Query 047456
Match_columns 71
No_of_seqs 104 out of 168
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 11:14:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047456.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047456hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2764 PhnB Uncharacterized p 99.5 2.1E-14 4.5E-19 98.3 5.2 50 12-69 1-60 (136)
2 PRK10148 hypothetical protein; 99.4 9.8E-13 2.1E-17 88.6 5.6 57 12-69 2-71 (147)
3 cd06588 PhnB_like Escherichia 99.2 2.5E-11 5.5E-16 77.3 5.5 56 13-69 1-59 (128)
4 PF06983 3-dmu-9_3-mt: 3-demet 99.0 5.9E-10 1.3E-14 72.9 5.3 56 12-69 2-58 (116)
5 cd08355 Glo_EDI_BRP_like_14 Th 98.8 8.1E-09 1.7E-13 63.4 5.2 46 13-67 1-46 (122)
6 cd07246 Glo_EDI_BRP_like_8 Thi 98.7 6.4E-08 1.4E-12 58.2 5.3 47 11-66 1-47 (122)
7 cd08359 Glo_EDI_BRP_like_22 Th 97.6 8.2E-05 1.8E-09 45.0 3.8 30 11-42 1-30 (119)
8 cd08350 BLMT_like BLMT, a bleo 97.2 0.00048 1E-08 42.4 3.4 30 12-44 3-32 (120)
9 cd08349 BLMA_like Bleomycin bi 97.1 0.00076 1.6E-08 39.8 3.5 28 14-43 1-28 (112)
10 TIGR00068 glyox_I lactoylgluta 97.1 0.0017 3.6E-08 42.0 5.2 42 6-49 12-53 (150)
11 PRK10291 glyoxalase I; Provisi 97.0 0.0014 3.1E-08 40.8 4.0 30 17-48 2-31 (129)
12 PF00903 Glyoxalase: Glyoxalas 96.9 0.0033 7.1E-08 37.2 4.8 26 17-44 7-32 (128)
13 cd08354 Glo_EDI_BRP_like_13 Th 96.7 0.0029 6.2E-08 38.0 3.9 28 13-42 2-29 (122)
14 PLN03042 Lactoylglutathione ly 96.7 0.0033 7.2E-08 44.2 4.5 40 8-49 24-63 (185)
15 cd08358 Glo_EDI_BRP_like_21 Th 96.7 0.0037 8.1E-08 41.6 4.5 32 15-48 6-37 (127)
16 cd07238 Glo_EDI_BRP_like_5 Thi 96.6 0.0027 5.8E-08 38.2 3.3 27 13-41 2-28 (112)
17 cd08346 PcpA_N_like N-terminal 96.6 0.0033 7E-08 37.5 3.5 30 16-47 6-35 (126)
18 PLN02367 lactoylglutathione ly 96.6 0.0041 8.8E-08 46.1 4.6 44 5-50 69-112 (233)
19 cd09011 Glo_EDI_BRP_like_23 Th 96.5 0.0044 9.6E-08 37.9 3.8 28 13-42 4-31 (120)
20 cd07233 Glyoxalase_I Glyoxalas 96.4 0.0068 1.5E-07 36.3 4.0 29 17-47 6-34 (121)
21 cd08352 Glo_EDI_BRP_like_1 Thi 96.4 0.0064 1.4E-07 36.1 3.8 26 17-44 9-34 (125)
22 cd08342 HPPD_N_like N-terminal 96.4 0.006 1.3E-07 38.7 3.8 29 16-46 5-33 (136)
23 cd08356 Glo_EDI_BRP_like_17 Th 96.3 0.0042 9E-08 38.5 2.8 28 12-42 2-29 (113)
24 cd08343 ED_TypeI_classII_C C-t 96.2 0.0078 1.7E-07 37.7 3.8 29 16-46 4-32 (131)
25 cd07241 Glo_EDI_BRP_like_3 Thi 96.2 0.0095 2.1E-07 35.6 3.9 28 16-45 6-33 (125)
26 cd07243 2_3_CTD_C C-terminal d 96.2 0.011 2.4E-07 38.4 4.5 30 17-48 12-41 (143)
27 PF12681 Glyoxalase_2: Glyoxal 96.2 0.011 2.3E-07 34.9 4.0 24 17-42 1-24 (108)
28 TIGR03081 metmalonyl_epim meth 96.1 0.0078 1.7E-07 36.3 3.2 25 17-43 7-31 (128)
29 cd07263 Glo_EDI_BRP_like_16 Th 96.1 0.012 2.7E-07 34.4 3.9 26 17-44 4-29 (119)
30 cd07264 Glo_EDI_BRP_like_15 Th 96.0 0.017 3.7E-07 34.8 4.2 25 16-42 5-29 (125)
31 cd07253 Glo_EDI_BRP_like_2 Thi 95.8 0.016 3.6E-07 34.3 3.8 27 16-44 8-34 (125)
32 cd09012 Glo_EDI_BRP_like_24 Th 95.8 0.014 3E-07 35.9 3.3 30 14-46 3-32 (124)
33 COG0346 GloA Lactoylglutathion 95.7 0.017 3.8E-07 33.0 3.3 29 16-46 7-35 (138)
34 TIGR03645 glyox_marine lactoyl 95.6 0.014 3E-07 38.8 3.2 25 16-42 9-33 (162)
35 cd08345 Fosfomycin_RP Fosfomyc 95.6 0.019 4.1E-07 34.2 3.3 25 17-43 4-28 (113)
36 PF13669 Glyoxalase_4: Glyoxal 95.6 0.015 3.3E-07 35.8 3.0 32 17-50 5-36 (109)
37 PRK11478 putative lyase; Provi 95.4 0.02 4.4E-07 34.9 3.0 24 17-42 12-35 (129)
38 cd07254 Glo_EDI_BRP_like_20 Th 95.3 0.03 6.5E-07 33.9 3.7 28 13-42 3-30 (120)
39 cd07257 THT_oxygenase_C The C- 95.3 0.029 6.4E-07 36.7 3.7 28 17-46 7-34 (153)
40 cd07256 HPCD_C_class_II C-term 95.2 0.03 6.6E-07 37.0 3.8 30 17-48 9-38 (161)
41 COG3865 Uncharacterized protei 95.2 0.052 1.1E-06 38.7 4.9 52 11-67 4-60 (151)
42 cd08357 Glo_EDI_BRP_like_18 Th 95.2 0.038 8.3E-07 33.1 3.7 23 17-41 5-27 (125)
43 cd07262 Glo_EDI_BRP_like_19 Th 95.1 0.031 6.8E-07 33.9 3.3 25 16-42 5-32 (123)
44 cd09014 BphC-JF8_C_like C-term 95.0 0.039 8.4E-07 36.8 3.8 31 16-48 11-41 (166)
45 cd07251 Glo_EDI_BRP_like_10 Th 95.0 0.027 5.8E-07 33.5 2.6 25 16-42 3-27 (121)
46 cd08351 ChaP_like ChaP, an enz 95.0 0.038 8.2E-07 34.1 3.4 25 15-41 8-32 (123)
47 cd09013 BphC-JF8_N_like N-term 94.9 0.036 7.9E-07 33.9 3.2 25 16-42 11-35 (121)
48 TIGR03211 catechol_2_3 catecho 94.9 0.042 9.2E-07 39.1 4.0 31 17-49 151-181 (303)
49 cd07252 BphC1-RGP6_N_like N-te 94.8 0.03 6.5E-07 34.5 2.7 25 16-42 7-31 (120)
50 cd07265 2_3_CTD_N N-terminal d 94.7 0.056 1.2E-06 32.9 3.6 26 16-43 9-34 (122)
51 cd07245 Glo_EDI_BRP_like_9 Thi 94.7 0.044 9.5E-07 31.4 3.0 28 17-46 6-33 (114)
52 cd08362 BphC5-RrK37_N_like N-t 94.6 0.055 1.2E-06 32.5 3.3 25 16-42 8-32 (120)
53 cd07240 ED_TypeI_classII_N N-t 94.5 0.075 1.6E-06 31.5 3.7 25 16-42 7-31 (117)
54 cd08348 BphC2-C3-RGP6_C_like T 94.5 0.083 1.8E-06 32.6 4.0 26 16-43 6-31 (134)
55 PLN02300 lactoylglutathione ly 94.4 0.071 1.5E-06 38.3 4.1 30 16-47 29-58 (286)
56 cd07261 Glo_EDI_BRP_like_11 Th 94.2 0.037 8.1E-07 33.1 2.1 24 17-42 4-27 (114)
57 TIGR02295 HpaD 3,4-dihydroxyph 94.0 0.094 2E-06 36.9 4.0 31 17-49 142-172 (294)
58 cd08360 MhqB_like_C C-terminal 94.0 0.082 1.8E-06 33.3 3.3 25 17-43 9-33 (134)
59 cd08353 Glo_EDI_BRP_like_7 Thi 93.9 0.061 1.3E-06 33.6 2.7 26 16-44 8-33 (142)
60 cd07247 SgaA_N_like N-terminal 93.8 0.063 1.4E-06 32.0 2.5 25 16-42 5-29 (114)
61 cd07244 FosA FosA, a Fosfomyci 93.8 0.15 3.3E-06 31.3 4.2 24 17-42 7-30 (121)
62 cd06587 Glo_EDI_BRP_like This 93.7 0.096 2.1E-06 29.3 3.0 26 17-44 4-29 (112)
63 PRK04101 fosfomycin resistance 93.7 0.097 2.1E-06 33.3 3.3 25 16-42 9-33 (139)
64 cd07255 Glo_EDI_BRP_like_12 Th 93.6 0.1 2.2E-06 31.5 3.2 25 16-42 7-31 (125)
65 cd08364 FosX FosX, a fosfomyci 93.6 0.11 2.4E-06 32.8 3.4 24 17-42 10-33 (131)
66 cd07242 Glo_EDI_BRP_like_6 Thi 93.4 0.19 4.1E-06 30.5 4.2 26 16-43 6-34 (128)
67 cd07249 MMCE Methylmalonyl-CoA 93.3 0.081 1.8E-06 31.6 2.4 28 17-46 6-33 (128)
68 cd07266 HPCD_N_class_II N-term 93.3 0.13 2.9E-06 31.0 3.4 25 16-42 9-33 (121)
69 cd07235 MRD Mitomycin C resist 93.3 0.085 1.8E-06 31.9 2.5 22 17-41 6-27 (122)
70 cd07239 BphC5-RK37_C_like C-te 93.3 0.11 2.3E-06 33.9 3.1 24 17-42 10-33 (144)
71 cd07237 BphC1-RGP6_C_like C-te 92.8 0.19 4E-06 33.0 3.7 26 16-43 14-39 (154)
72 cd08347 PcpA_C_like C-terminal 92.3 0.22 4.7E-06 33.2 3.6 25 17-43 7-31 (157)
73 COG3324 Predicted enzyme relat 92.2 0.11 2.4E-06 35.5 2.1 22 17-40 15-36 (127)
74 cd08363 FosB FosB, a fosfomyci 92.2 0.19 4.1E-06 31.8 3.1 23 17-41 6-28 (131)
75 PLN02300 lactoylglutathione ly 92.0 0.26 5.6E-06 35.4 3.9 31 16-48 159-189 (286)
76 cd08361 PpCmtC_N N-terminal do 91.9 0.21 4.6E-06 31.1 3.0 24 17-42 12-35 (124)
77 cd07250 HPPD_C_like C-terminal 91.2 0.26 5.6E-06 34.1 3.1 31 17-47 9-39 (191)
78 TIGR03211 catechol_2_3 catecho 91.1 0.31 6.8E-06 34.6 3.6 25 16-42 9-33 (303)
79 cd07258 PpCmtC_C C-terminal do 91.1 0.32 6.8E-06 31.9 3.3 25 17-43 5-29 (141)
80 TIGR02295 HpaD 3,4-dihydroxyph 90.0 0.49 1.1E-05 33.3 3.7 26 15-42 8-33 (294)
81 PRK06724 hypothetical protein; 88.9 0.77 1.7E-05 29.6 3.7 22 17-40 13-37 (128)
82 TIGR01263 4HPPD 4-hydroxypheny 88.9 1.1 2.4E-05 33.4 5.1 32 15-48 6-37 (353)
83 TIGR03213 23dbph12diox 2,3-dih 88.0 0.77 1.7E-05 32.6 3.6 27 16-44 147-173 (286)
84 cd08344 MhqB_like_N N-terminal 86.5 1 2.2E-05 27.2 3.1 23 17-42 8-30 (112)
