Consensus 348 n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 427 (778)
|.+. .++ .+..+++|++|++++|.+.+..+ +. .+++|+.|++++|.+.+..
T Consensus 187 n~l~----------------------~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~-- 237 (466)
T 1o6v_A 187 NKVS----------------------DIS-VLAKLTNLESLIATNNQISDITP--LG--ILTNLDELSLNGNQLKDIG-- 237 (466)
T ss_dssp SCCC----------------------CCG-GGGGCTTCSEEECCSSCCCCCGG--GG--GCTTCCEEECCSSCCCCCG--
T ss_pred CcCC----------------------CCh-hhccCCCCCEEEecCCccccccc--cc--ccCCCCEEECCCCCcccch--
Confidence 5443 332 24556666666666666654333 22 4556666666666555442
Q ss_pred CCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccc
Q 047451 428 LPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQL 507 (778)
Q Consensus 428 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L 507 (778)
.+..+++|+.|++++|.+.+.. + +..+++|++|++++|.+++..+ +..++ +|
T Consensus 238 -~l~~l~~L~~L~l~~n~l~~~~----------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L 289 (466)
T 1o6v_A 238 -TLASLTNLTDLDLANNQISNLA----------------------P--LSGLTKLTELKLGANQISNISP--LAGLT-AL 289 (466)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCG----------------------G--GTTCTTCSEEECCSSCCCCCGG--GTTCT-TC
T ss_pred -hhhcCCCCCEEECCCCccccch----------------------h--hhcCCCCCEEECCCCccCcccc--ccCCC-cc
Confidence 2334456666666666554322 1 4556666666666666664322 44555 56
Q ss_pred cEEECCCCcccccCcccccCCCCccEEECCCCcc-ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccc
Q 047451 508 WVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNF 586 (778)
Q Consensus 508 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 586 (778)
++|++++|++++..+ +..+++|+.|++++|++ ....+..+++|++|++++|++++. ..+..+++|+.|++++|++
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 666666666665433 56666777777777766 112256677777777777777765 3567777777777777777
Q ss_pred cccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 587 HGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 587 ~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
++..| + ..+++|+.|++++|++++ +|..
T Consensus 366 ~~~~~--~--~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 366 SDLTP--L--ANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp CBCGG--G--TTCTTCCEEECCCEEEEC-CCBC
T ss_pred Cccch--h--hcCCCCCEEeccCCcccC-Cchh
Confidence 76654 2 567777777777777774 4543
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-33 Score=309.24 Aligned_cols=325 Identities=17% Similarity=0.107 Sum_probs=219.2
Q ss_pred EEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccc
Q 047451 242 DLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDS 321 (778)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (778)
.++.+++.++ .+|..+ .++++.|++++ |.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~--~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI--PTETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC--CTTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC--CCCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4555555554 333333 23556666665 5555555555555666666666666555555555555555555555555
Q ss_pred ccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCch
Q 047451 322 NFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPE 401 (778)
Q Consensus 322 ~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~ 401 (778)
.+++..+. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+.
T Consensus 91 ~l~~~~~~---~~~~l~~L~~L~Ls~n~i~~~---------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~ 146 (477)
T 2id5_A 91 RLKLIPLG---VFTGLSNLTKLDISENKIVIL---------------------LDYMFQDLYNLKSLEVGDNDLVYISHR 146 (477)
T ss_dssp CCCSCCTT---SSTTCTTCCEEECTTSCCCEE---------------------CTTTTTTCTTCCEEEECCTTCCEECTT
T ss_pred cCCccCcc---cccCCCCCCEEECCCCccccC---------------------ChhHccccccCCEEECCCCccceeChh
Confidence 55543333 233344444444444333221 123455566666666666666543333
Q ss_pred hHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchh--hcccceeEecCCccccCCchhhhcC
Q 047451 402 WLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPI--SVLTSSYLVSNNQLTGEIPPSICSL 479 (778)
Q Consensus 402 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~l~~n~l~~~~~~~~~~l 479 (778)
.+. .++ +|+.|++++|.+++..+..+ .+.|+.|++++|.+.+..+..|..+
T Consensus 147 ~~~--~l~-------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l 199 (477)
T 2id5_A 147 AFS--GLN-------------------------SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199 (477)
T ss_dssp SST--TCT-------------------------TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSC
T ss_pred hcc--CCC-------------------------CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccC
Confidence 333 444 45555555554444333222 4555666666666666666778889
Q ss_pred CcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEe
Q 047451 480 NGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLD 556 (778)
Q Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~ 556 (778)
++|++|++++|...+.+|....... +|++|++++|.+++..+..|..+++|++|+|++|.+ .+..|..+++|++|+
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEE
T ss_pred cccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEE
Confidence 9999999999988777777766666 799999999999977667889999999999999998 566788999999999
Q ss_pred CCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhcc
Q 047451 557 LGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECW 624 (778)
Q Consensus 557 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~ 624 (778)
|++|+++++.|..|.++++|+.|+|++|+++++.+..+ ..+++|++|++++|+++|.++..|+..+
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~c~c~~~~~~~~ 344 (477)
T 2id5_A 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF--HSVGNLETLILDSNPLACDCRLLWVFRR 344 (477)
T ss_dssp CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB--SCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc--CCCcccCEEEccCCCccCccchHhHHhh
Confidence 99999999999999999999999999999998765544 7789999999999999999887777544
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.8e-32 Score=291.98 Aligned_cols=311 Identities=21% Similarity=0.188 Sum_probs=208.9
Q ss_pred ccCCCCCEEeCCCCCCCCCCCch-hhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhH
Q 047451 82 FQLVHLQRLSLFDNNFNFSEIPS-EILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLAN 160 (778)
Q Consensus 82 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~ 160 (778)
..++++++|+++++.+.. +|. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.++.+ .+.
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~ 111 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL--------PPH 111 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC--------CTT
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC--------CHH
Confidence 456889999999888754 454 468889999999999998877777888899999999999876432 345
Q ss_pred HhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCC
Q 047451 161 LAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPL 240 (778)
Q Consensus 161 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 240 (778)
.+.++++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++| .++.. .+..+++|
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~l~~L 188 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIPSL 188 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBC--CGGGCTTC
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCcc--cccccccc
Confidence 6778888888888888888666666788888888888888888766777888888888888887 33332 34556777
Q ss_pred CEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccc
Q 047451 241 EDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISD 320 (778)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (778)
+.|++++|.+++ +...++|++|++++ |.+..... ...++|+.|++++|.+++. ..+..+++|++|++++
T Consensus 189 ~~L~l~~n~l~~-----~~~~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 189 FHANVSYNLLST-----LAIPIAVEELDASH-NSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp SEEECCSSCCSE-----EECCSSCSEEECCS-SCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ceeecccccccc-----cCCCCcceEEECCC-Ceeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 777777776653 23345677777776 55554322 1235677777777766643 3466666666666666
Q ss_pred cccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCc
Q 047451 321 SNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIP 400 (778)
Q Consensus 321 n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~ 400 (778)
|.+.+..+. .+..+++|++|++++|.+. .+|..+..+++|++|++++|++. .+|
T Consensus 258 n~l~~~~~~---~~~~l~~L~~L~L~~n~l~----------------------~~~~~~~~l~~L~~L~L~~n~l~-~~~ 311 (390)
T 3o6n_A 258 NELEKIMYH---PFVKMQRLERLYISNNRLV----------------------ALNLYGQPIPTLKVLDLSHNHLL-HVE 311 (390)
T ss_dssp SCCCEEESG---GGTTCSSCCEEECCSSCCC----------------------EEECSSSCCTTCCEEECCSSCCC-CCG
T ss_pred CcCCCcChh---HccccccCCEEECCCCcCc----------------------ccCcccCCCCCCCEEECCCCcce-ecC
Confidence 666655554 4555566666666655554 34434444556666666666655 344
Q ss_pred hhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcC
Q 047451 401 EWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQG 448 (778)
Q Consensus 401 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 448 (778)
..+. .+++|++|++++|.++.++ +..+++|+.|++++|++..
T Consensus 312 ~~~~--~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 312 RNQP--QFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp GGHH--HHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEH
T ss_pred cccc--ccCcCCEEECCCCccceeC----chhhccCCEEEcCCCCccc
Confidence 4443 4556666666666665542 3345677777777777654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=9.7e-32 Score=292.02 Aligned_cols=321 Identities=22% Similarity=0.170 Sum_probs=199.2
Q ss_pred CCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcc
Q 047451 237 SSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSL 316 (778)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (778)
+.+++.|+++++.++...+..+..+++|++|++++ +.+.+..+..|..+++|++|++++|.+.+..|..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34555666666665544444455566666666665 55555555556666666666666666665555555666666666
Q ss_pred cccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCC
Q 047451 317 TISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIA 396 (778)
Q Consensus 317 ~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 396 (778)
++++|.++...+. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|+++
T Consensus 123 ~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLSSLPRG---IFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCBCC---------------------TTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCcCCHH---HhcCCCCCcEEECCCCccCccC---------------------hhhccCCCCCCEEECCCCcCC
Confidence 6666655543332 2344455555555544443311 123455556666666666655
Q ss_pred CCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhh
Q 047451 397 GKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSI 476 (778)
Q Consensus 397 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~ 476 (778)
+. +. . .+++|+.|++++|.+..+... ++|+.|++++|.+... |..
T Consensus 179 ~~-~~--~--~l~~L~~L~l~~n~l~~~~~~------~~L~~L~l~~n~l~~~-----------------------~~~- 223 (390)
T 3o6n_A 179 HV-DL--S--LIPSLFHANVSYNLLSTLAIP------IAVEELDASHNSINVV-----------------------RGP- 223 (390)
T ss_dssp BC-CG--G--GCTTCSEEECCSSCCSEEECC------SSCSEEECCSSCCCEE-----------------------ECC-
T ss_pred cc-cc--c--cccccceeecccccccccCCC------CcceEEECCCCeeeec-----------------------ccc-
Confidence 32 21 1 445566666666655544322 4566666666655421 111
Q ss_pred hcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCE
Q 047451 477 CSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKF 554 (778)
Q Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~ 554 (778)
..++|++|++++|++++. ..+..++ +|++|++++|.+++..|..|..+++|++|++++|++ +|..+..+++|++
T Consensus 224 -~~~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 224 -VNVELTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 299 (390)
T ss_dssp -CCSSCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCE
T ss_pred -ccccccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCE
Confidence 134566677777766642 3455555 577777777777777777777777777888877777 5556677888899
Q ss_pred EeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccc
Q 047451 555 LDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAM 627 (778)
Q Consensus 555 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l 627 (778)
|++++|+++++ |..+..+++|++|++++|+++... + ..+++|+.|++++|+++|.....++..+...
T Consensus 300 L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~---~--~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 300 LDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK---L--STHHTLKNLTLSHNDWDCNSLRALFRNVARP 366 (390)
T ss_dssp EECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC---C--CTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred EECCCCcceec-CccccccCcCCEEECCCCccceeC---c--hhhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence 99999988864 556778888999999999987652 2 5678999999999999887666666655543
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=2.8e-31 Score=296.60 Aligned_cols=229 Identities=23% Similarity=0.210 Sum_probs=138.1
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhc
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAEN 164 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~ 164 (778)
+++++|+|++|.+... .+..|.++++|++|+|++|.+.+..|.+|.++++|++|+|++|.++.+ .+..+.+
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI--------PLGVFTG 102 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC--------CTTSSTT
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc--------CcccccC
Confidence 5788888888887654 456778888888888888888877777788888888888888865432 2234566
Q ss_pred CCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEE
Q 047451 165 LTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDL 243 (778)
Q Consensus 165 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L 243 (778)
+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++| .++...+ .+..+++|+.|
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEE
Confidence 777777777777777666666777777777777777766555656666666666666666 3333222 34555555555
Q ss_pred eccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccccc
Q 047451 244 RLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNF 323 (778)
Q Consensus 244 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (778)
++++|.+.+..+..|..+++|++|++++ +...+.++.......+|+.|++++|.++...+..+..+++|++|++++|.+
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISH-WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEEC-CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCC-CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 5555555554444555555555555554 333333333333333455555555544433333444444444444444444
Q ss_pred C
Q 047451 324 S 324 (778)
Q Consensus 324 ~ 324 (778)
+
T Consensus 261 ~ 261 (477)
T 2id5_A 261 S 261 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=4.3e-31 Score=282.26 Aligned_cols=306 Identities=22% Similarity=0.281 Sum_probs=210.0
Q ss_pred ccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCC
Q 047451 258 LGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNL 337 (778)
Q Consensus 258 ~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l 337 (778)
+..+++|++|++++ +.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+..+
T Consensus 40 ~~~l~~L~~L~l~~-~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~----~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAG-EKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S----ALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCS-SCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G----GGTTC
T ss_pred chhcccccEEEEeC-Cccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h----HHcCC
Confidence 45677788888877 666543 2 36777788888888887775443 77777888888888777643 1 46667
Q ss_pred CCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEecc
Q 047451 338 NQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLS 417 (778)
Q Consensus 338 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls 417 (778)
++|++|++++|.+.+..+...+++|+.|++++|.....+..+..+++|++|++++|.+.+..+ +. .+++|++|+++
T Consensus 110 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~--~l~~L~~L~l~ 185 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA--NLTDLYSLSLN 185 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECT
T ss_pred CcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc--cCCCCCEEEcc
Confidence 777777777777665444555566666666666433333335555566666666665542222 22 44555555555
Q ss_pred CCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCC
Q 047451 418 YNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP 497 (778)
Q Consensus 418 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (778)
+|.+.+... +.. .+.++.+++++|.+++..+ +..+++|++|++++|++++. +
T Consensus 186 ~n~l~~~~~---~~~----------------------l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~ 237 (347)
T 4fmz_A 186 YNQIEDISP---LAS----------------------LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-S 237 (347)
T ss_dssp TSCCCCCGG---GGG----------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G
T ss_pred CCccccccc---ccC----------------------CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-c
Confidence 554444332 233 4444555555555543322 77888889999999988854 3
Q ss_pred hhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 047451 498 ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPEL 576 (778)
Q Consensus 498 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 576 (778)
. +..++ +|++|++++|.+++. ..+..+++|++|++++|++ ....+..+++|++|++++|++++..+..+..+++|
T Consensus 238 ~-~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 238 P-LANLS-QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp G-GTTCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred c-hhcCC-CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 3 66666 799999999988864 4688889999999999988 33568889999999999999998888889999999
Q ss_pred CEEEccCccccccCCCCccccccCcCcEEEcCCCcCC
Q 047451 577 EVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 577 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 613 (778)
++|++++|++++..+ + ..+++|++||+++|+++
T Consensus 314 ~~L~L~~n~l~~~~~--~--~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--L--ASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--G--GGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--h--hhhhccceeehhhhccc
Confidence 999999999988765 3 67899999999999886
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=6.2e-31 Score=301.45 Aligned_cols=348 Identities=20% Similarity=0.187 Sum_probs=229.6
Q ss_pred CCCCCCCCCCCCCCCc----cCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcC
Q 047451 33 KVASWKLDEKNSDCCL----WDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILN 108 (778)
Q Consensus 33 ~~~~W~~~~~~~~~c~----w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 108 (778)
.+++|.. +.+||. |.++.|.. .++.......... .-..+.+++.+++++|.+... .+..+..
T Consensus 8 ~l~~~~~---~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~l-p~~~~~~ 73 (597)
T 3oja_B 8 NVKPRQP---EYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRKL-PAALLDS 73 (597)
T ss_dssp ---CCCS---EECCCCC--CCSEEECSC------EECSSCCCCEESC----SSGGGCCCSEEEESSCEESEE-CTHHHHH
T ss_pred cccCCCC---CCcCcccCcCceeEecCc------eecccccccccCc----ccccCCCceEEEeeCCCCCCc-CHHHHcc
Confidence 6788987 566764 66555541 1122111111111 223467889999999887543 2345788
Q ss_pred CCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcC
Q 047451 109 FSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLAN 188 (778)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 188 (778)
+++|++|+|++|.+.+..|..|+.+++|++|+|++|.|+.+ .+..++++++|++|++++|.+++..+..|.+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL--------PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC--------CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 99999999999999887777899999999999999976432 4456788888888888888888777777788
Q ss_pred CCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEe
Q 047451 189 LSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLY 268 (778)
Q Consensus 189 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 268 (778)
+++|++|++++|.+++..|..+..+++|++|++++| .+++. .+..+++|+.|++++|.+++ +...++|+.|+
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 217 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD 217 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBC--CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCc--ChhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence 888888888888888777778888888888888888 44432 34556777888888877653 23455677777
Q ss_pred ccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCC
Q 047451 269 LSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNC 348 (778)
Q Consensus 269 L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n 348 (778)
+++ |.+....+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|. .+..+++|+.|++++|
T Consensus 218 ls~-n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 218 ASH-NSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH---PFVKMQRLERLYISNN 288 (597)
T ss_dssp CCS-SCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG---GGTTCSSCCEEECTTS
T ss_pred ccC-Cccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH---HhcCccCCCEEECCCC
Confidence 776 6655433221 24677777777777653 4566677777777777777666555 5556666666666666
Q ss_pred CCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCC
Q 047451 349 NLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNL 428 (778)
Q Consensus 349 ~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 428 (778)
.+.+ +|..+..+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+...+
T Consensus 289 ~l~~----------------------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~--~l~~L~~L~L~~N~l~~~~--- 340 (597)
T 3oja_B 289 RLVA----------------------LNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTLK--- 340 (597)
T ss_dssp CCCE----------------------EECSSSCCTTCCEEECCSSCCC-CCGGGHH--HHTTCSEEECCSSCCCCCC---
T ss_pred CCCC----------------------CCcccccCCCCcEEECCCCCCC-ccCcccc--cCCCCCEEECCCCCCCCcC---
Confidence 5544 3333444555666666666555 4444443 4556666666666655442
Q ss_pred CCCCCCCCCEEEcCCCcCcC
Q 047451 429 PVLPWNNLGALDLRFNKLQG 448 (778)
Q Consensus 429 ~~~~~~~L~~L~L~~n~l~~ 448 (778)
+..+++|+.|++++|++.+
T Consensus 341 -~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp -CCTTCCCSEEECCSSCEEH
T ss_pred -hhhcCCCCEEEeeCCCCCC
Confidence 3345677777777777654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.5e-30 Score=276.35 Aligned_cols=308 Identities=25% Similarity=0.323 Sum_probs=201.5
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchh
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLA 159 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~ 159 (778)
.+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++.+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~---------- 103 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI---------- 103 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC----------
T ss_pred cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc----------
Confidence 56678899999999998854 44 48889999999999999884 444 88899999999999976432
Q ss_pred HHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCC
Q 047451 160 NLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSP 239 (778)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 239 (778)
+.+.++++|++|++++|.+.+..+ +..+++|++|++++|..... +..+..+++|++|++++| ...... .+..+++
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~-~~~~~~-~~~~l~~ 178 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTES-KVKDVT-PIANLTD 178 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTT
T ss_pred hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCC-CcCCch-hhccCCC
Confidence 247788888888888888876443 77888888888888865533 334777777777777777 333222 2566677
Q ss_pred CCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccc
Q 047451 240 LEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTIS 319 (778)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (778)
|++|++++|.+.+..+ +..+++|+.|++++ +.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYV-NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251 (347)
T ss_dssp CSEEECTTSCCCCCGG--GGGCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCEEEccCCccccccc--ccCCCccceeeccc-CCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECC
Confidence 7777777777664332 56666677777666 55554333 5566666666666666654433 5556666666666
Q ss_pred ccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCC
Q 047451 320 DSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKI 399 (778)
Q Consensus 320 ~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~ 399 (778)
+|.+++. . .+..+++|+.|++++|. ++.++ .+..+++|++|++++|++++..
T Consensus 252 ~n~l~~~--~---~~~~l~~L~~L~l~~n~----------------------l~~~~-~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 252 TNQISDI--N---AVKDLTKLKMLNVGSNQ----------------------ISDIS-VLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp SSCCCCC--G---GGTTCTTCCEEECCSSC----------------------CCCCG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred CCccCCC--h---hHhcCCCcCEEEccCCc----------------------cCCCh-hhcCCCCCCEEECcCCcCCCcC
Confidence 6655542 1 34445555555555554 44442 3556666777777777766555
Q ss_pred chhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCc
Q 047451 400 PEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQ 447 (778)
Q Consensus 400 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 447 (778)
+..+. .+++|++|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 304 ~~~l~--~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIG--GLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHH--TCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred hhHhh--ccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 55554 66666777777666666544 444567777777777654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.6e-31 Score=304.60 Aligned_cols=318 Identities=22% Similarity=0.180 Sum_probs=199.2
Q ss_pred CCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccc
Q 047451 238 SPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLT 317 (778)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (778)
.+++.+++++|.+....+..+..+++|+.|++++ |.+++..+..|+.+++|+.|+|++|.+.+..|..|+++++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 4455566666655544444455566666666665 555555555566666666666666666655555556666666666
Q ss_pred ccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCC
Q 047451 318 ISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAG 397 (778)
Q Consensus 318 L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 397 (778)
+++|.+++..+. .+..+++|++|++++|.+.+.. |..+..+++|++|++++|.+++
T Consensus 130 L~~n~l~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~---------------------~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 130 LERNDLSSLPRG---IFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCBCC---------------------TTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCCCCCCCHH---HhccCCCCCEEEeeCCcCCCCC---------------------hhhhhcCCcCcEEECcCCCCCC
Confidence 666655544333 3344455555555544443321 1234555566666666665553
Q ss_pred CCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhh
Q 047451 398 KIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSIC 477 (778)
Q Consensus 398 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~ 477 (778)
. +. ..+++|+.|++++|.+..+... ++|+.|++++|.+.... ..
T Consensus 186 ~-~~----~~l~~L~~L~l~~n~l~~l~~~------~~L~~L~ls~n~l~~~~-----------------------~~-- 229 (597)
T 3oja_B 186 V-DL----SLIPSLFHANVSYNLLSTLAIP------IAVEELDASHNSINVVR-----------------------GP-- 229 (597)
T ss_dssp C-CG----GGCTTCSEEECCSSCCSEEECC------TTCSEEECCSSCCCEEE-----------------------CS--
T ss_pred c-Ch----hhhhhhhhhhcccCccccccCC------chhheeeccCCcccccc-----------------------cc--
Confidence 2 21 1445556666666555544322 45666666666554211 11
Q ss_pred cCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEE
Q 047451 478 SLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFL 555 (778)
Q Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L 555 (778)
..++|+.|++++|.+++ +..+..++ +|++|+|++|.+++..|..|..+++|+.|+|++|.+ +|..+..+++|+.|
T Consensus 230 ~~~~L~~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 230 VNVELTILKLQHNNLTD--TAWLLNYP-GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306 (597)
T ss_dssp CCSCCCEEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred cCCCCCEEECCCCCCCC--ChhhccCC-CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence 12456667777776664 24556666 677777777777777777777777777888877777 56666778889999
Q ss_pred eCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 556 DLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 556 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
+|++|.+++ +|..+..+++|++|+|++|.+++.. + ..+++|+.|++++|+++|.+...++..+.
T Consensus 307 ~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~--~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 307 DLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---L--STHHTLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp ECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---C--CTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred ECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---h--hhcCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence 999999886 4666788899999999999987652 2 56789999999999999877666665554
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.7e-31 Score=276.80 Aligned_cols=282 Identities=20% Similarity=0.249 Sum_probs=160.9
Q ss_pred CCcHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCC-CCCCCCCccCceeeCC--------CCCcEEEEEcCCCCCc
Q 047451 2 LCHDHERSALLNFKESLVINRTASGYPSAYPKVASWKLD-EKNSDCCLWDGVKCNE--------DTGHVVELDLASSCLY 72 (778)
Q Consensus 2 ~c~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~-~~~~~~c~w~~v~c~~--------~~~~v~~L~Ls~~~l~ 72 (778)
++..+|++||++||+++..++. .+.++|..+ ....++|.|.|+.|.. ...+|+.|+|+++.+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~--------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~ 94 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRN--------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCT--------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred ccCchHHHHHHHHHHhccCCch--------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence 3566899999999999865543 257888410 0156899999999952 2356777777776665
Q ss_pred cccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCccccc
Q 047451 73 GSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLK 152 (778)
Q Consensus 73 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~ 152 (778)
.++. .+.++++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+..+++|++|++++|.+.
T Consensus 95 -~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~----- 163 (328)
T 4fcg_A 95 -QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL----- 163 (328)
T ss_dssp -SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-----
T ss_pred -hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-----
Confidence 4444 5666666777777666665 35666666666666666666666 55666666666666666665321
Q ss_pred ccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC
Q 047451 153 LQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP 232 (778)
Q Consensus 153 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 232 (778)
+.+|..+.. . ..+..|.++++|++|++++|+++ .+|..+..+++|++|++++| .+.+..+
T Consensus 164 ---~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N-~l~~l~~ 223 (328)
T 4fcg_A 164 ---TELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS-PLSALGP 223 (328)
T ss_dssp ---CCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS-CCCCCCG
T ss_pred ---cccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC-CCCcCch
Confidence 112222211 0 00001122444444444444444 44444444444444444444 3333222
Q ss_pred CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCC
Q 047451 233 QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQ 312 (778)
Q Consensus 233 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (778)
.+..+++|++|++++|.+.+.+|..+..+++|++|++++ |.+.+.+|..+..+++|+.|++++|++.+.+|..+.++++
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD-CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT-CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC-CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 444455555555555555555555555555666666655 4455555555566666666666666666666666666666
Q ss_pred CCccccccccc
Q 047451 313 LDSLTISDSNF 323 (778)
Q Consensus 313 L~~L~L~~n~l 323 (778)
|+.+++..+.+
T Consensus 303 L~~l~l~~~~~ 313 (328)
T 4fcg_A 303 NCIILVPPHLQ 313 (328)
T ss_dssp TCEEECCGGGS
T ss_pred ceEEeCCHHHH
Confidence 66666655443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.9e-28 Score=259.62 Aligned_cols=293 Identities=19% Similarity=0.191 Sum_probs=210.9
Q ss_pred cccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEE
Q 047451 360 QKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGAL 439 (778)
Q Consensus 360 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 439 (778)
.+++.++++++.++.+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+.++.+. .+..+++|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPG-AFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEE
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEE
Confidence 355666666666666664332 4666666666666644343443 566667777776666665433 34556677777
Q ss_pred EcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccc--cCChhhccccccccEEECCCCcc
Q 047451 440 DLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSG--MLPACLGNFSVQLWVLKLQGNKF 517 (778)
Q Consensus 440 ~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~~~L~~L~Ls~n~l 517 (778)
++++|+++. +|..+.+.+++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..++ +|++|++++|.+
T Consensus 106 ~Ls~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l 183 (330)
T 1xku_A 106 YLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNI 183 (330)
T ss_dssp ECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCC
T ss_pred ECCCCcCCc-cChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCcc
Confidence 777777663 344445677777888888877777788899999999999998863 5677777777 799999999999
Q ss_pred cccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCc
Q 047451 518 HGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPN 594 (778)
Q Consensus 518 ~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 594 (778)
+.. |..+. ++|++|++++|++ .+..+..+++|++|++++|++++..+..+..+++|++|++++|+++.+ |..+
T Consensus 184 ~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l 259 (330)
T 1xku_A 184 TTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGL 259 (330)
T ss_dssp CSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTT
T ss_pred ccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-Chhh
Confidence 854 44333 7899999999988 578889999999999999999998888899999999999999999844 4444
Q ss_pred cccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhh
Q 047451 595 ACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEK 674 (778)
Q Consensus 595 ~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (778)
..+++|++|++++|+++ .+|...|..... . .
T Consensus 260 --~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~-----------~-----------------------------------~ 290 (330)
T 1xku_A 260 --ADHKYIQVVYLHNNNIS-AIGSNDFCPPGY-----------N-----------------------------------T 290 (330)
T ss_dssp --TTCSSCCEEECCSSCCC-CCCTTSSSCSSC-----------C-----------------------------------T
T ss_pred --ccCCCcCEEECCCCcCC-ccChhhcCCccc-----------c-----------------------------------c
Confidence 67899999999999998 566543321100 0 0
Q ss_pred hcccccEEEccCCcccc--cCchhccCCCCCCeecCCCCc
Q 047451 675 LSNLITATILSNNSFVG--EIPTSISNLKGLRTLNLSNNN 712 (778)
Q Consensus 675 ~~~~l~~l~ls~n~l~~--~~p~~~~~l~~l~~l~ls~n~ 712 (778)
....++.+++++|.+.. ..|..|..+..++.+++++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 02467889999998863 567889999999999999985
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=9.4e-32 Score=299.35 Aligned_cols=369 Identities=20% Similarity=0.225 Sum_probs=188.7
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCc----cCchhhhCCCCCCEEECcCCCCCcccccccCCchhH
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSG----QIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLAN 160 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~ 160 (778)
++|++|+|+++.+........+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+++. .+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-------~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV-------GVHC 75 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-------HHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChH-------HHHH
Confidence 4566677777666543223335666677777777776653 2345566666677777776654331 1222
Q ss_pred HhhcCC----CCCEEEccCccCCC----CcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC
Q 047451 161 LAENLT----NLKALDLINVHISS----TVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP 232 (778)
Q Consensus 161 ~~~~l~----~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 232 (778)
....++ +|++|++++|+++. .++..+..+++|++|++++|.+++..+..+...
