BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047457
(235 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2
SV=1
Length = 507
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 50 FDCHLYVLAAAILKYLSQRDEVAELSGYAGPALI-----LAFSFPLQNSCMQSQLKSRVI 104
F LY + ILK + Q +A +I A + P+Q +Q+Q +
Sbjct: 146 FLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQR-FLQAQNIVNPL 204
Query: 105 AWS----FLVAVLSRCVLVYVPDFGVFGAAAAFDISGW--VSVFGMFGYSVFGGCPLTRN 158
A+ FL+ L ++ V DFG+ GAA S W V+V GM+ + C T
Sbjct: 205 AYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMY-ILMSPNCKETWT 263
Query: 159 GFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATL 204
GFS RAF GIW + KL+ A+ VMLCLE Y + L++++ L N T+
Sbjct: 264 GFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTI 309
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5
PE=2 SV=1
Length = 477
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 77 YAGPALILAFSFPLQNS---CMQSQLKSRVIAWSFL---VAVLSRCVLVYVPDFGVFGAA 130
Y P L LA+ F LQN C + + ++ +SF+ + + + VLVYV G GA
Sbjct: 165 YQAPGL-LAYGF-LQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAP 222
Query: 131 AAFDISGWVSVFGMFGYSVFG-GCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYC 189
A IS W++ + Y + T GFS+ +F I + LS + M+CLE
Sbjct: 223 IATSISLWIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAF 282
Query: 190 RILIMMTEYLKN 201
IL+ + + N
Sbjct: 283 EILVFLAGVMPN 294
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5
PE=2 SV=1
Length = 469
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 77 YAGPALILAFSFPLQNS---CMQSQLKSRVIAWSFLVAVL---SRCVLVYVPDFGVFGAA 130
Y P L LA+ F LQN C + + ++ +SFL V+ + LV++ G GA
Sbjct: 157 YLAPGL-LAYGF-LQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGLGFIGAP 214
Query: 131 AAFDISGWVSVFGMFGYSVFGGCPL--TRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRY 188
A IS W++ F G+ V T GFSM +F + + LS + M+CLE
Sbjct: 215 IATSISLWIA-FVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMVCLEYWA 273
Query: 189 CRILIMMTEYLKN 201
IL+ + ++N
Sbjct: 274 FEILVFLAGLMRN 286
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 38.1 bits (87), Expect = 0.056, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 59 AAILKYLSQRDEVAEL-SGYAGPALIL---AFSFP-------LQNSCMQSQLKSRVIAWS 107
AA + L+ R E EL + A P +I F+FP LQ+S Q+ + ++W
Sbjct: 4251 AAWTRDLAMRVEQFELWASRARPPVIFWLSGFTFPTGFLTAVLQSSARQNNVSVDSLSWE 4310
Query: 108 FLVAVLSRCVLVYVPDFGVFGAAAAFDISGW 138
F+V+ + LVY P GV+ + +GW
Sbjct: 4311 FIVSTVDDSNLVYPPKDGVWVRGLYLEGAGW 4341
>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis
GN=slc47a1 PE=2 SV=1
Length = 574
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 45 ILLQAFDC-HLYVLAAAILKYLSQRDEVAELSGYAG----PALILAFSFPLQNSCMQSQ- 98
+LL F C L + +IL Q EV++L+ PAL AF + L +Q+Q
Sbjct: 137 LLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQG 196
Query: 99 -LKSRVIAWSFLVAV---LSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGC- 153
+ +V+ F+ + L +L+YV GV G+A A +S ++ + +F Y V+
Sbjct: 197 IIYPQVLT-GFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLY 255
Query: 154 PLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLE 185
T G+S F F++L+ A+ +MLC+E
Sbjct: 256 ADTWGGWSQACFEEWGAFIRLAVASMLMLCIE 287
>sp|Q10085|YAO6_SCHPO Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=3 SV=1
Length = 455
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 61 ILKYLSQRDEVAELSG----YAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVA----V 112
IL +L Q E+AE S Y P + F L +Q+Q +R ++ LV V
Sbjct: 113 ILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNV 172
Query: 113 LSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFV 172
+LV+ G+ GA A +S W+S + Y+ + NG++ R FV
Sbjct: 173 ALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAKYVKGAEAWNGWNKRCLENFGPFV 232
Query: 173 KLSAAAGVMLCLE 185
KLS VM+ E
Sbjct: 233 KLSLLGIVMVGTE 245
>sp|P0C6F1|DYH2_MOUSE Dynein heavy chain 2, axonemal OS=Mus musculus GN=Dnah2 PE=2 SV=1
Length = 4456
Score = 34.3 bits (77), Expect = 0.81, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 74 LSGYAGPALILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAF 133
LSG+ P L + LQ++ Q+ + ++W F+V+ + LVY P GV+
Sbjct: 4308 LSGFTFPTGFL--TAVLQSAARQNNISVDSLSWEFIVSTVDDSNLVYPPKDGVWVRGLYL 4365
Query: 134 DISGW 138
+ +GW
Sbjct: 4366 EGAGW 4370
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3
SV=2
Length = 476
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 118 LVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGG-CPLTRNGFSMRAFSGIWDFVKLSA 176
LV G GAA A +S W + Y F C TR S S + F +
Sbjct: 198 LVSALGLGSNGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGV 257
Query: 177 AAGVMLCLENRYCRILIMMTEYLKNATL 204
+ MLCLE +LI+ + L+N L
Sbjct: 258 PSAAMLCLEWWLFELLILCSGLLQNPKL 285
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1
PE=2 SV=1
Length = 476
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 79/186 (42%), Gaps = 18/186 (9%)
Query: 31 GPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSG-YA--------GPA 81
G +S +A+ P L + L++ IL L Q E++ ++G YA G A
Sbjct: 106 GTYAYSAIASNIPICFLISI---LWLYIEKILISLGQDPEISRIAGSYAFWLIPALFGQA 162
Query: 82 LILAFS-FPLQNSCMQSQLKSRVIAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVS 140
+++ S F L + L + V + L VL LV++ G G A A +S W
Sbjct: 163 IVIPLSRFLLTQGLVIPLLFTAVT--TLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFY 220
Query: 141 VFGMFGYSVFGG-CPLTRNGFSMRAF-SGIWDFVKLSAAAGVMLCLENRYCRILIMMTEY 198
+ Y F C TR GF R F S I F + + M+CLE ILI+ +
Sbjct: 221 AVILSCYVRFSSSCEKTR-GFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGL 279
Query: 199 LKNATL 204
L N L
Sbjct: 280 LPNPKL 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,569,461
Number of Sequences: 539616
Number of extensions: 3117186
Number of successful extensions: 7908
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7899
Number of HSP's gapped (non-prelim): 21
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)