85 TIGR03213 23dbph12diox 2,3-dih 86.5 0.53 1.2E-05 33.4 2.1 24 17-42 9-32 (286)
86 cd07267 THT_Oxygenase_N N-term 86.3 1.6 3.4E-05 26.5 3.8 23 17-42 9-31 (113)
87 TIGR01263 4HPPD 4-hydroxypheny 83.2 1.3 2.8E-05 33.1 2.9 26 17-42 164-189 (353)
88 COG0456 RimI Acetyltransferase 80.7 3.1 6.7E-05 26.4 3.6 28 15-44 129-156 (177)
89 COG2514 Predicted ring-cleavag 69.9 6.4 0.00014 30.2 3.4 25 16-42 173-197 (265)
90 COG2514 Predicted ring-cleavag 61.6 11 0.00024 29.0 3.3 27 16-44 15-41 (265)
91 PF14506 CppA_N: CppA N-termin 61.5 10 0.00022 26.4 2.9 26 13-40 2-27 (125)
92 PLN02875 4-hydroxyphenylpyruva 61.2 9.8 0.00021 30.3 3.1 20 23-42 190-209 (398)
93 PHA01807 hypothetical protein 61.0 6.5 0.00014 26.8 1.8 26 6-34 111-136 (153)
94 PF13176 TPR_7: Tetratricopept 60.3 7.5 0.00016 19.9 1.6 13 23-35 14-26 (36)
95 COG3185 4-hydroxyphenylpyruvat 57.7 10 0.00023 30.4 2.7 18 23-40 179-196 (363)
96 smart00671 SEL1 Sel1-like repe 56.5 11 0.00024 18.2 1.8 13 22-34 19-31 (36)
97 PRK01236 S-adenosylmethionine 49.8 37 0.0008 23.1 4.1 34 9-42 75-108 (131)
98 PRK10314 putative acyltransfer 47.0 15 0.00033 24.2 1.8 23 25-48 118-140 (153)
99 PRK01037 trmD tRNA (guanine-N( 43.1 23 0.00049 28.3 2.5 30 10-42 246-275 (357)
100 PF14507 CppA_C: CppA C-termin 41.2 11 0.00025 25.0 0.5 19 16-37 10-28 (101)
101 TIGR03330 SAM_DCase_Bsu S-aden 39.4 49 0.0011 21.6 3.3 34 9-42 73-106 (112)
102 PF08238 Sel1: Sel1 repeat; I 39.2 14 0.00031 18.2 0.6 13 23-35 23-35 (39)
103 PRK03124 S-adenosylmethionine 36.9 56 0.0012 22.0 3.4 34 9-42 74-107 (127)
104 PF15000 TUSC2: Tumour suppres 36.2 16 0.00035 25.0 0.6 52 9-62 38-104 (111)
105 PF02071 NSF: Aromatic-di-Alan 35.5 16 0.00035 15.9 0.4 8 27-34 1-8 (12)
106 PF08445 FR47: FR47-like prote 34.1 64 0.0014 19.5 3.0 28 12-41 54-81 (86)
107 PRK01706 S-adenosylmethionine 33.4 71 0.0015 21.4 3.4 34 9-42 76-109 (123)
108 PRK00458 S-adenosylmethionine 32.7 73 0.0016 21.5 3.4 34 9-42 86-119 (127)
109 PRK02770 S-adenosylmethionine 32.4 71 0.0015 22.0 3.3 34 9-42 87-120 (139)
110 PRK04025 S-adenosylmethionine 31.5 67 0.0015 22.1 3.1 33 9-41 74-106 (139)
111 PF14703 DUF4463: Domain of un 28.8 35 0.00075 20.1 1.2 12 24-35 70-81 (85)
112 COG4922 Uncharacterized protei 28.8 20 0.00044 25.1 0.2 19 24-42 8-26 (129)
113 PF00515 TPR_1: Tetratricopept 27.3 55 0.0012 15.7 1.6 13 23-35 16-28 (34)
114 PF13281 DUF4071: Domain of un 26.5 40 0.00087 26.8 1.5 15 24-38 242-256 (374)
115 KOG3048 Molecular chaperone Pr 25.7 53 0.0011 23.7 1.8 13 22-34 97-109 (153)
116 PF02675 AdoMet_dc: S-adenosyl 25.2 71 0.0015 20.2 2.2 31 10-41 69-99 (106)
117 KOG2870 NADH:ubiquinone oxidor 24.6 33 0.00071 28.2 0.7 47 10-58 183-229 (452)
118 PF09741 DUF2045: Uncharacteri 23.4 72 0.0016 24.1 2.3 13 37-49 213-225 (237)
119 PF13468 Glyoxalase_3: Glyoxal 23.2 76 0.0016 21.0 2.1 29 17-47 6-34 (175)
120 PF11211 DUF2997: Protein of u 23.0 1.1E+02 0.0023 17.6 2.5 24 22-46 21-44 (48)
121 TIGR03103 trio_acet_GNAT GNAT- 21.8 1.3E+02 0.0028 24.5 3.5 28 16-45 193-220 (547)
122 PF07719 TPR_2: Tetratricopept 20.5 90 0.0019 14.5 1.6 13 23-35 16-28 (34)
123 PRK10975 TDP-fucosamine acetyl 20.5 1.8E+02 0.004 19.2 3.6 31 8-42 158-188 (194)
124 PF13374 TPR_10: Tetratricopep 20.5 66 0.0014 15.5 1.1 15 23-37 17-31 (42)
125 PF09824 ArsR: ArsR transcript 20.2 80 0.0017 22.8 1.9 32 22-53 42-73 (160)
No 1
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.51 E-value=2.1e-14 Score=98.31 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=45.3
Q ss_pred cceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCC----------cchhccccceeeceeccccccc
Q 047456 12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETK----------RKAEQELNSRLPKDCNTTLAQL 69 (71)
Q Consensus 12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd----------Gk~~~~~~~v~hael~~g~~~~ 69 (71)
+++|||.+++ ++++||+||+++|||+++.|++.+| |+ |+||+|++|...+
T Consensus 1 ~l~PYl~f~g-n~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~-------i~HA~l~i~g~~i 60 (136)
T COG2764 1 TLSPYLFFNG-NAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGR-------IMHAELRIGGSTI 60 (136)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhCceEEEEEEcCccCccccccccCc-------eEEEEEEECCEEE
Confidence 4789999985 8999999999999999999999888 65 9999999997654
No 2
>PRK10148 hypothetical protein; Provisional
Probab=99.37 E-value=9.8e-13 Score=88.61 Aligned_cols=57 Identities=11% Similarity=0.195 Sum_probs=42.3
Q ss_pred cceeEEEEecCChhHHHHHHHHhhCcEEEEeec---CCCcchh------c----cccceeeceeccccccc
Q 047456 12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNM---ETKRKAE------Q----ELNSRLPKDCNTTLAQL 69 (71)
Q Consensus 12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~---~PdGk~~------~----~~~~v~hael~~g~~~~ 69 (71)
.|+|||.+++ ++++||+||+++|||+++.|+. .|++.-+ . +--.|+||+|++|...+
T Consensus 2 ~l~pyL~f~g-~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~l 71 (147)
T PRK10148 2 PLSPYLSFAG-NCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDI 71 (147)
T ss_pred eeEEEEEeCC-CHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEE
Confidence 4899999975 8999999999999999998874 2211100 0 01269999999987654
No 3
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.22 E-value=2.5e-11 Score=77.25 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=42.6
Q ss_pred ceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcch---hccccceeeceeccccccc
Q 047456 13 MKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKA---EQELNSRLPKDCNTTLAQL 69 (71)
Q Consensus 13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~---~~~~~~v~hael~~g~~~~ 69 (71)
++|||.+.+ ++++||+||+++||++...++..++... +..-..|+|++|++|...+
T Consensus 1 l~p~L~~~~-~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l 59 (128)
T cd06588 1 ITPYLWFNG-NAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRL 59 (128)
T ss_pred CeeEEeeCC-CHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEE
Confidence 589999953 8999999999999999998875322211 1222369999999998765
No 4
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=99.02 E-value=5.9e-10 Score=72.87 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=42.7
Q ss_pred cceeEEEEecCChhHHHHHHHHhhCcEEEEeec-CCCcchhccccceeeceeccccccc
Q 047456 12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNM-ETKRKAEQELNSRLPKDCNTTLAQL 69 (71)
Q Consensus 12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~-~PdGk~~~~~~~v~hael~~g~~~~ 69 (71)
.|+|||..++ +|++|++||+++||..++.++. .|++..+ .-..|+||+|+++...+
T Consensus 2 ki~pyL~F~g-~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~-~~~~v~ha~l~i~g~~l 58 (116)
T PF06983_consen 2 KITPYLWFNG-NAEEALEFYKEVFGGSEIMTFGDYPDDEPE-WKDKVMHAELTIGGQKL 58 (116)
T ss_dssp SEEEEEEESS--HHHHHHHHHHHSTTEEEEEEEE-TTTCTT-HTTSEEEEEEEETTEEE
T ss_pred ceEEEEEeCC-CHHHHHHHHHHHcCCCEEEEEeECCCCCCC-CCCcEEEEEEEECCeEE
Confidence 5899999986 9999999999999988877643 3443322 44479999999987654
No 5
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.83 E-value=8.1e-09 Score=63.39 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=37.8
Q ss_pred ceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceeccccc
Q 047456 13 MKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTLA 67 (71)
Q Consensus 13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~~ 67 (71)
++|+|.|+ |..+|++||+++||.+...+.++++|+ +.|+++++|..