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------------- 136 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG------------------- 136 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-------------------
T ss_pred HHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-------------------
Confidence 223333 46666666665553 234455555555555555555442212111100
Q ss_pred CCCCCCCCCEEeccCCcCCccC----cccccCCCCCCeEeccCCCCCcccCCcccc-----CCCCCCeecccccccCCc-
Q 047451 233 QFQKSSPLEDLRLSYTRFSGKI----PSSLGNLTKLEDLYLSGGNGFSNELPPSIG-----NLASLKTLEISSFNFSGT- 302 (778)
Q Consensus 233 ~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~- 302 (778)
.....++|++|++++|.+++.. +..+..+++|++|++++ |.+++..+..+. ..++|++|++++|.+++.
T Consensus 137 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN-NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS-SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC-CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 0112345666666666666432 44455567777777776 555543333332 234666666666666543
Q ss_pred ---hhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCC-----
Q 047451 303 ---LQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSE----- 374 (778)
Q Consensus 303 ---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~----- 374 (778)
++..+..+++|++|++++|.+.+.... .+. .......++|++|++++|.++.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~---~l~-----------------~~~~~~~~~L~~L~L~~n~l~~~~~~~ 275 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMA---ELC-----------------PGLLHPSSRLRTLWIWECGITAKGCGD 275 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHH---HHH-----------------HHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHH---HHH-----------------HHHhcCCCCceEEECcCCCCCHHHHHH
Confidence 344444455555555555544322110 000 0000122334444444444442
Q ss_pred CCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchh
Q 047451 375 FPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPI 454 (778)
Q Consensus 375 lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 454 (778)
++..+..+++|++|++++|.+.+..+..+.. .+ ....++|+.|++++|.+++....
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l---------------------~~~~~~L~~L~L~~n~l~~~~~~-- 331 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCE-TL---------------------LEPGCQLESLWVKSCSFTAACCS-- 331 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHH-HH---------------------TSTTCCCCEEECTTSCCBGGGHH--
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHH-Hh---------------------ccCCccceeeEcCCCCCchHHHH--
Confidence 4445555666777777777664332222220 00 01124666666666665421110
Q ss_pred hcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhcc-----ccccccEEECCCCcccc----cCcccc
Q 047451 455 SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGN-----FSVQLWVLKLQGNKFHG----FIPETF 525 (778)
Q Consensus 455 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----~~~~L~~L~Ls~n~l~~----~~~~~~ 525 (778)
.++..+..+++|++|++++|++++..+..+.. .+ +|++|++++|.+++ .++..+
T Consensus 332 ----------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 332 ----------------HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp ----------------HHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC-ceEEEECCCCCCChhhHHHHHHHH
Confidence 23456667778888888888777544444432 23 57777777777764 445555
Q ss_pred cCCCCccEEECCCCcc
Q 047451 526 NKGTNLRMIDFSNNLL 541 (778)
Q Consensus 526 ~~l~~L~~L~L~~N~l 541 (778)
..+++|++|++++|++
T Consensus 395 ~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 395 LANHSLRELDLSNNCL 410 (461)
T ss_dssp HHCCCCCEEECCSSSC
T ss_pred HhCCCccEEECCCCCC
Confidence 5566666666666665
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.7e-28 Score=260.24 Aligned_cols=292 Identities=20% Similarity=0.244 Sum_probs=203.2
Q ss_pred cccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEE
Q 047451 360 QKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGAL 439 (778)
Q Consensus 360 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 439 (778)
..++.++++++.++.+|..+ .++++.|++++|.+.+..+..+. .+++|++|++++|.++.+.+. .+..+++|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEK-AFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGG-GSTTCTTCCEE
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHh-HhhCcCCCCEE
Confidence 34556666666666665433 24566666666666543344443 566666666666666655332 34555666677
Q ss_pred EcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccc--cCChhhccccccccEEECCCCcc
Q 047451 440 DLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSG--MLPACLGNFSVQLWVLKLQGNKF 517 (778)
Q Consensus 440 ~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~~~L~~L~Ls~n~l 517 (778)
++++|+++. +|..+.+++++|++++|.+++..+..|..+++|++|++++|.++. ..+..+..+ +|++|++++|.+
T Consensus 108 ~L~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l 184 (332)
T 2ft3_A 108 YISKNHLVE-IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKL 184 (332)
T ss_dssp ECCSSCCCS-CCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBC
T ss_pred ECCCCcCCc-cCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCC
Confidence 776666663 333334667777777777776666678888899999999998853 556666655 588999999988
Q ss_pred cccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCc
Q 047451 518 HGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPN 594 (778)
Q Consensus 518 ~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 594 (778)
++ +|..+. ++|++|++++|.+ .+..+..+++|++|++++|++++..+.+|..+++|++|++++|+++.+ |..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-Chhh
Confidence 86 444433 6888899999988 456788899999999999999998888899999999999999999844 4444
Q ss_pred cccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhh
Q 047451 595 ACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEK 674 (778)
Q Consensus 595 ~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (778)
..+++|++|++++|+++ .+|...|.... . ..
T Consensus 261 --~~l~~L~~L~l~~N~l~-~~~~~~~~~~~------------~----------------------------------~~ 291 (332)
T 2ft3_A 261 --PDLKLLQVVYLHTNNIT-KVGVNDFCPVG------------F----------------------------------GV 291 (332)
T ss_dssp --GGCTTCCEEECCSSCCC-BCCTTSSSCSS------------C----------------------------------CS
T ss_pred --hcCccCCEEECCCCCCC-ccChhHccccc------------c----------------------------------cc
Confidence 78899999999999998 56644332210 0 00
Q ss_pred hcccccEEEccCCccc--ccCchhccCCCCCCeecCCCCc
Q 047451 675 LSNLITATILSNNSFV--GEIPTSISNLKGLRTLNLSNNN 712 (778)
Q Consensus 675 ~~~~l~~l~ls~n~l~--~~~p~~~~~l~~l~~l~ls~n~ 712 (778)
....++.+++++|.+. +..|..|..+++|+.+++++|+
T Consensus 292 ~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0246888999999887 6788889999999999999985
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.7e-32 Score=302.63 Aligned_cols=399 Identities=19% Similarity=0.168 Sum_probs=224.4
Q ss_pred CCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCC----CcchhhcCCCCCCEEEcccCcCCCCCChh
Q 047451 134 SNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISS----TVPHTLANLSSLHFLSLSGCRLQGEFPQE 209 (778)
Q Consensus 134 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 209 (778)
++|++||+++|.+++. .....+..+++|++|++++|+++. .++..+..+++|++|++++|.+++..+..
T Consensus 3 ~~l~~L~Ls~~~l~~~-------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA-------RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCCCCHH-------HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred ccceehhhhhcccCch-------hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 4677888888866443 234446677788888888877764 23555666777777777777765432322
Q ss_pred hc-CCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCc----cCcccccCCCCCCeEeccCCCCCcccCCcccc
Q 047451 210 IF-QLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSG----KIPSSLGNLTKLEDLYLSGGNGFSNELPPSIG 284 (778)
Q Consensus 210 l~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~ 284 (778)
+. .++. ..++|++|++++|.+++ .++..+..+++|++|++++ |.+++..+..+.
T Consensus 76 l~~~l~~--------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~ 134 (461)
T 1z7x_W 76 VLQGLQT--------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLC 134 (461)
T ss_dssp HHHTTCS--------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHH
T ss_pred HHHHHhh--------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHH
Confidence 22 2220 00135555555555542 2345555556666666655 444433222221
Q ss_pred -----CCCCCCeecccccccCCch----hhhccCCCCCCcccccccccCCCCCcchh-hh-cCCCCCcEEecCCCCCCcC
Q 047451 285 -----NLASLKTLEISSFNFSGTL----QASLGNLTQLDSLTISDSNFSGPMSSSLS-WL-TNLNQLTSLNFPNCNLNEP 353 (778)
Q Consensus 285 -----~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l-~~l~~L~~L~l~~n~l~~~ 353 (778)
..++|++|++++|.+++.. +..+..+++|++|++++|.+.+.....+. .+ ...++|++|++++|.+.+.
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 1345666666666555432 33344445555555555554322111000 00 0122333333333333221
Q ss_pred CCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCC
Q 047451 354 LLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPW 433 (778)
Q Consensus 354 ~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 433 (778)
. ...++..+..+++|++|++++|.+.+.....+.. ..+..+
T Consensus 215 ~-----------------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~----------------------~~~~~~ 255 (461)
T 1z7x_W 215 N-----------------CRDLCGIVASKASLRELALGSNKLGDVGMAELCP----------------------GLLHPS 255 (461)
T ss_dssp H-----------------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH----------------------HHTSTT
T ss_pred H-----------------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH----------------------HHhcCC
Confidence 0 0013344555566666666666554221111110 001123
Q ss_pred CCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccc----cccccE
Q 047451 434 NNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNF----SVQLWV 509 (778)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----~~~L~~ 509 (778)
++|++|++++|.+++... ..++..+..+++|++|++++|.+++..+..+... ..+|++
T Consensus 256 ~~L~~L~L~~n~l~~~~~------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGC------------------GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp CCCCEEECTTSCCCHHHH------------------HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCceEEECcCCCCCHHHH------------------HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 566666666666552100 0145566778888888888888765444444332 126899
Q ss_pred EECCCCccccc----CcccccCCCCccEEECCCCcc---Chhhhh----C-CCCCCEEeCCCCcCCC----CCcccccCC
Q 047451 510 LKLQGNKFHGF----IPETFNKGTNLRMIDFSNNLL---VPKSLA----N-CVKLKFLDLGDNQITD----FFPSWLGTL 573 (778)
Q Consensus 510 L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l---~~~~l~----~-l~~L~~L~Ls~N~l~~----~~~~~~~~l 573 (778)
|++++|.+++. ++..+..+++|++|++++|.+ .+..+. . .++|++|++++|++++ .+|..+..+
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 99999988765 455667788999999999988 233332 2 6799999999999986 667788889
Q ss_pred CCCCEEEccCccccccCCCCcc---ccccCcCcEEEcCCCcCCCCCC
Q 047451 574 PELEVLILKSNNFHGVIEEPNA---CFEFVKLRIIDLSHNRFAGNLP 617 (778)
Q Consensus 574 ~~L~~L~Ls~N~l~~~~~~~~~---~~~l~~L~~L~ls~N~l~~~ip 617 (778)
++|++|++++|++++.....+. .....+|+.|++.++.+....+
T Consensus 398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 9999999999998754211110 0123468999999988875443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=7.4e-28 Score=255.04 Aligned_cols=288 Identities=20% Similarity=0.250 Sum_probs=144.1
Q ss_pred CCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcE
Q 047451 263 KLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTS 342 (778)
Q Consensus 263 ~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~ 342 (778)
+++.+++++ +.++. +|..+. +.++.|++++|.+++..+..|.++++|++|++++|.+++..|. .+..+++|++
T Consensus 32 ~l~~l~~~~-~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSD-LGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG---AFAPLVKLER 104 (330)
T ss_dssp ETTEEECTT-SCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT---TTTTCTTCCE
T ss_pred CCeEEEecC-CCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH---HhcCCCCCCE
Confidence 566777765 55543 343332 4677777777777766665667777777777777776666555 4555566666
Q ss_pred EecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccc
Q 047451 343 LNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLM 422 (778)
Q Consensus 343 L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 422 (778)
|++++|.+. .+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 L~Ls~n~l~----------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 105 LYLSKNQLK----------------------ELPEKMP--KTLQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLK 158 (330)
T ss_dssp EECCSSCCS----------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCC
T ss_pred EECCCCcCC----------------------ccChhhc--ccccEEECCCCcccccCHhHhc--CCccccEEECCCCcCC
Confidence 666555544 2332221 4555566666555533333332 4444444444444332
Q ss_pred cccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhcc
Q 047451 423 HFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGN 502 (778)
Q Consensus 423 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (778)
.. +..+..+..+++|++|++++|+++ .+|..+.
T Consensus 159 ~~---------------------------------------------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~- 191 (330)
T 1xku_A 159 SS---------------------------------------------GIENGAFQGMKKLSYIRIADTNIT-TIPQGLP- 191 (330)
T ss_dssp GG---------------------------------------------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC-
T ss_pred cc---------------------------------------------CcChhhccCCCCcCEEECCCCccc-cCCcccc-
Confidence 21 012233444444444444444444 2333222
Q ss_pred ccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEE
Q 047451 503 FSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVL 579 (778)
Q Consensus 503 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 579 (778)
+ +|++|++++|.+++..+..|..+++|++|++++|.+ .+..+..+++|++|++++|+++. +|.++..+++|++|
T Consensus 192 -~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L 268 (330)
T 1xku_A 192 -P-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268 (330)
T ss_dssp -T-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEE
T ss_pred -c-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEE
Confidence 2 455555555555544444555555555555555554 23344555555555555555543 34445555555555
Q ss_pred EccCccccccCCCCccc----cccCcCcEEEcCCCcCCC-CCChHHHhccccccccccC
Q 047451 580 ILKSNNFHGVIEEPNAC----FEFVKLRIIDLSHNRFAG-NLPSKHFECWNAMKDVNAN 633 (778)
Q Consensus 580 ~Ls~N~l~~~~~~~~~~----~~l~~L~~L~ls~N~l~~-~ip~~~~~~~~~l~~l~~~ 633 (778)
++++|+++++.+..+.. ...+.|+.+++++|++.. .++...|.++..++.++++
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 55555555444333310 012455556666665542 2444445555555555544
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5e-29 Score=261.39 Aligned_cols=246 Identities=25% Similarity=0.319 Sum_probs=175.4
Q ss_pred cccceeeccccCCC---CCCchhcccccccEEeccC-CcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCC
Q 047451 360 QKFEIIGLRSCNLS---EFPSFLHNQDQLISLDLSS-NMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNN 435 (778)
Q Consensus 360 ~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 435 (778)
.+++.|++++|.+. .+|..+..+++|++|++++ |.+.+.+|..+. .+++|++|++++|.+++..+. .+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPD-FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCG-GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCH-HHhCCCC
Confidence 45677777777776 4777788888888888884 888878887776 778888888888887754443 3556678
Q ss_pred CCEEEcCCCcCcCCCCchh--hcccceeEecCCccccCCchhhhcCC-cccccccccccccccCChhhccccccccEEEC
Q 047451 436 LGALDLRFNKLQGPLPIPI--SVLTSSYLVSNNQLTGEIPPSICSLN-GLYALDLSYNNLSGMLPACLGNFSVQLWVLKL 512 (778)
Q Consensus 436 L~~L~L~~n~l~~~~~~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 512 (778)
|++|++++|.+++..|..+ .++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..+. |++|++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~L 204 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDL 204 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEEC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEEC
Confidence 8888888887777666555 56677777777777766777777776 777777777777766776666654 777777
Q ss_pred CCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccC
Q 047451 513 QGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVI 590 (778)
Q Consensus 513 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 590 (778)
++|.+++..|..|..+++|+.|++++|++ .+..+..+++|++|++++|++++..|.+|..+++|++|++++|++++.+
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 77777777777777777777777777776 3344666777777777777777666777777777777777777777666
Q ss_pred CCCccccccCcCcEEEcCCCcCC
Q 047451 591 EEPNACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 591 ~~~~~~~~l~~L~~L~ls~N~l~ 613 (778)
|.. ..+++|+.+++++|+..
T Consensus 285 p~~---~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 285 PQG---GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCS---TTGGGSCGGGTCSSSEE
T ss_pred CCC---ccccccChHHhcCCCCc
Confidence 554 45667777777777743
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9e-28 Score=254.55 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=43.1
Q ss_pred CCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcE
Q 047451 263 KLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTS 342 (778)
Q Consensus 263 ~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~ 342 (778)
+++.+++++ +.++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.+++..+. .+..+++|++
T Consensus 34 ~l~~l~~~~-~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSD-LGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK---AFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCS-SCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG---GSTTCTTCCE
T ss_pred cCCEEECCC-CCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh---HhhCcCCCCE
Confidence 456666665 4444 2333332 4566666666666555555555666666666666655554444 3444455555
Q ss_pred EecCCCCCC
Q 047451 343 LNFPNCNLN 351 (778)
Q Consensus 343 L~l~~n~l~ 351 (778)
|++++|.+.
T Consensus 107 L~L~~n~l~ 115 (332)
T 2ft3_A 107 LYISKNHLV 115 (332)
T ss_dssp EECCSSCCC
T ss_pred EECCCCcCC
Confidence 555444443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.4e-29 Score=287.97 Aligned_cols=435 Identities=17% Similarity=0.137 Sum_probs=220.7
Q ss_pred CchhhhCCCCCCEEECcCCCCCc-ccc---cc---cCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCC-C-CCCEEE
Q 047451 126 IPAELLELSNLEVLDLSFNTFDN-FFL---KL---QKPGLANLAENLTNLKALDLINVHISSTVPHTLANL-S-SLHFLS 196 (778)
Q Consensus 126 ~p~~l~~l~~L~~L~Ls~n~i~~-~~~---~~---~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~-~L~~L~ 196 (778)
.+..+..+++|++|+++++.... ... .. ....++.....+++|++|++++|.+++..+..+... + +|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 34456678888888888763210 000 00 000122223355666666666665554444444432 2 255555
Q ss_pred cccCcC-CC-CCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCcc----CcccccCCCCCCeEecc
Q 047451 197 LSGCRL-QG-EFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGK----IPSSLGNLTKLEDLYLS 270 (778)
Q Consensus 197 Ls~n~l-~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~ 270 (778)
+++|.. +. .++.....+++|++| ++++|.+++. ++..+..+++|++|+++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L------------------------~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~ 200 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTL------------------------LMEESSFSEKDGKWLHELAQHNTSLEVLNFY 200 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEE------------------------ECTTCEEECCCSHHHHHHHHHCCCCCEEECT
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEE------------------------ECccccccCcchhHHHHHHhcCCCccEEEee
Confidence 555541 10 011111234444444 4444443322 22223345555555555
Q ss_pred CCCCCc----ccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecC
Q 047451 271 GGNGFS----NELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFP 346 (778)
Q Consensus 271 ~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 346 (778)
+ +.++ +.++..+..+++|+.|++++|.+.+ ++..+..+++|++|+++..............+..+++|+.|++
T Consensus 201 ~-n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l- 277 (592)
T 3ogk_B 201 M-TEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL- 277 (592)
T ss_dssp T-CCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEE-
T ss_pred c-cCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCc-
Confidence 4 4443 1222233445556666666555543 3445555556666655542211111111112333344444444
Q ss_pred CCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccC
Q 047451 347 NCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEH 426 (778)
Q Consensus 347 ~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 426 (778)
+++....+|..+..+++|++|++++|.+++.....+. ..+++|++|+++ +.+.+...
T Consensus 278 ---------------------~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~-~~~~~L~~L~L~-~~~~~~~l 334 (592)
T 3ogk_B 278 ---------------------SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI-QKCPNLEVLETR-NVIGDRGL 334 (592)
T ss_dssp ---------------------TTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH-TTCTTCCEEEEE-GGGHHHHH
T ss_pred ---------------------cccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH-HhCcCCCEEecc-CccCHHHH
Confidence 3333334444445555555555555554322111111 245555555555 22222111
Q ss_pred CCCCCCCCCCCEEEcCC-----------CcCcCCCCchh---hcccceeEecCCccccCCchhhhc-CCcccccccc---
Q 047451 427 NLPVLPWNNLGALDLRF-----------NKLQGPLPIPI---SVLTSSYLVSNNQLTGEIPPSICS-LNGLYALDLS--- 488 (778)
Q Consensus 427 ~~~~~~~~~L~~L~L~~-----------n~l~~~~~~~~---~~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls--- 488 (778)
......+++|++|++++ |.+++.....+ +++|++|+++.|.+++..+..+.. +++|++|+++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 11112235566666662 33332211111 456777777777776665556654 7888888886
Q ss_pred -ccccccc-----CChhhccccccccEEECCCCc--ccccCcccc-cCCCCccEEECCCCcc----ChhhhhCCCCCCEE
Q 047451 489 -YNNLSGM-----LPACLGNFSVQLWVLKLQGNK--FHGFIPETF-NKGTNLRMIDFSNNLL----VPKSLANCVKLKFL 555 (778)
Q Consensus 489 -~N~l~~~-----~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~-~~l~~L~~L~L~~N~l----~~~~l~~l~~L~~L 555 (778)
.|.+++. ++..+..++ +|++|++++|. +++..+..+ ..+++|++|++++|++ .+..+.++++|++|
T Consensus 415 ~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 415 REERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 5566642 223344555 68888887544 554433333 3478888888888888 34556788899999
Q ss_pred eCCCCcCCCCC-cccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcC
Q 047451 556 DLGDNQITDFF-PSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRF 612 (778)
Q Consensus 556 ~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 612 (778)
++++|.+++.. +.....+++|++|++++|+++......+. ..++.+....+..++-
T Consensus 494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~-~~~p~l~~~~~~~~~~ 550 (592)
T 3ogk_B 494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ-MARPYWNIELIPSRRV 550 (592)
T ss_dssp EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG-GCCTTEEEEEECCC--
T ss_pred eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH-HhCCCcEEEEecCccc
Confidence 99999886543 33445788999999999998755322222 4567777666665533
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.2e-26 Score=240.96 Aligned_cols=253 Identities=27% Similarity=0.374 Sum_probs=192.8
Q ss_pred EEecCCCCCCcCCCCCCCcccceeeccccCCCCCCc-hhcccccccEEeccCCcCCCC--CchhHHhcCCCCccEEeccC
Q 047451 342 SLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPS-FLHNQDQLISLDLSSNMIAGK--IPEWLFSAGTNSLQYLNLSY 418 (778)
Q Consensus 342 ~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~~~L~~L~Ls~ 418 (778)
.++.+++.++. +|....+++++|++++|.++.+|. .+..+++|++|++++|.++.. .+..+. .+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--GTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH--SCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc--cccccCEEECCC
Confidence 34444444433 222234566777777777776664 356777777777777777522 244444 667777777777
Q ss_pred CccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCc-hhhhcCCcccccccccccccccCC
Q 047451 419 NLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIP-PSICSLNGLYALDLSYNNLSGMLP 497 (778)
Q Consensus 419 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 497 (778)
|.+..++.. +..+++|++|++++|.+++ ..+ ..+..+++|++|++++|.+.+..+
T Consensus 88 n~i~~l~~~--~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 88 NGVITMSSN--FLGLEQLEHLDFQHSNLKQ----------------------MSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp CSEEEEEEE--EETCTTCCEEECTTSEEES----------------------STTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred CccccChhh--cCCCCCCCEEECCCCcccc----------------------cccchhhhhccCCCEEECCCCcCCccch
Confidence 776655442 3445666666666666553 322 467788999999999999988888
Q ss_pred hhhccccccccEEECCCCcccc-cCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCC
Q 047451 498 ACLGNFSVQLWVLKLQGNKFHG-FIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTL 573 (778)
Q Consensus 498 ~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 573 (778)
..+..++ +|++|++++|.+++ ..|..+..+++|++|++++|++ .|..+..+++|++|++++|++++..+..+..+
T Consensus 144 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 144 GIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhcccCc-CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 8888887 79999999999986 6788899999999999999998 57889999999999999999999988889999
Q ss_pred CCCCEEEccCccccccCCCCcccccc-CcCcEEEcCCCcCCCCCChHHHhcc
Q 047451 574 PELEVLILKSNNFHGVIEEPNACFEF-VKLRIIDLSHNRFAGNLPSKHFECW 624 (778)
Q Consensus 574 ~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~ls~N~l~~~ip~~~~~~~ 624 (778)
++|++|++++|++++..+..+ ..+ ++|++|++++|+++|.++..+|..|
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSC--CCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred ccCCEeECCCCCCcccCHHHH--HhhhccCCEEEccCCCeecccChHHHHHH
Confidence 999999999999999887766 566 4999999999999999887777665
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.2e-26 Score=250.12 Aligned_cols=253 Identities=19% Similarity=0.140 Sum_probs=198.0
Q ss_pred ceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcC
Q 047451 363 EIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLR 442 (778)
Q Consensus 363 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 442 (778)
..++.++..++.+|..+. +++++|++++|++++..+..+. .+++|++|++++|.+..+.+. .+..+++|++|+++
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChh-hccCcccCCEEECC
Confidence 455566666666665432 4667777777776655455554 667777777777776666543 35566777777777
Q ss_pred CCcCcCCCCchh--hcccceeEecCCccccCCchhhhcCCcccccccccccccccCC-hhhccccccccEEECCCCcccc
Q 047451 443 FNKLQGPLPIPI--SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP-ACLGNFSVQLWVLKLQGNKFHG 519 (778)
Q Consensus 443 ~n~l~~~~~~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~ 519 (778)
+|++++..+..+ .++|++|++++|.+++..+..|.++++|++|++++|+..+.++ ..+..+. +|++|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCcccc
Confidence 777776555444 5677777777777776667789999999999999954433444 4577777 79999999999996
Q ss_pred cCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccc
Q 047451 520 FIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596 (778)
Q Consensus 520 ~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 596 (778)
. | .+..+++|++|+|++|++ .|..|.++++|+.|++++|++++..+..|.++++|+.|+|++|++++..+..+
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 286 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF-- 286 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS--
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh--
Confidence 5 3 588999999999999999 68899999999999999999999999999999999999999999998876665
Q ss_pred cccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 597 FEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 597 ~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
..+++|+.|++++|++.|.+...||..|-
T Consensus 287 ~~l~~L~~L~L~~Np~~CdC~~~~l~~~l 315 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWNCDCDILWLAWWL 315 (452)
T ss_dssp TTCTTCCEEECCSSCEECSTTTHHHHHHH
T ss_pred ccccCCCEEEccCCCcCCCCCchHHHHHH
Confidence 78999999999999999999988887664
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=244.80 Aligned_cols=280 Identities=18% Similarity=0.229 Sum_probs=208.8
Q ss_pred CCCCCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCC
Q 047451 43 NSDCCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYF 122 (778)
Q Consensus 43 ~~~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 122 (778)
....|.|.++ |+ ++++.++ .+|. .+. ++|++|++++|.+... .+..+.++++|++|++++|.+
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLN-SIPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCS-SCCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCCeE-ee----------CCCCCcc-cccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence 4567889876 54 3444444 2332 232 5899999999998653 344789999999999999999
Q ss_pred CccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcc-hhhcCCCCCCEEEcccC-
Q 047451 123 SGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLHFLSLSGC- 200 (778)
Q Consensus 123 ~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n- 200 (778)
++..|..|.++++|++|++++|.|+.+ .+..+.++++|++|++++|+++...+ ..+..+++|++|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNL--------SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSC--------CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcC--------CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 987788899999999999999976432 33458889999999999999886555 57888999999999998
Q ss_pred cCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccC
Q 047451 201 RLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNEL 279 (778)
Q Consensus 201 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~ 279 (778)
.+....+..+..+++|++|++++| .+.+..+ .+..+++|++|++++|.++......+..+++|++|++++ |.+++..
T Consensus 161 ~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~ 238 (353)
T 2z80_A 161 TFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD-TDLDTFH 238 (353)
T ss_dssp SCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES-CBCTTCC
T ss_pred cccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC-Ccccccc
Confidence 466566778888999999999998 5555544 788888999999999988754444455688899999988 7777655
Q ss_pred Ccccc---CCCCCCeecccccccCC----chhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCc
Q 047451 280 PPSIG---NLASLKTLEISSFNFSG----TLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNE 352 (778)
Q Consensus 280 ~~~l~---~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 352 (778)
+..+. ..+.++.++++++.+.+ .+|..+..+++|++|++++|+++...+. .+..+++|++|++++|.+..
