BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047456
         (71 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XY7|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis
          Thaliana At5g48480
 pdb|1XY7|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis
          Thaliana At5g48480
 pdb|2Q48|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
          Gene Product From Arabidopsis Thaliana At5g48480
 pdb|2Q48|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
          Gene Product From Arabidopsis Thaliana At5g48480
          Length = 166

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)

Query: 10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCN 63
          F   K  LLVEA K   +V FY+ AFGA+E   ++  KRK +QEL   L  + N
Sbjct: 23 FTEFKQXLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELN 76


>pdb|1SK9|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
          Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKA|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
          Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKB|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
          Phytase Revealing Its Enzymatic Dynamics
 pdb|1SK8|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
          Phytase Revealing Its Enzymatic Dynamics
          Length = 439

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 51 EQELNSRLPKDCNTTLAQL 69
          E  ++S+LPKDC  TL Q+
Sbjct: 33 ELSVSSKLPKDCRITLVQV 51


>pdb|1QWO|A Chain A, Crystal Structure Of A Phosphorylated Phytase From
          Aspergillus Fumigatus, Revealing The Structural Basis
          For Its Heat Resilience And Catalytic Pathway
          Length = 442

 Score = 26.2 bits (56), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 51 EQELNSRLPKDCNTTLAQL 69
          E  ++S+LPKDC  TL Q+
Sbjct: 36 ELSVSSKLPKDCRITLVQV 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.125    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,536,498
Number of Sequences: 62578
Number of extensions: 37445
Number of successful extensions: 72
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)