T Consensus 1 ~~p~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~-------~~~~~l~~~~~ 46 (122)
T cd08355 1 VWPTLRYR--DAAAAIDWLTDAFGFEERLVVPDDDGG-------VAHAELRFGDG 46 (122)
T ss_pred CeEEEEEC--CHHHHHHHHHHhcCCEEEEEEeCCCCc-------EEEEEEEECCE
Confidence 58999997 799999999999999999887666665 55777776643
No 6
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=98.66 E-value=6.4e-08 Score=58.25 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=37.6
Q ss_pred ccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhccccceeeceecccc
Q 047456 11 MGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRLPKDCNTTL 66 (71)
Q Consensus 11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~hael~~g~ 66 (71)
|+|.|+|.|+ |..++++||+++||.+.+.+...++|+ +.++.+.+|.
T Consensus 1 ~~~~~~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~~~-------~~~~~l~~~~ 47 (122)
T cd07246 1 HTVTPYLIVR--DAAAAIDFYKKAFGAEELERMPDDDGR-------VMHAELRIGD 47 (122)
T ss_pred CceeEEEEEC--CHHHHHHHHHHhhCCEEEEEEeCCCCC-------EEEEEEEECC
Confidence 6899999997 799999999999999999887666664 4455555443
No 7
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=97.64 E-value=8.2e-05 Score=45.03 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=26.7
Q ss_pred ccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 11 MGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
+++.|.|.|+ |.+++++||+++||.+...+
T Consensus 1 ~~~~~~l~v~--D~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 1 TSLYPVIVTD--DLAETADFYVRHFGFTVVFD 30 (119)
T ss_pred CcceeEEEEC--CHHHHHHHHHHhhCcEEEec
Confidence 4789999997 79999999999999987754
No 8
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=97.20 E-value=0.00048 Score=42.37 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=26.4
Q ss_pred cceeEEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 12 GMKPQLLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
+++|.|.|+ |..++++||++ ||.+...+.+
T Consensus 3 ~~~~~l~v~--Dl~~s~~FY~~-lG~~~~~~~~ 32 (120)
T cd08350 3 TTIPNLPSR--DLDATEAFYAR-LGFSVGYRQA 32 (120)
T ss_pred cccceeEcC--CHHHHHHHHHH-cCCEEEecCC
Confidence 688999997 79999999999 9999887644
No 9
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=97.10 E-value=0.00076 Score=39.81 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.5
Q ss_pred eeEEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 14 KPQLLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 14 tP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
.|.|.|+ |.+++++||+++||.+...+.
T Consensus 1 ~~~i~v~--d~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 1 VPVLPVS--DIERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred CCEEEEC--CHHHHHHHHHhccCeEEEEEc
Confidence 3889997 799999999999999987664
No 10
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=97.08 E-value=0.0017 Score=41.98 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=31.7
Q ss_pred eecccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456 6 TSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRK 49 (71)
Q Consensus 6 ~~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk 49 (71)
++-.+.--...|.|. |.++|++||+++||.+++.+...|+++
T Consensus 12 ~~~~~~i~hv~l~v~--Dl~~a~~FY~~vLG~~~~~~~~~~~~~ 53 (150)
T TIGR00068 12 KTKKRRLLHTMLRVG--DLDKSLDFYTEVLGMKLLRKRDFPEMK 53 (150)
T ss_pred ccCCceEEEEEEEec--CHHHHHHHHHHhcCCEEEEEeccCCCc
Confidence 334444455678886 799999999999999998876666543
No 11
>PRK10291 glyoxalase I; Provisional
Probab=96.96 E-value=0.0014 Score=40.80 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=25.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
|.|+ |.+++++||+++||.+.+.+...|++
T Consensus 2 l~V~--Dle~s~~FY~~~LG~~~~~~~~~~~~ 31 (129)
T PRK10291 2 LRVG--DLQRSIDFYTNVLGMKLLRTSENPEY 31 (129)
T ss_pred EEec--CHHHHHHHHHhccCCEEEEeecCCCC
Confidence 6786 79999999999999998887666654
No 12
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=96.86 E-value=0.0033 Score=37.21 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
|.|+ |.+++++||+++||.+.+....
T Consensus 7 i~v~--d~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 7 IRVK--DLEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEES--CHHHHHHHHHHTTTSEEEEEEE
T ss_pred EEcC--CHHHHHHHHHHHhCCcEEeeec
Confidence 6775 7999999999999999998766
No 13
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.73 E-value=0.0029 Score=37.96 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=24.3
Q ss_pred ceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 13 MKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
+...|.|. |.+++++||+++||.++..|
T Consensus 2 ~~~~l~v~--d~~~s~~Fy~~~lG~~~~~~ 29 (122)
T cd08354 2 LETALYVD--DLEAAEAFYEDVLGLELMLK 29 (122)
T ss_pred eEEEEEeC--CHHHHHHHHHhccCCEEeec
Confidence 34678896 79999999999999998876
No 14
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=96.69 E-value=0.0033 Score=44.18 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=30.4
Q ss_pred cccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456 8 TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRK 49 (71)
Q Consensus 8 ~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk 49 (71)
-||.---=.|.|+ |-+++|+||+++||.+++.|...|+++
T Consensus 24 ~~~~~~Ht~i~V~--Dle~Si~FY~~vLG~~~~~r~~~~~~~ 63 (185)
T PLN03042 24 KGYIMQQTMFRIK--DPKASLDFYSRVLGMSLLKRLDFPEMK 63 (185)
T ss_pred CCcEEEEEEEeeC--CHHHHHHHHHhhcCCEEEEEEEcCCCc
Confidence 3443333358886 799999999999999999997766653
No 15
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.67 E-value=0.0037 Score=41.58 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=27.9
Q ss_pred eEEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456 15 PQLLVEASKATGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
..|.|+ |-+++|+||+++||-+++.|...|+|
T Consensus 6 v~irV~--DlerSi~FY~~vLG~~~~~~~~~~~~ 37 (127)
T cd08358 6 FVFKVG--NRNKTIKFYREVLGMKVLRHEEFEEG 37 (127)
T ss_pred EEEEeC--CHHHHHHHHHHhcCCEEEeeecCccc
Confidence 457886 79999999999999999998887874
No 16
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=96.64 E-value=0.0027 Score=38.21 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=24.0
Q ss_pred ceeEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456 13 MKPQLLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
+.|.|.|+ |.+++++||+++||.+...
T Consensus 2 ~~~~l~v~--Dl~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 2 IVPNLPVA--DPEAAAAFYADVLGLDVVM 28 (112)
T ss_pred ccceEecC--CHHHHHHHHHHhcCceEEE
Confidence 57899997 7999999999999998764
No 17
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=96.60 E-value=0.0033 Score=37.53 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=24.8
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK 47 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd 47 (71)
.|.|+ |.+++++||++.||.++..+..+++
T Consensus 6 ~l~v~--d~~~a~~FY~~~lG~~~~~~~~~~~ 35 (126)
T cd08346 6 TLITR--DAQETVDFYTDVLGLRLVKKTVNQD 35 (126)
T ss_pred EEEcC--ChhHhHHHHHHccCCEEeeeEeccC
Confidence 47775 7999999999999999987765443
No 18
>PLN02367 lactoylglutathione lyase
Probab=96.59 E-value=0.0041 Score=46.13 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=35.4
Q ss_pred ceecccccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcch
Q 047456 5 ATSTNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKA 50 (71)
Q Consensus 5 ~~~~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~ 50 (71)
+.+-||.----.|.|+ |.+++|+||+++||.+++.|...|+++.
T Consensus 69 ~~t~~~~~~HtmlRVk--Dle~Sl~FYt~vLGm~ll~r~d~pe~~f 112 (233)
T PLN02367 69 EATKGYIMQQTMYRIK--DPKASLDFYSRVLGMSLLKRLDFPEMKF 112 (233)
T ss_pred CCCCCcEEEEEEEEeC--CHHHHHHHHHHhcCCEEeEEEecCCCcE
Confidence 3455666555578997 7999999999999999999988787653
No 19
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.52 E-value=0.0044 Score=37.90 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.8
Q ss_pred ceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 13 MKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
..|.|.|+ |-.++++||+++||.+...+
T Consensus 4 ~~~~l~v~--D~~~a~~FY~~~lG~~~~~~ 31 (120)
T cd09011 4 KNPLLVVK--DIEKSKKFYEKVLGLKVVMD 31 (120)
T ss_pred EEEEEEEC--CHHHHHHHHHHhcCCEEeec
Confidence 45789997 79999999999999987643
No 20
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=96.39 E-value=0.0068 Score=36.27 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=23.7
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETK 47 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd 47 (71)
|.|+ |.++|++||++.||.+...+...++
T Consensus 6 i~v~--d~~~a~~fY~~~lG~~~~~~~~~~~ 34 (121)
T cd07233 6 LRVK--DLEKSLDFYTDVLGMKLLRRKDFPE 34 (121)
T ss_pred EEec--CcHHHHHHHHhccCCeEEEEEecCC
Confidence 5664 7999999999999999887655554
No 21
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=96.37 E-value=0.0064 Score=36.06 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.9
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
|.|. |..+|++||++.||.+...+..