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~---~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG---IFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH---HHhcCCCCCEEEeeCCCccC
Confidence 54433 34567777777777664 3566778888888888888888754433 35677788888888877654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8e-26 Score=249.28 Aligned_cols=253 Identities=21% Similarity=0.168 Sum_probs=187.7
Q ss_pred ceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcC
Q 047451 363 EIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLR 442 (778)
Q Consensus 363 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 442 (778)
..++..+..++.+|..+. ++++.|++++|++.+..+..+. .+++|++|++++|.+..+... .+..+++|++|+++
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIG-AFNGLANLNTLELF 120 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGG-GGTTCSSCCEEECC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChh-hccCCccCCEEECC
Confidence 345555555555554332 4555566666655543334433 555666666666655554432 34445666666666
Q ss_pred CCcCcCCCCchh--hcccceeEecCCccccCCchhhhcCCcccccccccccccccCC-hhhccccccccEEECCCCcccc
Q 047451 443 FNKLQGPLPIPI--SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP-ACLGNFSVQLWVLKLQGNKFHG 519 (778)
Q Consensus 443 ~n~l~~~~~~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~ 519 (778)
+|++++..+..+ .++|++|++++|.++...+..|..+++|++|++++|+..+.++ ..+..++ +|++|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCcc
Confidence 666665544333 5566666666666666666788899999999999954443444 4677777 79999999999985
Q ss_pred cCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccc
Q 047451 520 FIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596 (778)
Q Consensus 520 ~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 596 (778)
. | .+..+++|++|+|++|++ .|..|.++++|+.|+|++|+++++.+..|.++++|+.|+|++|++++..+..+
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-- 275 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF-- 275 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT--
T ss_pred c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh--
Confidence 4 4 588899999999999999 68899999999999999999999999999999999999999999998876665
Q ss_pred cccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 597 FEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 597 ~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
..+++|+.|++++|++.|.+...||..|-
T Consensus 276 ~~l~~L~~L~L~~Np~~CdC~l~~l~~~~ 304 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWNCNCDILWLSWWI 304 (440)
T ss_dssp SSCTTCCEEECCSSCEECSSTTHHHHHHH
T ss_pred ccccCCCEEEcCCCCccCCCCchHHHHHH
Confidence 78999999999999999999988887764
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.1e-26 Score=239.88 Aligned_cols=280 Identities=20% Similarity=0.264 Sum_probs=203.5
Q ss_pred CCCCCCCCCCCCCCCccCceeeCCCCCcEEEEEcCCCCCccccC----CccccccCCCCCEEeCCCCCCCCCCCchhhcC
Q 047451 33 KVASWKLDEKNSDCCLWDGVKCNEDTGHVVELDLASSCLYGSVN----STSSLFQLVHLQRLSLFDNNFNFSEIPSEILN 108 (778)
Q Consensus 33 ~~~~W~~~~~~~~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 108 (778)
++.+|+.. -..++|.|.+..|...... -..+.+.|... ........+++++|+|++|.+. .+|..+++
T Consensus 31 aLl~~k~~-~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~ 102 (328)
T 4fcg_A 31 VLSQWQRH-YNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFR 102 (328)
T ss_dssp HHHHHHHH-HHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS--SCCSCGGG
T ss_pred HHHHHHHh-ccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch--hcChhhhh
Confidence 45566641 0146899988887322110 11122322211 0001123467788888887775 36777777
Q ss_pred CCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcC
Q 047451 109 FSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLAN 188 (778)
Q Consensus 109 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 188 (778)
+++|++|+|++|.+. .+|..++.+++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~---------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR---------ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC---------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc---------cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 778888888888777 67777777777777777777542 23445555556666666555555544443322
Q ss_pred CCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEe
Q 047451 189 LSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLY 268 (778)
Q Consensus 189 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 268 (778)
. ..+..+..+++|++|++++| .++.....+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 173 ~---------------~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 173 T---------------DASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp E---------------C-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred c---------------cchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 0 11233556999999999999 666333478999999999999999995 666799999999999
Q ss_pred ccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCC
Q 047451 269 LSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNC 348 (778)
Q Consensus 269 L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n 348 (778)
+++ |.+.+.+|..++.+++|+.|++++|.+.+.+|..+.++++|++|++++|.+.+..|. .+..+++|+.+++..+
T Consensus 236 Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~---~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 236 LRG-CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS---LIAQLPANCIILVPPH 311 (328)
T ss_dssp CTT-CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG---GGGGSCTTCEEECCGG
T ss_pred CcC-CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH---HHhhccCceEEeCCHH
Confidence 998 888889999999999999999999999999999999999999999999999999998 8889999999999877
Q ss_pred CCC
Q 047451 349 NLN 351 (778)
Q Consensus 349 ~l~ 351 (778)
.+.
T Consensus 312 ~~~ 314 (328)
T 4fcg_A 312 LQA 314 (328)
T ss_dssp GSC
T ss_pred HHH
Confidence 554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8e-26 Score=234.06 Aligned_cols=232 Identities=21% Similarity=0.204 Sum_probs=167.3
Q ss_pred ceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcC
Q 047451 363 EIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLR 442 (778)
Q Consensus 363 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 442 (778)
+.++++++.++.+|..+ .++|++|++++|.+++..+..+. .+++|++|++++|.++++.+. .+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCC
Confidence 45677777777777533 45777777777777644334443 566666666666666655432 34445556666655
Q ss_pred CCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCc
Q 047451 443 FNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIP 522 (778)
Q Consensus 443 ~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 522 (778)
+|.. ++...+..+..+++|++|++++|++++..+..+..++ +|++|++++|.+++..+
T Consensus 89 ~n~~---------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 89 DNAQ---------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPD 146 (285)
T ss_dssp SCTT---------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCT
T ss_pred CCCC---------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCH
Confidence 5541 3334456677888888888888888876677777777 68888888888887777
Q ss_pred ccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCcccccc
Q 047451 523 ETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEF 599 (778)
Q Consensus 523 ~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 599 (778)
..|..+++|++|++++|++ .+..+..+++|++|++++|++++..|.+|..+++|+.|++++|++++..+..+ ..+
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l 224 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APL 224 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHH--TTC
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHc--ccC
Confidence 7788888888888888888 34457888888888888888888888888888888888888888887654333 678
Q ss_pred CcCcEEEcCCCcCCCCCChHHHhc
Q 047451 600 VKLRIIDLSHNRFAGNLPSKHFEC 623 (778)
Q Consensus 600 ~~L~~L~ls~N~l~~~ip~~~~~~ 623 (778)
++|++|++++|+++|.++..++..
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp TTCCEEECCSSCEECSGGGHHHHH
T ss_pred cccCEEeccCCCccCCCCcHHHHH
Confidence 888888888888888877655443
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2.3e-28 Score=281.06 Aligned_cols=419 Identities=15% Similarity=0.092 Sum_probs=251.4
Q ss_pred ccccCCCCCEEeCCCCCCCC--CCCch------------hhcCCCCCCEEECCCCCCCccCchhhhCC-C-CCCEEECcC
Q 047451 80 SLFQLVHLQRLSLFDNNFNF--SEIPS------------EILNFSRLTHLNLSRSYFSGQIPAELLEL-S-NLEVLDLSF 143 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~--~~~~~------------~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~-~L~~L~Ls~ 143 (778)
.+.++++|++|+|+++.... ..+|. ....+++|++|+|++|.+++..+..+... + +|++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 56678899999998754210 00221 22378899999999998887766666663 3 499999998
Q ss_pred CCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCC----cchhhcCCCCCCEEEcccCcCCC----CCChhhcCCCC
Q 047451 144 NTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLHFLSLSGCRLQG----EFPQEIFQLPN 215 (778)
Q Consensus 144 n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~ 215 (778)
|.- + ....++....++++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++
T Consensus 148 ~~~----~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 148 CSG----F--TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp CEE----E--EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred CCC----c--CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 841 1 1134555667889999999999987665 44456678899999999988873 23444567888
Q ss_pred CCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCC---ccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCee
Q 047451 216 LQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFS---GKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTL 292 (778)
Q Consensus 216 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L 292 (778)
|++|++++| ...+....+..+++|++|+++..... ...+..+..+++|+.|++++ . ....+|..+..+++|++|
T Consensus 222 L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 222 LVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-M-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp CCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT-C-CTTTGGGGGGGGGGCCEE
T ss_pred CcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc-c-chhHHHHHHhhcCCCcEE
Confidence 888888887 44443346677788888888754322 23345566778888888875 2 334456667778888888
Q ss_pred cccccccCCchh-hhccCCCCCCcccccccccCCC-CCcchhhhcCCCCCcEEecCC-----------CCCCcCCC---C
Q 047451 293 EISSFNFSGTLQ-ASLGNLTQLDSLTISDSNFSGP-MSSSLSWLTNLNQLTSLNFPN-----------CNLNEPLL---V 356 (778)
Q Consensus 293 ~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~---~ 356 (778)
++++|.+++... ..+..+++|++|+++++ +... .+. ....+++|++|++++ +.+++... .
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~---~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEV---LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH---HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHH---HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 888888654433 34577888888888733 3221 111 234567788888873 23332111 1
Q ss_pred CCCcccceeeccccCCCC-CCchhc-ccccccEEecc----CCcCCCC-----CchhHHhcCCCCccEEeccCCcccccc
Q 047451 357 PNTQKFEIIGLRSCNLSE-FPSFLH-NQDQLISLDLS----SNMIAGK-----IPEWLFSAGTNSLQYLNLSYNLLMHFE 425 (778)
Q Consensus 357 ~~~~~L~~L~L~~n~l~~-lp~~l~-~l~~L~~L~Ls----~n~l~~~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 425 (778)
..+++|++|+++.+.++. .+..+. .+++|++|+++ .|.+++. ++..+. ++
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~--~~----------------- 435 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI--GC----------------- 435 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH--HC-----------------
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH--hC-----------------
Confidence 124445555554444441 111222 24445555553 3333321 111111 34
Q ss_pred CCCCCCCCCCCCEEEcCCCc--CcCCCCchh---hcccceeEecCCcccc-CCchhhhcCCcccccccccccccccCCh-
Q 047451 426 HNLPVLPWNNLGALDLRFNK--LQGPLPIPI---SVLTSSYLVSNNQLTG-EIPPSICSLNGLYALDLSYNNLSGMLPA- 498 (778)
Q Consensus 426 ~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~---~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 498 (778)
++|+.|++++|. +++.....+ +++|++|++++|.+++ .++..+..+++|++|++++|.+++....
T Consensus 436 --------~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 436 --------KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp --------TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred --------CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 455555554322 222222111 3445666666666554 2344556788888888888887654333
Q ss_pred hhccccccccEEECCCCcccccCcccc-cCCCCccEEECCCC
Q 047451 499 CLGNFSVQLWVLKLQGNKFHGFIPETF-NKGTNLRMIDFSNN 539 (778)
Q Consensus 499 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N 539 (778)
....++ +|++|++++|+++......+ ..++.+....+..+
T Consensus 508 ~~~~l~-~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 508 AVTKLP-SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHCS-SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcC-ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 334455 78899999988876533333 34566666555544
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-25 Score=235.03 Aligned_cols=249 Identities=24% Similarity=0.323 Sum_probs=155.8
Q ss_pred CCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCch-hhcCCCCCCEEECCCCCCCc
Q 047451 46 CCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPS-EILNFSRLTHLNLSRSYFSG 124 (778)
Q Consensus 46 ~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~ 124 (778)
.|.|.++.|... .+. .+|. .+ .++|++|+|++|.+.. +|. .|.++++|++|++++|.+..
T Consensus 6 ~C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~ 66 (306)
T 2z66_A 6 SCSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSF 66 (306)
T ss_dssp EEETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCE
T ss_pred eeCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCc
Confidence 378888888643 222 2222 22 2578889998888863 454 46888888888888888873
Q ss_pred c--CchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcc-hhhcCCCCCCEEEcccCc
Q 047451 125 Q--IPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLHFLSLSGCR 201 (778)
Q Consensus 125 ~--~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~ 201 (778)
. .+..+..+++|++|++++|.++ .++..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.
T Consensus 67 ~~~~~~~~~~~~~L~~L~Ls~n~i~---------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 67 KGCCSQSDFGTTSLKYLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp EEEEEHHHHSCSCCCEEECCSCSEE---------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ccCcccccccccccCEEECCCCccc---------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 3 3667777888888888888653 234446677777777777777766554 567777777777777777
Q ss_pred CCCCCChhhcCCCCCCEEecccCCCCcc-cCC-CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccC
Q 047451 202 LQGEFPQEIFQLPNLQFLGVMKNPNLTG-YLP-QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNEL 279 (778)
Q Consensus 202 l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~ 279 (778)
+.+..+..+..+++|++|++++| .+.+ ..+ .+..+++|++|++++|.+++..|..+..+++|++|++++ |.+++..
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~ 215 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLD 215 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCSBCC
T ss_pred CCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-CccCccC
Confidence 76666666666667777766666 3332 222 455556666666666666555555555555555555555 5555444
Q ss_pred CccccCCCCCCeecccccccCCchhhhccCCC-CCCcccccccccC
Q 047451 280 PPSIGNLASLKTLEISSFNFSGTLQASLGNLT-QLDSLTISDSNFS 324 (778)
Q Consensus 280 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~ 324 (778)
+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 44455555555555555555554444444442 4555555555444
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.8e-25 Score=250.77 Aligned_cols=267 Identities=24% Similarity=0.259 Sum_probs=171.3
Q ss_pred CCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccC
Q 047451 339 QLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSY 418 (778)
Q Consensus 339 ~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 418 (778)
+++.|++++|.++. +|....++|+.|++++|.++.+|. .+++|++|++++|+++ .+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCc-cChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEECcC
Confidence 45566666665552 222223455555555555555554 3445555555555554 2332 334444444444
Q ss_pred CccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCCh
Q 047451 419 NLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPA 498 (778)
Q Consensus 419 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (778)
|.++.++. .+.+++.|++++|++++ +|.. +++|++|++++|++++ +|.
T Consensus 111 N~l~~l~~---------------------------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~ 158 (622)
T 3g06_A 111 NPLTHLPA---------------------------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA 158 (622)
T ss_dssp CCCCCCCC---------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC
T ss_pred CcCCCCCC---------------------------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC
Confidence 44444332 23344444444444443 3332 3677778888887773 343
Q ss_pred hhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCC
Q 047451 499 CLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPEL 576 (778)
Q Consensus 499 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 576 (778)
. . .+|+.|++++|.+++. | ..+++|+.|++++|.+ +|.. +++|+.|++++|.++.+. . .+++|
T Consensus 159 ~---~-~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~-~---~~~~L 223 (622)
T 3g06_A 159 L---P-SELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP-A---LPSGL 223 (622)
T ss_dssp C---C-TTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-C---CCTTC
T ss_pred c---c-CCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccC-C---CCCCC
Confidence 2 1 2678888888888753 3 3457788888888877 4432 477888888888887653 2 24678
Q ss_pred CEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCcccccc
Q 047451 577 EVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGF 656 (778)
Q Consensus 577 ~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 656 (778)
++|++++|+++++. ..+++|+.|++++|.++ .+|..
T Consensus 224 ~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~-~lp~~------------------------------------- 259 (622)
T 3g06_A 224 KELIVSGNRLTSLP------VLPSELKELMVSGNRLT-SLPML------------------------------------- 259 (622)
T ss_dssp CEEECCSSCCSCCC------CCCTTCCEEECCSSCCS-CCCCC-------------------------------------
T ss_pred CEEEccCCccCcCC------CCCCcCcEEECCCCCCC-cCCcc-------------------------------------
Confidence 88888888887642 24578888888888887 56631
Q ss_pred ccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCccccccchhhhcccc
Q 047451 657 SDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQVFLSPFFIDFFF 726 (778)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~p~~~~~~~~ 726 (778)
++.|+.|++++|+|+ .+|..++.+++|+.|++++|+++|.+|..+..+..
T Consensus 260 -------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 260 -------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp -------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred -------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 246888999999999 77888999999999999999999999998876654
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=5.3e-26 Score=243.11 Aligned_cols=261 Identities=21% Similarity=0.215 Sum_probs=146.3
Q ss_pred cCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHh
Q 047451 83 QLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLA 162 (778)
Q Consensus 83 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~ 162 (778)
.++.....+++++.+.. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.|+.+ .+..+
T Consensus 29 ~C~~~~~c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~ 96 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI--------EEDSF 96 (353)
T ss_dssp EECTTSEEECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE--------CTTTT
T ss_pred CCCCCeEeeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc--------CHhhc
Confidence 34555567777777743 566544 4788888888888765555777888888888888765432 23345
Q ss_pred hcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCC-hhhcCCCCCCEEecccCCCCcccCCCCCCCCCCC
Q 047451 163 ENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFP-QEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLE 241 (778)
Q Consensus 163 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 241 (778)
.++++|++|++++|++++..+..|.++++|++|++++|++++..+ ..+..+++|++|++++|.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~---------------- 160 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD---------------- 160 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS----------------
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc----------------
Confidence 666666666666666665555556666666666666666653222 244445555555554442
Q ss_pred EEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccc
Q 047451 242 DLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDS 321 (778)
Q Consensus 242 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (778)
.+.+..+..+..+++|++|++++ |.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 161 -------~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 161 -------TFTKIQRKDFAGLTFLEELEIDA-SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp -------SCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred -------cccccCHHHccCCCCCCEEECCC-CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 23333344555555566666655 5555555566666666666666666665443334445666777777777
Q ss_pred ccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCCCCCchhcccccccEEeccCCcCC
Q 047451 322 NFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIA 396 (778)
Q Consensus 322 ~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 396 (778)
.+++..+..+........++.++++++.+. ++.+..+|..+..+++|++|++++|+++
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~-----------------~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKIT-----------------DESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCC-----------------HHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccccccccccccccccchhhcccccccccc-----------------CcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 666544432222223334444444333322 2222234444555555555555555554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=237.80 Aligned_cols=227 Identities=22% Similarity=0.254 Sum_probs=126.2
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhc
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAEN 164 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~ 164 (778)
+++++|+|++|.+... .+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|+|+.+ .+..+..
T Consensus 64 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI--------PNGAFVY 134 (440)
T ss_dssp TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC--------CTTTSCS
T ss_pred CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee--------CHhHhhc
Confidence 5677777777776543 345666777777777777777666666677777777777777755322 1224555
Q ss_pred CCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCc-CCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEE
Q 047451 165 LTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCR-LQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDL 243 (778)
Q Consensus 165 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 243 (778)
+++|++|++++|.+....+..|..+++|++|++++|. +....+..+..+++|++|++++| .++ .++.+..+++|++|
T Consensus 135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~l~~L~~L 212 (440)
T 3zyj_A 135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLR-EIPNLTPLIKLDEL 212 (440)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCS-SCCCCTTCSSCCEE
T ss_pred cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCc-cccccCCCcccCEE
Confidence 6666666666666665555556666666666666533 33222334555555555555555 232 22344555555555
Q ss_pred eccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccccc
Q 047451 244 RLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNF 323 (778)
Q Consensus 244 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (778)
++++|.+++..+..|..+++|++|++++ |.+++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|.+
T Consensus 213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ECCCCccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 5555555554455555555555555554 455544444555555555555555555544444444444455555544444
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.5e-25 Score=228.37 Aligned_cols=249 Identities=22% Similarity=0.188 Sum_probs=206.3
Q ss_pred cEEecCCCCCCcCCCCCCCcccceeeccccCCCCCC-chhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCC
Q 047451 341 TSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLSEFP-SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYN 419 (778)
Q Consensus 341 ~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 419 (778)
+.++.+++.+.. +|....+++++|++++|.++.++ ..+..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT--GLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC--CccCCCEEeCCCC
Confidence 678888887765 34456789999999999999877 5689999999999999999866677665 8999999999999
Q ss_pred c-cccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCCh
Q 047451 420 L-LMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPA 498 (778)
Q Consensus 420 ~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (778)
. +..+.+. .+..+++|++|++++|.+++ ..+..+.++++|++|++++|++++..+.
T Consensus 91 ~~l~~~~~~-~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 91 AQLRSVDPA-TFHGLGRLHTLHLDRCGLQE----------------------LGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TTCCCCCTT-TTTTCTTCCEEECTTSCCCC----------------------CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCccccCHH-HhcCCcCCCEEECCCCcCCE----------------------ECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 7 7766443 46667888888888877663 4456678889999999999999866666
Q ss_pred hhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCC
Q 047451 499 CLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPE 575 (778)
Q Consensus 499 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 575 (778)
.+..++ +|++|++++|.+++..+..|..+++|++|++++|.+ .|..+..+++|++|++++|++++..+..+..+++
T Consensus 148 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 148 TFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred HhccCC-CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 677777 799999999999988777899999999999999998 5888999999999999999999988888999999
Q ss_pred CCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 576 LEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 576 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
|++|++++|++....+.. .-...++.+..+.+.+.|..|..
T Consensus 227 L~~L~l~~N~~~c~~~~~---~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR---PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CCEEECCSSCEECSGGGH---HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCEEeccCCCccCCCCcH---HHHHHHHhcccccCccccCCchH
Confidence 999999999997543221 12244666778899999999976
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.8e-24 Score=239.27 Aligned_cols=227 Identities=23% Similarity=0.254 Sum_probs=115.0
Q ss_pred CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhc
Q 047451 85 VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAEN 164 (778)
Q Consensus 85 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~ 164 (778)
+++++|+|++|.+... .+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.|+.+ .+..+..
T Consensus 75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--------PSGAFEY 145 (452)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--------CTTTSSS
T ss_pred CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--------Chhhhcc
Confidence 4566666666665443 345566666666666666666655555566666666666666654322 1223445
Q ss_pred CCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccC-cCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEE
Q 047451 165 LTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGC-RLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDL 243 (778)
Q Consensus 165 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 243 (778)
+++|++|++++|.+....+..|.++++|++|++++| .+....+..+..+++|++|++++| .++. .+.+..+++|++|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD-MPNLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS-CCCCTTCTTCCEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc-cccccccccccEE
Confidence 555555555555555544445555555555555553 222222223445555555555555 2222 2344444455555
Q ss_pred eccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccccccc
Q 047451 244 RLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNF 323 (778)
Q Consensus 244 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (778)
++++|.+++..|..|..+++|++|++++ |.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5555555444444444555555555544 444444444444444444444444444444444444444444444444443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.2e-26 Score=241.36 Aligned_cols=247 Identities=19% Similarity=0.172 Sum_probs=182.4
Q ss_pred cccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCC-------CCCCCCCEEEcCCCcCcCCCCc
Q 047451 380 HNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPV-------LPWNNLGALDLRFNKLQGPLPI 452 (778)
Q Consensus 380 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~~~~ 452 (778)
...++|++|++++|.+ .+|..+.. .|+.|++++|.+......... ..+++|++|++++|+++
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT----- 108 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB-----
T ss_pred ccCCCceeEeeccccc--ccHHHHHH----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc-----
Confidence 3445566666666666 45554431 155556666555432211101 02355555555555554
Q ss_pred hhhcccceeEecCCccccCCchhh--hcCCcccccccccccccccCChhhccc-----cccccEEECCCCcccccCcccc
Q 047451 453 PISVLTSSYLVSNNQLTGEIPPSI--CSLNGLYALDLSYNNLSGMLPACLGNF-----SVQLWVLKLQGNKFHGFIPETF 525 (778)
Q Consensus 453 ~~~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----~~~L~~L~Ls~n~l~~~~~~~~ 525 (778)
+.+|..+ ..+++|++|++++|++++. |..+..+ + +|++|++++|++++..+..|
T Consensus 109 -----------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 109 -----------------GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp -----------------SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTC
T ss_pred -----------------chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcC-CCcEEEeeCCCCccchHHHh
Confidence 4555554 7888999999999999866 7777766 5 79999999999998888999
Q ss_pred cCCCCccEEECCCCcc-----Chhhh--hCCCCCCEEeCCCCcCCCC---CcccccCCCCCCEEEccCccccccCCCCcc
Q 047451 526 NKGTNLRMIDFSNNLL-----VPKSL--ANCVKLKFLDLGDNQITDF---FPSWLGTLPELEVLILKSNNFHGVIEEPNA 595 (778)
Q Consensus 526 ~~l~~L~~L~L~~N~l-----~~~~l--~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 595 (778)
.++++|++|++++|++ .+..+ ..+++|++|++++|++++. ....+.++++|++|++++|++++.++...
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS- 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-
Confidence 9999999999999996 23444 8899999999999999843 23455688999999999999998764332
Q ss_pred ccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhh
Q 047451 596 CFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKL 675 (778)
Q Consensus 596 ~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (778)
+..+++|++|++++|.++ .+|..+
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~------------------------------------------------------- 272 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGL------------------------------------------------------- 272 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSC-------------------------------------------------------
T ss_pred hhhcCCCCEEECCCCccC-hhhhhc-------------------------------------------------------
Confidence 256899999999999998 777531
Q ss_pred cccccEEEccCCcccccCchhccCCCCCCeecCCCCcccc
Q 047451 676 SNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQV 715 (778)
Q Consensus 676 ~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~ 715 (778)
.+.|+.||+++|++++. |. +..+++|+.|++++|++++
T Consensus 273 ~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 PAKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 13688999999999977 66 8999999999999999986
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.5e-27 Score=246.57 Aligned_cols=247 Identities=20% Similarity=0.185 Sum_probs=142.1
Q ss_pred ccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCC-ccCchhhh-------CCCCCCEEECcCCCCCcccccc
Q 047451 82 FQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFS-GQIPAELL-------ELSNLEVLDLSFNTFDNFFLKL 153 (778)
Q Consensus 82 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~i~~~~~~~ 153 (778)
+..++|++|++++|.+ .+|..+... |++|+|++|.+. ..+|..+. ++++|++|++++|.++.
T Consensus 40 ~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----- 109 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG----- 109 (312)
T ss_dssp EEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS-----
T ss_pred ccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc-----
Confidence 3344555555555555 245444433 555555555552 23444443 45566666666654421
Q ss_pred cCCchhHHh--hcCCCCCEEEccCccCCCCcchhhcCC-----CCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCC
Q 047451 154 QKPGLANLA--ENLTNLKALDLINVHISSTVPHTLANL-----SSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPN 226 (778)
Q Consensus 154 ~~~~l~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~ 226 (778)
.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..+..+++|++|++++| .
T Consensus 110 ---~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 184 (312)
T 1wwl_A 110 ---TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN-P 184 (312)
T ss_dssp ---CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSC-T
T ss_pred ---hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCC-C
Confidence 122222 5556666666666666554 5555544 66666666666666555556666666666666666 3
Q ss_pred Cccc---CC--CCCCCCCCCEEeccCCcCCc---cCcccccCCCCCCeEeccCCCCCcccCC-ccccCCCCCCeeccccc
Q 047451 227 LTGY---LP--QFQKSSPLEDLRLSYTRFSG---KIPSSLGNLTKLEDLYLSGGNGFSNELP-PSIGNLASLKTLEISSF 297 (778)
Q Consensus 227 ~~~~---~~--~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~~n~l~~~~~-~~l~~l~~L~~L~L~~n 297 (778)
+.+. .+ .+..+++|++|++++|.+++ .....+..+++|++|++++ |.+++..| ..+..+++|+.|++++|
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCC
Confidence 3322 11 23566667777777776662 1123334567777777776 66666553 34455677777777777
Q ss_pred ccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCc
Q 047451 298 NFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNE 352 (778)
Q Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 352 (778)
.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 264 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~----~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 264 GLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS----PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCS-SCCSSCC--SEEEEEECCSSCCCSC-CC----TTTSCEEEEEECTTCTTTC
T ss_pred ccC-hhhhhcc--CCceEEECCCCCCCCC-hh----HhhCCCCCEEeccCCCCCC
Confidence 776 4455444 6777777777777765 32 4566777777777777664
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=9.4e-26 Score=237.10 Aligned_cols=240 Identities=21% Similarity=0.180 Sum_probs=176.5
Q ss_pred hcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhccc
Q 047451 379 LHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLT 458 (778)
Q Consensus 379 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l 458 (778)
+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+ +..+++|++|++++|++++..+ .+.+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~---~~~L 101 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV---GPSI 101 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHT--TCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE---CTTC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhh--CCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC---CCCc
Confidence 34445666666666666644444444 56666666666666655443 4455666666666666654322 2566
Q ss_pred ceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccc-cCCCCccEEECC
Q 047451 459 SSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETF-NKGTNLRMIDFS 537 (778)
Q Consensus 459 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~ 537 (778)
++|++++|.+++..+. .+++|++|++++|++++..+..+..++ +|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 6777777776654433 357789999999999876676777777 79999999999988777666 478899999999
Q ss_pred CCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCC
Q 047451 538 NNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGN 615 (778)
Q Consensus 538 ~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 615 (778)
+|.+ .+ ....+++|++|++++|+++++.+ .+..+++|++|++++|+++++ |..+ ..+++|+.|++++|+++|.
T Consensus 178 ~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~--~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 178 YNFIYDVK-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKAL--RFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TSCCCEEE-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTC--CCCTTCCEEECTTCCCBHH
T ss_pred CCcCcccc-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccch-hhHh--hcCCCCCEEEccCCCccCc
Confidence 9998 33 33458999999999999998755 488999999999999999975 4444 6789999999999999966
Q ss_pred CChHHHhccccccccccCCc
Q 047451 616 LPSKHFECWNAMKDVNANNL 635 (778)
Q Consensus 616 ip~~~~~~~~~l~~l~~~~~ 635 (778)
.+..++..++.++.+++..+
T Consensus 253 ~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 253 TLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHhccccceEEECCCc
Confidence 66678899998888876644
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.2e-23 Score=238.64 Aligned_cols=146 Identities=24% Similarity=0.264 Sum_probs=94.1
Q ss_pred cccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEE
Q 047451 456 VLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMID 535 (778)
Q Consensus 456 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 535 (778)
..++.|++++|.+++ +| ..+++|+.|++++|++++ +|..+ . +|+.|++++|.++.. |. .+++|+.|+
T Consensus 161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~~---~-~L~~L~L~~N~l~~l-~~---~~~~L~~L~ 227 (622)
T 3g06_A 161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTLP---S-ELYKLWAYNNRLTSL-PA---LPSGLKELI 227 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCSSC-CC---CCTTCCEEE
T ss_pred CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCcc---c-hhhEEECcCCccccc-CC---CCCCCCEEE
Confidence 344444444444443 33 335667777777777763 34322 2 577777777777743 32 236677777
Q ss_pred CCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCC
Q 047451 536 FSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 536 L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 613 (778)
+++|.+ +| ..+++|+.|++++|+|+.+.+ .+++|+.|+|++|+|+.+ |..+ ..+++|+.|++++|+++
T Consensus 228 Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~l-p~~l--~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 228 VSGNRLTSLP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRL-PESL--IHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSC-CGGG--GGSCTTCEEECCSCCCC
T ss_pred ccCCccCcCC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcC-CHHH--hhccccCEEEecCCCCC
Confidence 777777 55 456778888888888876533 567788888888888743 4443 67888888888888888
Q ss_pred CCCChHHHhccc
Q 047451 614 GNLPSKHFECWN 625 (778)
Q Consensus 614 ~~ip~~~~~~~~ 625 (778)
+.+|.. +..+.
