Query 047457
Match_columns 235
No_of_seqs 112 out of 1270
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 8.2E-34 1.8E-38 261.1 21.1 210 19-230 12-302 (455)
2 PRK10367 DNA-damage-inducible 100.0 1.5E-30 3.2E-35 238.7 21.1 210 19-230 4-293 (441)
3 PRK10189 MATE family multidrug 100.0 4.7E-28 1E-32 224.2 23.6 220 9-230 11-320 (478)
4 PRK00187 multidrug efflux prot 100.0 4.1E-28 8.9E-33 223.8 22.9 209 20-230 6-297 (464)
5 KOG1347 Uncharacterized membra 99.9 1.7E-26 3.6E-31 212.9 19.9 210 17-229 21-309 (473)
6 PRK09575 vmrA multidrug efflux 99.9 5.1E-26 1.1E-30 209.2 21.5 208 21-230 9-296 (453)
7 PRK01766 multidrug efflux prot 99.9 4E-25 8.8E-30 202.9 21.9 212 17-230 5-300 (456)
8 TIGR00797 matE putative efflux 99.8 2.1E-18 4.5E-23 151.9 20.2 176 54-231 90-278 (342)
9 TIGR01695 mviN integral membra 99.6 8.6E-13 1.9E-17 122.2 22.1 174 54-231 100-286 (502)
10 PRK15099 O-antigen translocase 99.5 6E-12 1.3E-16 114.4 21.1 174 54-231 98-279 (416)
11 PRK01766 multidrug efflux prot 99.4 8.8E-12 1.9E-16 114.6 15.3 131 19-150 234-441 (456)
12 PRK00187 multidrug efflux prot 99.4 2.4E-11 5.2E-16 112.4 16.0 127 19-146 231-439 (464)
13 TIGR02900 spore_V_B stage V sp 99.3 8E-10 1.7E-14 101.9 20.7 202 27-230 2-297 (488)
14 PRK09575 vmrA multidrug efflux 99.1 4.2E-09 9E-14 97.1 15.1 130 19-151 229-436 (453)
15 PRK10189 MATE family multidrug 99.0 1.7E-08 3.8E-13 93.8 17.7 131 19-150 254-461 (478)
16 TIGR02900 spore_V_B stage V sp 99.0 1.8E-08 4E-13 92.9 17.3 126 19-149 220-432 (488)
17 TIGR01695 mviN integral membra 99.0 4.7E-08 1E-12 90.6 17.7 154 19-182 218-452 (502)
18 COG0534 NorM Na+-driven multid 99.0 3.1E-08 6.6E-13 91.6 16.3 133 17-151 234-443 (455)
19 PF03023 MVIN: MviN-like prote 98.7 6.7E-06 1.4E-10 76.0 21.8 173 54-230 74-260 (451)
20 PF03023 MVIN: MviN-like prote 98.6 8E-06 1.7E-10 75.5 19.4 130 21-151 195-403 (451)
21 PRK10367 DNA-damage-inducible 98.5 8.4E-06 1.8E-10 75.1 16.8 127 20-150 228-430 (441)
22 COG0728 MviN Uncharacterized m 98.3 8.1E-05 1.8E-09 69.7 18.9 128 21-151 229-437 (518)
23 PRK10459 colanic acid exporter 98.3 4.1E-05 8.9E-10 71.0 16.9 128 20-150 203-404 (492)
24 PF01554 MatE: MatE; InterPro 98.3 3.9E-07 8.6E-12 71.5 2.4 85 32-117 1-158 (162)
25 PRK15099 O-antigen translocase 98.1 0.00026 5.7E-09 64.3 16.9 128 19-149 210-410 (416)
26 COG2244 RfbX Membrane protein 98.0 0.0006 1.3E-08 62.9 18.8 129 19-150 208-409 (480)
27 PF01943 Polysacc_synt: Polysa 98.0 0.0034 7.3E-08 52.6 20.3 140 85-231 123-268 (273)
28 PF14667 Polysacc_synt_C: Poly 97.8 0.0017 3.7E-08 50.0 14.8 66 83-151 11-80 (146)
29 COG0728 MviN Uncharacterized m 97.4 0.07 1.5E-06 50.3 22.1 157 55-217 109-280 (518)
30 PF13440 Polysacc_synt_3: Poly 97.3 0.029 6.3E-07 46.5 16.8 139 83-231 103-247 (251)
31 PRK10459 colanic acid exporter 97.1 0.088 1.9E-06 48.8 19.5 125 84-216 125-255 (492)
32 TIGR00797 matE putative efflux 96.4 0.015 3.2E-07 50.9 8.2 35 19-53 211-245 (342)
33 COG2244 RfbX Membrane protein 95.8 1.5 3.2E-05 40.4 19.1 142 85-230 131-275 (480)
34 PF01554 MatE: MatE; InterPro 95.8 0.0057 1.2E-07 47.6 2.0 53 177-230 1-54 (162)
35 KOG1347 Uncharacterized membra 83.7 3 6.6E-05 39.0 6.3 66 165-231 24-91 (473)
36 PF04506 Rft-1: Rft protein; 75.7 63 0.0014 31.0 12.4 89 57-150 366-469 (549)
37 PF01943 Polysacc_synt: Polysa 71.0 9.5 0.00021 31.4 5.2 34 20-53 201-234 (273)