T Consensus 9 l~v~--d~~~a~~fy~~~lG~~~~~~~~ 34 (125)
T cd08352 9 IICS--DYEKSKEFYVEILGFKVIREVY 34 (125)
T ss_pred EEcC--CHHHHHHHHHHhcCCEEeeeee
Confidence 6775 7999999999999998876543
No 22
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=96.35 E-value=0.006 Score=38.75 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=24.3
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
-|.|+ |..++++||+++||.+...|...+
T Consensus 5 ~i~V~--D~e~s~~FY~~vLGf~~~~~~~~~ 33 (136)
T cd08342 5 EFYVG--NAKQLASWFSTKLGFEPVAYHGSE 33 (136)
T ss_pred EEEeC--CHHHHHHHHHHhcCCeEEEecCCC
Confidence 37785 799999999999999998876543
No 23
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.30 E-value=0.0042 Score=38.46 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.1
Q ss_pred cceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 12 GMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
++.|.|.|+ |-.++++||++ +|.+...+
T Consensus 2 ~~~~~l~v~--Dl~~s~~FY~~-LGf~~~~~ 29 (113)
T cd08356 2 SIRPFIPAK--DFAESKQFYQA-LGFELEWE 29 (113)
T ss_pred cceeccccc--cHHHHHHHHHH-hCCeeEec
Confidence 688999997 79999999987 99998876
No 24
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=96.25 E-value=0.0078 Score=37.66 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.7
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
.|.|+ |..++++||+++||.+...+...|
T Consensus 4 ~l~V~--dl~~a~~Fy~~~lG~~~~~~~~~~ 32 (131)
T cd08343 4 VLRTP--DVAATAAFYTEVLGFRVSDRVGDP 32 (131)
T ss_pred EEEcC--CHHHHHHHHHhcCCCEEEEEEccC
Confidence 36775 799999999999999988765544
No 25
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=96.20 E-value=0.0095 Score=35.57 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.0
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNME 45 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~ 45 (71)
.|.|+ |-.++++||+++||.+...|...
T Consensus 6 ~l~v~--dl~~s~~FY~~~lg~~~~~~~~~ 33 (125)
T cd07241 6 AIWTK--DLERMKAFYVTYFGATSNEKYHN 33 (125)
T ss_pred EEEec--CHHHHHHHHHHHhCCEeeceEeC
Confidence 47786 79999999999999987666443
No 26
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=96.19 E-value=0.011 Score=38.43 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=25.5
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
|.|+ |-.++++||+++||-++..|+..|+|
T Consensus 12 l~v~--Dle~s~~FY~~vLGf~~~~~~~~~~~ 41 (143)
T cd07243 12 LTGE--DIAETTRFFTDVLDFYLAERVVDPDG 41 (143)
T ss_pred EecC--CHHHHHHHHHHhcCCEEEEEEecCCC
Confidence 7775 79999999999999999888766655
No 27
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=96.19 E-value=0.011 Score=34.86 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |..++++||++.||.+.+.+
T Consensus 1 l~v~--d~~~a~~FY~~~lg~~~~~~ 24 (108)
T PF12681_consen 1 LPVS--DLEAAAAFYEDVLGFEVVFD 24 (108)
T ss_dssp EEES--SHHHHHHHHHHTTTSEEEEE
T ss_pred CccC--CHHHHHHHHHHhcCCEEEEe
Confidence 5675 79999999999999999973
No 28
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=96.09 E-value=0.0078 Score=36.32 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.5
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
|.|+ |..++++||+++||.+...+.
T Consensus 7 l~v~--D~~~s~~FY~~~lG~~~~~~~ 31 (128)
T TIGR03081 7 IAVP--DLEEAAKLYEDVLGAHVSHIE 31 (128)
T ss_pred EEeC--CHHHHHHHHHHHhCCCCccce
Confidence 7775 799999999999999887654
No 29
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=96.08 E-value=0.012 Score=34.39 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.4
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
|.|. |.+++++||+++||.+...+..
T Consensus 4 l~v~--d~~~~~~fY~~~lG~~~~~~~~ 29 (119)
T cd07263 4 LYVD--DQDKALAFYTEKLGFEVREDVP 29 (119)
T ss_pred EEeC--CHHHHHHHHHhccCeEEEEeec
Confidence 5665 7999999999999999887755
No 30
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=95.96 E-value=0.017 Score=34.83 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |.+++++||+++||.+....
T Consensus 5 ~l~v~--D~~~s~~FY~~~lG~~~~~~ 29 (125)
T cd07264 5 IIYVE--DVEKTLEFYERAFGFERRFL 29 (125)
T ss_pred EEEEc--CHHHHHHHHHHhhCCeEEee
Confidence 47786 79999999999999987643
No 31
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.85 E-value=0.016 Score=34.27 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.3
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
.|.|+ |.+++++||+++||.+...+..
T Consensus 8 ~l~v~--d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 8 VLTVA--DIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred EEEec--CHHHHHHHHHHHhCceeecccc
Confidence 36675 7999999999999999886643
No 32
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=95.79 E-value=0.014 Score=35.90 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=23.1
Q ss_pred eeEEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456 14 KPQLLVEASKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 14 tP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
...|.|+ |-+++++||++ ||.+...+..++
T Consensus 3 ~v~l~V~--Dl~~s~~FY~~-lGf~~~~~~~~~ 32 (124)
T cd09012 3 FINLPVK--DLEKSTAFYTA-LGFEFNPQFSDE 32 (124)
T ss_pred EEEeecC--CHHHHHHHHHH-CCCEEccccCCC
Confidence 4568896 79999999976 999877554443
No 33
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=95.68 E-value=0.017 Score=33.04 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
-|.|+ |-+++++||+..+|.+.+.+....
T Consensus 7 ~l~v~--dl~~s~~FY~~~LG~~~~~~~~~~ 35 (138)
T COG0346 7 TLAVP--DLEASIDFYTDVLGLRLVKDTVNE 35 (138)
T ss_pred EEeeC--CHhHhHHHHHhhcCCeeeeecccc
Confidence 47786 699999999999999999886543
No 34
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=95.64 E-value=0.014 Score=38.80 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.5
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |-++|++||+++||.+.+.+
T Consensus 9 ~i~V~--Dle~s~~FY~~~LG~~~~~~ 33 (162)
T TIGR03645 9 GISVP--DLDAAVKFYTEVLGWYLIMP 33 (162)
T ss_pred EEEeC--CHHHHHHHHHHhcCCEEEec
Confidence 47886 79999999999999988754
No 35
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=95.58 E-value=0.019 Score=34.16 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.5
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
|.|+ |..++++||+++||.+.+.|.
T Consensus 4 l~v~--d~~~s~~Fy~~~lg~~~~~~~ 28 (113)
T cd08345 4 LIVK--DLNKSIAFYRDILGAELIYSS 28 (113)
T ss_pred EEEC--CHHHHHHHHHHhcCCeeeecc
Confidence 6675 799999999999999987663
No 36
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.55 E-value=0.015 Score=35.78 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=25.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCCcch
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRKA 50 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~ 50 (71)
++|+ |..+|++||++.||.+...+...+..++
T Consensus 5 i~V~--Dl~~a~~~~~~~lG~~~~~~~~~~~~~v 36 (109)
T PF13669_consen 5 IVVP--DLDAAAAFYCDVLGFEPWERYRDEPQGV 36 (109)
T ss_dssp EEES---HHHHHHHHHHCTTHEEEEEEEEGCTTE
T ss_pred EEcC--CHHHHHHHHHHhhCCcEEEEEecCCCCE
Confidence 5775 7999999999999999887776665543
No 37
>PRK11478 putative lyase; Provisional
Probab=95.38 E-value=0.02 Score=34.90 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=20.2
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |..++++||+++||.+...+
T Consensus 12 l~v~--D~~~a~~FY~~~LG~~~~~~ 35 (129)
T PRK11478 12 IIAT--DYAVSKAFYCDILGFTLQSE 35 (129)
T ss_pred EEcC--CHHHHHHHHHHHhCCEeccc
Confidence 6675 79999999999999987644
No 38
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.34 E-value=0.03 Score=33.95 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.6
Q ss_pred ceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 13 MKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
+.+.|.|+ |.+++++||+++||.+...+
T Consensus 3 ~hv~l~v~--d~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 3 FHVALNVD--DLEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred EEEEEEeC--CHHHHHHHHHHHhCCeEecc
Confidence 45678886 79999999999999987655
No 39
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=95.26 E-value=0.029 Score=36.74 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.1
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
|.|+ |-.++++||+++||.+...+...+
T Consensus 7 l~V~--Dle~a~~FY~~~LG~~~~~~~~~~ 34 (153)
T cd07257 7 LEVP--DFAASFDWYTETFGLKPSDVIYLP 34 (153)
T ss_pred EecC--CHHHHHHHHHHhcCCeEEeeEecC
Confidence 6675 799999999999999887665544
No 40
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=95.25 E-value=0.03 Score=36.96 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=23.8
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
|.|+ |-+++++||+++||.+...+...++|
T Consensus 9 l~V~--Dl~~s~~FY~~vLGl~~~~~~~~~~~ 38 (161)
T cd07256 9 LRVP--DVDAGLAYYRDELGFRVSEYTEDDDG 38 (161)
T ss_pred EecC--CHHHHHHHHHhccCCEEEEEeccCCC
Confidence 6775 79999999999999988766544444
No 41
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.17 E-value=0.052 Score=38.75 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=39.4
Q ss_pred ccceeEEEEecCChhHHHHHHHHhhCcEEEE---eec--CCCcchhccccceeeceeccccc
Q 047456 11 MGMKPQLLVEASKATGSVQFYEIAFGAVEIS---RNM--ETKRKAEQELNSRLPKDCNTTLA 67 (71)
Q Consensus 11 ~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~---Rl~--~PdGk~~~~~~~v~hael~~g~~ 67 (71)
.-++|+|..+. +|.+|.+||...|--.++. |.+ .|+| .-=.|++++.++++.
T Consensus 4 ~kit~~L~F~~-~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g----~~G~Vl~a~F~l~g~ 60 (151)
T COG3865 4 PKITPFLWFDG-NAEEAMNFYLSTFPDSKIIGITRYPEGEPGG----KEGKVLVAEFTLNGQ 60 (151)
T ss_pred CcceeEEEECC-cHHHHHHHHHHhCCcceeeeeeecCCCCCCC----CCccEEEEEEEECCe
Confidence 46899999985 9999999999999877765 433 2333 122599999988764
No 42
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=95.16 E-value=0.038 Score=33.15 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=19.5
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEE
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
|.|+ |-.++++||+++||.+...