T Consensus 298 ~~~~~~-l~~L~ 308 (622)
T 3g06_A 298 ERTLQA-LREIT 308 (622)
T ss_dssp HHHHHH-HHHHH
T ss_pred CcCHHH-HHhcc
Confidence 666543 44443
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=9.8e-28 Score=275.96 Aligned_cols=458 Identities=17% Similarity=0.151 Sum_probs=272.9
Q ss_pred CCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCC-CC-C------------chhhcCCCC
Q 047451 46 CCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNF-SE-I------------PSEILNFSR 111 (778)
Q Consensus 46 ~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~-~------------~~~~~~l~~ 111 (778)
|+.|.++.. ...+.++++..... .+ ...+.++++|++|+++++.... .. . +.....+++
T Consensus 34 ck~W~~~~~----~~~~~l~~~~~~~~--~~-~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~ 106 (594)
T 2p1m_B 34 CKSWYEIER----WCRRKVFIGNCYAV--SP-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106 (594)
T ss_dssp CHHHHHHHH----HHCCEEEESSTTSS--CH-HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHHHHHhhh----hhceEEeecccccc--CH-HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence 556877732 12345566544321 11 1256788999999999875211 00 1 122456889
Q ss_pred CCEEECCCCCCCccCchhhh-CCCCCCEEECcCCC-CCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhc--
Q 047451 112 LTHLNLSRSYFSGQIPAELL-ELSNLEVLDLSFNT-FDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLA-- 187 (778)
Q Consensus 112 L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-- 187 (778)
|++|+|++|.+++..+..+. .+++|++|++++|. ++. ..++..+.++++|++|++++|.+++..+..+.
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-------DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-------HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-------HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 99999999998877777775 68999999999983 221 23666677899999999999988765555444
Q ss_pred --CCCCCCEEEcccCc--CCCC-CChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCc-------CCccCc
Q 047451 188 --NLSSLHFLSLSGCR--LQGE-FPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTR-------FSGKIP 255 (778)
Q Consensus 188 --~l~~L~~L~Ls~n~--l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~ 255 (778)
.+++|++|++++|. +... ++..+..+++|++|++++|....+....+..+++|++|+++.+. +.+ ++
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~ 258 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LS 258 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HH
Confidence 66799999999987 2211 11223457999999999884444422256677889999866553 222 33
Q ss_pred ccccCCCCCCeE-eccCCCCCcccCCccccCCCCCCeecccccccCCch-hhhccCCCCCCcccccccccCCCCCcchhh
Q 047451 256 SSLGNLTKLEDL-YLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTL-QASLGNLTQLDSLTISDSNFSGPMSSSLSW 333 (778)
Q Consensus 256 ~~~~~l~~L~~L-~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 333 (778)
..+.++++|+.| .+.+ .....++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.. ..+..
T Consensus 259 ~~l~~~~~L~~Ls~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~---~~l~~ 332 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWD--AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED---AGLEV 332 (594)
T ss_dssp HHHHTCTTCCEEECCBT--CCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH---HHHHH
T ss_pred HHHhcCCCcccccCCcc--cchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH---HHHHH
Confidence 467788888888 4432 222334444556788888888888866432 233567888888888877 331 11112
Q ss_pred -hcCCCCCcEEecCCCCCCcCCCCCCCcccceeeccccCCC--CCCchhcccccccEEeccCCcCCCCCchhHHhcCCCC
Q 047451 334 -LTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLRSCNLS--EFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNS 410 (778)
Q Consensus 334 -l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 410 (778)
...+++|++|++.++.-.+ ....+.++ .+......+++|++|++..|.+++.....+. ..+++
T Consensus 333 l~~~~~~L~~L~L~~~~~~g-------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-~~~~~ 398 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFV-------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-RNRPN 398 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTC-------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-HHCTT
T ss_pred HHHhCCCCCEEEEecCcccc-------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-hhCCC
Confidence 2346778888775432110 00111111 1111223356677776666666533333322 13556
Q ss_pred ccEEecc--C----CccccccCC----CCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhc-C
Q 047451 411 LQYLNLS--Y----NLLMHFEHN----LPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICS-L 479 (778)
Q Consensus 411 L~~L~Ls--~----n~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~-l 479 (778)
|+.|+++ + +.++..+.. ..+..+++|+.|+++ + .+++..+..+.. +
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~----------------------~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLS----------------------G-LLTDKVFEYIGTYA 455 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECC----------------------S-SCCHHHHHHHHHHC
T ss_pred cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeec----------------------C-cccHHHHHHHHHhc
Confidence 6666665 2 222211100 001123444444443 3 333333344444 7
Q ss_pred CcccccccccccccccCChhh-ccccccccEEECCCCcccccCcc-cccCCCCccEEECCCCccChhh---h-hCCCCCC
Q 047451 480 NGLYALDLSYNNLSGMLPACL-GNFSVQLWVLKLQGNKFHGFIPE-TFNKGTNLRMIDFSNNLLVPKS---L-ANCVKLK 553 (778)
Q Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~---l-~~l~~L~ 553 (778)
++|++|++++|.+++..+..+ ..++ +|++|++++|.+++.... ....+++|++|++++|++.+.. + ..++.|+
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCD-SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCT-TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCC-CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 778888888888765544444 3455 688888888888644333 3445788888888888883322 3 4567787
Q ss_pred EEeCCCCcC
Q 047451 554 FLDLGDNQI 562 (778)
Q Consensus 554 ~L~Ls~N~l 562 (778)
...+..+.-
T Consensus 535 i~~~~~~~~ 543 (594)
T 2p1m_B 535 VEVIDERGA 543 (594)
T ss_dssp EEEECSSSC
T ss_pred EEEecCCCc
Confidence 777766543
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=6.6e-27 Score=269.06 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=58.1
Q ss_pred CCCCCCeEeccCCCCCcccCCccccCCCCCCeeccccc-------ccCCchhhhccCCCCCCcc-cccccccCCCCCcch
Q 047451 260 NLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSF-------NFSGTLQASLGNLTQLDSL-TISDSNFSGPMSSSL 331 (778)
Q Consensus 260 ~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n-------~l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~ 331 (778)
.+++|++|++++|..+.+ ++..+..+++|+.|+++.+ .+.+ ++..+.++++|+.+ .+.+... +..+.
T Consensus 209 ~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~-- 283 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA-- 283 (594)
T ss_dssp HCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG--
T ss_pred hCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH--
Confidence 345566666655323332 4444455555666654333 2222 23356666777766 3332211 11111
Q ss_pred hhhcCCCCCcEEecCCCCCCcCCC---CCCCcccceeeccccCCC--CCCchhcccccccEEec
Q 047451 332 SWLTNLNQLTSLNFPNCNLNEPLL---VPNTQKFEIIGLRSCNLS--EFPSFLHNQDQLISLDL 390 (778)
Q Consensus 332 ~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L 390 (778)
.+..+++|++|++++|.+.+... ...+++|+.|++++| +. .++.....+++|++|++
T Consensus 284 -~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 284 -VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp -GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred -HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 22345677777777766543211 124455555555555 22 12222334556666665
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=241.98 Aligned_cols=235 Identities=22% Similarity=0.181 Sum_probs=172.5
Q ss_pred ccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeE
Q 047451 383 DQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYL 462 (778)
Q Consensus 383 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 462 (778)
++|++|++++|.+++..|..+. .+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ .+.+++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV---GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE---CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC---CCCcCEEE
Confidence 3566666666666654444444 56666666666666655443 4455666666666666654332 25666777
Q ss_pred ecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCccccc-CCCCccEEECCCCcc
Q 047451 463 VSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFN-KGTNLRMIDFSNNLL 541 (778)
Q Consensus 463 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l 541 (778)
+++|.+++..+. .+++|++|++++|.+++..|..+..++ +|++|++++|.+++..|..+. .+++|+.|+|++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 777776655443 357788899999998877777777777 799999999999887777775 788999999999988
Q ss_pred -ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHH
Q 047451 542 -VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKH 620 (778)
Q Consensus 542 -~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~ 620 (778)
.......+++|++|+|++|++++++|. +..+++|+.|++++|.++++ |..+ ..+++|+.|++++|+++|..+..+
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l--~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKAL--RFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTC--CCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhh--ccCCCCCEEEcCCCCCcCcchHHH
Confidence 222344689999999999999987554 88999999999999999975 3444 678999999999999996555567
Q ss_pred HhccccccccccC
Q 047451 621 FECWNAMKDVNAN 633 (778)
Q Consensus 621 ~~~~~~l~~l~~~ 633 (778)
+..+..++.++..
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8888888777653
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-25 Score=235.58 Aligned_cols=264 Identities=19% Similarity=0.175 Sum_probs=155.1
Q ss_pred CCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccceeecc
Q 047451 289 LKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFEIIGLR 368 (778)
Q Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~L~ 368 (778)
++..+++.+.+.......+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~------------ 76 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA---DLAPFTKLELLNLSSNVLYETLDL------------ 76 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH---HHTTCTTCCEEECTTSCCEEEEEE------------
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH---HhhCCCcCCEEECCCCcCCcchhh------------
Confidence 45556666666545555556666777777777777766555 566677777777777766543333
Q ss_pred ccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcC
Q 047451 369 SCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQG 448 (778)
Q Consensus 369 ~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 448 (778)
..+++|++|++++|++++ ++ ..++|++|++++|.+.+.... .+++|+.|++++|++++
T Consensus 77 -----------~~l~~L~~L~Ls~n~l~~-l~------~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~ 134 (317)
T 3o53_A 77 -----------ESLSTLRTLDLNNNYVQE-LL------VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITM 134 (317)
T ss_dssp -----------TTCTTCCEEECCSSEEEE-EE------ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCS
T ss_pred -----------hhcCCCCEEECcCCcccc-cc------CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCC
Confidence 334444445554444431 11 123444444444444443322 12445555555555442
Q ss_pred CCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhc-cccccccEEECCCCcccccCcccccC
Q 047451 449 PLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLG-NFSVQLWVLKLQGNKFHGFIPETFNK 527 (778)
Q Consensus 449 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~ 527 (778)
..+..+..+++|++|++++|.+++..+..+. .++ +|++|++++|.+++.. ....
T Consensus 135 ----------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~--~~~~ 189 (317)
T 3o53_A 135 ----------------------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVK--GQVV 189 (317)
T ss_dssp ----------------------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEE--CCCC
T ss_pred ----------------------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCcccc--cccc
Confidence 3334555666677777777777655555553 344 5777777777776552 2234
Q ss_pred CCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccc-ccCCCCccccccCcCcE
Q 047451 528 GTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFH-GVIEEPNACFEFVKLRI 604 (778)
Q Consensus 528 l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~ 604 (778)
+++|++|++++|++ +|..+..+++|++|++++|+++++ |..+..+++|+.|++++|++. +..+..+ ..+++|+.
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~~~--~~~~~L~~ 266 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQT 266 (317)
T ss_dssp CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHHHH--HTCHHHHH
T ss_pred cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCHHHHH--hccccceE
Confidence 67777777777777 555577777777777777777753 556777777777777777776 3333332 56677777
Q ss_pred EEcCCC-cCCCCCC
Q 047451 605 IDLSHN-RFAGNLP 617 (778)
Q Consensus 605 L~ls~N-~l~~~ip 617 (778)
+++++| .++|..|
T Consensus 267 l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 267 VAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHHSSSS
T ss_pred EECCCchhccCCch
Confidence 777733 3444333
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.9e-24 Score=240.44 Aligned_cols=242 Identities=20% Similarity=0.182 Sum_probs=195.4
Q ss_pred CcccceeeccccCCCCCC-chhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCC
Q 047451 359 TQKFEIIGLRSCNLSEFP-SFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLG 437 (778)
Q Consensus 359 ~~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 437 (778)
+++|+.|++++|.+..++ ..+..+++|++|++++|.+++..| +. .+++|++|++++|.+++++.. ++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~~------~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG------PSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEEC------TTCC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCCC------CCcC
Confidence 345666666666666554 567888888888888888875554 33 788888888888888877643 7889
Q ss_pred EEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhc-cccccccEEECCCCc
Q 047451 438 ALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLG-NFSVQLWVLKLQGNK 516 (778)
Q Consensus 438 ~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~n~ 516 (778)
.|++++|.+++..+.. .+.++.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .++ +|++|+|++|.
T Consensus 103 ~L~L~~N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-~L~~L~Ls~N~ 180 (487)
T 3oja_A 103 TLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNF 180 (487)
T ss_dssp EEECCSSCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSC
T ss_pred EEECcCCcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-cccEEecCCCc
Confidence 9999999888765543 56789999999999988888999999999999999999988888876 566 79999999999
Q ss_pred ccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccc-ccCCCC
Q 047451 517 FHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFH-GVIEEP 593 (778)
Q Consensus 517 l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 593 (778)
+++.. .+..+++|+.|+|++|.+ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.++..
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 99773 344689999999999999 66779999999999999999998 4667899999999999999998 433333
Q ss_pred ccccccCcCcEEEcC-------CCcCCCCCC
Q 047451 594 NACFEFVKLRIIDLS-------HNRFAGNLP 617 (778)
Q Consensus 594 ~~~~~l~~L~~L~ls-------~N~l~~~ip 617 (778)
+ ..++.|+.++++ .|+..|.+|
T Consensus 258 ~--~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 258 F--SKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp H--TTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred H--HhCCCCcEEeccccccccCCCcccccCC
Confidence 3 667888888886 677666655
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.4e-23 Score=213.16 Aligned_cols=229 Identities=24% Similarity=0.239 Sum_probs=166.0
Q ss_pred eeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCC
Q 047451 365 IGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFN 444 (778)
Q Consensus 365 L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 444 (778)
++..+..+..+|..+. +++++|++++|.+++..+..+. .+++|++|++++|.+..+... .+..+++|++|++++|
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCC
Confidence 4455555666665432 4677777777777644333443 566666666666666655442 2444556666666665
Q ss_pred cCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCccccc-Ccc
Q 047451 445 KLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGF-IPE 523 (778)
Q Consensus 445 ~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~ 523 (778)
.++ +..+..|.++++|++|++++|++.+..+..+..++ +|++|++++|.+++. +|.
T Consensus 87 ~l~----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 87 PIQ----------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp CCC----------------------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCG
T ss_pred ccC----------------------ccChhhhcCCccccEEECCCCCccccCchhcccCC-CCCEEECcCCccceecCch
Confidence 554 34556677888888888888888866555677777 689999999888864 478
Q ss_pred cccCCCCccEEECCCCcc---ChhhhhCCCCCC----EEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccc
Q 047451 524 TFNKGTNLRMIDFSNNLL---VPKSLANCVKLK----FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNAC 596 (778)
Q Consensus 524 ~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 596 (778)
.|..+++|++|++++|++ .+..+..+++|+ +|++++|++++..+..+.. .+|+.|++++|++++..+..+
T Consensus 144 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~-- 220 (276)
T 2z62_A 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF-- 220 (276)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT--
T ss_pred hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh--
Confidence 888889999999999988 455666666666 8999999999887766655 489999999999998766555
Q ss_pred cccCcCcEEEcCCCcCCCCCC-hHHHhcc
Q 047451 597 FEFVKLRIIDLSHNRFAGNLP-SKHFECW 624 (778)
Q Consensus 597 ~~l~~L~~L~ls~N~l~~~ip-~~~~~~~ 624 (778)
..+++|+.|++++|+++|.+| ..++..|
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cccccccEEEccCCcccccCCchHHHHHH
Confidence 789999999999999999998 3455555
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.6e-23 Score=214.02 Aligned_cols=207 Identities=22% Similarity=0.221 Sum_probs=150.0
Q ss_pred hcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEE
Q 047451 455 SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMI 534 (778)
Q Consensus 455 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 534 (778)
+..+++|++++|++++..+..|.++++|++|++++|++++..+..+..++ +|++|++++|.+++..+..|.++++|++|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccChhhhcCCccccEE
Confidence 34455555555555555555677777888888888877765566666666 68888888888877777777777778888
Q ss_pred ECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCC-CcccccCCCCCCEEEccCccccccCCCCccccccCcCc----EEE
Q 047451 535 DFSNNLL---VPKSLANCVKLKFLDLGDNQITDF-FPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLR----IID 606 (778)
Q Consensus 535 ~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~----~L~ 606 (778)
++++|.+ .+..+..+++|++|++++|++++. .|..|..+++|++|++++|++++..+..+ ..+++|+ .|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--RVLHQMPLLNLSLD 183 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG--HHHHTCTTCCEEEE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh--hhhhhccccceeee
Confidence 8877777 233577777788888888877764 36777777778888888887777654444 4455555 777
Q ss_pred cCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccC
Q 047451 607 LSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSN 686 (778)
Q Consensus 607 ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~ 686 (778)
+++|+++ .+|...+. ...|+.|++++
T Consensus 184 ls~n~l~-~~~~~~~~-----------------------------------------------------~~~L~~L~L~~ 209 (276)
T 2z62_A 184 LSLNPMN-FIQPGAFK-----------------------------------------------------EIRLKELALDT 209 (276)
T ss_dssp CCSSCCC-EECTTSSC-----------------------------------------------------SCCEEEEECCS
T ss_pred cCCCccc-ccCccccC-----------------------------------------------------CCcccEEECCC
Confidence 7777776 33322110 12688999999
Q ss_pred CcccccCchhccCCCCCCeecCCCCccccccc
Q 047451 687 NSFVGEIPTSISNLKGLRTLNLSNNNLQVFLS 718 (778)
Q Consensus 687 n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~p 718 (778)
|++++..+..|+.+++|+.|++++|++++..|
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99998888888999999999999999998776
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-22 Score=207.23 Aligned_cols=212 Identities=24% Similarity=0.280 Sum_probs=134.4
Q ss_pred CCCCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Q 047451 44 SDCCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFS 123 (778)
Q Consensus 44 ~~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 123 (778)
.++|.|.|+.|.-. +.++.++++++.++. +|. .+. +++++|+|++|.+... .+..|.++++|++|++++|.++
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 36899999998642 456788898888764 333 232 5788888888887643 3456788888888888888887
Q ss_pred ccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCC
Q 047451 124 GQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQ 203 (778)
Q Consensus 124 ~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 203 (778)
...+..|..+++|++|++++|.++.+ .+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQAL--------PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCCC--------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eeChhhhcCCCCCCEEECCCCcCCcC--------CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 55555567788888888888865432 2234566677777777777777666666667777777777777666
Q ss_pred CCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccC
Q 047451 204 GEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSG 271 (778)
Q Consensus 204 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 271 (778)
+..+..+..+++|++|++++| .++...+ .|..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 444444556666666666655 3332222 344555555555555555444333444444444444444
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-22 Score=206.76 Aligned_cols=210 Identities=24% Similarity=0.268 Sum_probs=163.9
Q ss_pred cccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEe
Q 047451 384 QLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLV 463 (778)
Q Consensus 384 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l 463 (778)
..+.++++++.++ .+|..+ .+++++|++++|.+..+... .+..+++|++|++++|.++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~----~~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~---------------- 74 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI----PADTKKLDLQSNKLSSLPSK-AFHRLTKLRLLYLNDNKLQ---------------- 74 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC----CTTCSEEECCSSCCSCCCTT-SSSSCTTCCEEECCSSCCS----------------
T ss_pred CCCEEEccCCCCC-ccCCCC----CCCCCEEECcCCCCCeeCHH-HhcCCCCCCEEECCCCccC----------------
Confidence 4667777777776 455432 24566666666666655432 3444555666665555544
Q ss_pred cCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--
Q 047451 464 SNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-- 541 (778)
Q Consensus 464 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-- 541 (778)
+..+..|..+++|++|++++|++++..+..+..++ +|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 75 ------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 75 ------TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp ------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ------eeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc
Confidence 34445678899999999999999866666677777 799999999999988888899999999999999999
Q ss_pred C-hhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCC-hH
Q 047451 542 V-PKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP-SK 619 (778)
Q Consensus 542 ~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip-~~ 619 (778)
+ +..|..+++|++|++++|+++++.+..|..+++|++|++++|+++++.+..+ ..+++|+.|++++|++.|.++ ..
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~~~~ 225 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF--DSLEKLKMLQLQENPWDCTCNGII 225 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCSSSSSH
T ss_pred cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh--ccccCCCEEEecCCCeeCCCccHH
Confidence 4 4458899999999999999999988889999999999999999998766555 789999999999999999887 34
Q ss_pred HHhcc
Q 047451 620 HFECW 624 (778)
Q Consensus 620 ~~~~~ 624 (778)
++..|
T Consensus 226 ~~~~~ 230 (270)
T 2o6q_A 226 YMAKW 230 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9.1e-23 Score=209.23 Aligned_cols=211 Identities=20% Similarity=0.246 Sum_probs=161.0
Q ss_pred hcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEE
Q 047451 455 SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMI 534 (778)
Q Consensus 455 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 534 (778)
...++.+++++|.++. + ..+..+++|++|++++|.+++ + ..+..++ +|++|++++|.+++..+..|..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCC-CCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 4445555555555442 2 347778888888888888875 3 3666777 68899999998888877778888889999
Q ss_pred ECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCc
Q 047451 535 DFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNR 611 (778)
Q Consensus 535 ~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~ 611 (778)
++++|++ .+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|++|++++|+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF--DKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh--cCCccCCEEECCCCc
Confidence 9998888 44557888999999999999988888888889999999999999987766554 678899999999999
Q ss_pred CCCCCChHHHhccccccccccCCcccccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccc
Q 047451 612 FAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVG 691 (778)
Q Consensus 612 l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ 691 (778)
+++ +|...|.. ++.|+.|++++|.+.+
T Consensus 193 l~~-~~~~~~~~----------------------------------------------------l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 193 LKS-VPDGVFDR----------------------------------------------------LTSLQYIWLHDNPWDC 219 (272)
T ss_dssp CSC-CCTTTTTT----------------------------------------------------CTTCCEEECCSSCBCC
T ss_pred CCc-cCHHHHhC----------------------------------------------------CcCCCEEEccCCCccc
Confidence 885 44332222 3467788889998876
Q ss_pred cCchhccCCCCCCeecCCCCccccccchhhhccccccccCC
Q 047451 692 EIPTSISNLKGLRTLNLSNNNLQVFLSPFFIDFFFFYSRCP 732 (778)
Q Consensus 692 ~~p~~~~~l~~l~~l~ls~n~l~~~~p~~~~~~~~~~~~~~ 732 (778)
. +++|+.++++.|.++|.+|.+++.+......|.
T Consensus 220 ~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~~~~~c~ 253 (272)
T 3rfs_A 220 T-------CPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCS 253 (272)
T ss_dssp C-------TTTTHHHHHHHHHTGGGBBCTTSCBCGGGSBBT
T ss_pred c-------CcHHHHHHHHHHhCCCcccCcccccCCCCCccC
Confidence 5 446888999999999999999888765444443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.2e-22 Score=208.31 Aligned_cols=201 Identities=22% Similarity=0.250 Sum_probs=154.6
Q ss_pred ccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeE
Q 047451 383 DQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYL 462 (778)
Q Consensus 383 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 462 (778)
..+..+++..+.+.+..... .+++|+.|++++|.+..... +..+++|++|++++|.+.
T Consensus 19 ~~l~~l~l~~~~~~~~~~~~----~l~~L~~L~l~~~~i~~~~~---l~~l~~L~~L~l~~n~l~--------------- 76 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLH--------------- 76 (272)
T ss_dssp HHHHHHHHTCSCTTSEECHH----HHTTCCEEECTTSCCCCCTT---GGGCTTCCEEECTTSCCC---------------
T ss_pred HHHHHHHhcCcccccccccc----cccceeeeeeCCCCcccccc---cccCCCCcEEECCCCCCC---------------
Confidence 34445566666555332221 55677777777777665432 344566666666666654
Q ss_pred ecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-
Q 047451 463 VSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL- 541 (778)
Q Consensus 463 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 541 (778)
+ + ..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..|..+++|++|++++|++
T Consensus 77 -------~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 77 -------D-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp -------C-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------C-c-hhhcCCCCCCEEECCCCccCccChhHhcCCc-CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC
Confidence 2 2 3577888899999999999876666677777 799999999999988888888999999999999988
Q ss_pred --ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCC
Q 047451 542 --VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP 617 (778)
Q Consensus 542 --~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip 617 (778)
.+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+ ..+++|++|++++|++.|.+|
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH--hCCcCCCEEEccCCCccccCc
Confidence 44557889999999999999999888888999999999999999998876655 788999999999999988766
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=3.9e-22 Score=206.07 Aligned_cols=211 Identities=25% Similarity=0.290 Sum_probs=167.5
Q ss_pred hcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhccc
Q 047451 379 LHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLT 458 (778)
Q Consensus 379 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l 458 (778)
+..++++++++++++.++ .+|..+ .+.++.|++++|.+..+.+. .+..+++|+.|++++|.+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~----~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~---------- 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL----PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTK---------- 69 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC----CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCE----------
T ss_pred ccccCCccEEECCCCCCC-cCCCCC----CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCc----------
Confidence 456677888888888876 555432 25677777777777666543 34556667777776666552
Q ss_pred ceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCC
Q 047451 459 SSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSN 538 (778)
Q Consensus 459 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 538 (778)
. +. ...+++|++|++++|+++ .+|..+..++ +|++|++++|++++..+..|.++++|++|++++
T Consensus 70 ------------~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 70 ------------L-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp ------------E-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred ------------c-cC-CCCCCcCCEEECCCCcCC-cCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 2 22 256788999999999998 6777777777 799999999999988888899999999999999
Q ss_pred Ccc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCC
Q 047451 539 NLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGN 615 (778)
Q Consensus 539 N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 615 (778)
|++ .+..|..+++|+.|+|++|+++++.+..|..+++|+.|+|++|+++.+. ..+ ...++|+.+++++|++.|.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip-~~~--~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP-KGF--FGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC-TTT--TTTCCCSEEECCSCCBCCS
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC-hhh--cccccCCeEEeCCCCccCc
Confidence 998 4556788999999999999999988888999999999999999999654 333 5678999999999999999
Q ss_pred CChHHHhcc
Q 047451 616 LPSKHFECW 624 (778)
Q Consensus 616 ip~~~~~~~ 624 (778)
+...+|..|
T Consensus 211 c~~~~l~~w 219 (290)
T 1p9a_G 211 CEILYFRRW 219 (290)
T ss_dssp GGGHHHHHH
T ss_pred CccHHHHHH
Confidence 877777766
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=208.80 Aligned_cols=223 Identities=17% Similarity=0.138 Sum_probs=177.4
Q ss_pred CCCCEEEcCCCcCcCCCCch-----hhcccceeEecCCccccCCchhh--hcCCcccccccccccccccCC----hhhcc
Q 047451 434 NNLGALDLRFNKLQGPLPIP-----ISVLTSSYLVSNNQLTGEIPPSI--CSLNGLYALDLSYNNLSGMLP----ACLGN 502 (778)
Q Consensus 434 ~~L~~L~L~~n~l~~~~~~~-----~~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~~~~ 502 (778)
..++.+.+.++.+....-.. ....+++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45777888877765321111 14569999999999998888887 889999999999999997555 33445
Q ss_pred ccccccEEECCCCcccccCcccccCCCCccEEECCCCccC-------hhhhhCCCCCCEEeCCCCcCCCCCcc---cccC
Q 047451 503 FSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLLV-------PKSLANCVKLKFLDLGDNQITDFFPS---WLGT 572 (778)
Q Consensus 503 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~l~~l~~L~~L~Ls~N~l~~~~~~---~~~~ 572 (778)
++ +|++|++++|.+.+..+..|..+++|++|+|++|++. +..+..+++|++|+|++|+++...+. .+..
