Query 047455
Match_columns 367
No_of_seqs 274 out of 1091
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 19:47:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.9E-24 1.3E-28 164.0 6.4 60 125-184 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 84.2 0.68 2.3E-05 36.7 3.1 24 121-144 3-27 (77)
3 1u3e_M HNH homing endonuclease 64.5 1.1 3.8E-05 39.0 -0.6 38 126-166 109-146 (174)
4 1z1b_A Integrase; protein-DNA 60.9 8.6 0.00029 35.1 4.7 41 128-172 15-55 (356)
5 3jtz_A Integrase; four strande 46.7 41 0.0014 26.4 5.8 44 129-172 28-75 (88)
6 3ju0_A Phage integrase; four s 28.9 97 0.0033 25.2 5.6 48 129-176 28-80 (108)
7 1x60_A Sporulation-specific N- 27.3 46 0.0016 24.5 3.1 23 147-169 45-67 (79)
8 1uta_A FTSN, MSGA, cell divisi 23.5 67 0.0023 24.0 3.4 24 146-169 44-67 (81)
9 1b69_A Protein (integrase); in 23.4 51 0.0017 25.4 2.7 26 124-150 10-35 (69)
10 2ftc_I Mitochondrial ribosomal 16.7 1.7E+02 0.0058 24.3 4.7 36 136-174 79-115 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.89 E-value=3.9e-24 Score=163.96 Aligned_cols=60 Identities=63% Similarity=1.145 Sum_probs=57.0
Q ss_pred ceeEEEECCCCcEEEEEecCCC-CeEEeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCC
Q 047455 125 KFRGVRQRPWGKWAAEIRDPAR-RVRLWLGTYDTAEEAARVYDNAAIKLRGPDALTNFSTP 184 (367)
Q Consensus 125 ~yRGVr~r~~GKW~AeIr~~~~-~kri~LGtFdT~EeAArAYD~AAikl~G~~A~tNFp~s 184 (367)
+||||++++||||+|+|+++.. |+++|||+|+|+||||+|||.|+++++|..|.+|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999874 79999999999999999999999999999999999974
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=84.20 E-value=0.68 Score=36.66 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=19.4
Q ss_pred CCCCceeEEEECCC-CcEEEEEecC
Q 047455 121 TNGKKFRGVRQRPW-GKWAAEIRDP 144 (367)
Q Consensus 121 ~~tS~yRGVr~r~~-GKW~AeIr~~ 144 (367)
...|+|.||++.+. +.|.|.-.+.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~ 27 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDG 27 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEET
T ss_pred CCCCCCCcEEeecCCceEEEEEecC
Confidence 35699999987766 9999998873
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=64.46 E-value=1.1 Score=38.98 Aligned_cols=38 Identities=8% Similarity=-0.135 Sum_probs=28.4
Q ss_pred eeEEEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHH
Q 047455 126 FRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYD 166 (367)
Q Consensus 126 yRGVr~r~~GKW~AeIr~~~~~kri~LGtFdT~EeAArAYD 166 (367)
++||.+...++|.+.|.. . +.++||.|.+.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 456644333678888885 3 5678999999999999965
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=60.87 E-value=8.6 Score=35.07 Aligned_cols=41 Identities=20% Similarity=0.077 Sum_probs=30.5
Q ss_pred EEEECCCCcEEEEEecCCCCeEEeccCCCCHHHHHHHHHHHHHHH
Q 047455 128 GVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKL 172 (367)
Q Consensus 128 GVr~r~~GKW~AeIr~~~~~kri~LGtFdT~EeAArAYD~AAikl 172 (367)
||++++.|.|..+.. ..|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 577778899987754 5788899996 8888877766554444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=46.74 E-value=41 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=29.7
Q ss_pred EEECCCC--cEEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHH
Q 047455 129 VRQRPWG--KWAAEIRDPARRVRLWLGTYD--TAEEAARVYDNAAIKL 172 (367)
Q Consensus 129 Vr~r~~G--KW~AeIr~~~~~kri~LGtFd--T~EeAArAYD~AAikl 172 (367)
++-++.| .|.-+.+...+.+++-||.|. |.++|...-+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444553 488887754445778899997 6788877766665544
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=28.91 E-value=97 Score=25.16 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=30.4
Q ss_pred EEECCCC--cEEEEEecCCCCeEEeccCCC--CHHHHHHHHHHHHHHH-hCCC
Q 047455 129 VRQRPWG--KWAAEIRDPARRVRLWLGTYD--TAEEAARVYDNAAIKL-RGPD 176 (367)
Q Consensus 129 Vr~r~~G--KW~AeIr~~~~~kri~LGtFd--T~EeAArAYD~AAikl-~G~~ 176 (367)
++-.+.| .|.-+.+...+.+++-||.|. |..+|...-+.+...+ .|.+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 3444554 488887753344678899996 6777777666655444 4444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.28 E-value=46 Score=24.52 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=18.5
Q ss_pred CeEEeccCCCCHHHHHHHHHHHH
Q 047455 147 RVRLWLGTYDTAEEAARVYDNAA 169 (367)
Q Consensus 147 ~kri~LGtFdT~EeAArAYD~AA 169 (367)
.-|+++|-|.+.++|..+-.+..
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHH
Confidence 36899999999999988865543
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=23.51 E-value=67 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=19.1
Q ss_pred CCeEEeccCCCCHHHHHHHHHHHH
Q 047455 146 RRVRLWLGTYDTAEEAARVYDNAA 169 (367)
Q Consensus 146 ~~kri~LGtFdT~EeAArAYD~AA 169 (367)
.--|+++|-|.+.++|..+-++..
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLK 67 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHH
Confidence 446899999999999988865543
No 9
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=23.41 E-value=51 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.041 Sum_probs=20.1
Q ss_pred CceeEEEECCCCcEEEEEecCCCCeEE
Q 047455 124 KKFRGVRQRPWGKWAAEIRDPARRVRL 150 (367)
Q Consensus 124 S~yRGVr~r~~GKW~AeIr~~~~~kri 150 (367)
--+.|+.+|+.|+|+..+.+. .|++.
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~-~Gkr~ 35 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDS-FGEPQ 35 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECT-TSSEE
T ss_pred ccCCCeEEccCCcEEEEEEcC-CCCEE
Confidence 457789999999999999884 34443
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=16.74 E-value=1.7e+02 Score=24.28 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=27.8
Q ss_pred cEEEEEecCCCCeEE-eccCCCCHHHHHHHHHHHHHHHhC
Q 047455 136 KWAAEIRDPARRVRL-WLGTYDTAEEAARVYDNAAIKLRG 174 (367)
Q Consensus 136 KW~AeIr~~~~~kri-~LGtFdT~EeAArAYD~AAikl~G 174 (367)
-|+|.|. -|+-+ -++...+++.|..|..+|+.+|=+
T Consensus 79 ~wva~Vk---~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVK---AGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEEC---CCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 4999998 45444 466668999999999999988744
Done!