T Consensus 5 l~v~--Dl~~s~~FY~~~lG~~~~~ 27 (125)
T cd08357 5 IPVR--DLEAARAFYGDVLGCKEGR 27 (125)
T ss_pred EEeC--CHHHHHHHHHHhcCCEEee
Confidence 5564 7999999999999998754
No 43
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=95.14 E-value=0.031 Score=33.90 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.9
Q ss_pred EEEEecCChhHHHHHHHHhh---CcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAF---GAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AF---GA~Ev~R 42 (71)
.|.|+ |.+++++||+++| |.+++.+
T Consensus 5 ~l~v~--d~~~s~~FY~~~f~~lg~~~~~~ 32 (123)
T cd07262 5 TLGVN--DLERARAFYDAVLAPLGIKRVME 32 (123)
T ss_pred EEecC--cHHHHHHHHHHHHhhcCceEEee
Confidence 36675 7999999999996 7777655
No 44
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=95.04 E-value=0.039 Score=36.82 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=25.4
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
-|.|+ |-+++++||++.||.+.+.+...++|
T Consensus 11 ~l~V~--Dle~a~~FY~~vLG~~~~~~~~~~~~ 41 (166)
T cd09014 11 NLLAS--DVDANRDFMEEVLGFRLREQIRLDNG 41 (166)
T ss_pred EEEcC--CHHHHHHHHHHccCCEEEEEEecCCC
Confidence 37886 79999999999999998877655443
No 45
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=94.97 E-value=0.027 Score=33.54 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.8
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |.+++.+||+++||-++..|
T Consensus 3 ~l~v~--d~~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 3 TLGVA--DLARSRAFYEALLGWKPSAD 27 (121)
T ss_pred eEeeC--CHHHHHHHHHHhcCceeccc
Confidence 47786 79999999999999998766
No 46
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=94.95 E-value=0.038 Score=34.09 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.5
Q ss_pred eEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456 15 PQLLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
..|.|+ |-+++++||+++||.++..
T Consensus 8 v~l~v~--Dl~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 8 TIVPAR--DREASAEFYAEILGLPWAK 32 (123)
T ss_pred EEEEcC--CHHHHHHHHHHhcCCEeee
Confidence 457786 7999999999999998865
No 47
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=94.93 E-value=0.036 Score=33.85 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.9
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |..++++||+++||.+.+.|
T Consensus 11 ~l~v~--dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 11 ELLTP--KPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EEEeC--CHHHHHHHHHhCcCCEEEee
Confidence 47775 79999999999999998876
No 48
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=94.92 E-value=0.042 Score=39.07 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=26.2
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRK 49 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk 49 (71)
|.|+ |-+++++||+++||.+...++..++|+
T Consensus 151 l~V~--Dl~~s~~FY~~~LG~~~~~~~~~~~~~ 181 (303)
T TIGR03211 151 LYGE--DVAENTRFFTEVLGFRLTEQVVLGDGK 181 (303)
T ss_pred EEeC--CHHHHHHHHHHhcCCEEEeeEEcCCCc
Confidence 7775 799999999999999988887666654
No 49
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=94.82 E-value=0.03 Score=34.51 Aligned_cols=25 Identities=12% Similarity=-0.012 Sum_probs=21.6
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |-.++++||+++||.+...|
T Consensus 7 ~l~v~--Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 7 GVESS--DLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred EEEeC--CHHHHHHHHHhccCceeccC
Confidence 47886 79999999999999988755
No 50
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=94.69 E-value=0.056 Score=32.93 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.2
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
.|.|+ |-.++++||+++||.+...+.
T Consensus 9 ~l~v~--Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 9 QLRVL--DLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred EEEeC--CHHHHHHHHHhccCCEeeeec
Confidence 47886 799999999999999877663
No 51
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=94.68 E-value=0.044 Score=31.43 Aligned_cols=28 Identities=29% Similarity=0.199 Sum_probs=22.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
|.|. |-.++++||++.||.+.+.+...+
T Consensus 6 l~v~--d~~~~~~FY~~~lG~~~~~~~~~~ 33 (114)
T cd07245 6 LRVP--DLEASRAFYTDVLGLEEGPRPPFL 33 (114)
T ss_pred EecC--CHHHHHHHHHHccCCcccCcCCCC
Confidence 5564 799999999999999877664433
No 52
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=94.56 E-value=0.055 Score=32.45 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |..++++||+++||.+.+.+
T Consensus 8 ~l~v~--d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 8 GLGVP--DLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred EEecC--CHHHHHHHHHhCcCcEEEEe
Confidence 46775 79999999999999987754
No 53
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=94.49 E-value=0.075 Score=31.51 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |..++++||+++||.+...+
T Consensus 7 ~l~v~--d~~~~~~FY~~~lg~~~~~~ 31 (117)
T cd07240 7 ELEVP--DLERALEFYTDVLGLTVLDR 31 (117)
T ss_pred EEecC--CHHHHHHHHHhccCcEEEee
Confidence 35665 79999999999999988765
No 54
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=94.45 E-value=0.083 Score=32.58 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
.|.|+ |.+++++||+++||.+...+.
T Consensus 6 ~l~v~--D~~~s~~FY~~~lG~~~~~~~ 31 (134)
T cd08348 6 VLYVR--DLEAMVRFYRDVLGFTVTDRG 31 (134)
T ss_pred EEEec--CHHHHHHHHHHhcCCEEEeec
Confidence 36665 799999999999999877653
No 55
>PLN02300 lactoylglutathione lyase
Probab=94.39 E-value=0.071 Score=38.32 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=24.3
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNMETK 47 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd 47 (71)
.|.|+ |..++++||+++||.+.+.|...++
T Consensus 29 ~l~V~--Dle~s~~FY~~vLG~~~~~~~~~~~ 58 (286)
T PLN02300 29 VYRVG--DLDRTIKFYTECLGMKLLRKRDIPE 58 (286)
T ss_pred EEEeC--CHHHHHHHHHHhcCCEEEEeeecCC
Confidence 47786 7999999999999999887654443
No 56
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=94.24 E-value=0.037 Score=33.13 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |-++|++||++.||.+...+
T Consensus 4 l~v~--d~~~a~~FY~~~lg~~~~~~ 27 (114)
T cd07261 4 LYVE--DPAASAEFYSELLGREPVEL 27 (114)
T ss_pred EEEC--CHHHHHHHHHHHcCCCccCC
Confidence 6775 79999999999999886643
No 57
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=94.03 E-value=0.094 Score=36.94 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=25.4
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCCcc
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETKRK 49 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk 49 (71)
|.|+ |-+++++||+++||.+...|..+++|+
T Consensus 142 l~v~--dl~~a~~Fy~~~lG~~~~~~~~~~~~~ 172 (294)
T TIGR02295 142 VFVP--DVQRALRFYKEELGFRVTEYTEDDEGN 172 (294)
T ss_pred EEeC--CHHHHHHHHHHhcCCEEEEEeccCCCc
Confidence 6775 799999999999999988776655553
No 58
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=93.96 E-value=0.082 Score=33.33 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
|.|+ |.+++++||+++||.+.+.+.
T Consensus 9 l~v~--dl~~s~~FY~~vlGl~~~~~~ 33 (134)
T cd08360 9 LFVP--DVEAAEAFYRDRLGFRVSDRF 33 (134)
T ss_pred EEcC--CHHHHHHHHHHhcCCEEEEEe
Confidence 6775 799999999999999876653
No 59
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=93.95 E-value=0.061 Score=33.58 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
.|.|+ |.+++++||++ ||.+...+..
T Consensus 8 ~i~v~--Dl~~s~~FY~~-LG~~~~~~~~ 33 (142)
T cd08353 8 GIVVR--DLEAAIAFFLE-LGLELEGRAE 33 (142)
T ss_pred EEEeC--CHHHHHHHHHH-cCCEEccccc
Confidence 37786 79999999998 9998765543
No 60
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=93.84 E-value=0.063 Score=32.04 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.7
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |..++++||++.||.+...+
T Consensus 5 ~l~v~--d~~~s~~FY~~~lG~~~~~~ 29 (114)
T cd07247 5 ELPTT--DPERAKAFYGAVFGWTFEDM 29 (114)
T ss_pred EeeCC--CHHHHHHHHHhccCceeeec
Confidence 46775 79999999999999977643
No 61
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.77 E-value=0.15 Score=31.29 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |.+++++||+++||.+...+
T Consensus 7 l~v~--d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 7 LAVS--DLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred EEEC--CHHHHHHHHHHhcCCEEEEe
Confidence 5664 79999999999999987654
No 62
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=93.70 E-value=0.096 Score=29.31 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.4
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
+.++ |.+++++||++.||.+......
T Consensus 4 i~~~--d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 4 LTVS--DLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred eeeC--CHHHHHHHHHhccCCEEEEeec
Confidence 4554 7999999999999998877654
No 63
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=93.67 E-value=0.097 Score=33.27 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.6
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |-.++++||++.||.+.+.|
T Consensus 9 ~L~v~--Dl~~s~~FY~~~lG~~~~~~ 33 (139)
T PRK04101 9 CFSVS--NLEKSIEFYEKVLGAKLLVK 33 (139)
T ss_pred EEEec--CHHHHHHHHHhccCCEEEee
Confidence 47775 79999999999999988755
No 64
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=93.61 E-value=0.1 Score=31.45 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.3
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|. |.+++++||++.||.+...+
T Consensus 7 ~l~v~--d~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 7 TLRVA--DLERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEC--CHHHHHHHHHhccCcEEEEc
Confidence 36775 79999999999999988765
No 65
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.57 E-value=0.11 Score=32.77 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.2
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |-+++++||+++||..++.|
T Consensus 10 l~V~--dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 10 LIVK--DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred EEeC--CHHHHHHHHHHHhCCeeEEe
Confidence 6775 79999999999999988766
No 66
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.42 E-value=0.19 Score=30.52 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEecCChhHHHHHHHHhh---CcEEEEee
Q 047456 16 QLLVEASKATGSVQFYEIAF---GAVEISRN 43 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AF---GA~Ev~Rl 43 (71)
.+.|. |..++++||++.| |-+++.+.
T Consensus 6 ~i~v~--d~~~~~~Fy~~~l~~~G~~~~~~~ 34 (128)
T cd07242 6 ELTVR--DLERSRAFYDWLLGLLGFEEVKEW 34 (128)
T ss_pred EEEeC--CHHHHHHHHHHHHhhcCCEEEEee
Confidence 35664 7999999999999 99988764
No 67
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=93.35 E-value=0.081 Score=31.60 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=23.5
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCC
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
|.|+ |..++.+||++.||.+...+.+.+
T Consensus 6 l~v~--d~~~~~~fy~~~lG~~~~~~~~~~ 33 (128)
T cd07249 6 IAVP--DLEAAIKFYRDVLGVGPWEEEEVP 33 (128)
T ss_pred EEeC--CHHHHHHHHHHhhCCCCccccccC
Confidence 6775 799999999999999998765543
No 68
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=93.34 E-value=0.13 Score=30.99 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |-+++++||+++||.+...+
T Consensus 9 ~l~v~--d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 9 ELRVT--DLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred EEEcC--CHHHHHHHHHhccCCEEecc
Confidence 36775 79999999999999987644
No 69
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=93.33 E-value=0.085 Score=31.92 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.2
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEE
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
|.|+ |-.+|++||++ ||.+...