T Consensus 144 ~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KP-GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp CS-CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred cc-CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 66 7999999999999988899999999999999999972 23346899999999999999754221 3578
Q ss_pred CCCCCEEEccCccccccCCCCcc-ccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCcccccccCCCCCCCCCc
Q 047451 573 LPELEVLILKSNNFHGVIEEPNA-CFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTYLQDSLLGPVSYPAY 651 (778)
Q Consensus 573 l~~L~~L~Ls~N~l~~~~~~~~~-~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 651 (778)
+++|++|+|++|++++..|..+. +..+++|++|++++|+++ .+|..+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~------------------------------- 270 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL------------------------------- 270 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-------------------------------
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-------------------------------
Confidence 89999999999999988665541 122379999999999998 777431
Q ss_pred cccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCcccc
Q 047451 652 THYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQV 715 (778)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~ 715 (778)
.+.|+.||+++|++++. |. +..+++|+.|++++|+++.
T Consensus 271 ------------------------~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 271 ------------------------PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ------------------------CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ------------------------cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 13688899999999975 44 6889999999999999975
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3e-21 Score=195.37 Aligned_cols=186 Identities=23% Similarity=0.264 Sum_probs=153.3
Q ss_pred CCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCC
Q 047451 436 LGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGN 515 (778)
Q Consensus 436 L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n 515 (778)
.+.++++++.++. +|..++..++.|++++|.+++..+..|.++++|++|++++|++++..+..+..++ +|++|++++|
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTS
T ss_pred CeEEecCCCCccc-cCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCC
Confidence 3445555555542 3333445566666666666667777889999999999999999987777788888 7999999999
Q ss_pred cccccCcccccCCCCccEEECCCCcc--C-hhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCC
Q 047451 516 KFHGFIPETFNKGTNLRMIDFSNNLL--V-PKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEE 592 (778)
Q Consensus 516 ~l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 592 (778)
.+++..+..|..+++|++|+|++|++ + +..|..+++|++|+|++|+++++.+..|..+++|++|+|++|++++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 99988888999999999999999999 4 45578999999999999999999888999999999999999999988776
Q ss_pred CccccccCcCcEEEcCCCcCCCC-CChHHHhccc
Q 047451 593 PNACFEFVKLRIIDLSHNRFAGN-LPSKHFECWN 625 (778)
Q Consensus 593 ~~~~~~l~~L~~L~ls~N~l~~~-ip~~~~~~~~ 625 (778)
.+ ..+++|++|++++|+++|. +...++..|.
T Consensus 174 ~~--~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 174 AF--DRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp TT--TTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred HH--hCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 65 7899999999999999988 5555555553
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=8.5e-21 Score=196.04 Aligned_cols=199 Identities=26% Similarity=0.295 Sum_probs=148.7
Q ss_pred CCcccceeeccccCCCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCC
Q 047451 358 NTQKFEIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLG 437 (778)
Q Consensus 358 ~~~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 437 (778)
.++++++++++++.++.+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.++.+... ..+++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~---~~l~~L~ 80 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD---GTLPVLG 80 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC---SCCTTCC
T ss_pred ccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC---CCCCcCC
Confidence 34556666666666666665443 5788888888888755555555 778888888888888776553 4567888
Q ss_pred EEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcc
Q 047451 438 ALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKF 517 (778)
Q Consensus 438 ~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l 517 (778)
+|++++|+++ .+|..+..+++|++|++++|++++..+..|..++ +|++|++++|++
T Consensus 81 ~L~Ls~N~l~-----------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l 136 (290)
T 1p9a_G 81 TLDLSHNQLQ-----------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNEL 136 (290)
T ss_dssp EEECCSSCCS-----------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-TCCEEECTTSCC
T ss_pred EEECCCCcCC-----------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-CCCEEECCCCCC
Confidence 8888888776 4455667778888888888888866666777777 688888888888
Q ss_pred cccCcccccCCCCccEEECCCCcc--Ch-hhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccc
Q 047451 518 HGFIPETFNKGTNLRMIDFSNNLL--VP-KSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHG 588 (778)
Q Consensus 518 ~~~~~~~~~~l~~L~~L~L~~N~l--~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 588 (778)
++..+..|..+++|+.|+|++|++ +| ..|..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 877777788888888888888888 44 4567788888888888888864 5566677788899999888753
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.6e-22 Score=214.61 Aligned_cols=264 Identities=22% Similarity=0.219 Sum_probs=186.3
Q ss_pred CCCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccC--CCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCC
Q 047451 45 DCCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQL--VHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYF 122 (778)
Q Consensus 45 ~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 122 (778)
-|..|.++.|+ ...++.++++++.+... .+..+ +++++|++++|.+... +..+..+++|++|++++|.+
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC--CCSCCCCBCCCEEECTTCEE
T ss_pred HHHHHHHHhcC--chhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc--chhhccCCCCCEEEccCCCc
Confidence 36679888875 34678899998876522 55666 8899999999988654 33466789999999999998
Q ss_pred Ccc-CchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCc-cCCC-CcchhhcCCCCCCEEEccc
Q 047451 123 SGQ-IPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINV-HISS-TVPHTLANLSSLHFLSLSG 199 (778)
Q Consensus 123 ~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~ 199 (778)
.+. +|..+..+++|++|++++|.++ ...+..+..+++|++|++++| .+++ .++..+..+++|++|++++
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~--------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLS--------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCC--------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccC--------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 765 7778888999999999999653 245667888999999999998 5665 3566688889999999999
Q ss_pred C-cCCCC-CChhhcCCC-CCCEEecccCC-CCc-ccCC-CCCCCCCCCEEeccCCc-CCccCcccccCCCCCCeEeccCC
Q 047451 200 C-RLQGE-FPQEIFQLP-NLQFLGVMKNP-NLT-GYLP-QFQKSSPLEDLRLSYTR-FSGKIPSSLGNLTKLEDLYLSGG 272 (778)
Q Consensus 200 n-~l~~~-~~~~l~~l~-~L~~L~L~~n~-~~~-~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~ 272 (778)
| .+++. ++..+..++ +|++|++++|. .++ ..++ .+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 9 88753 566677888 88888888873 122 2222 45567777788887777 66666667777777777777774
Q ss_pred CCCcccCCccccCCCCCCeecccccccCCchhhhccCC-CCCCcccccccccCCCCCc
Q 047451 273 NGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNL-TQLDSLTISDSNFSGPMSS 329 (778)
Q Consensus 273 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~ 329 (778)
..+.......++.+++|+.|++++| +.... +..+ ..++.|++++|.+++..|.
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~---~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPDGT---LQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCTTC---HHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCHHH---HHHHHhhCcceEEecccCccccCC
Confidence 3333333335666777777777776 33221 2222 2355566667766666554
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=8.2e-22 Score=211.12 Aligned_cols=251 Identities=19% Similarity=0.120 Sum_probs=163.9
Q ss_pred eccccCCCC-CCchhcccccccEEeccCCcCCCCCc----hhHHhcCCC-CccEEeccCCccccccCCCCCCC-----CC
Q 047451 366 GLRSCNLSE-FPSFLHNQDQLISLDLSSNMIAGKIP----EWLFSAGTN-SLQYLNLSYNLLMHFEHNLPVLP-----WN 434 (778)
Q Consensus 366 ~L~~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~-----~~ 434 (778)
.++.|.++. +|..+...++|++|++++|.+++..+ ..+. .++ +|++|++++|.+.+..... +.. .+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~ 80 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPA 80 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCT
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHH-HHHHHhccCC
Confidence 344444442 23333333446666666666553333 2222 444 5666666666555443210 111 15
Q ss_pred CCCEEEcCCCcCcCCCCchh------h-cccceeEecCCccccCCchhhhc-----CCcccccccccccccccCChh---
Q 047451 435 NLGALDLRFNKLQGPLPIPI------S-VLTSSYLVSNNQLTGEIPPSICS-----LNGLYALDLSYNNLSGMLPAC--- 499 (778)
Q Consensus 435 ~L~~L~L~~n~l~~~~~~~~------~-~~l~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~--- 499 (778)
+|++|++++|.+++..+..+ . +.+++|++++|.+++..+..+.. .++|++|++++|++++..+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 67777777777766555433 1 56777888888777666655443 368999999999998544433
Q ss_pred -hccccccccEEECCCCcccccCccc----ccCC-CCccEEECCCCcc-------ChhhhhC-CCCCCEEeCCCCcCCCC
Q 047451 500 -LGNFSVQLWVLKLQGNKFHGFIPET----FNKG-TNLRMIDFSNNLL-------VPKSLAN-CVKLKFLDLGDNQITDF 565 (778)
Q Consensus 500 -~~~~~~~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~L~~N~l-------~~~~l~~-l~~L~~L~Ls~N~l~~~ 565 (778)
+...+.+|++|+|++|++++..+.. +..+ ++|++|+|++|.+ ++..+.. .++|++|+|++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 3444437999999999998776643 3445 5999999999998 2455655 46999999999999987
Q ss_pred Cc----ccccCCCCCCEEEccCccccccCCCC-----ccccccCcCcEEEcCCCcCCCCCChH
Q 047451 566 FP----SWLGTLPELEVLILKSNNFHGVIEEP-----NACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 566 ~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
.+ ..+..+++|++|++++|.+.++.+.. ..+..+++|+.||+++|++.+..+..
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 65 34577899999999999955442211 12257889999999999998776654
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=3.6e-22 Score=216.16 Aligned_cols=261 Identities=18% Similarity=0.192 Sum_probs=187.5
Q ss_pred cccCCCCCCchhcccccccEEeccCCcCCCCCchhHH--hcCCCCccEEeccCCccccccCCC---------CCCCCCCC
Q 047451 368 RSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLF--SAGTNSLQYLNLSYNLLMHFEHNL---------PVLPWNNL 436 (778)
Q Consensus 368 ~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~---------~~~~~~~L 436 (778)
....+..++..+..+++|++|++++|.+.+..+..+. ...+++|++|++++|.+..+.... .+..+++|
T Consensus 17 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 17 TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp CSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 3334445666777778888888888877654333321 125678888888887554332211 12456888
Q ss_pred CEEEcCCCcCcCC----CCchh--hcccceeEecCCccccCCchh----hhcC---------Cccccccccccccc-ccC
Q 047451 437 GALDLRFNKLQGP----LPIPI--SVLTSSYLVSNNQLTGEIPPS----ICSL---------NGLYALDLSYNNLS-GML 496 (778)
Q Consensus 437 ~~L~L~~n~l~~~----~~~~~--~~~l~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~Ls~N~l~-~~~ 496 (778)
++|++++|.+++. ++..+ .++|++|++++|.++...+.. +..+ ++|++|++++|+++ +.+
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~ 176 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH
Confidence 8888888888763 33333 678889999999887544433 3344 89999999999997 334
Q ss_pred C---hhhccccccccEEECCCCcccc-----cCcccccCCCCccEEECCCCcc-------ChhhhhCCCCCCEEeCCCCc
Q 047451 497 P---ACLGNFSVQLWVLKLQGNKFHG-----FIPETFNKGTNLRMIDFSNNLL-------VPKSLANCVKLKFLDLGDNQ 561 (778)
Q Consensus 497 ~---~~~~~~~~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l-------~~~~l~~l~~L~~L~Ls~N~ 561 (778)
+ ..+..++ +|++|++++|.++. ..+..+..+++|+.|+|++|.+ +|..+..+++|++|+|++|+
T Consensus 177 ~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 177 KEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 4 3556666 79999999999983 3444788999999999999998 57788999999999999999
Q ss_pred CCCC----Cccccc--CCCCCCEEEccCccccc----cCCCCccccccCcCcEEEcCCCcCCCCCC--hHHHhccccccc
Q 047451 562 ITDF----FPSWLG--TLPELEVLILKSNNFHG----VIEEPNACFEFVKLRIIDLSHNRFAGNLP--SKHFECWNAMKD 629 (778)
Q Consensus 562 l~~~----~~~~~~--~l~~L~~L~Ls~N~l~~----~~~~~~~~~~l~~L~~L~ls~N~l~~~ip--~~~~~~~~~l~~ 629 (778)
+++. ++.++. .+++|++|+|++|.+++ .++..+ ..++++|++|++++|++++..| ..+...+..++.
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence 9876 456664 38999999999999987 233332 1457999999999999997775 444444555543
Q ss_pred c
Q 047451 630 V 630 (778)
Q Consensus 630 l 630 (778)
.
T Consensus 335 ~ 335 (386)
T 2ca6_A 335 G 335 (386)
T ss_dssp C
T ss_pred c
Confidence 3
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.2e-21 Score=192.85 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=91.7
Q ss_pred hhcccceeEecCCccccCCchhhhcCCccccccccccc-ccccCChhhccccccccEEECCC-CcccccCcccccCCCCc
Q 047451 454 ISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNN-LSGMLPACLGNFSVQLWVLKLQG-NKFHGFIPETFNKGTNL 531 (778)
Q Consensus 454 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L 531 (778)
++..++++++++|++++..+..|.++++|++|++++|+ +++..+..+..++ +|++|++++ |.+++..+..|.++++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 34455555555555555555566666666666776665 6544444555555 566666666 66666555666666666
Q ss_pred cEEECCCCcc--ChhhhhCCCCCC---EEeCCCC-cCCCCCcccccCCCCCC-EEEccCccccccCCCCccccccCcCcE
Q 047451 532 RMIDFSNNLL--VPKSLANCVKLK---FLDLGDN-QITDFFPSWLGTLPELE-VLILKSNNFHGVIEEPNACFEFVKLRI 604 (778)
Q Consensus 532 ~~L~L~~N~l--~~~~l~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~~~l~~L~~ 604 (778)
++|++++|++ +|. +..+++|+ +|++++| +++++.+..|.++++|+ +|++++|+++.+.+..+ .. ++|+.
T Consensus 108 ~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~--~~-~~L~~ 183 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF--NG-TKLDA 183 (239)
T ss_dssp CEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT--TT-CEEEE
T ss_pred CEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhc--CC-CCCCE
Confidence 6666666666 444 55555555 6666666 66665555566666666 66666666664433322 22 56666
Q ss_pred EEcCCCc-CC
Q 047451 605 IDLSHNR-FA 613 (778)
Q Consensus 605 L~ls~N~-l~ 613 (778)
|++++|+ ++
T Consensus 184 L~L~~n~~l~ 193 (239)
T 2xwt_C 184 VYLNKNKYLT 193 (239)
T ss_dssp EECTTCTTCC
T ss_pred EEcCCCCCcc
Confidence 6666663 55
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=3.4e-21 Score=206.28 Aligned_cols=258 Identities=18% Similarity=0.144 Sum_probs=130.1
Q ss_pred EEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCc----hhhcCCC-CCCEEECCCCCCCccCchhhhCC-----
Q 047451 64 LDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIP----SEILNFS-RLTHLNLSRSYFSGQIPAELLEL----- 133 (778)
Q Consensus 64 L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l----- 133 (778)
.+++.+.+.|.++. .+...++|++|+|++|.+... .+ ..+..++ +|++|+|++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHH--HHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 45666666665543 333344466666666666443 22 4455566 66666666666665555555543
Q ss_pred CCCCEEECcCCCCCcccccccCCchhHHhhcC-CCCCEEEccCccCCCCcchhhc----C-CCCCCEEEcccCcCCCCCC
Q 047451 134 SNLEVLDLSFNTFDNFFLKLQKPGLANLAENL-TNLKALDLINVHISSTVPHTLA----N-LSSLHFLSLSGCRLQGEFP 207 (778)
Q Consensus 134 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~----~-l~~L~~L~Ls~n~l~~~~~ 207 (778)
++|++|++++|.++.... ..+...+..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSS----DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp TTCCEEECCSSCGGGSCH----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred CCccEEECcCCcCChHHH----HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 666666666665533211 1122234444 5666666666666555444332 2 2466666666666553222
Q ss_pred ----hhhcCCC-CCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccc----cCC-CCCCeEeccCCCCCcc
Q 047451 208 ----QEIFQLP-NLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSL----GNL-TKLEDLYLSGGNGFSN 277 (778)
Q Consensus 208 ----~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~~n~l~~ 277 (778)
..+..++ +|++|++++ |.+++..+..+ ..+ ++|++|++++ |.+++
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~------------------------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~ 210 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRG------------------------NNLASKNCAELAKFLASIPASVTSLDLSA-NLLGL 210 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTT------------------------SCGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGG
T ss_pred HHHHHHHhcCCccccEeeecC------------------------CCCchhhHHHHHHHHHhCCCCCCEEECCC-CCCCh
Confidence 2223333 455555554 44443333222 222 3555555554 44443
Q ss_pred c----CCccccC-CCCCCeecccccccCCchh----hhccCCCCCCcccccccccCCCCCcchh----hhcCCCCCcEEe
Q 047451 278 E----LPPSIGN-LASLKTLEISSFNFSGTLQ----ASLGNLTQLDSLTISDSNFSGPMSSSLS----WLTNLNQLTSLN 344 (778)
Q Consensus 278 ~----~~~~l~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~l~~L~~L~ 344 (778)
. ++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+. .+..+++|+.|+
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 2 1222322 2356666666665554322 2334556666666666664443332211 234556666777
Q ss_pred cCCCCCCcC
Q 047451 345 FPNCNLNEP 353 (778)
Q Consensus 345 l~~n~l~~~ 353 (778)
+++|.+...
T Consensus 291 L~~N~l~~~ 299 (362)
T 3goz_A 291 KNGKEIHPS 299 (362)
T ss_dssp TTSCBCCGG
T ss_pred cCCCcCCCc
Confidence 777766554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.6e-20 Score=193.28 Aligned_cols=130 Identities=32% Similarity=0.442 Sum_probs=70.8
Q ss_pred hhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCC
Q 047451 476 ICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLK 553 (778)
Q Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~ 553 (778)
+..+++|++|++++|++++ ++. +..++ +|++|++++|.+++..+ +..+++|+.|++++|++ .+. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VTP-LAGLS-NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CGG-GTTCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCCCCC-chh-hcCCC-CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCC
Confidence 4444555555555555543 221 44444 45555555555554322 55555555555555555 222 55666666
Q ss_pred EEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCCh
Q 047451 554 FLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPS 618 (778)
Q Consensus 554 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~ 618 (778)
+|++++|++++..+ +..+++|+.|++++|++++..+ + ..+++|+.|++++|+++ ..|.
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l--~~l~~L~~L~l~~N~i~-~~~~ 234 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L--ANTSNLFIVTLTNQTIT-NQPV 234 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--G--TTCTTCCEEEEEEEEEE-CCCE
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--c--cCCCCCCEEEccCCeee-cCCe
Confidence 66666666665433 5566666666666666665542 2 45666666666666665 3443
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=5.7e-20 Score=185.96 Aligned_cols=189 Identities=24% Similarity=0.284 Sum_probs=121.0
Q ss_pred CCCccCceeeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCc
Q 047451 45 DCCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSG 124 (778)
Q Consensus 45 ~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 124 (778)
+||.|.|..|.. ..++++++++.+.. ++. .+. +++++|+|++|.+... .+..+.++++|++|+|++|.+.+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence 588999999963 34468888887763 333 333 5788888888887654 45667888888888888888887
Q ss_pred cCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCC
Q 047451 125 QIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQG 204 (778)
Q Consensus 125 ~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 204 (778)
..+..|..+++|++|++++|.|+.+ .+..+..+++|++|++++|++++..+..|..+++|++|++++|++++
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLASL--------PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCHhHhccCCcCCEEECCCCccccc--------ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 7777778888888888888865432 23345566667777777766666555556666666666666666664
Q ss_pred CCChhhcCCCCCCEEecccCCCCcccCC-CCCCCCCCCEEeccCCcCC
Q 047451 205 EFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSSPLEDLRLSYTRFS 251 (778)
Q Consensus 205 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~ 251 (778)
..+..+..+++|++|++++| .+....+ .+..+++|+.|++++|.++
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 44445555555555555555 3332222 3444444444444444443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.4e-21 Score=207.34 Aligned_cols=260 Identities=23% Similarity=0.317 Sum_probs=204.3
Q ss_pred CCCCCCCCCCCCCCCccCceeeCCC-----------CCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCC
Q 047451 33 KVASWKLDEKNSDCCLWDGVKCNED-----------TGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSE 101 (778)
Q Consensus 33 ~~~~W~~~~~~~~~c~w~~v~c~~~-----------~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 101 (778)
+.+.|+.. ..+...|..+..... ..+++.++++++.+.+..+ .+..+++|++|++++|.+....
T Consensus 35 vc~~W~~~--~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~---~~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 35 VCKRWYRL--ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLA---EHFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp SCHHHHHH--HTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCC---SCCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHH--hcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccccch---hhccCCCCCEEEccCCCcCHHH
Confidence 45566642 223445766654432 1679999999999887765 4668999999999999876444
Q ss_pred CchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCC-CCCcccccccCCchhHHhhcCCCCCEEEccCc-cCC
Q 047451 102 IPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFN-TFDNFFLKLQKPGLANLAENLTNLKALDLINV-HIS 179 (778)
Q Consensus 102 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n-~l~ 179 (778)
++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++ ..++..+.++++|++|++++| .++
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~-------~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE-------FALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH-------HHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH-------HHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 6788999999999999999999888999999999999999999 4432 246778899999999999999 888
Q ss_pred CC-cchhhcCCC-CCCEEEcccC--cCC-CCCChhhcCCCCCCEEecccCCCCcc-cCCCCCCCCCCCEEeccCCc-CCc
Q 047451 180 ST-VPHTLANLS-SLHFLSLSGC--RLQ-GEFPQEIFQLPNLQFLGVMKNPNLTG-YLPQFQKSSPLEDLRLSYTR-FSG 252 (778)
Q Consensus 180 ~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~L~~n~-l~~ 252 (778)
+. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|..++. ..+.+..+++|++|++++|. +..
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 64 577788999 9999999999 455 35677788999999999999953554 34478889999999999995 433
Q ss_pred cCcccccCCCCCCeEeccCCCCCcccCCccccCC-CCCCeecccccccCCchhhhccC
Q 047451 253 KIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNL-ASLKTLEISSFNFSGTLQASLGN 309 (778)
Q Consensus 253 ~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~ 309 (778)
.....+..+++|++|++++ + ++. ..+..+ ..++.|++++|.+++..|..+++
T Consensus 263 ~~~~~l~~~~~L~~L~l~~-~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFG-I-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGGGGCTTCCEEECTT-S-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHHhcCCCCCEEeccC-c-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 3334678899999999998 4 332 234444 34888889999999988877664
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=2.4e-21 Score=209.66 Aligned_cols=241 Identities=20% Similarity=0.236 Sum_probs=128.2
Q ss_pred ccccCCCCCEEeCCCCCCCCCC---CchhhcCCCCCCEEECCCC---CCCccCchhh-------hCCCCCCEEECcCCCC
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSE---IPSEILNFSRLTHLNLSRS---YFSGQIPAEL-------LELSNLEVLDLSFNTF 146 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~n~i 146 (778)
.+..+++|++|+|++|.+.... ++..+..+++|++|+|++| ++.+.+|..+ ..+++|++|+|++|.|
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 4556667777777777664321 1223556677777777764 3334445444 5667777777777755
Q ss_pred CcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhhc----CC---------CCCCEEEcccCcCC-CCCC---hh
Q 047451 147 DNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLA----NL---------SSLHFLSLSGCRLQ-GEFP---QE 209 (778)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l---------~~L~~L~Ls~n~l~-~~~~---~~ 209 (778)
+.... ..++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+++ ..++ ..
T Consensus 107 ~~~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 107 GPTAQ----EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CTTTH----HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CHHHH----HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 33110 13555666677777777777766543333332 22 66777777776665 2223 34
Q ss_pred hcCCCCCCEEecccCCCCcc-----cCC-CCCCCCCCCEEeccCCcCC----ccCcccccCCCCCCeEeccCCCCCccc-
Q 047451 210 IFQLPNLQFLGVMKNPNLTG-----YLP-QFQKSSPLEDLRLSYTRFS----GKIPSSLGNLTKLEDLYLSGGNGFSNE- 278 (778)
Q Consensus 210 l~~l~~L~~L~L~~n~~~~~-----~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~~n~l~~~- 278 (778)
+..+++|++|++++| .+.. ..+ .+..+++|+.|++++|.++ ..+|..+..+++|++|++++ |.+++.
T Consensus 183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~-n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND-CLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT-CCCCHHH
T ss_pred HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC-CCCchhh
Confidence 555666666666666 3331 122 4455555666666666553 34444555555555555555 444433
Q ss_pred ---CCcccc--CCCCCCeecccccccCC----chhhhc-cCCCCCCcccccccccCCC
Q 047451 279 ---LPPSIG--NLASLKTLEISSFNFSG----TLQASL-GNLTQLDSLTISDSNFSGP 326 (778)
Q Consensus 279 ---~~~~l~--~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~L~~n~l~~~ 326 (778)
++..+. .+++|+.|++++|.+++ .+|..+ .++++|++|++++|.+++.