38 PF04172 LrgB: LrgB-like famil 60.0 64 0.0014 27.0 8.0 34 20-53 67-100 (215)
39 PF07260 ANKH: Progressive ank 58.6 1.4E+02 0.003 26.8 18.7 37 165-201 231-268 (345)
40 TIGR00659 conserved hypothetic 49.4 1.3E+02 0.0028 25.4 8.1 34 20-53 77-110 (226)
41 PRK04288 antiholin-like protei 47.6 1.4E+02 0.003 25.4 8.0 33 21-53 84-116 (232)
42 COG3162 Predicted membrane pro 47.2 81 0.0018 23.0 5.7 36 7-42 3-38 (102)
43 PRK10711 hypothetical protein; 42.5 2.1E+02 0.0046 24.2 8.5 33 21-53 79-111 (231)
44 COG1346 LrgB Putative effector 32.3 3.1E+02 0.0068 23.2 7.8 41 20-60 80-120 (230)
45 PF04142 Nuc_sug_transp: Nucle 28.9 1.2E+02 0.0026 25.6 5.0 29 10-38 1-29 (244)
46 COG3366 Uncharacterized protei 28.1 4.3E+02 0.0093 23.5 14.6 115 22-145 177-306 (311)
47 PF05106 Phage_holin_3: Phage 24.8 2.7E+02 0.0059 20.1 7.3 62 17-78 5-80 (100)
48 PF13440 Polysacc_synt_3: Poly 24.2 1.3E+02 0.0027 24.4 4.2 28 26-53 185-212 (251)
49 TIGR01594 holin_lambda phage h 21.6 3.4E+02 0.0073 20.0 8.8 35 44-78 48-82 (107)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=8.2e-34 Score=261.11 Aligned_cols=210 Identities=17% Similarity=0.136 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
..++.|+++++|+|++++++++.+++++|++|+||
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 55799999999999999999999999999999999
Q ss_pred ----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 047457 54 ----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAW 106 (235)
Q Consensus 54 ----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~ 106 (235)
.+.+.++++.++|.++|+.+.+.+| ..+. +..++.++++ ++|++||+|.+|+
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~-~lr~~G~~~~~m~ 170 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSG-ILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCchhHH
Confidence 5678999999999999999999999 4555 8889999999 9999999999999
Q ss_pred HHHHHHHh----HhHHhhc-cC-CCcchHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCchHhhhcHHHHHHHHhHH
Q 047457 107 SFLVAVLS----RCVLVYV-PD-FGVFGAAAAFDISGWVSVFGMFGYSVFGGC--PLTRNGFSMRAFSGIWDFVKLSAAA 178 (235)
Q Consensus 107 ~~~i~~~~----~~~lI~~-~~-lGv~GaAiAt~is~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~lg~P~ 178 (235)
++++++++ ||+|||+ ++ ||+.|||+||++++++.+++.+.|+.+++. ........+..++.+|+++|+|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 99999887 9999998 68 999999999999999999999888887642 2221222233458899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 179 GVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 179 ~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
++++..|...+.+.+.+++++|++++|| +++ .++.++.++++.|+++|.+|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~-~~i~~~~~~~~~gi~~a~~~ 302 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTVALAAYGIA-LRIASFIFMPPFGIAQAVTI 302 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999 99999999999999999876
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=238.73 Aligned_cols=210 Identities=13% Similarity=-0.002 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.|++.|+++++++|++++++++.+++++|++|+||
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46889999999999999999999999999999999
Q ss_pred -----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHH
Q 047457 54 -----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIA 105 (235)
Q Consensus 54 -----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~ 105 (235)
.+.+.++++.++|+|||+.+.+.+| .++. +..+..+++. ++|++||++.++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~-~lr~~G~~~~~~ 162 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLG-WLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcccchHHH
Confidence 2346688889999999999999999 4445 7778888888 999999999999
Q ss_pred HHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc-cCCC-CCCCCchHhhhcHHHHHHHHhHHH
Q 047457 106 WSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG-GCPL-TRNGFSMRAFSGIWDFVKLSAAAG 179 (235)
Q Consensus 106 ~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~lg~P~~ 179 (235)
+++++++++ ||+|+++++||+.|+|+||.+++++.+++...++.++ +.+. +.+.++.+..+.+|+++|+|.|.+
T Consensus 163 ~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 163 ILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHH
Confidence 999988776 9999999999999999999999999988877776653 2111 111111111246899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 180 VMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 180 ~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
++...+..++.+.+.+++++|++++|| +|+ .++.++.++++.|+++|++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~-~~i~~~~~~~~~gl~~a~~~ 293 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLGSDIIAVNAVL-MTLLTFTAYALDGFAYAVEA 293 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999 999 99999999999999999876
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.96 E-value=4.7e-28 Score=224.23 Aligned_cols=220 Identities=14% Similarity=0.089 Sum_probs=183.2
Q ss_pred hhhhhHhh-HHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 047457 9 TEVTNQIR-DKIWIE--SKKVWCIAGPAPFSLLAAYCPNILLQAFDCH-------------------------------- 53 (235)
Q Consensus 9 ~~~~~~~~-~~~~~~--~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~-------------------------------- 53 (235)
.|.|.-|+ |+.|+. .|+++++++|++++++++.+++++|+.|+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~ 90 (478)
T PRK10189 11 VHGTRWYAKRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTV 90 (478)
T ss_pred HhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 556766 9999999999999999999999999999999
Q ss_pred -----------------------------------HHHhhHHHHHHc--CCChHHHHHHHhH----hHHH-HHHHHHHHH
Q 047457 54 -----------------------------------LYVLAAAILKYL--SQRDEVAELSGYA----GPAL-ILAFSFPLQ 91 (235)
Q Consensus 54 -----------------------------------~~~~~~~il~~~--g~~~~l~~~a~~Y----i~~~-~~~~~~~l~ 91 (235)
.+.+.++++.++ +.|+|+.+++.+| .++. +..+...++
T Consensus 91 lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~ 170 (478)
T PRK10189 91 VVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGS 170 (478)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999 4799999999999 4455 777788888
Q ss_pred HHHHhhcchhHHHHHHHHHHHHh----HhHHhhcc----CCCcchHHHHHHHHHHHHHHHHHHHHHhc-c--CCCCCCC-
Q 047457 92 NSCMQSQLKSRVIAWSFLVAVLS----RCVLVYVP----DFGVFGAAAAFDISGWVSVFGMFGYSVFG-G--CPLTRNG- 159 (235)
Q Consensus 92 ~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~~~----~lGv~GaAiAt~is~~~~~~~~~~~~~~~-~--~~~~~~~- 159 (235)
+ ++|++||++.+++++++++++ ||+|+++. +||+.|+|+||.+++++..++...++.++ + .+.+++.
