BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047454
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 142/306 (46%), Gaps = 37/306 (12%)
Query: 27 ICKGVIWNDPQNQQLLKKAFFKAATLGI----SKFVQEIIAAYKGSVYWEDENKHTIFHV 82
+ K ++ DPQ + + K A + + S+ V+ ++ A V D++ +T HV
Sbjct: 247 VIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHV 306
Query: 83 AVLHRRAEVFNLIYS-STFKSNWLGSNDNIRNNILHFGGKLVPSSEVAGAALQMQRKLEW 141
A +RAE+ L+ S +N L + +I + +P SE + + +
Sbjct: 307 ATRKKRAEIVELLLSLPDTNANTLTRDHKTALDI----AEGLPLSEESSYIKECLARSGA 362
Query: 142 FKAVE-NLVHPFLREAVNN---------EQTPR-----EVFTEEHKELVKEGEKWMKETA 186
+A E N LR V EQT R ++E ++L +EG +
Sbjct: 363 LRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREG---INNAT 419
Query: 187 TACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMF 246
+ +VVA TV FAA FTVPGG+++ G + +SF IF + +AL+LF+S+ V++
Sbjct: 420 NSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLAVVVVQ 479
Query: 247 LGILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMM--VSFGATIYLVLFSTWKWVFIPI 304
+ ++ E K ++++I +ASM V+F A+ Y+V+ +W +
Sbjct: 480 ITLVRGETKAE--------KRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELV 531
Query: 305 TLVGCV 310
T+VG V
Sbjct: 532 TVVGGV 537
>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana
GN=At2g01680 PE=1 SV=1
Length = 532
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 27/271 (9%)
Query: 56 KFVQEIIAAYKGSVYWEDENKHTIFHVAVLHRRAEVFNLIYSSTFKSNWLGSNDNIRNNI 115
+ V+EI+ A + D +T H+A R ++ +L+ TF + + + +N +
Sbjct: 210 EVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLL--TFTAIEVNAINNQKETA 267
Query: 116 LHFGGKLVPSS---EVAGAALQMQRKLEWF-----------KAVENLVHPFLREAVNNEQ 161
+ KL S E+ A ++ K F +AV ++ H + + NE+
Sbjct: 268 MDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEK 327
Query: 162 TPREVFTEEHKELVKEGEKWMKETATACSVVAAFIITVMFAAAFTVPGG----NDSRGIP 217
T R V + KEL K + ++ T + +VVA ++ F A F +PG G
Sbjct: 328 TNRRV-SGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQA 386
Query: 218 NFLHESSFIIFAVSDALSLFSSIISVLMFLGILTSRYSEEDFLLSLPRKLIIDLITMFFS 277
N + F +F + +A SLF S+ V++ + ++ + ++S+ KL M+ +
Sbjct: 387 NIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKL------MWAA 440
Query: 278 IASMMVSFGATIYLVLFSTWKWVFIPITLVG 308
A +F A + V+ W+ I ITL+G
Sbjct: 441 CACTFGAFLAIAFAVVGKGNSWMAITITLLG 471
>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana
GN=At5g02620 PE=1 SV=1
Length = 524
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 127/296 (42%), Gaps = 52/296 (17%)
Query: 50 ATLGISKFVQEIIAAYKGSVYWEDENK-HTIFHVAVLHRRAEVFNLIYS----STFKSNW 104
A G + + +++ GS+ +NK +T H+AV RAE+ + S N
Sbjct: 200 AVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNK 259
Query: 105 LGSN--DNIRNNILHFGGKLVPSSEVAGAALQMQRKLEWFKAVE-NLVHPFLREAVNNEQ 161
G D LH ++VP + G +Q R ++ + VE + L+E V+
Sbjct: 260 SGETALDIAEKTGLH---EIVPLLQKIG--MQNARSIKPAEKVEPSGSSRKLKETVS--- 311
Query: 162 TPREVFTEEHKELVKEGE-----------------KWMKETATACSVVAAFIITVMFAAA 204
E+ E H +L + G + + + ++VA I TV FAA
Sbjct: 312 ---EIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAI 368
Query: 205 FTVPG--GNDSRGIPN--FLHES------SFIIFAVSDALSLFSSIISVLMFLGILTSRY 254
F VPG +D + +P L E+ F+IF V D+ +LF S+ V++ ++
Sbjct: 369 FNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIER 428
Query: 255 SEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLVGCV 310
+ ++++ KL M+ + + V+F + ++V+ K + + +T +G +
Sbjct: 429 RAKKQMMAIINKL------MWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGAL 478
>sp|Q48768|CHEA_LISMO Chemotaxis protein CheA OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=cheA PE=3 SV=2
Length = 618
Score = 35.0 bits (79), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 89 AEVFNLIYSSTFK-----SNWLGSN---DNIRNNILHFGGKL-VPSSEVAGAALQMQ 136
AE+F+L++ S F S+ G D +RN IL GGK+ V SSE AG+ +++
Sbjct: 427 AEIFDLLFDSGFSTADQVSDLSGRGVGLDVVRNTILKIGGKISVESSENAGSTFRIE 483
>sp|P36793|VE2_HPV40 Regulatory protein E2 OS=Human papillomavirus type 40 GN=E2 PE=3
SV=1
Length = 370
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 115 ILHFGGKLVPSSEV----AGAALQMQRKLEWFKAVENLVHPFLREAVNNEQTPREVFTEE 170
I H G ++VPS +V A AA++MQ LE + E V P+ + T +E++ E
Sbjct: 51 IKHLGHQVVPSLDVSKAKAHAAIEMQMCLESLQNTEYNVEPWTL-----QDTSQELWLAE 105
Query: 171 HKELVKEGEKWMKETATACSVVAAFIIT------VMFAAAFT-VPGGNDSRGIPNFLHES 223
K+ K+G K + E C+ A T V A+T V G D +G+ +H
Sbjct: 106 PKKCFKKGGKTV-EVRFDCNETNAMHYTLWTTVYVQVDDAWTKVKGQVDYKGLSYTVHGC 164
Query: 224 S--FIIFA 229
+ ++ FA
Sbjct: 165 TTYYVDFA 172
>sp|Q7YTA6|PHG1C_DICDI Putative phagocytic receptor 1c OS=Dictyostelium discoideum
GN=phg1c PE=2 SV=1
Length = 655
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 188 ACSVVAAFIITVMFAAAFTVPGGNDSRGIPNFLHESSFIIFAVSDALSLFSSIISVLMFL 247
+VA+ I ++F+ A G S P + +S +IF+ + + +SS+ + +M L
Sbjct: 366 GVQIVASLFILMVFSVA-----GLTSIATPGGMAIASILIFSFTGIFNGYSSMRTYIM-L 419
Query: 248 GILTSRYSEEDFLLSLPRKLIIDLITMFFSIASMMVSFGATIYLVLFSTWKWVFIPITLV 307
G Y+ +P +++ + +F + S ++GA+I V F W+ +
Sbjct: 420 GGTRKLYNSVITTTLIPFTILLLMFIGYFQVWSNKFTYGASIGTVFFILAMWLLV----- 474
Query: 308 GCVPVTLFA 316
CVP +L +
Sbjct: 475 -CVPCSLLS 482
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,651,894
Number of Sequences: 539616
Number of extensions: 4666155
Number of successful extensions: 16127
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 16119
Number of HSP's gapped (non-prelim): 14
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)