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 233332 24555555555555554 234333 3345555555555555443
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=2.7e-20 Score=186.97 Aligned_cols=203 Identities=17% Similarity=0.175 Sum_probs=113.3
Q ss_pred CCCCCchhcccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCc-cccccCCCCCCCCCCCCEEEcCC-CcCcCC
Q 047451 372 LSEFPSFLHNQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNL-LMHFEHNLPVLPWNNLGALDLRF-NKLQGP 449 (778)
Q Consensus 372 l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~ 449 (778)
++++|. + .+++++|++++|++++..+..+. .+++|++|++++|. ++.+... .+..+++|++|++++ |+
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~---- 92 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRN---- 92 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETT----
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCC----
Confidence 555554 2 23566666666666533332332 44555555555553 4433322 223334444444443 33
Q ss_pred CCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhcccccccc---EEECCCC-cccccCcccc
Q 047451 450 LPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLW---VLKLQGN-KFHGFIPETF 525 (778)
Q Consensus 450 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~---~L~Ls~n-~l~~~~~~~~ 525 (778)
+++..+..|.++++|++|++++|++++ +|. +..+. +|+ +|++++| .+++..+..|
T Consensus 93 ------------------l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 93 ------------------LTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY-STDIFFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp ------------------CCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTT
T ss_pred ------------------eeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc-ccccccEEECCCCcchhhcCcccc
Confidence 333344456666777777777777664 454 55554 465 7777777 6666666666
Q ss_pred cCCCCcc-EEECCCCcc--ChhhhhCCCCCCEEeCCCCc-CCCCCcccccCC-CCCCEEEccCccccccCCCCccccccC
Q 047451 526 NKGTNLR-MIDFSNNLL--VPKSLANCVKLKFLDLGDNQ-ITDFFPSWLGTL-PELEVLILKSNNFHGVIEEPNACFEFV 600 (778)
Q Consensus 526 ~~l~~L~-~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 600 (778)
.++++|+ +|++++|++ +|......++|++|++++|+ ++++.+..|.++ ++|+.|++++|+++++.+. .++
T Consensus 152 ~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-----~~~ 226 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-----GLE 226 (239)
T ss_dssp TTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-----TCT
T ss_pred cchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-----Hhc
Confidence 6666666 677766666 33332223666777777774 666666666666 6677777777766654322 355
Q ss_pred cCcEEEcCCC
Q 047451 601 KLRIIDLSHN 610 (778)
Q Consensus 601 ~L~~L~ls~N 610 (778)
+|+.|+++++
T Consensus 227 ~L~~L~l~~~ 236 (239)
T 2xwt_C 227 HLKELIARNT 236 (239)
T ss_dssp TCSEEECTTC
T ss_pred cCceeeccCc
Confidence 6666666654
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.8e-19 Score=188.11 Aligned_cols=196 Identities=23% Similarity=0.344 Sum_probs=120.5
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchh
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLA 159 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~ 159 (778)
.+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++.+ +
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~---------~ 101 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV---------S 101 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC---------G
T ss_pred cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc---------h
Confidence 45567788888888887754 34 577788888888888888743 43 78888888888888866432 2
Q ss_pred HHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCC
Q 047451 160 NLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSP 239 (778)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 239 (778)
.+..+++|++|++++|++++.. .+..+++|++|++++|.+++. +. +..+++|+.|++++| .++...+ +..+++
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~ 174 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSK 174 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTT
T ss_pred -hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCC-cCCCChh-hcCCCC
Confidence 4667777777777777776643 277777777777777777633 22 556666666666665 3332222 444555
Q ss_pred CCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccc
Q 047451 240 LEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTIS 319 (778)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (778)
|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 175 L~~L~l~~n~l~~~~~---------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 175 LTTLKADDNKISDISP---------------------------LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp CCEEECCSSCCCCCGG---------------------------GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred CCEEECCCCccCcChh---------------------------hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 5555555555443222 4444455555555555543332 4555555555555
Q ss_pred ccccCC
Q 047451 320 DSNFSG 325 (778)
Q Consensus 320 ~n~l~~ 325 (778)
+|.+++
T Consensus 226 ~N~i~~ 231 (308)
T 1h6u_A 226 NQTITN 231 (308)
T ss_dssp EEEEEC
T ss_pred CCeeec
Confidence 555543
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8e-20 Score=179.23 Aligned_cols=106 Identities=21% Similarity=0.306 Sum_probs=62.3
Q ss_pred cccEEECCCCcccccCcccccCCCCccEEECCCCcc--C-hhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEcc
Q 047451 506 QLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--V-PKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILK 582 (778)
Q Consensus 506 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 582 (778)
+|++|++++|.+++..+..|..+++|++|++++|++ + +..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555555444555555556666655555 2 2334556666666666666666555556666666666666
Q ss_pred CccccccCCCCccccccCcCcEEEcCCCcCC
Q 047451 583 SNNFHGVIEEPNACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 583 ~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~ 613 (778)
+|++++..+..+ ..+++|++|++++|+++
T Consensus 109 ~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 109 TNQLQSLPDGVF--DKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp SSCCCCCCTTTT--TTCTTCCEEECCSSCCS
T ss_pred CCcCcccCHhHh--ccCCcCCEEECCCCccc
Confidence 666665544333 45666666666666665
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=8.2e-20 Score=191.11 Aligned_cols=235 Identities=18% Similarity=0.134 Sum_probs=127.0
Q ss_pred CCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhh--cCCCCCCEEEcccCcCCCCCChhh
Q 047451 133 LSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL--ANLSSLHFLSLSGCRLQGEFPQEI 210 (778)
Q Consensus 133 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~l 210 (778)
-..++.+.+.++.+++..+. .+.. +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+..-
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~----~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~ 137 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLV----GALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA 137 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHH----HHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH
T ss_pred hcceeEEEEeCCcCCHHHHH----HHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH
Confidence 34688888888865432111 1111 2234567778887777777777666 677777777777777764333100
Q ss_pred cCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCccc----CCccccCC
Q 047451 211 FQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNE----LPPSIGNL 286 (778)
Q Consensus 211 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~----~~~~l~~l 286 (778)
. ..+..+++|++|++++|.+++..+..+..+++|++|++++ |.+.+. .+..+..+
T Consensus 138 ~--------------------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 138 E--------------------LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSD-NPGLGERGLMAALCPHKF 196 (310)
T ss_dssp H--------------------HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCS-CTTCHHHHHHTTSCTTSS
T ss_pred H--------------------HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCC-CCCccchhhhHHHhhhcC
Confidence 0 0112344555555555555555555666666666666665 544321 12223566
Q ss_pred CCCCeecccccccCCchh--h-hccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcCCCCCCCcccc
Q 047451 287 ASLKTLEISSFNFSGTLQ--A-SLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEPLLVPNTQKFE 363 (778)
Q Consensus 287 ~~L~~L~L~~n~l~~~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~ 363 (778)
++|++|++++|.++...+ . .+..+++|++|++++|.+.+..|..+..+..+++|++|++++|+++. ++....++|+
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~L~ 275 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLPAKLR 275 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCCSCCS
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhcCCCC
Confidence 777777777777753211 1 24566777777777777777655532222223456666665555552 2222224444
Q ss_pred eeeccccCCCCCCchhcccccccEEeccCCcC
Q 047451 364 IIGLRSCNLSEFPSFLHNQDQLISLDLSSNMI 395 (778)
Q Consensus 364 ~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l 395 (778)
+|++++|+++.+|. +..+++|++|++++|++
T Consensus 276 ~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 276 VLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred EEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 44444444444432 33444444444444444
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.5e-19 Score=174.67 Aligned_cols=154 Identities=25% Similarity=0.295 Sum_probs=128.9
Q ss_pred cceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECC
Q 047451 458 TSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFS 537 (778)
Q Consensus 458 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 537 (778)
-+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 356778888877 345433 45899999999999966666677777 79999999999998877788999999999999
Q ss_pred CCcc--C-hhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCC
Q 047451 538 NNLL--V-PKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAG 614 (778)
Q Consensus 538 ~N~l--~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~ 614 (778)
+|++ + +..+..+++|++|++++|++++..+..|..+++|++|++++|+++++.+..+ ..+++|++|++++|++.|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF--DRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSCCBCC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh--ccCCCccEEEecCCCeec
Confidence 9998 3 4557899999999999999999888889999999999999999998766545 678999999999998886
Q ss_pred CCC
Q 047451 615 NLP 617 (778)
Q Consensus 615 ~ip 617 (778)
.+|
T Consensus 163 ~~~ 165 (208)
T 2o6s_A 163 TCP 165 (208)
T ss_dssp CTT
T ss_pred CCC
Confidence 555
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=5.2e-19 Score=174.69 Aligned_cols=159 Identities=19% Similarity=0.296 Sum_probs=131.9
Q ss_pred eeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCC
Q 047451 460 SYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNN 539 (778)
Q Consensus 460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 539 (778)
.++++++.++ .+|..+. +++++|++++|++++..+..+..++ +|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3444444444 3444332 5788888888888866666777777 7999999999998888888999999999999999
Q ss_pred cc--Ch-hhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCC
Q 047451 540 LL--VP-KSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNL 616 (778)
Q Consensus 540 ~l--~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~i 616 (778)
++ +| ..|.++++|++|+|++|+++++.+..|..+++|++|+|++|+++++.+..+ ..+++|++|++++|++.|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCC
Confidence 88 44 457889999999999999999999999999999999999999998877655 78999999999999999999
Q ss_pred ChHHHhcc
Q 047451 617 PSKHFECW 624 (778)
Q Consensus 617 p~~~~~~~ 624 (778)
+..|+..|
T Consensus 169 ~l~~l~~~ 176 (220)
T 2v9t_B 169 HLKWLADY 176 (220)
T ss_dssp GGHHHHHH
T ss_pred ccHHHHHH
Confidence 98888766
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=173.77 Aligned_cols=161 Identities=22% Similarity=0.213 Sum_probs=130.9
Q ss_pred eeEecCCccccCCchhhhcCCcccccccccccccccCC-hhhccccccccEEECCCCcccccCcccccCCCCccEEECCC
Q 047451 460 SYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLP-ACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSN 538 (778)
Q Consensus 460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 538 (778)
.+++++|.++ .+|..+. ..+++|++++|++++..+ ..+..++ +|++|++++|.+++..+..|.++++|++|+|++
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4444444444 3444332 345788888888876544 3466666 688899998888888888888899999999999
Q ss_pred Ccc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCC
Q 047451 539 NLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGN 615 (778)
Q Consensus 539 N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ 615 (778)
|++ .+..|.++++|++|+|++|+++++.|..|.++++|++|+|++|++++..+..+ ..+++|++|++++|+++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCC
Confidence 988 45668899999999999999999999999999999999999999999887776 7899999999999999999
Q ss_pred CChHHHhcccc
Q 047451 616 LPSKHFECWNA 626 (778)
Q Consensus 616 ip~~~~~~~~~ 626 (778)
++..++..|..
T Consensus 169 c~l~~l~~~~~ 179 (220)
T 2v70_A 169 CYLAWLGEWLR 179 (220)
T ss_dssp GGGHHHHHHHH
T ss_pred CchHHHHHHHH
Confidence 99888877653
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=9.5e-19 Score=186.26 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=95.4
Q ss_pred ceeeccccCCCCCCchhcccccccEEeccCCcCCCCCch-hHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCE-EE
Q 047451 363 EIIGLRSCNLSEFPSFLHNQDQLISLDLSSNMIAGKIPE-WLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGA-LD 440 (778)
Q Consensus 363 ~~L~L~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~-L~ 440 (778)
+.++.++++++++|..+ .+++++|+|++|+|+ .+|. .|. ++++|++|++++|.+.+..+...+..++++.. +.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 45666666677676544 346677777777766 4443 333 56666666666666554443334444455443 33
Q ss_pred cCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCC-Ccccc
Q 047451 441 LRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQG-NKFHG 519 (778)
Q Consensus 441 L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~-n~l~~ 519 (778)
+..|++++ ..|..|..+++|++|++++|++.+..+..+.... ++..|++.+ +.+..
T Consensus 87 ~~~N~l~~----------------------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 87 EKANNLLY----------------------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNINIHT 143 (350)
T ss_dssp EEETTCCE----------------------ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-SCEEEEEESCTTCCE
T ss_pred ccCCcccc----------------------cCchhhhhccccccccccccccccCCchhhcccc-hhhhhhhcccccccc
Confidence 34444443 3334444444455555555544433332333332 344444432 33443
Q ss_pred cCcccccCCC-CccEEECCCCcc--ChhhhhCCCCCCEEeCCC-CcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 520 FIPETFNKGT-NLRMIDFSNNLL--VPKSLANCVKLKFLDLGD-NQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 520 ~~~~~~~~l~-~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
..+..|..+. .++.|++++|+| ++.......+|++|++++ |.++.+.+++|.++++|++|++++|+|+.+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 3333444432 344455555544 333333334445555442 344444344445555555555555554433
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.2e-18 Score=195.15 Aligned_cols=173 Identities=24% Similarity=0.306 Sum_probs=122.6
Q ss_pred CcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeC
Q 047451 480 NGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDL 557 (778)
Q Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~L 557 (778)
++|++|++++|+++ .+| ..++ +|++|++++|.+++ +|. +.. +|++|++++|++ +|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~-~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPA-SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCT-TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccC-CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeC
Confidence 45677777777766 455 2233 67777777777775 444 444 777777777777 555 5788888888
Q ss_pred CCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccccccccccCCccc
Q 047451 558 GDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDVNANNLTY 637 (778)
Q Consensus 558 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~ 637 (778)
++|+++++ |. .+++|++|+|++|+++++ |. + . ++|+.|++++|.|+ .+|. |.. .|
T Consensus 148 s~N~l~~l-p~---~l~~L~~L~Ls~N~L~~l-p~-l--~--~~L~~L~Ls~N~L~-~lp~--~~~--~L---------- 202 (571)
T 3cvr_A 148 DNNQLTML-PE---LPTSLEVLSVRNNQLTFL-PE-L--P--ESLEALDVSTNLLE-SLPA--VPV--RN---------- 202 (571)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC-C--C--TTCCEEECCSSCCS-SCCC--CC---------------
T ss_pred CCCccCcC-CC---cCCCcCEEECCCCCCCCc-ch-h--h--CCCCEEECcCCCCC-chhh--HHH--hh----------
Confidence 88888874 33 567888888888888874 33 4 3 78888888888888 6774 211 00
Q ss_pred ccccCCCCCCCCCccccccccceeeeecCCchhhHhhhcccccEEEccCCcccccCchhccCCCCCCeecCCCCcccccc
Q 047451 638 LQDSLLGPVSYPAYTHYGFSDYSLTLSNKGTEMEYEKLSNLITATILSNNSFVGEIPTSISNLKGLRTLNLSNNNLQVFL 717 (778)
Q Consensus 638 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~p~~~~~l~~l~~l~ls~n~l~~~~ 717 (778)
. ...+.++.|++++|+|+ .+|..+..+++|+.|++++|+++|.+
T Consensus 203 -~----------------------------------~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 203 -H----------------------------------HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp ----------------------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred -h----------------------------------cccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 0 00234688899999998 57877888999999999999999999
Q ss_pred chhhhccc
Q 047451 718 SPFFIDFF 725 (778)
Q Consensus 718 p~~~~~~~ 725 (778)
|..++.+.
T Consensus 247 p~~l~~l~ 254 (571)
T 3cvr_A 247 RESLSQQT 254 (571)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 98877654
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.1e-18 Score=185.89 Aligned_cols=223 Identities=18% Similarity=0.123 Sum_probs=136.5
Q ss_pred CCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCE-EEccCccCCCCcchhhcC
Q 047451 110 SRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKA-LDLINVHISSTVPHTLAN 188 (778)
Q Consensus 110 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~ 188 (778)
+++++|+|++|+|+...+.+|.++++|++|+|++|+|... .-+..|.+++++++ +.++.|+++...|..|..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-------i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-------IEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE-------ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc-------cChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 3455666666666533334556666666666666654221 01123455555554 344556666666777778
Q ss_pred CCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCC-CCCCCC-CCCEEeccCCcCCccCcccccCCCCCCe
Q 047451 189 LSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLP-QFQKSS-PLEDLRLSYTRFSGKIPSSLGNLTKLED 266 (778)
Q Consensus 189 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 266 (778)
+++|++|++++|+++...+..+....++..+++.++..+....+ .|..+. .++.|++++|+++...+. .....+|++
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~ 181 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDE 181 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhH
Confidence 88888888888887755555566666777777766534433333 555553 577888888888744333 334567888
Q ss_pred EeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCcccccccccCCCCCcchhhhcCCCCCcEEecC
Q 047451 267 LYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTISDSNFSGPMSSSLSWLTNLNQLTSLNFP 346 (778)
Q Consensus 267 L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~ 346 (778)
+++.++|.++...+..|..+++|+.|++++|+++...+..+.++++|+.++..+ -...| .+..+++|+.+++.
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~---l~~lP----~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLP----TLEKLVALMEASLT 254 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT---CCCCC----CTTTCCSCCEEECS
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC---cCcCC----CchhCcChhhCcCC
Confidence 888765666665556778888888888888888765555555555555444422 22333 35566777777765
Q ss_pred C
Q 047451 347 N 347 (778)
Q Consensus 347 ~ 347 (778)
+
T Consensus 255 ~ 255 (350)
T 4ay9_X 255 Y 255 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=6.4e-19 Score=188.38 Aligned_cols=180 Identities=22% Similarity=0.204 Sum_probs=147.1
Q ss_pred CEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhh-cCCcccccccccccccccCChhhccccccccEEECCCC
Q 047451 437 GALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSIC-SLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGN 515 (778)
Q Consensus 437 ~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n 515 (778)
+.++++++.++. +|..++..++.|++++|++++..+..+. .+++|++|+|++|++++..+..|..++ +|++|+|++|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCC
Confidence 355666665554 3444455666777777777766667777 899999999999999977777888888 7999999999
Q ss_pred cccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccc---cCCCCCCEEEccCcccccc
Q 047451 516 KFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWL---GTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 516 ~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~ 589 (778)
+++...+..|.++++|++|+|++|++ .+..|.++++|+.|+|++|+++++.+..| ..+++|+.|+|++|+|+++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 99988888999999999999999999 57889999999999999999999877777 5799999999999999976
Q ss_pred CCCCccccccCc--CcEEEcCCCcCCCCCChHH
Q 047451 590 IEEPNACFEFVK--LRIIDLSHNRFAGNLPSKH 620 (778)
Q Consensus 590 ~~~~~~~~~l~~--L~~L~ls~N~l~~~ip~~~ 620 (778)
.+..+ ..++. ++.|++++|++.|.+...+
T Consensus 179 ~~~~~--~~l~~~~l~~l~l~~N~~~C~C~l~~ 209 (361)
T 2xot_A 179 PLTDL--QKLPAWVKNGLYLHNNPLECDCKLYQ 209 (361)
T ss_dssp CHHHH--HHSCHHHHTTEECCSSCEECCHHHHH
T ss_pred CHHHh--hhccHhhcceEEecCCCccCCcCcHH
Confidence 54433 56665 4889999999999887544
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=9e-18 Score=166.97 Aligned_cols=158 Identities=20% Similarity=0.245 Sum_probs=121.8
Q ss_pred eeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCC
Q 047451 460 SYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNN 539 (778)
Q Consensus 460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 539 (778)
.++.+++.++ .+|..+. ++|++|++++|++++..|..+..++ +|++|+|++|+++...+..|..+++|++|+|++|
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3444444443 3444332 6788888888888877677777777 6888888888887776677788888888888888
Q ss_pred cc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCC
Q 047451 540 LL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNL 616 (778)
Q Consensus 540 ~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~i 616 (778)
++ .+..|..+++|++|+|++|+++. +|..+..+++|++|+|++|+++++.+..+ ..+++|+.|++++|+++|.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccCCc
Confidence 88 34557889999999999999985 47778999999999999999998766555 78899999999999999988
Q ss_pred C-hHHHhcc
Q 047451 617 P-SKHFECW 624 (778)
Q Consensus 617 p-~~~~~~~ 624 (778)
+ ..++..|
T Consensus 176 ~~~~~l~~~ 184 (229)
T 3e6j_A 176 RDIMYLRNW 184 (229)
T ss_dssp GGGHHHHHH
T ss_pred chhHHHHHH
Confidence 7 4444444
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=6.2e-18 Score=180.68 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=75.3
Q ss_pred cccccccccccccCChhhccccccccEEECCCCcccccCccccc-CCCCccEEECCCCcc---ChhhhhCCCCCCEEeCC
Q 047451 483 YALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFN-KGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLG 558 (778)
Q Consensus 483 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls 558 (778)
+.+++++++++ .+|..+. ..++.|+|++|.|++..+..|. ++++|++|+|++|++ .+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555555 3444332 1455666666666655555555 566666666666665 33456666666666666
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 559 DNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 559 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
+|+++.+.+..|.++++|++|+|++|+|+++.+..+ ..+++|+.|+|++|+++ .+|..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~l~~~ 154 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS-RFPVE 154 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC-SCCGG
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC-eeCHH
Confidence 666666555556666666666666666665554444 55666666666666665 45543
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=5.3e-18 Score=189.77 Aligned_cols=212 Identities=20% Similarity=0.233 Sum_probs=138.0
Q ss_pred CCCCCCCCCCCCCCC-----ccCce-eeCCCCCcEEEEEcCCCCCccccCCccccccCCCCCEEeCCCCCCCCCCCchhh
Q 047451 33 KVASWKLDEKNSDCC-----LWDGV-KCNEDTGHVVELDLASSCLYGSVNSTSSLFQLVHLQRLSLFDNNFNFSEIPSEI 106 (778)
Q Consensus 33 ~~~~W~~~~~~~~~c-----~w~~v-~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 106 (778)
...+|.. ..+.| .|.++ .|.. ++++.|+++++.+.+ ++. .+ +++|++|+|++|.+. .+|
T Consensus 32 ~l~~W~~---~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~--~ip--- 96 (571)
T 3cvr_A 32 AWDKWEK---QALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALI--SLP--- 96 (571)
T ss_dssp HHHHHHT---TCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCS--CCC---
T ss_pred HHHHHhc---cCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCc--ccc---
Confidence 3556754 34556 68888 6753 478999999998876 544 34 378999999999886 366
Q ss_pred cCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhh
Q 047451 107 LNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL 186 (778)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 186 (778)
..+++|++|++++|.+++ +|. +.. +|++|++++|.|+. +|. .+++|++|++++|.+++ +|.
T Consensus 97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~Ls~N~l~~-lp~-- 157 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM---------LPE---LPALLEYINADNNQLTM-LPE-- 157 (571)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC---------CCC---CCTTCCEEECCSSCCSC-CCC--
T ss_pred cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC---------CCC---cCccccEEeCCCCccCc-CCC--
Confidence 457888999999998885 666 555 88888888887643 233 46777777777777765 333
Q ss_pred cCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCCCEEeccCCcCCccCcccccC-----C
Q 047451 187 ANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPLEDLRLSYTRFSGKIPSSLGN-----L 261 (778)
Q Consensus 187 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l 261 (778)
.+++|++|++++|.+++ +|. +. ++|+.|++++| .++ .+|. +.. .
T Consensus 158 -~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N------------------------~L~-~lp~-~~~~L~~~~ 206 (571)
T 3cvr_A 158 -LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN------------------------LLE-SLPA-VPVRNHHSE 206 (571)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS------------------------CCS-SCCC-CC-------
T ss_pred -cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC------------------------CCC-chhh-HHHhhhccc
Confidence 45677777777777764 444 33 55666655555 443 2222 222 1
Q ss_pred CCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCC
Q 047451 262 TKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLT 311 (778)
Q Consensus 262 ~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (778)
+.|+.|++++ |.++. +|..+..+++|+.|++++|.+++.+|..+..++
T Consensus 207 ~~L~~L~Ls~-N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 207 ETEIFFRCRE-NRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CCEEEECCS-SCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ccceEEecCC-Cccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 1226666665 55553 555565677777777777777766666655543
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=164.02 Aligned_cols=150 Identities=23% Similarity=0.271 Sum_probs=127.1
Q ss_pred EEEcCCCcCcCCCCchhhcccceeEecCCccccCCc-hhhhcCCcccccccccccccccCChhhccccccccEEECCCCc
Q 047451 438 ALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIP-PSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNK 516 (778)
Q Consensus 438 ~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~ 516 (778)
.+++++|.++. +|..+...+++|++++|.+++..+ ..|..+++|++|++++|++++..+..+..+. +|++|+|++|.
T Consensus 15 ~l~~s~n~l~~-iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSS-CCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSC
T ss_pred EeEeCCCCccc-CccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCc
Confidence 55666665553 344445556667777777766544 4588999999999999999977777888888 79999999999
Q ss_pred ccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 517 FHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 517 l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
+++..+..|..+++|++|+|++|++ .|..|..+++|++|+|++|++++..|..|..+++|++|++++|++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9998888999999999999999999 578899999999999999999999999999999999999999999864
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=1.3e-17 Score=172.19 Aligned_cols=192 Identities=24% Similarity=0.288 Sum_probs=128.6
Q ss_pred ccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEec
Q 047451 385 LISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVS 464 (778)
Q Consensus 385 L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~ 464 (778)
+..+.+..+.+.+..+.. .+++|+.|++++|.+..+.. +..+++|+.|++++|++++
T Consensus 26 ~~~~~l~~~~~~~~~~~~----~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~---------------- 82 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTD---------------- 82 (291)
T ss_dssp HHHHHTTCSCTTSEECHH----HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCC----------------
T ss_pred HHHHHhcCCCcccccchh----hcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCC----------------
Confidence 344455555554322221 45667777777777666532 4445666666666666553
Q ss_pred CCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-Ch
Q 047451 465 NNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-VP 543 (778)
Q Consensus 465 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~ 543 (778)
++. +..+++|++|++++|++++ ++ .+..++ +|++|++++|.+++. ..+..+++|+.|++++|++ ..
T Consensus 83 -------~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~-~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 83 -------IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp -------CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCT-TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC
T ss_pred -------Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCC-CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc
Confidence 222 6677777777777777764 33 366666 688888888877754 4577777888888888877 33
Q ss_pred hhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 544 KSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 544 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
..+..+++|++|++++|++++..+ +..+++|+.|++++|.++++. .+ ..+++|+.|++++|+++ ..|..
T Consensus 150 ~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l--~~l~~L~~L~l~~n~i~-~~~~~ 218 (291)
T 1h6t_A 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--AL--AGLKNLDVLELFSQECL-NKPIN 218 (291)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GG--TTCTTCSEEEEEEEEEE-CCCEE
T ss_pred hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hh--ccCCCCCEEECcCCccc-CCccc
Confidence 567778888888888888877654 778888888888888887652 22 67788888888888876 35543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.7e-17 Score=168.10 Aligned_cols=169 Identities=24% Similarity=0.310 Sum_probs=105.8
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchh
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLA 159 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~ 159 (778)
.+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++. ++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~ 106 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD---------LS 106 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC---------GG
T ss_pred chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC---------Ch
Confidence 45667788888888887754 33 47778888888888888875433 7788888888888886533 22
Q ss_pred HHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCC
Q 047451 160 NLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSP 239 (778)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 239 (778)
.+..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++| .+....+ +..+++
T Consensus 107 -~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~ 179 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTK 179 (291)
T ss_dssp -GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTT
T ss_pred -hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC-ccccchh-hcCCCc
Confidence 366777777777777777653 3566777777777777777643 45566666666666665 3333222 444555
Q ss_pred CCEEeccCCcCCccCcccccCCCCCCeEeccC
Q 047451 240 LEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSG 271 (778)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 271 (778)
|++|++++|.+++. + .+..+++|+.|++++
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFS 209 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcC
Confidence 55555555555432 1 244444444444444
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=2.7e-17 Score=162.34 Aligned_cols=150 Identities=21% Similarity=0.285 Sum_probs=126.9
Q ss_pred CEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCc
Q 047451 437 GALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNK 516 (778)
Q Consensus 437 ~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~ 516 (778)
+.++++++.++. +|..++..++.|++++|.+++..+..|..+++|++|++++|++++..|..|..++ +|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~-iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSS-CCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSC
T ss_pred CEEEcCCCCcCc-CCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCc
Confidence 345555555543 2334445666677777777766677889999999999999999988888999888 79999999999
Q ss_pred ccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccc
Q 047451 517 FHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHG 588 (778)
Q Consensus 517 l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 588 (778)
++...+..|.++++|++|+|++|++ .|..|..+++|++|+|++|+++++.+..|..+++|+.|+|++|++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9988778899999999999999999 57889999999999999999999988899999999999999999874
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=4.9e-17 Score=161.63 Aligned_cols=151 Identities=23% Similarity=0.281 Sum_probs=126.6
Q ss_pred CEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCc
Q 047451 437 GALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNK 516 (778)
Q Consensus 437 ~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~ 516 (778)
+.++.+++.++ .+|..+++.+++|++++|.+++..|..|..+++|++|++++|++....+..+..++ +|++|+|++|+
T Consensus 22 ~~v~c~~~~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSC
T ss_pred CEeEccCCCcC-ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC-CcCEEECCCCc
Confidence 34555555544 23334456666677777777777788899999999999999999865556677777 79999999999
Q ss_pred ccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 517 FHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 517 l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
+++..+..|..+++|++|+|++|++ +|..+..+++|++|+|++|+++++.+..|..+++|+.|++++|++...
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9988888899999999999999999 888999999999999999999999888899999999999999998754
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.5e-17 Score=188.32 Aligned_cols=193 Identities=23% Similarity=0.273 Sum_probs=128.2
Q ss_pred ccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeE
Q 047451 383 DQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYL 462 (778)
Q Consensus 383 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 462 (778)
..+..+.+..+.+.+..+.. .++.|+.|++++|.+..++ .+..+++|+.|+|++|.+.+.
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~----~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~------------- 80 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDI------------- 80 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHH----HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCC-------------
T ss_pred HHHHHHhccCCCcccccchh----cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCC-------------
Confidence 34556667777666433322 5667777777777776654 245566777777777666532
Q ss_pred ecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-
Q 047451 463 VSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL- 541 (778)
Q Consensus 463 l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 541 (778)
+. +..+++|+.|+|++|.+.+ ++ .+..++ +|+.|+|++|.+.+. ..+..+++|+.|+|++|.+
T Consensus 81 ----------~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 81 ----------KP-LTNLKNLGWLFLDENKIKD-LS-SLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp ----------GG-GGGCTTCCEEECCSSCCCC-CT-TSTTCT-TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ----------hh-hccCCCCCEEECcCCCCCC-Ch-hhccCC-CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 22 6667777777777777763 33 455665 577777777777753 3467777777777777777
Q ss_pred ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCCh
Q 047451 542 VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPS 618 (778)
Q Consensus 542 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~ 618 (778)
....+..+++|+.|+|++|++.+..| +..+++|+.|+|++|+|+++. . +..+++|+.|+|++|++++ .|.
T Consensus 145 ~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~--l~~l~~L~~L~L~~N~l~~-~p~ 214 (605)
T 1m9s_A 145 DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--A--LAGLKNLDVLELFSQECLN-KPI 214 (605)
T ss_dssp CCGGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--G--GTTCTTCSEEECCSEEEEC-CCC
T ss_pred CchhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--H--HccCCCCCEEEccCCcCcC-Ccc
Confidence 33567777777888888877777655 777777888888888777652 2 2567778888888877763 443
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=2.7e-16 Score=178.13 Aligned_cols=174 Identities=24% Similarity=0.302 Sum_probs=113.2
Q ss_pred ccccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchh
Q 047451 80 SLFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLA 159 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~ 159 (778)
.+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +..+++|++|+|++|.|+.+ +
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l---------~ 103 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL---------S 103 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC---------T
T ss_pred chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC---------h
Confidence 45677778888888887753 33 47778888888888888775433 77788888888888865432 2
Q ss_pred HHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCC
Q 047451 160 NLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSP 239 (778)
Q Consensus 160 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 239 (778)
.+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++| .+.+..+ +..+++
T Consensus 104 -~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~ 176 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTK 176 (605)
T ss_dssp -TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTT
T ss_pred -hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC-cCCCchh-hccCCC
Confidence 456677777777777777653 3466777777777777777643 45666666666666666 4444333 555666
Q ss_pred CCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcc
Q 047451 240 LEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSN 277 (778)
Q Consensus 240 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~ 277 (778)
|+.|+|++|.+++. ..+..+++|+.|+|++ |.+.+
T Consensus 177 L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~-N~l~~ 211 (605)
T 1m9s_A 177 LQNLYLSKNHISDL--RALAGLKNLDVLELFS-QECLN 211 (605)
T ss_dssp CCEEECCSSCCCBC--GGGTTCTTCSEEECCS-EEEEC
T ss_pred CCEEECcCCCCCCC--hHHccCCCCCEEEccC-CcCcC
Confidence 66666666666543 2355556666666655 44443
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1e-16 Score=154.52 Aligned_cols=137 Identities=21% Similarity=0.290 Sum_probs=119.6
Q ss_pred cccccccccccccCChhhccccccccEEECCCCcccccCcc-cccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCC
Q 047451 483 YALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPE-TFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLG 558 (778)
Q Consensus 483 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls 558 (778)
+++++++|+++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|+|++|++ .|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888886 66765543 689999999999877664 488899999999999998 57889999999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 559 DNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 559 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
+|++++..+..|.++++|++|+|++|++++..+..+ ..+++|++|++++|+++|.++..++..|-
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~~~l 151 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFAEWL 151 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHHHHH
Confidence 999999999999999999999999999999988776 78999999999999999999988776653
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=4.8e-19 Score=199.48 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=76.6
Q ss_pred cccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccC
Q 047451 506 QLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKS 583 (778)
Q Consensus 506 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 583 (778)
.|+.|++++|.+++ +|. +..+++|+.|+|++|.+ +|..+..+++|+.|+|++|+++++ | .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCC
Confidence 36667777777765 344 66677777777777777 666777777777777777777663 4 567777777777777
Q ss_pred ccccccC-CCCccccccCcCcEEEcCCCcCCCCCCh--HHHhcccccccc
Q 047451 584 NNFHGVI-EEPNACFEFVKLRIIDLSHNRFAGNLPS--KHFECWNAMKDV 630 (778)
Q Consensus 584 N~l~~~~-~~~~~~~~l~~L~~L~ls~N~l~~~ip~--~~~~~~~~l~~l 630 (778)
|+|++.. |..+ ..+++|+.|++++|++++..|. ..+..+++|+.|
T Consensus 518 N~l~~~~~p~~l--~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 518 NRLQQSAAIQPL--VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SCCCSSSTTGGG--GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCCCcHHH--hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 7776664 4444 5677777777777777654432 223334555544
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=5.9e-18 Score=196.70 Aligned_cols=142 Identities=30% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhC
Q 047451 471 EIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLAN 548 (778)
Q Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~ 548 (778)
..+..+..++.|+.|+|++|.+. .+|..++.+. +|++|+|++|.|+ .+|..|..+++|+.|+|++|.| +|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD-FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCC-SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC-CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 34455556666666666666665 4555555555 4666666666666 4455555555555555555555 5555555
Q ss_pred CCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCcccccc-CcCcEEEcCCCcCCCCCCh
Q 047451 549 CVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEF-VKLRIIDLSHNRFAGNLPS 618 (778)
Q Consensus 549 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~ls~N~l~~~ip~ 618 (778)
+++|++|+|++|.|+. +|..|+.+++|++|+|++|++++.+|..+ ... ..+..+++++|.++|.+|.