T Consensus 171 ~-~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (478)
T PRK10189 171 G-ALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSY 249 (478)
T ss_pred H-HHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccc
Confidence 8 999999999999999887664 99999863 79999999999999999887766555433 1 1212211
Q ss_pred CchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 160 FSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 160 ~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
+.+..++.+|+++|+|+|.+++...+...+.+.+.+++.+|++++|| +|+ .|+.++.++++.|+++|++|
T Consensus 250 ~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~-~~i~~~~~~~~~gi~~A~~~ 320 (478)
T PRK10189 250 FKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIA-FSIAALINLPGNALGSASTI 320 (478)
T ss_pred cccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 11224578999999999999999888888888888899999999999 999 99999999999999999875
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.96 E-value=4.1e-28 Score=223.80 Aligned_cols=209 Identities=13% Similarity=0.035 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------- 53 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------- 53 (235)
+++.|+++++++|++++++++.+++++|++++||
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~ 85 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGA 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence 4678999999999999999999999999999999
Q ss_pred --------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHH
Q 047457 54 --------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSF 108 (235)
Q Consensus 54 --------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~ 108 (235)
...+.++++.++++|||+.+.+.+| .++. +..+...+++ ++|++|+++++++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~-~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 86 TRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRG-FTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHH
Confidence 3446789999999999999999999 4455 7788888888 999999999999998
Q ss_pred HHHHHh----HhHHhhcc----CCCcchHHHHHHHHHHHHHHHHHHHHHhcc-CC-CC-CCCCchHhhhcHHHHHHHHhH
Q 047457 109 LVAVLS----RCVLVYVP----DFGVFGAAAAFDISGWVSVFGMFGYSVFGG-CP-LT-RNGFSMRAFSGIWDFVKLSAA 177 (235)
Q Consensus 109 ~i~~~~----~~~lI~~~----~lGv~GaAiAt~is~~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~l~lg~P 177 (235)
.+++++ ||+|||+. +||+.|+|+||++++++..+....|+++++ .+ .+ ++.+.+..++.+|+++|+|+|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 887776 99999873 599999999999999988877666766542 21 11 212222345778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 178 AGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 178 ~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
.++++..|...+.+.+.+++++|++++|+ +++ .|+..+.++++.|++.|.+|
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~-~~i~~l~~~~~~gi~~a~~~ 297 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALGSTQLAAHQIA-LQIVSVAFMVPVGLSYAVTM 297 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 999 99999999999999998765
No 5
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=212.86 Aligned_cols=210 Identities=30% Similarity=0.402 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457 17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH------------------------------------------- 53 (235)
Q Consensus 17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~------------------------------------------- 53 (235)
+..+.|.|+++++|.|+++..+.+...+++|++|+||
T Consensus 21 ~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~ 100 (473)
T KOG1347|consen 21 SQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKK 100 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccc
Confidence 3358999999999999999999999999999999999
Q ss_pred ------------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457 54 ------------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVI 104 (235)
Q Consensus 54 ------------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~ 104 (235)
.|.+.++++..+|+|||+.+.+..| +|.+ .+.....+++ |+|+|++..+.
T Consensus 101 ~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~-~lq~Q~~~~~~ 179 (473)
T KOG1347|consen 101 FTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAK-FLQAQSITLPL 179 (473)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHH-HHHhccCchHH
Confidence 6788899999999999999999999 8888 9999999999 99999999999
Q ss_pred HHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhHHHH
Q 047457 105 AWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGV 180 (235)
Q Consensus 105 ~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~ 180 (235)
.+++..+.++ ||+|++.+++|+.|++++..++.|+.......|+....+..+|.+++++ +++|++++|+++|+++
T Consensus 180 ~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~ 258 (473)
T KOG1347|consen 180 LVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAV 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchh
Confidence 9999988887 9999999999999999999999999999999998876777889998887 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCc--chhhh-HHhHHhHhHHHHHhhhhhhcCCC
Q 047457 181 MLCLENRYCRILIMMTEYLKN--ATLII-CGCFVMSLGWQWAPPAAGLSLPN 229 (235)
Q Consensus 181 ~~~~e~~~~~i~~~l~~~~G~--~~vAa-~I~~~~i~~l~~~~~~g~~~a~~ 229 (235)
+.|+|+|.+++..++.|.+++ .++++ +|+ .++.+..++.+.|++.|++
T Consensus 259 miclE~w~~eil~l~~G~l~np~~~~~~~sI~-~~~~~~~~~~~~~~~~a~s 309 (473)
T KOG1347|consen 259 MICLEWWAYEILVLLAGLLGNAKVSLASQSIC-LEIGGWHLMIPGAFSAAVS 309 (473)