T Consensus 6 l~V~--D~~~a~~FY~~-LGf~~~~ 27 (122)
T cd07235 6 IVVA--DMAKSLDFYRR-LGFDFPE 27 (122)
T ss_pred EEec--cHHHHHHHHHH-hCceecC
Confidence 7786 79999999975 9997653
No 70
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=93.26 E-value=0.11 Score=33.94 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.7
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |-+++++||+++||.++..+
T Consensus 10 i~V~--Dle~s~~FY~~~LG~~~~~~ 33 (144)
T cd07239 10 LNSP--DVDKTVAFYEDVLGFRVSDW 33 (144)
T ss_pred EECC--CHHHHHHHHHhcCCCEEEEe
Confidence 6675 79999999999999988755
No 71
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=92.77 E-value=0.19 Score=32.96 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=21.9
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
.|.|+ |-.++++||+++||.+...+.
T Consensus 14 ~l~v~--Dl~~a~~FY~~~LGl~~~~~~ 39 (154)
T cd07237 14 VLATP--DPDEAHAFYRDVLGFRLSDEI 39 (154)
T ss_pred EEEeC--CHHHHHHHHHHccCCEEEEEE
Confidence 37786 799999999999999877653
No 72
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.28 E-value=0.22 Score=33.17 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.7
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
|.|+ |..++.+||++.||.+...+.
T Consensus 7 i~V~--Dle~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 7 LTVR--DPEATAAFLTDVLGFREVGEE 31 (157)
T ss_pred EEeC--CHHHHHHHHHHhcCCEEEeee
Confidence 6775 799999999999999887764
No 73
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=92.24 E-value=0.11 Score=35.54 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=18.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEE
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEI 40 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev 40 (71)
|.++ |-++|++||.++||=+--
T Consensus 15 i~~~--D~~ra~~FY~~vFgW~~~ 36 (127)
T COG3324 15 LPVS--DLERAKAFYEKVFGWTFE 36 (127)
T ss_pred eecC--CHHHHHHHHHHhhCceec
Confidence 4565 799999999999998654
No 74
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=92.19 E-value=0.19 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.5
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEE
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
|.|+ |-+++++||+++||.+...
T Consensus 6 l~V~--Dl~~a~~FY~~~LG~~~~~ 28 (131)
T cd08363 6 FSVS--NLDKSISFYKHVFMEKLLV 28 (131)
T ss_pred EEEC--CHHHHHHHHHHhhCCEEec
Confidence 5665 7999999999999997654
No 75
>PLN02300 lactoylglutathione lyase
Probab=92.00 E-value=0.26 Score=35.45 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=24.9
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
.|.+. |..++++||+++||-+...+...|++
T Consensus 159 ~l~~~--d~~~a~~Fy~~~lg~~~~~~~~~~~~ 189 (286)
T PLN02300 159 MLRVG--DLDRSIKFYEKAFGMKLLRKRDNPEY 189 (286)
T ss_pred EEEeC--CHHHHHHHHHhccCCEEEeeeccccc
Confidence 46775 79999999999999998766655553
No 76
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=91.93 E-value=0.21 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.0
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |-.++++||++++|.+...|
T Consensus 12 l~v~--d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 12 LGTR--DLAGATRFATDILGLQVAER 35 (124)
T ss_pred EeeC--CHHHHHHHHHhccCceeccC
Confidence 6775 79999999999999988766
No 77
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=91.25 E-value=0.26 Score=34.05 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=23.3
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETK 47 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd 47 (71)
+.|...|-.++++||+++||.+...+...++
T Consensus 9 i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~ 39 (191)
T cd07250 9 GNVPDGEMDSWVDFYRKVLGFHRFWSFDIED 39 (191)
T ss_pred eecChhHHHHHHHHHHHhhCCceeeEEccCc
Confidence 4553126999999999999999887765443
No 78
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=91.14 E-value=0.31 Score=34.63 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.7
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|.|+ |-.++++||+++||.+.+.|
T Consensus 9 ~l~V~--Dle~s~~FY~~~LG~~~~~~ 33 (303)
T TIGR03211 9 ELRVL--DLEESLKHYTDVLGLEETGR 33 (303)
T ss_pred EEEeC--CHHHHHHHHHHhcCCEEeee
Confidence 47775 79999999999999988765
No 79
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=91.13 E-value=0.32 Score=31.86 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=21.8
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEee
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRN 43 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl 43 (71)
|.|+ |-.++++||+++||-++..|.
T Consensus 5 l~V~--Dle~s~~Fy~~vLG~~~~~~~ 29 (141)
T cd07258 5 IGSE--NFEASRDSLVEDFGFRVSDLI 29 (141)
T ss_pred EecC--CHHHHHHHHHhcCCCEeeeee
Confidence 6675 799999999999999988774
No 80
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=89.99 E-value=0.49 Score=33.31 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=22.3
Q ss_pred eEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 15 PQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
..|.|+ |.+++++||+++||.+.+.+
T Consensus 8 v~l~v~--Dl~~s~~FY~~vLGl~~~~~ 33 (294)
T TIGR02295 8 VELRVT--DLDKSREFYVDLLGFRETES 33 (294)
T ss_pred EEEEeC--CHHHHHHHHHHccCCEEEEe
Confidence 347886 79999999999999998765
No 81
>PRK06724 hypothetical protein; Provisional
Probab=88.90 E-value=0.77 Score=29.64 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=18.1
Q ss_pred EEEecCChhHHHHHHHHhh---CcEEE
Q 047456 17 LLVEASKATGSVQFYEIAF---GAVEI 40 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AF---GA~Ev 40 (71)
|.|+ |-+++++||+++| |.++.
T Consensus 13 l~V~--Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 13 FWVA--NLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred EEeC--CHHHHHHHHHHHHhhCCcEEe
Confidence 7786 7999999999987 55664
No 82
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=88.88 E-value=1.1 Score=33.41 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=25.4
Q ss_pred eEEEEecCChhHHHHHHHHhhCcEEEEeecCCCc
Q 047456 15 PQLLVEASKATGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
+.+.|+ |++++++||.+.||.+.+.+...+++
T Consensus 6 i~~~V~--D~~~a~~~y~~~LGf~~~~~~~~~~~ 37 (353)
T TIGR01263 6 VEFYVG--DAKQAAYYYFTRFGFEKVAKETGHRE 37 (353)
T ss_pred EEEEeC--CHHHHHHHHHHhcCCcEEEEeecCCc
Confidence 457886 79999999999999999887433333
No 83
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=88.01 E-value=0.77 Score=32.56 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=22.5
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
.|.|. |-+++++||.+.||.+...++.
T Consensus 147 ~l~v~--Dle~s~~FY~~~LGf~~~~~~~ 173 (286)
T TIGR03213 147 VLRVP--DVDAALAFYTEVLGFQLSDVID 173 (286)
T ss_pred EEEcC--CHHHHHHHHHHccCCeEEEeEc
Confidence 36775 7999999999999999877653
No 84
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=86.54 E-value=1 Score=27.19 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|. |-+++.+||+ .||.++..+
T Consensus 8 l~v~--d~~~s~~FY~-~lG~~~~~~ 30 (112)
T cd08344 8 LEVP--DLEVARRFYE-AFGLDVREE 30 (112)
T ss_pred EecC--CHHHHHHHHH-HhCCcEEee
Confidence 5664 7999999998 699988654
No 85
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=86.53 E-value=0.53 Score=33.37 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.9
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |-+++++||.++||.+++.+
T Consensus 9 l~V~--Dl~~s~~FY~~~LGl~~~~~ 32 (286)
T TIGR03213 9 IGVS--DVDAWREFATEVLGMMVASE 32 (286)
T ss_pred EEeC--CHHHHHHHHHhccCcccccC
Confidence 7786 79999999999999988754
No 86
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=86.30 E-value=1.6 Score=26.46 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.5
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
|.|+ |-+++.+||++ +|-++..|
T Consensus 9 l~v~--Dl~~s~~FY~~-lGl~~~~~ 31 (113)
T cd07267 9 FEHP--DLDKAERFLTD-FGLEVAAR 31 (113)
T ss_pred EccC--CHHHHHHHHHH-cCCEEEEe
Confidence 6675 79999999999 99988766
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=83.17 E-value=1.3 Score=33.13 Aligned_cols=26 Identities=31% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
+.|...|..++++||+++||.+++.+
T Consensus 164 i~V~~~dl~~~~~fY~~~lGf~~~~~ 189 (353)
T TIGR01263 164 GNVYRGQMEPWAEFYEKIFGFREIRS 189 (353)
T ss_pred cccCCccHHHHHHHHHHHhCCceeeE
Confidence 34532269999999999999988754
No 88
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=80.67 E-value=3.1 Score=26.42 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=22.4
Q ss_pred eEEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 15 PQLLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 15 P~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
=.|.|+. +=..||.||++ +|.+++.+..
T Consensus 129 ~~L~V~~-~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 129 IVLEVRE-SNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred EEEEEec-CChHHHHHHHH-cCCEEEeeeh
Confidence 4588883 66699999999 9999987654
No 89
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=69.91 E-value=6.4 Score=30.23 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=23.0
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
||.|. +..+|=+||+++||-+.+.|
T Consensus 173 HL~v~--~l~eA~~fY~~~LG~~~~~~ 197 (265)
T COG2514 173 HLKVA--DLEEAEQFYEDVLGLEVTAR 197 (265)
T ss_pred EEEeC--CHHHHHHHHHHhcCCeeeec
Confidence 68886 79999999999999999988
No 90
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=61.64 E-value=11 Score=28.96 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.5
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeec
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNM 44 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~ 44 (71)
.|.|+ |.+.+.+||++..|-+++.|..