T Consensus 292 l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~--~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKIL--TEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHH--HHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHH--hhcchhhhHHhhccCcccCcCcc
Confidence 5556666666665553 24445555556666666665555544333 111 1112345555555555553
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=3e-16 Score=152.14 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=115.4
Q ss_pred hcccceeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEE
Q 047451 455 SVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMI 534 (778)
Q Consensus 455 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 534 (778)
++.++++++++|.++ .+| .+..+++|++|++++|.+. .+..+..++ +|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCC-CCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 445556666666665 445 5788888999999988765 234667777 79999999999988778888889999999
Q ss_pred ECCCCcc---ChhhhhCCCCCCEEeCCCCc-CCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCC
Q 047451 535 DFSNNLL---VPKSLANCVKLKFLDLGDNQ-ITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHN 610 (778)
Q Consensus 535 ~L~~N~l---~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N 610 (778)
++++|++ .+..+..+++|++|++++|+ ++.. + .+..+++|++|++++|++++.. .+ ..+++|++|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l--~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GI--EDFPKLNQLYAFSQ 191 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TG--GGCSSCCEEEECBC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--Hh--ccCCCCCEEEeeCc
Confidence 9999988 47888899999999999998 6665 4 6888999999999999988753 33 67899999999999
Q ss_pred cCC
Q 047451 611 RFA 613 (778)
Q Consensus 611 ~l~ 613 (778)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 886
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=8.6e-18 Score=195.34 Aligned_cols=220 Identities=20% Similarity=0.173 Sum_probs=78.8
Q ss_pred cHHhHHHHHHHHhcCccCCCCCCCCCCCCCCCCCCCCCCCCCCCccCceeeCCCCCcEEEEEcCCCCCccccCCcccccc
Q 047451 4 HDHERSALLNFKESLVINRTASGYPSAYPKVASWKLDEKNSDCCLWDGVKCNEDTGHVVELDLASSCLYGSVNSTSSLFQ 83 (778)
Q Consensus 4 ~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~c~w~~v~c~~~~~~v~~L~Ls~~~l~~~~~~~~~l~~ 83 (778)
.+.++++|+++..+...... ..-..|... ....+.|.++.+.. ++++.|+|.++.+.....
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~------- 190 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKT--------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEANQ------- 190 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHT--------TC--------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccC--------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcchh-------
Confidence 34678999999988754322 134556543 44567898887764 679999998887754321
Q ss_pred CCCCCEEeCCCCCCCCC--------CCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccC
Q 047451 84 LVHLQRLSLFDNNFNFS--------EIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQK 155 (778)
Q Consensus 84 l~~L~~L~Ls~n~l~~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~ 155 (778)
..++.++|+.+.+... ..++.+..+++|++|+|++|.+. .+|..+..+++|++|+|++|
T Consensus 191 -~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N----------- 257 (727)
T 4b8c_D 191 -ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN----------- 257 (727)
T ss_dssp --------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-----------
T ss_pred -hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-----------
Confidence 2344455555543211 12334444555555555555544 34444444555555555555
Q ss_pred CchhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCC
Q 047451 156 PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQ 235 (778)
Q Consensus 156 ~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 235 (778)
.++ .+|..|.++++|++|+|++|.++ .+|..++.+++|++|+|++| .+......|.
T Consensus 258 ---------------------~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~ 313 (727)
T 4b8c_D 258 ---------------------SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEFG 313 (727)
T ss_dssp ---------------------CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS-CCCCCCSSTT
T ss_pred ---------------------cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC-CCCccChhhh
Confidence 444 34444555555555555555555 44555555555555555555 3332222444
Q ss_pred CCCCCCEEeccCCcCCccCcccccCCCC-CCeEeccCCCCCcccCC
Q 047451 236 KSSPLEDLRLSYTRFSGKIPSSLGNLTK-LEDLYLSGGNGFSNELP 280 (778)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~~n~l~~~~~ 280 (778)
.+++|+.|+|++|.+++.+|..+..+.. +..+++++ |.+++.+|
T Consensus 314 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~-N~l~~~~p 358 (727)
T 4b8c_D 314 NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD-NRPEIPLP 358 (727)
T ss_dssp SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH-CCCCCCCC
T ss_pred cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhcc-CcccCcCc
Confidence 5555555555555555555544433211 11244544 45554444
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.2e-16 Score=153.04 Aligned_cols=151 Identities=20% Similarity=0.217 Sum_probs=119.2
Q ss_pred CCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCcccccc
Q 047451 407 GTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALD 486 (778)
Q Consensus 407 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 486 (778)
.+++|+.|++++|.+..++ .+..+++|++|++++|.+. .+..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~l~~n~~~------------------------~~~~l~~l~~L~~L~ 94 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT---GIEYAHNIKDLTINNIHAT------------------------NYNPISGLSNLERLR 94 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT---TGGGCTTCSEEEEESCCCS------------------------CCGGGTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH---HHhcCCCCCEEEccCCCCC------------------------cchhhhcCCCCCEEE
Confidence 4566777777777666544 2444556666666665433 224678899999999
Q ss_pred cccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCc-c--ChhhhhCCCCCCEEeCCCCcCC
Q 047451 487 LSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNL-L--VPKSLANCVKLKFLDLGDNQIT 563 (778)
Q Consensus 487 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l--~~~~l~~l~~L~~L~Ls~N~l~ 563 (778)
+++|++++..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|+ + +| .+..+++|++|++++|+++
T Consensus 95 l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 95 IMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECTTCBGGGSCCCTTCT-TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred eECCccCcccChhhcCCC-CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 999999977788888888 79999999999998888889999999999999998 6 55 7899999999999999999
Q ss_pred CCCcccccCCCCCCEEEccCccccc
Q 047451 564 DFFPSWLGTLPELEVLILKSNNFHG 588 (778)
Q Consensus 564 ~~~~~~~~~l~~L~~L~Ls~N~l~~ 588 (778)
+.. .+..+++|+.|++++|+|.+
T Consensus 173 ~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 173 DYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCT--TGGGCSSCCEEEECBC----
T ss_pred ChH--HhccCCCCCEEEeeCcccCC
Confidence 864 78899999999999999864
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=9.2e-17 Score=163.16 Aligned_cols=172 Identities=22% Similarity=0.280 Sum_probs=113.1
Q ss_pred CCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccceeEecCCccccCCchhhhcCCccccccc
Q 047451 408 TNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDL 487 (778)
Q Consensus 408 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 487 (778)
+..+..++++++.++++. .+..+++|+.|++++|.++ .++ .+..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~-----------------------~l~-~l~~l~~L~~L~L 70 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQ-----------------------SLA-GMQFFTNLKELHL 70 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCC-----------------------CCT-TGGGCTTCCEEEC
T ss_pred HHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCcc-----------------------cch-HHhhCCCCCEEEC
Confidence 344556666666665554 2334456666666666555 233 4666777777777
Q ss_pred ccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-ChhhhhCCCCCCEEeCCCCcCCCCC
Q 047451 488 SYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-VPKSLANCVKLKFLDLGDNQITDFF 566 (778)
Q Consensus 488 s~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~l~~l~~L~~L~Ls~N~l~~~~ 566 (778)
++|++++..+ +..++ +|++|++++|++++..+ +.. ++|++|++++|++ ....+..+++|++|++++|++++.
T Consensus 71 ~~N~i~~~~~--l~~l~-~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 71 SHNQISDLSP--LKDLT-KLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp CSSCCCCCGG--GTTCS-SCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCChh--hccCC-CCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC-
Confidence 7777774333 66666 67777777777775422 222 7777777777777 333577788888888888888775
Q ss_pred cccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 567 PSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 567 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
..+..+++|+.|++++|++++. ..+ ..+++|+.|++++|++++ .|..
T Consensus 144 -~~l~~l~~L~~L~L~~N~i~~~--~~l--~~l~~L~~L~l~~N~~~~-~~~~ 190 (263)
T 1xeu_A 144 -VMLGFLSKLEVLDLHGNEITNT--GGL--TRLKKVNWIDLTGQKCVN-EPVK 190 (263)
T ss_dssp -GGGGGCTTCCEEECTTSCCCBC--TTS--TTCCCCCEEEEEEEEEEC-CCEE
T ss_pred -hHHccCCCCCEEECCCCcCcch--HHh--ccCCCCCEEeCCCCcccC-Cccc
Confidence 2577778888888888888766 233 567788888888888774 3543
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=150.04 Aligned_cols=137 Identities=24% Similarity=0.331 Sum_probs=117.4
Q ss_pred cccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCC
Q 047451 483 YALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGD 559 (778)
Q Consensus 483 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~ 559 (778)
+++++++|.++ .+|..+. .+|++|++++|.++ .+|..|.++++|++|+|++|++ .+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46788888887 5665543 36889999999988 5567888899999999999988 456789999999999999
Q ss_pred CcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhcccc
Q 047451 560 NQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNA 626 (778)
Q Consensus 560 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~ 626 (778)
|+++++.+..|.++++|++|+|++|+|+++.+..+ ..+++|+.|++++|++.|.++..||..|..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 99999999999999999999999999998766655 789999999999999999999888887753
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3.8e-16 Score=158.59 Aligned_cols=169 Identities=21% Similarity=0.253 Sum_probs=140.7
Q ss_pred ccccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCcCcCCCCchhhcccce
Q 047451 381 NQDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNKLQGPLPIPISVLTSS 460 (778)
Q Consensus 381 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~l~~ 460 (778)
.+.++..+++++|.++ .++ .+. .+++|+.|++++|.+..++ .+..+++|+.|++++|++++
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~--~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~------------ 77 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQK--ELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISD------------ 77 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHH--HHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCC------------
T ss_pred HHHHHHHHHhcCCCcc-ccc-chh--hcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCC------------
Confidence 4567888899999987 444 233 7899999999999998875 35667888888888888763
Q ss_pred eEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCc
Q 047451 461 YLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNL 540 (778)
Q Consensus 461 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 540 (778)
++. +..+++|++|++++|++++ +|.... . +|++|++++|++++. ..+..+++|+.|++++|+
T Consensus 78 -----------~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~--~-~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 78 -----------LSP-LKDLTKLEELSVNRNRLKN-LNGIPS--A-CLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNK 139 (263)
T ss_dssp -----------CGG-GTTCSSCCEEECCSSCCSC-CTTCCC--S-SCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSC
T ss_pred -----------Chh-hccCCCCCEEECCCCccCC-cCcccc--C-cccEEEccCCccCCC--hhhcCcccccEEECCCCc
Confidence 333 7889999999999999985 443322 4 799999999999975 468999999999999999
Q ss_pred c--ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 541 L--VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 541 l--~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
+ ++ .+..+++|++|++++|++++. ..+..+++|+.|++++|++.+.
T Consensus 140 i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 140 LKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9 54 789999999999999999987 6789999999999999999865
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=3e-17 Score=184.83 Aligned_cols=193 Identities=18% Similarity=0.106 Sum_probs=118.7
Q ss_pred CCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCCCc-------------CcCCCCchh--hcccceeE-ecCCcccc
Q 047451 407 GTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRFNK-------------LQGPLPIPI--SVLTSSYL-VSNNQLTG 470 (778)
Q Consensus 407 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~~~~~~--~~~l~~L~-l~~n~l~~ 470 (778)
..+.|+.|++++|.+..++.. +..+++|+.|++++|. ..+..|..+ ..+|+.|+ ++.|.+..
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~--i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSE--LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cCccceeccCChhhHHhhHHH--HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 567777888888887766543 3445677777776654 233333322 44455555 34333221
Q ss_pred CCch------hhhc--CCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-
Q 047451 471 EIPP------SICS--LNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL- 541 (778)
Q Consensus 471 ~~~~------~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l- 541 (778)
++. .+.. ...|+.|++++|++++ +|. +..++ +|+.|+|++|.++ .+|..|..+++|+.|+|++|++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLL-LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGT-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccc-cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 000 0111 1246677777777774 554 66666 5777777777777 5566777777777777777777
Q ss_pred -ChhhhhCCCCCCEEeCCCCcCCCCC-cccccCCCCCCEEEccCccccccCCCCcc-ccccCcCcEEEc
Q 047451 542 -VPKSLANCVKLKFLDLGDNQITDFF-PSWLGTLPELEVLILKSNNFHGVIEEPNA-CFEFVKLRIIDL 607 (778)
Q Consensus 542 -~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~l~~L~~L~l 607 (778)
+| .+..+++|++|+|++|++++.. |..+..+++|+.|+|++|++++.++.... ...+++|+.||+
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 55 6777777777777777777765 67777777777777777777766543321 233667777654
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=4.1e-15 Score=141.39 Aligned_cols=137 Identities=22% Similarity=0.292 Sum_probs=114.2
Q ss_pred ccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--C-hhhhhCCCCCCEEeCC
Q 047451 482 LYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--V-PKSLANCVKLKFLDLG 558 (778)
Q Consensus 482 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~-~~~l~~l~~L~~L~Ls 558 (778)
.+.+++++|+++ .+|..+. . +|++|++++|++++..+..|..+++|++|++++|++ + +..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--S-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--C-CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467778888877 4554443 2 799999999999887777888899999999999998 3 4557899999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCC-hHHHhcc
Q 047451 559 DNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP-SKHFECW 624 (778)
Q Consensus 559 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip-~~~~~~~ 624 (778)
+|++++..+..|..+++|++|++++|+++++.+..+ ..+++|++|++++|+++|.+| ..++..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~~l~~l~~~ 149 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCccHHHHHHH
Confidence 999999988889999999999999999998766554 678999999999999999888 3445544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.9e-15 Score=142.32 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=95.4
Q ss_pred Cccccccccccccc-ccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEE
Q 047451 480 NGLYALDLSYNNLS-GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFL 555 (778)
Q Consensus 480 ~~L~~L~Ls~N~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L 555 (778)
++|++|++++|+++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|++ .|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 56777777777776 56666666666 677777777777755 5677777777777777777 55666668888888
Q ss_pred eCCCCcCCCCCc-ccccCCCCCCEEEccCccccccCCCC-ccccccCcCcEEEcCCCcCCCCCCh
Q 047451 556 DLGDNQITDFFP-SWLGTLPELEVLILKSNNFHGVIEEP-NACFEFVKLRIIDLSHNRFAGNLPS 618 (778)
Q Consensus 556 ~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~l~~L~~L~ls~N~l~~~ip~ 618 (778)
++++|++++..+ ..+..+++|+.|++++|++++..+.. ..+..+++|++|++++|.+. ++|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 888888877532 67777888888888888887654300 12366788888888888876 5553
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.2e-15 Score=141.90 Aligned_cols=130 Identities=24% Similarity=0.229 Sum_probs=101.2
Q ss_pred cceeEecCCccc-cCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEEC
Q 047451 458 TSSYLVSNNQLT-GEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDF 536 (778)
Q Consensus 458 l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 536 (778)
+++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..++ +|++|++++|.+++.+|..+..+++|++|++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 344444444444 45666677788888888888888754 5666776 6888888888888777777777888888888
Q ss_pred CCCcc--Ch--hhhhCCCCCCEEeCCCCcCCCCCc---ccccCCCCCCEEEccCccccccC
Q 047451 537 SNNLL--VP--KSLANCVKLKFLDLGDNQITDFFP---SWLGTLPELEVLILKSNNFHGVI 590 (778)
Q Consensus 537 ~~N~l--~~--~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~ 590 (778)
++|.+ ++ ..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+....
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 88888 44 678889999999999999988766 57889999999999999887553
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=9.5e-15 Score=140.70 Aligned_cols=135 Identities=27% Similarity=0.297 Sum_probs=93.8
Q ss_pred cccccccccccccccCCh-hhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEe
Q 047451 481 GLYALDLSYNNLSGMLPA-CLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLD 556 (778)
Q Consensus 481 ~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~ 556 (778)
++++|++++|++++..+. .+..++ +|++|+|++|.+++..|..|.++++|++|+|++|++ .+..|.++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 677777777777654443 355666 677777777777777777777777788888888777 455577888888888
Q ss_pred CCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChH
Q 047451 557 LGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSK 619 (778)
Q Consensus 557 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~ 619 (778)
|++|++++..|..|..+++|++|++++|++++..+... -...++...+..+...|..|..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~---~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW---FAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH---HHHHHHHHCCSGGGCBBCSSTT
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH---HHHHHHHcCCCCCCCCCCCChH
Confidence 88888888888888888888899999888876533211 0111333344555566666643
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=5.7e-15 Score=136.01 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=79.4
Q ss_pred Cccccccccccccc-ccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEE
Q 047451 480 NGLYALDLSYNNLS-GMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFL 555 (778)
Q Consensus 480 ~~L~~L~Ls~N~l~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L 555 (778)
++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|.+ .|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 45555555555 566666666666654 5566666666666666666 45555667777777
Q ss_pred eCCCCcCCCC-CcccccCCCCCCEEEccCccccccCCCC-ccccccCcCcEEEcCC
Q 047451 556 DLGDNQITDF-FPSWLGTLPELEVLILKSNNFHGVIEEP-NACFEFVKLRIIDLSH 609 (778)
Q Consensus 556 ~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~l~~L~~L~ls~ 609 (778)
++++|++++. .+..+..+++|++|++++|++++..+.. ..+..+++|+.||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777664 2356777777777777777777654300 1225677777777653
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.8e-14 Score=132.69 Aligned_cols=129 Identities=26% Similarity=0.300 Sum_probs=85.0
Q ss_pred CCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhh
Q 047451 84 LVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAE 163 (778)
Q Consensus 84 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~ 163 (778)
.++|++|++++|.+....+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.|+. .+|..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG--------GLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS--------CTHHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc--------hHHHHhh
Confidence 356677777777665223566666777777777777777644 556667777777777775532 2556666
Q ss_pred cCCCCCEEEccCccCCCC-cchhhcCCCCCCEEEcccCcCCCCCC---hhhcCCCCCCEEecc
Q 047451 164 NLTNLKALDLINVHISST-VPHTLANLSSLHFLSLSGCRLQGEFP---QEIFQLPNLQFLGVM 222 (778)
Q Consensus 164 ~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~l~~l~~L~~L~L~ 222 (778)
.+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 677777777777777653 33667777777777777777775444 356777777777765
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=136.63 Aligned_cols=124 Identities=24% Similarity=0.338 Sum_probs=97.3
Q ss_pred eeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCC
Q 047451 460 SYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNN 539 (778)
Q Consensus 460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 539 (778)
.+++++|.++ .+|..+ .++|++|++++|+++ .+|..+..+. +|++|++++|.|++..+..|.++++|++|+|++|
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~-~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYK-HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhccc-CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3444444444 344433 246788888888887 6677777777 6888888888888877778888888888888888
Q ss_pred cc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccc
Q 047451 540 LL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHG 588 (778)
Q Consensus 540 ~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 588 (778)
++ .+..|.++++|++|+|++|+++.+.+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88 45678889999999999999998888889999999999999999864
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=2.6e-14 Score=150.58 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCCCCcccccccccCCCCCcchhhhcC-CCCCcEEecCCCCCCc-CCCCCCCcccceeeccccCCCCCC-chhcc-----
Q 047451 310 LTQLDSLTISDSNFSGPMSSSLSWLTN-LNQLTSLNFPNCNLNE-PLLVPNTQKFEIIGLRSCNLSEFP-SFLHN----- 381 (778)
Q Consensus 310 l~~L~~L~L~~n~l~~~~~~~~~~l~~-l~~L~~L~l~~n~l~~-~~~~~~~~~L~~L~L~~n~l~~lp-~~l~~----- 381 (778)
+++++.|.++++ +. ...+..+.. +++|+.|++++|++.. .......+.+..+.+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~-i~---~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LN---AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-EC---HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-cc---HHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccc
Confidence 345566666543 11 112224444 7889999999998772 111222333444444444 333 34556
Q ss_pred ---cccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCCccccccCCCCCCCCCCCCEEEcCC
Q 047451 382 ---QDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYNLLMHFEHNLPVLPWNNLGALDLRF 443 (778)
Q Consensus 382 ---l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 443 (778)
+++|+++++.+ .++ .++...+ .++++|+.+++++|.+..+... .|..+.++..+....
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF-~~~~~L~~l~l~~n~i~~i~~~-aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAF-KGCDNLKICQIRKKTAPNLLPE-ALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTT-TTCTTCCEEEBCCSSCCEECTT-SSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-ccc-chhHHHh-hcCcccceEEcCCCCccccchh-hhcCCCceEEecCcc
Confidence 78888888887 665 4444332 2778888888888877766654 455555555555444
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=1.7e-13 Score=130.16 Aligned_cols=127 Identities=23% Similarity=0.301 Sum_probs=94.6
Q ss_pred eeEecCCccccCCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCC
Q 047451 460 SYLVSNNQLTGEIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNN 539 (778)
Q Consensus 460 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 539 (778)
.+++++++++ .+|..+ .++|++|++++|++++..+..+..++ +|++|++++|.+++..+..|..+++|++|++++|
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3444444444 333322 25678888888888755555566666 6888888888888777777788888888888888
Q ss_pred cc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccC
Q 047451 540 LL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVI 590 (778)
Q Consensus 540 ~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 590 (778)
++ .+..+..+++|++|++++|+++++.+..|..+++|++|++++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 88 3445778899999999999999887777888999999999999987653
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=4.7e-14 Score=148.55 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=49.6
Q ss_pred CCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCC-eecccccccCCchhhhccCCCCCCc
Q 047451 237 SSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLK-TLEISSFNFSGTLQASLGNLTQLDS 315 (778)
Q Consensus 237 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (778)
+++|+.+++++|+++...+..|..+++|+++++.+ + +....+..|.++++|+ .+++.+ .++.+.+.+|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 44555555555555544444455555555555543 2 4444444455555555 555544 444344445555555555
Q ss_pred ccccccccCCCCCcchhhhcCCCCCcEE
Q 047451 316 LTISDSNFSGPMSSSLSWLTNLNQLTSL 343 (778)
Q Consensus 316 L~L~~n~l~~~~~~~~~~l~~l~~L~~L 343 (778)
++++.|.++.+.+. .|.++++|+.+
T Consensus 302 l~l~~n~i~~I~~~---aF~~~~~L~~l 326 (329)
T 3sb4_A 302 VLATGDKITTLGDE---LFGNGVPSKLI 326 (329)
T ss_dssp EEECSSCCCEECTT---TTCTTCCCCEE
T ss_pred EEeCCCccCccchh---hhcCCcchhhh
Confidence 55555554444443 34444444444
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=1.4e-12 Score=140.87 Aligned_cols=151 Identities=8% Similarity=-0.009 Sum_probs=74.4
Q ss_pred HhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCC
Q 047451 161 LAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPL 240 (778)
Q Consensus 161 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 240 (778)
+|.++.+|+.+.+.. .++.....+|.++++|+.+++..+ ++..-..+|..+++|+.+.+..+ .......+|.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 566677777777753 355555666777777777777544 33334445666666666555443 222223344444332
Q ss_pred CEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccccccCCchhhhccCCCCCCccccc
Q 047451 241 EDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDSLTIS 319 (778)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (778)
+...... .......+|..+++|+.+.+.. .+.......|..+++|+.+.+..+ +......+|.++..|+.+.+.
T Consensus 143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 143 EITIPEG--VTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccCcc--ccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 2222211 1112234455556666665542 233333344555555555555443 222333444444555444443
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=2.5e-13 Score=127.75 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=87.0
Q ss_pred ccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccC
Q 047451 507 LWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKS 583 (778)
Q Consensus 507 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 583 (778)
.+.+++++|.++. +|..+ .++|++|+|++|++ .|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4556666666664 33333 25666666666666 356677888999999999999998888899999999999999
Q ss_pred ccccccCCCCccccccCcCcEEEcCCCcCCCCCC-hHHHhcc
Q 047451 584 NNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP-SKHFECW 624 (778)
Q Consensus 584 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip-~~~~~~~ 624 (778)
|+|+++.+..+ ..+++|++|++++|+++|.++ ..++..|
T Consensus 88 N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~~l~~l~~~ 127 (170)
T 3g39_A 88 NQLKSIPRGAF--DNLKSLTHIWLLNNPWDCACSDILYLSRW 127 (170)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCBCTTBGGGHHHHHH
T ss_pred CccCEeCHHHh--cCCCCCCEEEeCCCCCCCCchhHHHHHHH
Confidence 99998876655 789999999999999999886 4555554
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.44 E-value=2.9e-12 Score=137.78 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=75.4
Q ss_pred cccccccccccccccCChhhccccccccEEECCCCccc-----ccCcccccCCCCccEEECCCCcc---ChhhhhCCCCC
Q 047451 481 GLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFH-----GFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKL 552 (778)
Q Consensus 481 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L 552 (778)
+|+.+.+ .+.++.....+|..+. +|+.+++.+|.+. .+.+.+|.++++|+.+++.++ + -..+|.++++|
T Consensus 249 ~L~~i~l-p~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKL-PNGVTNIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEE-ETTCCEECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSC
T ss_pred CccEEEe-CCCccEEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCc
Confidence 4444444 2233323333444444 4555555554443 345566777777777777743 4 45667777777
Q ss_pred CEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccC-cCcEEEcCCCcC
Q 047451 553 KFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFV-KLRIIDLSHNRF 612 (778)
Q Consensus 553 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~-~L~~L~ls~N~l 612 (778)
+.+++..| ++.+...+|.++ +|+.+++++|.+..+.+..+ .+++ .++.|.+..+.+
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F--~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW--YGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC--CCSCTTCCEEEECGGGH
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc--cCCCCCccEEEeCHHHH
Confidence 77777544 666667777777 78888888887766655544 4553 667777766554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.3e-13 Score=130.68 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=100.1
Q ss_pred hhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--Ch-hhhhCCCC
Q 047451 475 SICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VP-KSLANCVK 551 (778)
Q Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~-~~l~~l~~ 551 (778)
.+.++.+|++|++++|+++ .++. +....++|++|++++|.+++. ..|..+++|++|++++|.+ +| ..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3556778888899988888 4454 444443689999999988876 5788888888888888888 44 44578888
Q ss_pred CCEEeCCCCcCCCCCc-ccccCCCCCCEEEccCccccccCCC-CccccccCcCcEEEcCCCcCC
Q 047451 552 LKFLDLGDNQITDFFP-SWLGTLPELEVLILKSNNFHGVIEE-PNACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 552 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~l~~L~~L~ls~N~l~ 613 (778)
|++|++++|+++...+ ..+..+++|+.|++++|+++..... ...+..+++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888866432 3678888888888888888754221 001367888888888888765
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.9e-15 Score=145.24 Aligned_cols=135 Identities=23% Similarity=0.276 Sum_probs=82.1
Q ss_pred chhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc-ChhhhhCCCC
Q 047451 473 PPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL-VPKSLANCVK 551 (778)
Q Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~l~~l~~ 551 (778)
|..+..+++|++|++++|++++ +| .+..++ +|++|++++|.++ .+|..+..+++|++|++++|++ ....+..+++
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~ 116 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVN 116 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHH
T ss_pred hHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCC
Confidence 3366667777777777777764 45 555555 5777777777766 3455555556666677766666 2225666666
Q ss_pred CCEEeCCCCcCCCCCc-ccccCCCCCCEEEccCccccccCCCC--------ccccccCcCcEEEcCCCcCC
Q 047451 552 LKFLDLGDNQITDFFP-SWLGTLPELEVLILKSNNFHGVIEEP--------NACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 552 L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~~~l~~L~~L~ls~N~l~ 613 (778)
|++|++++|++++..+ ..+..+++|++|++++|++.+.+|.. ..+..+++|+.|| +|+++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777665432 35666667777777777666554331 0124566666665 55554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=1.3e-13 Score=130.70 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=85.7
Q ss_pred CcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--Chh--hhhCCCCCCEE
Q 047451 480 NGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPK--SLANCVKLKFL 555 (778)
Q Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~--~l~~l~~L~~L 555 (778)
++|++|++++|.+++. ..+..++ +|++|++++|.+++..+..|..+++|++|++++|++ +|. .+..+++|+.|
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLR-RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCS-SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCCEEECCCCCCCcc--cccccCC-CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 3788888888888754 4666776 688899998888877666668888899999999988 555 78889999999
Q ss_pred eCCCCcCCCCCcc---cccCCCCCCEEEccCccccc
Q 047451 556 DLGDNQITDFFPS---WLGTLPELEVLILKSNNFHG 588 (778)
Q Consensus 556 ~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~ 588 (778)
++++|+++...+. .+..+++|+.|++++|.+..
