BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047454
         (339 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YVT|A Chain A, Crystal Structure Of Aq_1956
          Length = 260

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 15/105 (14%)

Query: 169 EEHKELVKEGEKWMKETATACSVVAAFI--ITVMFAAAFTVPGGNDSRGIPNFLH----- 221
           E +++++ E E ++ ET      +  F   I  +    F VPG ND+  +  FL      
Sbjct: 61  EPNRKVIHENEHYIIET------LDKFFREIGELGVKTFVVPGKNDA-PLKIFLRAAYEA 113

Query: 222 ESSFI-IFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPR 265
           E+++  I  + +  + +     V+ F G+LT    EEDF+L  PR
Sbjct: 114 ETAYPNIRVLHEGFAGWRGEFEVIGFGGLLTEHEFEEDFVLKYPR 158


>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
          Length = 106

 Score = 30.0 bits (66), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%)

Query: 11 HKEKVRNMQAVEIVRIICKGVIWNDPQNQQLLKKAFFKAATLGISKFVQEIIAAYKGSVY 70
          H  K +  +AVEIV+ + K       Q++QL    +FK AT+G     +  +  + G   
Sbjct: 2  HMSKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAK 61

Query: 71 WE 72
          W+
Sbjct: 62 WD 63


>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
           Anthracis (Ba1797)
 pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
           Anthracis (Ba1797)
 pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
           Anthracis (Ba1797)
          Length = 255

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 196 IITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYS 255
           I+ +    +  + GGN  RG    L E   I    +D +    +II+ LM  G+LTS+ +
Sbjct: 47  IVDLGIEVSIVIGGGNIFRG---HLAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTN 103

Query: 256 EE-DFLLSLP 264
           +E   + S+P
Sbjct: 104 KEVRVMTSIP 113


>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
           Its Inward- Facing Conformation
          Length = 587

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 175 VKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGGNDSR 214
           +KE  KW +E AT   +V A  I  +     ++P G DSR
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSR 472


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,411,910
Number of Sequences: 62578
Number of extensions: 358494
Number of successful extensions: 991
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)