T Consensus 15 ~L~vr--dL~~~~~FY~~ilGL~v~~~~~ 41 (265)
T COG2514 15 TLNVR--DLDSMTSFYQEILGLQVLEETD 41 (265)
T ss_pred EEEec--cHHHHHHHHHHhhCCeeeeccC
Confidence 38897 6999999999999999988733
No 91
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=61.47 E-value=10 Score=26.38 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.0
Q ss_pred ceeEEEEecCChhHHHHHHHHhhCcEEE
Q 047456 13 MKPQLLVEASKATGSVQFYEIAFGAVEI 40 (71)
Q Consensus 13 vtP~LvV~~~~Aa~AI~FYk~AFGA~Ev 40 (71)
++|-|.|. +-..-|+||++..|-..+
T Consensus 2 ~~PvlRVn--nR~~ni~FY~~~LGfkll 27 (125)
T PF14506_consen 2 IIPVLRVN--NRDLNIDFYQKTLGFKLL 27 (125)
T ss_dssp EEEEEEES--SHHHHHHHHTTTT--EEE
T ss_pred cCceEEEc--CHHHhHHHHHhccCcEEe
Confidence 57999997 799999999999998665
No 92
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=61.18 E-value=9.8 Score=30.25 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHhhCcEEEEe
Q 047456 23 KATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 23 ~Aa~AI~FYk~AFGA~Ev~R 42 (71)
+-..++.||+++||.++..+
T Consensus 190 ~ld~a~~fY~~vlGf~~~~~ 209 (398)
T PLN02875 190 NLLPAVNYIAGFTGFHEFAE 209 (398)
T ss_pred hHHHHHHHHHHhcCCeeeee
Confidence 67899999999999977643
No 93
>PHA01807 hypothetical protein
Probab=61.03 E-value=6.5 Score=26.81 Aligned_cols=26 Identities=8% Similarity=-0.044 Sum_probs=20.4
Q ss_pred eecccccceeEEEEecCChhHHHHHHHHh
Q 047456 6 TSTNFMGMKPQLLVEASKATGSVQFYEIA 34 (71)
Q Consensus 6 ~~~~~~tvtP~LvV~~~~Aa~AI~FYk~A 34 (71)
+..|+..| .|.|++ ++.+||.||++.
T Consensus 111 r~~G~~~l--~l~v~~-~n~~a~~~y~~~ 136 (153)
T PHA01807 111 GEGNLPLI--AFSHRE-GEGRYTIHYRRV 136 (153)
T ss_pred HHCCCCEE--EEEecC-CcHHHHHHHHhc
Confidence 34566665 788985 999999999975
No 94
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=60.25 E-value=7.5 Score=19.94 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=10.8
Q ss_pred ChhHHHHHHHHhh
Q 047456 23 KATGSVQFYEIAF 35 (71)
Q Consensus 23 ~Aa~AI~FYk~AF 35 (71)
+-.+||++|++++
T Consensus 14 ~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 14 DYEKAIEYYEQAL 26 (36)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5689999999976
No 95
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=57.74 E-value=10 Score=30.38 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHhhCcEEE
Q 047456 23 KATGSVQFYEIAFGAVEI 40 (71)
Q Consensus 23 ~Aa~AI~FYk~AFGA~Ev 40 (71)
.-..+..||++.||.+++
T Consensus 179 ~md~w~~FY~~if~~~~~ 196 (363)
T COG3185 179 QMDTWVLFYESLFGFREI 196 (363)
T ss_pred hHHHHHHHHHHHhCccce
Confidence 567899999999999886
No 96
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=56.46 E-value=11 Score=18.25 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=11.6
Q ss_pred CChhHHHHHHHHh
Q 047456 22 SKATGSVQFYEIA 34 (71)
Q Consensus 22 ~~Aa~AI~FYk~A 34 (71)
+|...|+.||+++
T Consensus 19 ~d~~~A~~~~~~A 31 (36)
T smart00671 19 KDLEKALEYYKKA 31 (36)
T ss_pred cCHHHHHHHHHHH
Confidence 4799999999987
No 97
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=49.75 E-value=37 Score=23.10 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=24.8
Q ss_pred ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
||-+|-=|.|=+..+...|+++.+++|+++.+..
T Consensus 75 gyaavDiftCg~~~~p~~a~~~L~~~f~~~~~~~ 108 (131)
T PRK01236 75 GLVTLDVYTCGDPSKADKAFEYIIKKLKPKRVDH 108 (131)
T ss_pred CeEEEEEEecCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4555555555543368999999999999997653
No 98
>PRK10314 putative acyltransferase; Provisional
Probab=47.00 E-value=15 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhCcEEEEeecCCCc
Q 047456 25 TGSVQFYEIAFGAVEISRNMETKR 48 (71)
Q Consensus 25 a~AI~FYk~AFGA~Ev~Rl~~PdG 48 (71)
..|+.||++ ||.+.+...-..+|
T Consensus 118 ~~a~~fY~k-~GF~~~g~~f~~~G 140 (153)
T PRK10314 118 AHLQNFYQS-FGFIPVTEVYEEDG 140 (153)
T ss_pred HHHHHHHHH-CCCEECCCccccCC
Confidence 458899999 99998877555566
No 99
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=43.06 E-value=23 Score=28.33 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=24.8
Q ss_pred cccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
-..|.-.|-|+ |-+++++||.+.||-.+ ++
T Consensus 246 ~~~IfVNLpV~--DL~rS~~FYt~LF~~n~-Fs 275 (357)
T PRK01037 246 PKTFSVVLEVQ--DLRRAKKFYSKMFGLEC-WD 275 (357)
T ss_pred CceEEEEeeeC--CHHHHHHHHHHHhCCCC-CC
Confidence 34567789997 79999999999999986 44
No 100
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=41.24 E-value=11 Score=25.03 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=6.4
Q ss_pred EEEEecCChhHHHHHHHHhhCc
Q 047456 16 QLLVEASKATGSVQFYEIAFGA 37 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA 37 (71)
.|-| +| +++.+||++.||.
T Consensus 10 ~LNV--~d-~~~~~fy~~~f~~ 28 (101)
T PF14507_consen 10 ELNV--PD-AKSQSFYQSIFGG 28 (101)
T ss_dssp EEEE---T--T---S--H---H
T ss_pred EEeC--CC-hhHHHHHHhcccc
Confidence 4667 47 6699999999984
No 101
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=39.44 E-value=49 Score=21.60 Aligned_cols=34 Identities=6% Similarity=0.077 Sum_probs=24.6
Q ss_pred ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
||-+|-=|.|=+.-+..+|+++.+++|+++++..
T Consensus 73 gyaavDiftCg~~~~p~~a~~~l~~~f~~~~~~~ 106 (112)
T TIGR03330 73 GYAAVDVFTCGDHSDPEKAFEYLVEALKPKRVEV 106 (112)
T ss_pred CcEEEEEEecCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4555555544432379999999999999988753
No 102
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=39.19 E-value=14 Score=18.23 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHhh
Q 047456 23 KATGSVQFYEIAF 35 (71)
Q Consensus 23 ~Aa~AI~FYk~AF 35 (71)
|-.+|+.||++|-
T Consensus 23 d~~~A~~~~~~Aa 35 (39)
T PF08238_consen 23 DYEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cccchHHHHHHHH
Confidence 5889999999873
No 103
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=36.88 E-value=56 Score=22.02 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=25.6
Q ss_pred ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
||-++-=|.|=+.-+...|+++.+++|+++++..
T Consensus 74 gyaavDiftCg~~~~p~~a~~~L~~~f~~~~~~~ 107 (127)
T PRK03124 74 GYAAVDVFTCGDRVDPWDACNYIAEGLGAKTREA 107 (127)
T ss_pred CeEEEEEEecCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4555555666553479999999999999998754
No 104
>PF15000 TUSC2: Tumour suppressor candidate 2
Probab=36.23 E-value=16 Score=25.03 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=32.2
Q ss_pred ccccceeEE-------EEecCChhHHHHHHHHhh---CcE-----EEEeecCCCcchhccccceeecee
Q 047456 9 NFMGMKPQL-------LVEASKATGSVQFYEIAF---GAV-----EISRNMETKRKAEQELNSRLPKDC 62 (71)
Q Consensus 9 ~~~tvtP~L-------vV~~~~Aa~AI~FYk~AF---GA~-----Ev~Rl~~PdGk~~~~~~~v~hael 62 (71)
++..++|+. .++ .|..-|=+||+++- |.. .+.+...|.|.+.-+.|. +|-++
T Consensus 38 ~~r~~~pfV~tr~sS~y~D-eDGdlAhEFYeE~v~~~g~~~~~l~rv~knL~PqG~v~l~~Pr-lhvDf 104 (111)
T PF15000_consen 38 PTRGATPFVFTRRSSMYFD-EDGDLAHEFYEEVVTKNGRKRAKLRRVQKNLRPQGIVKLDHPR-LHVDF 104 (111)
T ss_pred ccccccccEEecCCceeEc-CCcchhhhhhhhhhccCCccchhhhhhhhcCCccceeecCCCc-cccCC
Confidence 355666643 333 58999999999822 111 122345689998888775 45443
No 105
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=35.47 E-value=16 Score=15.90 Aligned_cols=8 Identities=38% Similarity=0.692 Sum_probs=5.7
Q ss_pred HHHHHHHh
Q 047456 27 SVQFYEIA 34 (71)
Q Consensus 27 AI~FYk~A 34 (71)
||++|++|
T Consensus 1 A~~~y~~A 8 (12)
T PF02071_consen 1 AIKCYEKA 8 (12)
T ss_pred CcHHHHHH
Confidence 56788776
No 106
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=34.13 E-value=64 Score=19.48 Aligned_cols=28 Identities=39% Similarity=0.638 Sum_probs=19.4
Q ss_pred cceeEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456 12 GMKPQLLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 12 tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
...|+|.++. +=..|+.||++ .|-+++.
T Consensus 54 g~~~~l~v~~-~N~~s~~ly~k-lGf~~~~ 81 (86)
T PF08445_consen 54 GKTPFLYVDA-DNEASIRLYEK-LGFREIE 81 (86)
T ss_dssp TSEEEEEEET-T-HHHHHHHHH-CT-EEEE
T ss_pred CCcEEEEEEC-CCHHHHHHHHH-cCCEEEE
Confidence 4578999983 67789999987 4666553
No 107
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=33.37 E-value=71 Score=21.41 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=25.6
Q ss_pred ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
||-++-=|.|=+.-+...|+++.+++|+++++..
T Consensus 76 gyaavDiftCg~~~~p~~a~~~L~~~l~~~~~~~ 109 (123)
T PRK01706 76 NFAAIDCYTCGTTVEPQIAIDYIVSILKPNEMHI 109 (123)
T ss_pred CeEEEEEEecCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4555555666543479999999999999998754
No 108
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=32.75 E-value=73 Score=21.48 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=24.7
Q ss_pred ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
||-+|-=|.|=+.-+...|+++.+++|+++++..
T Consensus 86 gyaavDiftCg~~~~p~~a~~~L~~~f~~~~~~~ 119 (127)
T PRK00458 86 NFATVDVYTCGEHTDPQKAFEYIVSKLKPKRYTV 119 (127)
T ss_pred CcEEEEEEecCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4555555555442378999999999999988753
No 109
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=32.42 E-value=71 Score=21.97 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=25.2
Q ss_pred ccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
||-+|-=|.|=+.-+...|+++.+++|+++.+..