T Consensus 119 ~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 119 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999875433 48889999999999998764
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=9e-13 Score=124.34 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=80.7
Q ss_pred cEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCc
Q 047451 508 WVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSN 584 (778)
Q Consensus 508 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 584 (778)
+.+++++|.++. +|..+. ++|++|+|++|++ .|..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 445555555542 333332 4555566666655 3556777888888888888888887777888999999999999
Q ss_pred cccccCCCCccccccCcCcEEEcCCCcCCCCCC-hHHHhccc
Q 047451 585 NFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLP-SKHFECWN 625 (778)
Q Consensus 585 ~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip-~~~~~~~~ 625 (778)
+|+++.+..+ ..+++|++|++++|++.+.++ ..++..|.
T Consensus 92 ~l~~l~~~~~--~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~ 131 (174)
T 2r9u_A 92 HLKSIPRGAF--DNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131 (174)
T ss_dssp CCCCCCTTTT--TTCTTCSEEECCSSCBCTTBGGGHHHHHHH
T ss_pred ccceeCHHHh--ccccCCCEEEeCCCCcccccccHHHHHHHH
Confidence 9987766545 778999999999999997765 34455443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=7.1e-12 Score=134.73 Aligned_cols=267 Identities=14% Similarity=0.125 Sum_probs=184.1
Q ss_pred cccCCCCCEEeCCCCCCCCCCCchhhcCCCCCCEEECCCCCCCccCchhhhCCCCCCEEECcCCCCCcccccccCCchhH
Q 047451 81 LFQLVHLQRLSLFDNNFNFSEIPSEILNFSRLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLAN 160 (778)
Q Consensus 81 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~ 160 (778)
+..+..++.+.+..+ +... -..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .++.+ -..
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I--------~~~ 174 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL--------KED 174 (401)
T ss_dssp EEECSSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE--------CSS
T ss_pred EEecCCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe--------hHH
Confidence 344567777777654 2111 13455554 6888888766 665666677774 688888875 34332 224
Q ss_pred HhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhcCCCCCCEEecccCCCCcccCCCCCCCCCC
Q 047451 161 LAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIFQLPNLQFLGVMKNPNLTGYLPQFQKSSPL 240 (778)
Q Consensus 161 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 240 (778)
.|.++++|+.+++..|+++.....+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ .......+|.+ .+|
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 677888888888888888877777777 588888888754 65566677888888888888876 44444446766 678
Q ss_pred CEEeccCCcCCccCcccccCCCCCCeEeccCCCCCc-----ccCCccccCCCCCCeecccccccCCchhhhccCCCCCCc
Q 047451 241 EDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFS-----NELPPSIGNLASLKTLEISSFNFSGTLQASLGNLTQLDS 315 (778)
Q Consensus 241 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (778)
+.+.+. +.++.....+|..|++|+.+.+.+ +... ......|.++++|+.+++.+ .+......+|.++++|+.
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 888884 456666677888888888888876 4443 34566788888899888884 466666778888888998
Q ss_pred ccccccccCCCCCcchhhhcCCCCCcEEecCCCCCCcC--CCCCCC-cccceeeccccCCC
Q 047451 316 LTISDSNFSGPMSSSLSWLTNLNQLTSLNFPNCNLNEP--LLVPNT-QKFEIIGLRSCNLS 373 (778)
Q Consensus 316 L~L~~n~l~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~-~~L~~L~L~~n~l~ 373 (778)
+.+..+ ++.+... .|.++ +|+.+++.+|..... ..+..+ ..++.+.+..+.+.
T Consensus 328 l~lp~~-l~~I~~~---aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 328 LTIPAN-VTQINFS---AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EEECTT-CCEECTT---SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEECcc-ccEEcHH---hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 888654 5544444 66777 889999888865542 222233 46677777766544
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=2e-15 Score=146.44 Aligned_cols=151 Identities=21% Similarity=0.240 Sum_probs=127.0
Q ss_pred hhhcCCcccccccccccccccCCh------hhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--Chhhh
Q 047451 475 SICSLNGLYALDLSYNNLSGMLPA------CLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSL 546 (778)
Q Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l 546 (778)
.+.....++.++++.+.+.+..|. .+..++ +|++|++++|.+++ +| .+..+++|++|++++|.+ +|..+
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~ 89 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLD 89 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchh
Confidence 356678899999999999988876 888888 79999999999997 55 899999999999999999 78888
Q ss_pred hCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCCh--------
Q 047451 547 ANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPS-------- 618 (778)
Q Consensus 547 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~-------- 618 (778)
..+++|++|++++|+++++ | .+..+++|++|++++|++++..+. ..+..+++|++|++++|++++.+|.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 8889999999999999985 4 688999999999999999865321 1236799999999999999876653
Q ss_pred -HHHhccccccccc
Q 047451 619 -KHFECWNAMKDVN 631 (778)
Q Consensus 619 -~~~~~~~~l~~l~ 631 (778)
.++..++.|+.++
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 3466677777665
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.39 E-value=8.9e-12 Score=134.58 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=39.3
Q ss_pred CCCCCCCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeecccc
Q 047451 233 QFQKSSPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEISS 296 (778)
Q Consensus 233 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~~ 296 (778)
+|.++.+|+++.+.. .++.....+|.+|++|+.+++.. .++......|..+++|+.+.+..
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC
Confidence 677777777777764 35555566677777777777753 34444455666666666665543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=3.5e-12 Score=119.88 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=90.2
Q ss_pred ccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCC
Q 047451 482 LYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLG 558 (778)
Q Consensus 482 L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls 558 (778)
.+.+++++|.++ .+|..+. .+|++|+|++|.|++..|..|.++++|++|+|++|++ .+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 567888888888 5676553 3799999999999988888999999999999999999 44557899999999999
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 559 DNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 559 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
+|+++++.+..|..+++|++|+|++|+++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999998888899999999999999998754
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=7.8e-12 Score=117.89 Aligned_cols=103 Identities=23% Similarity=0.325 Sum_probs=88.2
Q ss_pred cccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--Chh-hhhCCCCCCEEeCCC
Q 047451 483 YALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPK-SLANCVKLKFLDLGD 559 (778)
Q Consensus 483 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~-~l~~l~~L~~L~Ls~ 559 (778)
+.+++++|+++ .+|..+. . +|++|+|++|.+++..|..|.++++|++|+|++|++ +|. .|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 67888888886 6676554 3 799999999999988888899999999999999998 544 468899999999999
Q ss_pred CcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 560 NQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 560 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
|+|+++.+..|..+++|++|+|++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999998887899999999999999998754
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=3.9e-13 Score=143.17 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=75.2
Q ss_pred CcccccccccccccccCChhhccccccccEEECCCCcccccCcccc-----cCCCCccEEECCCCcc-------Chhhhh
Q 047451 480 NGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETF-----NKGTNLRMIDFSNNLL-------VPKSLA 547 (778)
Q Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l-------~~~~l~ 547 (778)
++|++|+|++|.+++.....+.....+|++|+|++|.++......+ ...++|++|+|++|.+ ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4666666666666533222332221256666666666654333322 2345677777777766 334456
Q ss_pred CCCCCCEEeCCCCcCCCCC----cccccCCCCCCEEEccCccccccCCCCc--cccccCcCcEEEcCCCcCC
Q 047451 548 NCVKLKFLDLGDNQITDFF----PSWLGTLPELEVLILKSNNFHGVIEEPN--ACFEFVKLRIIDLSHNRFA 613 (778)
Q Consensus 548 ~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~l~~L~~L~ls~N~l~ 613 (778)
.+++|++|+|++|+|++.. +..+...++|++|+|++|.|+......+ .....++|++|||++|+|+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 6677777777777766532 3445556677777777777654321111 1123466777777777765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.8e-11 Score=129.81 Aligned_cols=117 Identities=16% Similarity=0.151 Sum_probs=90.9
Q ss_pred EEECCCC-cccccCcccccCCCCccEEECCC-Ccc---ChhhhhCCCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccC
Q 047451 509 VLKLQGN-KFHGFIPETFNKGTNLRMIDFSN-NLL---VPKSLANCVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKS 583 (778)
Q Consensus 509 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l---~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 583 (778)
.++++++ .+++ +|. +..+++|++|+|++ |.+ .+..|.++++|+.|+|++|+|+++.|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6664 455 77777777777775 777 446788888999999999999998888899999999999999
Q ss_pred ccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhcccccccc
Q 047451 584 NNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWNAMKDV 630 (778)
Q Consensus 584 N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~~l~~l 630 (778)
|+|+++++..+ ..++ |+.|++++|+|.|.++..+|..|......
T Consensus 90 N~l~~~~~~~~--~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~ 133 (347)
T 2ifg_A 90 NALESLSWKTV--QGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLG 133 (347)
T ss_dssp SCCSCCCSTTT--CSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCS
T ss_pred CccceeCHHHc--ccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcc
Confidence 99988766554 3444 99999999999998888888887654433
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=8.5e-13 Score=140.51 Aligned_cols=135 Identities=18% Similarity=0.109 Sum_probs=88.8
Q ss_pred cCCcccccccccccccccCChhhc-----cccccccEEECCCCccccc----CcccccCCCCccEEECCCCcc-------
Q 047451 478 SLNGLYALDLSYNNLSGMLPACLG-----NFSVQLWVLKLQGNKFHGF----IPETFNKGTNLRMIDFSNNLL------- 541 (778)
Q Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l------- 541 (778)
.+++|++|+|++|.+++.....+. ..+ +|++|+|++|.++.. ++..+...++|++|+|++|.+
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~ 202 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL 202 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence 355788888888888754333332 223 689999999988653 344557788899999999988
Q ss_pred ChhhhhCCCCCCEEeCCCCcCCCCC----cccccCCCCCCEEEccCccccccCCCCccc-cccC--cCcEEE--cCCCcC
Q 047451 542 VPKSLANCVKLKFLDLGDNQITDFF----PSWLGTLPELEVLILKSNNFHGVIEEPNAC-FEFV--KLRIID--LSHNRF 612 (778)
Q Consensus 542 ~~~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~l~--~L~~L~--ls~N~l 612 (778)
++..+...++|++|+|++|.|++.. +..+...++|++|+|++|.|+......+.. .... .|+.+. +..|.+
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 3566778889999999999998643 334556788999999999987543222210 1111 166666 666665
Q ss_pred C
Q 047451 613 A 613 (778)
Q Consensus 613 ~ 613 (778)
+
T Consensus 283 ~ 283 (372)
T 3un9_A 283 S 283 (372)
T ss_dssp H
T ss_pred C
Confidence 4
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=9.5e-10 Score=118.61 Aligned_cols=133 Identities=12% Similarity=0.134 Sum_probs=88.3
Q ss_pred CCchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCc--cChhhhhC
Q 047451 471 EIPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNL--LVPKSLAN 548 (778)
Q Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~l~~ 548 (778)
....+|.++..|+.+.+..+... ....+|..+. +|+.+.+. +.++.+...+|.++.+|+.+++..+- |-..+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhC
Confidence 34457788888888888765443 4445666666 68888886 45666667788888888888887652 25677888
Q ss_pred CCCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcC
Q 047451 549 CVKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRF 612 (778)
Q Consensus 549 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l 612 (778)
+.+|+.+.+..+ ++.+...+|.++++|+.+++.++..... .+ ....+|+.+++..|.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~---~~--~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN---AI--STDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH---TC--BCCCCC----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh---hh--hccCCCCEEEeCCCCE
Confidence 888888888654 7777778888888888888888765421 22 4567788887776654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.13 E-value=3.6e-09 Score=114.09 Aligned_cols=109 Identities=11% Similarity=0.214 Sum_probs=68.7
Q ss_pred CchhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCc--cChhhhhCC
Q 047451 472 IPPSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNL--LVPKSLANC 549 (778)
Q Consensus 472 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~l~~l 549 (778)
...+|.++++|+.+.+. +.+......+|.++. +|+.+++..+ ++.+...+|.++.+|+.+.+..+- |-..+|.++
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C 356 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNC 356 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTC
T ss_pred cCcccccccccccccCC-CcccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCC
Confidence 34567777778777775 344433445566666 6888888754 665667788888888888886652 256778888
Q ss_pred CCCCEEeCCCCcCCCCCcccccCCCCCCEEEccCccc
Q 047451 550 VKLKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNF 586 (778)
Q Consensus 550 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 586 (778)
++|+.+++.++.... ..+....+|+.+.+..|.+
T Consensus 357 ~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 357 TALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 888888888876532 4567777888888877654
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=6.3e-10 Score=117.87 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=67.7
Q ss_pred ccccccc-cccccCChhhccccccccEEECCC-CcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCCCCEEeCC
Q 047451 484 ALDLSYN-NLSGMLPACLGNFSVQLWVLKLQG-NKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVKLKFLDLG 558 (778)
Q Consensus 484 ~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~L~~L~Ls 558 (778)
.++.+++ +++ .+|. +..+. +|++|+|++ |.+++..+..|.++++|+.|+|++|+| .|..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 565 4555 55555 577777764 777666666677777777777777776 45566777777777777
Q ss_pred CCcCCCCCcccccCCCCCCEEEccCccccc
Q 047451 559 DNQITDFFPSWLGTLPELEVLILKSNNFHG 588 (778)
Q Consensus 559 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 588 (778)
+|+|+++++..|..++ |+.|+|++|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777776666666655 7777777777653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=5.8e-08 Score=103.98 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=88.6
Q ss_pred hhhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc--ChhhhhCCCC
Q 047451 474 PSICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL--VPKSLANCVK 551 (778)
Q Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~l~~l~~ 551 (778)
.++..+.+|+.+.+..+ +......++.... .|+.+.+..+ ++.+....|.++.+|+.+.+..+-- -...|.++++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccc
Confidence 34555566666666443 2223334455555 5777777654 5555566777777777777755422 4456777777
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 552 LKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 552 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
|+.+++.++.++.+...+|.++.+|+.+.+..+ ++.+....| .++.+|+.+++..+ ++ .|....|.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF--~~C~~L~~i~ip~~-v~-~I~~~aF~~c~ 356 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF--KNCKALSTISYPKS-IT-LIESGAFEGSS 356 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCCCCCCTT-CC-EECTTTTTTSS
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh--hCCCCCCEEEECCc-cC-EEchhHhhCCC
Confidence 777777777777776777777777777777654 544433333 66777777777554 44 56666665543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.74 E-value=6.1e-07 Score=95.96 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=55.4
Q ss_pred hhhcCCcccccccccccccccCChhhccccccccEEECCCCcccccCcccccCCCCccEEECCCCcc---ChhhhhCCCC
Q 047451 475 SICSLNGLYALDLSYNNLSGMLPACLGNFSVQLWVLKLQGNKFHGFIPETFNKGTNLRMIDFSNNLL---VPKSLANCVK 551 (778)
Q Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~l~~l~~ 551 (778)
+|.++..|+.+.+..+ ++.....++.... +|+.+.+..+ +.......|.++.+|+.+.+.++.+ -..+|.++.+
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred cccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 3444444444444433 2222223333333 4555555432 3334444555566666666655544 3455666666
Q ss_pred CCEEeCCCCcCCCCCcccccCCCCCCEEEccCcccccc
Q 047451 552 LKFLDLGDNQITDFFPSWLGTLPELEVLILKSNNFHGV 589 (778)
Q Consensus 552 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 589 (778)
|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 666666533 55555566666666666666544 4433
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=7.6e-09 Score=108.98 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=34.2
Q ss_pred chhHHhhcCCCCCEEEccCccCCCCcchhhcCCCCCCEEEcccCcCCCCCChhhc--CCCCCCEEecc
Q 047451 157 GLANLAENLTNLKALDLINVHISSTVPHTLANLSSLHFLSLSGCRLQGEFPQEIF--QLPNLQFLGVM 222 (778)
Q Consensus 157 ~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~ 222 (778)
.+...+..+|+|+.|++++|.-. ..+. +. +++|++|++..+.+.......+. .+++|+.|+|+
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 35555666666777766665211 1122 22 56777777776665533222332 56677777664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=2.6e-08 Score=104.91 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=30.3
Q ss_pred cccccEEeccCCcCCCCCchhHHhcCCCCccEEeccCC--c------cccccCCCCCCCCCCCCEEEcCCCcCc
Q 047451 382 QDQLISLDLSSNMIAGKIPEWLFSAGTNSLQYLNLSYN--L------LMHFEHNLPVLPWNNLGALDLRFNKLQ 447 (778)
Q Consensus 382 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~L~~L~Ls~n--~------l~~~~~~~~~~~~~~L~~L~L~~n~l~ 447 (778)
.++|++|++..+.+.......+....+++|+.|+|+.+ . +..+........+++|+.|++++|.+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 45666666666655422222222224566666665421 1 111111111123466666666666654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=1.2e-09 Score=108.90 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=89.4
Q ss_pred CCCccCceeeCCCCCcEEEEEcCCC---CCccccCCccccccC---------CCCCEEeCCCCCCCCCCCchhhcCCCCC
Q 047451 45 DCCLWDGVKCNEDTGHVVELDLASS---CLYGSVNSTSSLFQL---------VHLQRLSLFDNNFNFSEIPSEILNFSRL 112 (778)
Q Consensus 45 ~~c~w~~v~c~~~~~~v~~L~Ls~~---~l~~~~~~~~~l~~l---------~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 112 (778)
..|.|.|+.|.+...+|..+...+. .+.+.+.+ ..+..+ ..-+.|+|+. +...+.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~-~~~~~Lk~~l~~ryn~~~~~LdLs~-----------l~~dp~L 143 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKP-EQVEQLKLIMSKRYDGSQQALDLKG-----------LRSDPDL 143 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCH-HHHHHHHHHHHHTEETTTTEEECTT-----------GGGCHHH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCH-HHHHHHHHHHHhccchhccccCHHH-----------cCCCcch
Confidence 4678999999876556655544331 11122211 011111 1233444443 2222223
Q ss_pred CE--EECCCCCCCccCch----hhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCCCCcchhh
Q 047451 113 TH--LNLSRSYFSGQIPA----ELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL 186 (778)
Q Consensus 113 ~~--L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 186 (778)
+. ++++.|... .++. ...++++|++|+|++|+|+.+ ..++..+..+++|++|+|++|.+.+. ..+
T Consensus 144 ~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 144 VAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp HHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCC------GGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred hhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCC------ccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 33 455666432 2222 224577888888888877655 45666777888888888888888764 233
Q ss_pred cCCC--CCCEEEcccCcCCCCCCh-------hhcCCCCCCEEe
Q 047451 187 ANLS--SLHFLSLSGCRLQGEFPQ-------EIFQLPNLQFLG 220 (778)
Q Consensus 187 ~~l~--~L~~L~Ls~n~l~~~~~~-------~l~~l~~L~~L~ 220 (778)
..+. +|++|++++|.+.+.+|. .+..+++|+.||
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3333 888888888888765552 356778888776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=3.2e-08 Score=93.93 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=67.9
Q ss_pred ccccCCCCCEEeCCCC-CCCCC---CCchhhcCCCCCCEEECCCCCCCcc----CchhhhCCCCCCEEECcCCCCCcccc
Q 047451 80 SLFQLVHLQRLSLFDN-NFNFS---EIPSEILNFSRLTHLNLSRSYFSGQ----IPAELLELSNLEVLDLSFNTFDNFFL 151 (778)
Q Consensus 80 ~l~~l~~L~~L~Ls~n-~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~~~~ 151 (778)
.+...+.|++|+|++| .+... .+...+...++|++|+|++|.+.+. +...+...+.|++|+|++|.|++...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455667777777777 65421 1233445566777777777776542 23334455667777777776654311
Q ss_pred cccCCchhHHhhcCCCCCEEEc--cCccCCCCc----chhhcCCCCCCEEEcccCcCC
Q 047451 152 KLQKPGLANLAENLTNLKALDL--INVHISSTV----PHTLANLSSLHFLSLSGCRLQ 203 (778)
Q Consensus 152 ~~~~~~l~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~ 203 (778)
..+...+...++|++|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 111 ----~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 ----LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp ----HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred ----HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 124445556666677776 566665432 233444466666666666553
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=1.5e-07 Score=89.31 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=82.7
Q ss_pred chhhcCCCCCCEEECCCC-CCCcc----CchhhhCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCcc
Q 047451 103 PSEILNFSRLTHLNLSRS-YFSGQ----IPAELLELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVH 177 (778)
Q Consensus 103 ~~~~~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~ 177 (778)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.|++... ..+...+...++|++|+|++|.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~----~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVA----FALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHH----HHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHH----HHHHHHHHhCCCcCEEECcCCc
Confidence 345677889999999999 88753 34456677899999999998765422 2355667777889999999998
Q ss_pred CCCC----cchhhcCCCCCCEEEc--ccCcCCCC----CChhhcCCCCCCEEecccC
Q 047451 178 ISST----VPHTLANLSSLHFLSL--SGCRLQGE----FPQEIFQLPNLQFLGVMKN 224 (778)
Q Consensus 178 l~~~----~~~~~~~l~~L~~L~L--s~n~l~~~----~~~~l~~l~~L~~L~L~~n 224 (778)
+... +...+...++|++|++ ++|.+... +...+...+.|++|++++|
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 8763 3455666778888888 77877643 2233444556666666655
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=1.5e-07 Score=93.70 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=71.0
Q ss_pred CCCccE--EECCCCcc------ChhhhhCCCCCCEEeCCCCcCCCCC--cccccCCCCCCEEEccCccccccCCCCcccc
Q 047451 528 GTNLRM--IDFSNNLL------VPKSLANCVKLKFLDLGDNQITDFF--PSWLGTLPELEVLILKSNNFHGVIEEPNACF 597 (778)
Q Consensus 528 l~~L~~--L~L~~N~l------~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 597 (778)
.+.|+. ++++.|+. .+....++++|++|+|++|+|+++. +..+..+++|+.|+|++|+|++.. .+ .
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l--~ 215 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER--EL--D 215 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GG--G
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch--hh--h
Confidence 344444 56666644 2223356889999999999998853 466678999999999999998762 22 3
Q ss_pred ccC--cCcEEEcCCCcCCCCCCh------HHHhccccccccc
Q 047451 598 EFV--KLRIIDLSHNRFAGNLPS------KHFECWNAMKDVN 631 (778)
Q Consensus 598 ~l~--~L~~L~ls~N~l~~~ip~------~~~~~~~~l~~l~ 631 (778)
.+. +|++|+|++|++++.+|. .++..++.|+.|+
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 333 899999999999987873 3466677776665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=3.5e-06 Score=77.64 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=16.1
Q ss_pred CCCEEECCCCCCCccCchhhhCCCCCCEEECcCC
Q 047451 111 RLTHLNLSRSYFSGQIPAELLELSNLEVLDLSFN 144 (778)
Q Consensus 111 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 144 (778)
+|++||+++|.+++.--..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444555544444433333444555555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=4.2e-06 Score=77.11 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCCEEeccCCcCCccCcccccCCCCCCeEeccCCCCCcccCCccccCC----CCCCeecccccc-cCCchhhhccCCCC
Q 047451 238 SPLEDLRLSYTRFSGKIPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNL----ASLKTLEISSFN-FSGTLQASLGNLTQ 312 (778)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 312 (778)
..|++||+++|.+++.--..+..+++|++|+|++|..+++.....++.+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4577777777777666556667777788888877666766554455553 357777777764 66554455566666
Q ss_pred CCcccccccc
Q 047451 313 LDSLTISDSN 322 (778)
Q Consensus 313 L~~L~L~~n~ 322 (778)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777766663
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=5.9e-05 Score=70.82 Aligned_cols=89 Identities=11% Similarity=0.088 Sum_probs=44.7
Q ss_pred cccCCCCccEEECCCCcc-------ChhhhhCCCCCCEEeCCCCcCCCC----CcccccCCCCCCEEEccCcc---cccc
Q 047451 524 TFNKGTNLRMIDFSNNLL-------VPKSLANCVKLKFLDLGDNQITDF----FPSWLGTLPELEVLILKSNN---FHGV 589 (778)
Q Consensus 524 ~~~~l~~L~~L~L~~N~l-------~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~---l~~~ 589 (778)
.+..-+.|+.|+|++|.| +...+..-+.|++|+|++|.|.+. +.+++...+.|++|+|++|. +...
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 334444555555555555 234455556666666666666543 22334455567777776542 2211
Q ss_pred CCCCc--cccccCcCcEEEcCCCcC
Q 047451 590 IEEPN--ACFEFVKLRIIDLSHNRF 612 (778)
Q Consensus 590 ~~~~~--~~~~l~~L~~L~ls~N~l 612 (778)
....+ ....-++|+.|+++.|.+
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 00000 113445677777776654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.38 E-value=0.00029 Score=61.80 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=55.8
Q ss_pred CEEeCCCCcCC-CCCcccccCCCCCCEEEccCccccccCCCCccccccCcCcEEEcCCCcCCCCCChHHHhccc
Q 047451 553 KFLDLGDNQIT-DFFPSWLGTLPELEVLILKSNNFHGVIEEPNACFEFVKLRIIDLSHNRFAGNLPSKHFECWN 625 (778)
Q Consensus 553 ~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ls~N~l~~~ip~~~~~~~~ 625 (778)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..+ ..+++|+.|+|++|++.|.+...||..|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~NP~~CdC~l~~l~~wl 80 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLL--DALPALRTAHLGANPWRCDCRLVPLRAWL 80 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTG--GGCTTCCEEECCSSCCBCSGGGHHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhh--hhccccCEEEecCCCeeccCccHHHHHHH
Confidence 47888999987 23454332 369999999999998876665 78999999999999999999988888774
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.25 E-value=0.00035 Score=65.52 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=19.9
Q ss_pred hCCCCCCEEECcCCCCCcccccccCCchhHHhhcCCCCCEEEccCccCC
Q 047451 131 LELSNLEVLDLSFNTFDNFFLKLQKPGLANLAENLTNLKALDLINVHIS 179 (778)
Q Consensus 131 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 179 (778)
..-..|+.|+|++|.|++... ..+.+.+..-+.|++|+|++|.|.
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga----~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEA----RGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHH----TTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hhCCCcCEEEccCCCCChHHH----HHHHHHHhcCCccCeEecCCCcCC
Confidence 333445555555554433211 233444444444555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.62 E-value=0.013 Score=51.10 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=26.6
Q ss_pred EEEcCCCcCc-CCCCchhhcccceeEecCCccccCCchhhhcCCcccccccccccc
Q 047451 438 ALDLRFNKLQ-GPLPIPISVLTSSYLVSNNQLTGEIPPSICSLNGLYALDLSYNNL 492 (778)
Q Consensus 438 ~L~L~~n~l~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 492 (778)
.++.+++.++ ..+|..++..++.|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444555443 233333444444444444444444444455555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.79 E-value=30 Score=27.85 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=17.6
Q ss_pred CcccccCCCCCCeEeccCCCCCcccCCccccCCCCCCeeccc
Q 047451 254 IPSSLGNLTKLEDLYLSGGNGFSNELPPSIGNLASLKTLEIS 295 (778)
Q Consensus 254 ~~~~~~~l~~L~~L~L~~~n~l~~~~~~~l~~l~~L~~L~L~ 295 (778)
....|..|.+|+.+.+- ..++......|.++.+|+.+.+.
T Consensus 12 ~~~aF~~c~~L~~i~iP--~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQ--PNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSCTTTTCTTCCCEEEC--TTSSCCCTTSSTTCTTCCCEEEC
T ss_pred cHHHhcCCCCCcEEEcC--CchheEcHHHHhccCCccEEEEc
Confidence 33444445555555444 23333333444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=40.19 E-value=66 Score=25.74 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=5.6
Q ss_pred cccCCCCCCeEecc
Q 047451 257 SLGNLTKLEDLYLS 270 (778)
Q Consensus 257 ~~~~l~~L~~L~L~ 270 (778)
.|..|.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 33344444444433
Done!