T Consensus 87 gyaavDiftCg~~~~p~~a~~~L~~~l~~~~~~~ 120 (139)
T PRK02770 87 GYAAVDVFTCGDHTMPEKACQYLIEELMAKRHSL 120 (139)
T ss_pred CcEEEEEEecCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4555555555542379999999999999998754
No 110
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=31.50 E-value=67 Score=22.09 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=24.2
Q ss_pred ccccceeEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456 9 NFMGMKPQLLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 9 ~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
||-+|--|.|=+.-+...|+++.+++|+++.+.
T Consensus 74 gyaavDIftCg~~~~p~~a~~~L~~~f~~~~~~ 106 (139)
T PRK04025 74 GYAALDVYTCGEKADPEKAVDYILEQFKAKYAH 106 (139)
T ss_pred CeEEEEEEecCCCCCHHHHHHHHHHHhCCCeEE
Confidence 455555555554237999999999999998653
No 111
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=28.83 E-value=35 Score=20.11 Aligned_cols=12 Identities=8% Similarity=0.484 Sum_probs=9.4
Q ss_pred hhHHHHHHHHhh
Q 047456 24 ATGSVQFYEIAF 35 (71)
Q Consensus 24 Aa~AI~FYk~AF 35 (71)
=-+||+||++-+
T Consensus 70 kVDaIdyy~~el 81 (85)
T PF14703_consen 70 KVDAIDYYREEL 81 (85)
T ss_pred cchHHHHHHHHH
Confidence 458999998754
No 112
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.76 E-value=20 Score=25.13 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.7
Q ss_pred hhHHHHHHHHhhCcEEEEe
Q 047456 24 ATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 24 Aa~AI~FYk~AFGA~Ev~R 42 (71)
-.-+|+||+.+|.+-|+.|
T Consensus 8 ~~~v~~~y~~~~~~g~vek 26 (129)
T COG4922 8 KQVVIQFYRTLFEAGEVEK 26 (129)
T ss_pred HHHHHHHHHHHHHCCCHHH
Confidence 3459999999999888765
No 113
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=27.29 E-value=55 Score=15.67 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=10.3
Q ss_pred ChhHHHHHHHHhh
Q 047456 23 KATGSVQFYEIAF 35 (71)
Q Consensus 23 ~Aa~AI~FYk~AF 35 (71)
+-.+||++|++|.
T Consensus 16 ~~~~A~~~~~~al 28 (34)
T PF00515_consen 16 DYEEALEYYQRAL 28 (34)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 5678999999985
No 114
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=26.52 E-value=40 Score=26.76 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=13.1
Q ss_pred hhHHHHHHHHhhCcE
Q 047456 24 ATGSVQFYEIAFGAV 38 (71)
Q Consensus 24 Aa~AI~FYk~AFGA~ 38 (71)
-..||++|+++|..+
T Consensus 242 ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHcCC
Confidence 468999999999876
No 115
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=25.70 E-value=53 Score=23.65 Aligned_cols=13 Identities=8% Similarity=0.307 Sum_probs=11.2
Q ss_pred CChhHHHHHHHHh
Q 047456 22 SKATGSVQFYEIA 34 (71)
Q Consensus 22 ~~Aa~AI~FYk~A 34 (71)
+++.+|.+||+|-
T Consensus 97 K~~e~akdyfkRK 109 (153)
T KOG3048|consen 97 KDAEDAKDYFKRK 109 (153)
T ss_pred echHHHHHHHHHH
Confidence 4899999999973
No 116
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=25.17 E-value=71 Score=20.17 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=21.9
Q ss_pred cccceeEEEEecCChhHHHHHHHHhhCcEEEE
Q 047456 10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEIS 41 (71)
Q Consensus 10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~ 41 (71)
|-++-=|.|-+ -+..+|+++.+++|+++++.
T Consensus 69 ~~avDiftC~~-~~p~~a~~~l~~~f~~~~~~ 99 (106)
T PF02675_consen 69 YAAVDIFTCGE-FDPEKAIEYLKKAFKPDKVK 99 (106)
T ss_dssp EEEEEEEEEST-HHHHHHHHHHHHHHT-SEEE
T ss_pred eEEEEEEEcCC-CCHHHHHHHHHHHhCCCEEE
Confidence 44444455544 37899999999999999874
No 117
>KOG2870 consensus NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit [Energy production and conversion]
Probab=24.57 E-value=33 Score=28.15 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=32.2
Q ss_pred cccceeEEEEecCChhHHHHHHHHhhCcEEEEeecCCCcchhcccccee
Q 047456 10 FMGMKPQLLVEASKATGSVQFYEIAFGAVEISRNMETKRKAEQELNSRL 58 (71)
Q Consensus 10 ~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~~~~v~ 58 (71)
...+||++-.= ..-..-.+||++|=||+-..-.-.|.| +-|+||+=+
T Consensus 183 vGA~TPffw~F-eEREkl~ef~ErvsGaRmha~yiRpGG-va~DlPlG~ 229 (452)
T KOG2870|consen 183 VGAMTPFFWLF-EEREKLYEFYERVSGARMHANYIRPGG-VAQDLPLGL 229 (452)
T ss_pred cccccchhhhh-HHHHHHHHHHHHhhhhHhHHhhcCCCc-ccccCCchH
Confidence 34567765443 147889999999999966544445766 668888643
No 118
>PF09741 DUF2045: Uncharacterized conserved protein (DUF2045); InterPro: IPR019141 This entry is the conserved 250 residues of proteins of approximately 450 amino acids. It contains several highly conserved motifs including a CVxLxxxD motif. The function is unknown.
Probab=23.43 E-value=72 Score=24.15 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=10.9
Q ss_pred cEEEEeecCCCcc
Q 047456 37 AVEISRNMETKRK 49 (71)
Q Consensus 37 A~Ev~Rl~~PdGk 49 (71)
-.|-.||.+|+||
T Consensus 213 ~~efv~M~GP~Gk 225 (237)
T PF09741_consen 213 RTEFVRMRGPGGK 225 (237)
T ss_pred ceEEEEEECCCCc
Confidence 4577899999996
No 119
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=23.18 E-value=76 Score=20.97 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=14.4
Q ss_pred EEEecCChhHHHHHHHHhhCcEEEEeecCCC
Q 047456 17 LLVEASKATGSVQFYEIAFGAVEISRNMETK 47 (71)
Q Consensus 17 LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~Pd 47 (71)
+.| +|-.+|+++|++.+|.+...+-..|+
T Consensus 6 ~~v--~dl~~a~~~~~~~lGf~~~~gg~h~~ 34 (175)
T PF13468_consen 6 IAV--RDLDAAVERFEQRLGFTVTPGGEHPG 34 (175)
T ss_dssp EE---TTGGG----GGGS--S--EEEEE-TT
T ss_pred EEc--CCHHHHHHhhhhcceEeecCCCcCCC
Confidence 445 47999999999999998887755555
No 120
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=23.01 E-value=1.1e+02 Score=17.60 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=19.2
Q ss_pred CChhHHHHHHHHhhCcEEEEeecCC
Q 047456 22 SKATGSVQFYEIAFGAVEISRNMET 46 (71)
Q Consensus 22 ~~Aa~AI~FYk~AFGA~Ev~Rl~~P 46 (71)
+.+.++.++.++++|..+ .|-..|
T Consensus 21 ~~C~~~t~~lE~~LG~v~-~~e~t~ 44 (48)
T PF11211_consen 21 SSCLEATAALEEALGTVT-SRELTP 44 (48)
T ss_pred hhHHHHHHHHHHHhCcee-eeecCh
Confidence 468899999999999988 554444
No 121
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=21.85 E-value=1.3e+02 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=20.0
Q ss_pred EEEEecCChhHHHHHHHHhhCcEEEEeecC
Q 047456 16 QLLVEASKATGSVQFYEIAFGAVEISRNME 45 (71)
Q Consensus 16 ~LvV~~~~Aa~AI~FYk~AFGA~Ev~Rl~~ 45 (71)
+|.|. .+-..|+.||++ +|.+++.....
T Consensus 193 ~L~V~-~~N~~Ai~fY~k-lGf~~~~~y~~ 220 (547)
T TIGR03103 193 DLSVM-HDNEQAIALYEK-LGFRRIPVFAL 220 (547)
T ss_pred EEEEc-CCCHHHHHHHHH-CCCEEeeEEEE
Confidence 46665 256789999987 79988765443
No 122
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=20.53 E-value=90 Score=14.54 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=10.1
Q ss_pred ChhHHHHHHHHhh
Q 047456 23 KATGSVQFYEIAF 35 (71)
Q Consensus 23 ~Aa~AI~FYk~AF 35 (71)
+-.+||+.|+++.
T Consensus 16 ~~~~A~~~~~~al 28 (34)
T PF07719_consen 16 NYEEAIEYFEKAL 28 (34)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5678999999875
No 123
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=20.51 E-value=1.8e+02 Score=19.21 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=19.3
Q ss_pred cccccceeEEEEecCChhHHHHHHHHhhCcEEEEe
Q 047456 8 TNFMGMKPQLLVEASKATGSVQFYEIAFGAVEISR 42 (71)
Q Consensus 8 ~~~~tvtP~LvV~~~~Aa~AI~FYk~AFGA~Ev~R 42 (71)
.|++.+ ++.|.. +-..++.||++ +|.++..+
T Consensus 158 ~g~~~i--~l~v~~-~N~~a~~~yek-~Gf~~~~~ 188 (194)
T PRK10975 158 RGLTRL--RVATQM-GNLAALRLYIR-SGANIEST 188 (194)
T ss_pred cCCCEE--EEEeCC-CcHHHHHHHHH-CCCeEeEE
Confidence 344443 344542 34578999976 88887755
No 124
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=20.50 E-value=66 Score=15.48 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=8.9
Q ss_pred ChhHHHHHHHHhhCc
Q 047456 23 KATGSVQFYEIAFGA 37 (71)
Q Consensus 23 ~Aa~AI~FYk~AFGA 37 (71)
+-.+|+++|+++.-.
T Consensus 17 ~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 17 RYEEALELLEEALEI 31 (42)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHH
Confidence 456677777766544
No 125
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=20.22 E-value=80 Score=22.81 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHhhCcEEEEeecCCCcchhcc
Q 047456 22 SKATGSVQFYEIAFGAVEISRNMETKRKAEQE 53 (71)
Q Consensus 22 ~~Aa~AI~FYk~AFGA~Ev~Rl~~PdGk~~~~ 53 (71)
.+..++|...++.==-|+.-|||.|.+|.+.|
T Consensus 42 ~d~~~~L~~LkK~gLiE~qWrmP~pG~kPeKE 73 (160)
T PF09824_consen 42 KDVRESLLILKKGGLIESQWRMPEPGEKPEKE 73 (160)
T ss_pred cCHHHHHHHHHHcCchhhccccCCCCCCchHH
Confidence 36789999999987777788999999998766
Done!