T ss_pred eeHHHHHHHHHHHHHHhccCCcHHHHHHHHHH-HHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999996 56677 999 9999999999999998854
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.95 E-value=5.1e-26 Score=209.19 Aligned_cols=208 Identities=13% Similarity=0.027 Sum_probs=178.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q 047457 21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------- 53 (235)
Q Consensus 21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------- 53 (235)
+..|+++++++|++++++.+.+++++|+.|+||
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~ 88 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEKA 88 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHHH
Confidence 567899999999999999999999999999999
Q ss_pred ---------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457 54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS 107 (235)
Q Consensus 54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~ 107 (235)
.+.+.++++.+++.|+|+.+.+.+| .++. +..++..+.. ++|+.|+++.+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~-~l~~~g~~~~~~~~ 167 (453)
T PRK09575 89 KRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPF-LLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCChHHHHHH
Confidence 4567899999999999999999999 4455 6677888888 99999999999999
Q ss_pred HHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CchHhhhcHHHHHHHHhHHHHHH
Q 047457 108 FLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNG-FSMRAFSGIWDFVKLSAAAGVML 182 (235)
Q Consensus 108 ~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~lg~P~~~~~ 182 (235)
+++++++ ||+|+++++||+.|+|+||.+++++.+++..+|+.+++.+.+++. ..+..++.+|+++++|+|.+++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 9888765 999999999999999999999999998887777765532222211 11223467899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCc-chhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 183 CLENRYCRILIMMTEYLKN-ATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 183 ~~e~~~~~i~~~l~~~~G~-~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
..+...+.+.+.+.+++|+ +++|+ ++. .++..+.+++..|+++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~lAa~~i~-~~i~~~~~~~~~gi~~a~~~ 296 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGSALTVGAYAIV-GYLMVLYYLVAEGIAEGMQP 296 (453)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence 9888888888888888886 57999 999 99999999999999999876
No 7
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.94 E-value=4e-25 Score=202.90 Aligned_cols=212 Identities=16% Similarity=0.164 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457 17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH------------------------------------------- 53 (235)
Q Consensus 17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~------------------------------------------- 53 (235)
|+.+++.|+++++++|..++++.+.+++.+|+.++||
T Consensus 5 ~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 5 QKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4456889999999999999999999999999999998
Q ss_pred ------------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457 54 ------------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVI 104 (235)
Q Consensus 54 ------------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~ 104 (235)
.+.+.++++.+++.|+|+.+.+.+| .++. +..+...+++ ++|++|+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~-~l~~~g~~~~~ 163 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRS-FIDGLGKTKPT 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCChHH
Confidence 3455688999999999999999999 3455 7788888888 99999999999
Q ss_pred HHHHHHHHHh----HhHHhhc----cCCCcchHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCCCCchHhhhcHHHHHH
Q 047457 105 AWSFLVAVLS----RCVLVYV----PDFGVFGAAAAFDISGWVSVFGMFGYSVFGG-CP--LTRNGFSMRAFSGIWDFVK 173 (235)
Q Consensus 105 ~~~~~i~~~~----~~~lI~~----~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~ 173 (235)
++.++++.++ ||+|+++ +++|+.|+|+||.+++++..++..+++++++ .+ +.+..+.+..++.+|++++
T Consensus 164 ~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~ 243 (456)
T PRK01766 164 MVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLK 243 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHH
Confidence 9999988776 8999985 3699999999999999999888777766542 11 1122222233567999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 174 LSAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 174 lg~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
+|+|..++...|...+.+.+.+++++|++++|+ ++. .++..+.++++.|++.|.+|
T Consensus 244 l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~-~~i~~~~~~~~~gl~~a~~~ 300 (456)
T PRK01766 244 LGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIA-LNFSSLLFMLPLSLAMALTI 300 (456)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999 99999999999999998875
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.82 E-value=2.1e-18 Score=151.93 Aligned_cols=176 Identities=18% Similarity=0.188 Sum_probs=144.8
Q ss_pred HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh----HhHHhh-ccC
Q 047457 54 LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS----RCVLVY-VPD 123 (235)
Q Consensus 54 ~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~-~~~ 123 (235)
.+++.+++..+++.|+|..+++.+| .++. +..+...... ++|+.|+++.+++.+++.+++ ++++++ .++
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g 168 (342)
T TIGR00797 90 GYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRG-FLRGQGDTKTPMYITLIGNVINIILNYILIFGKFG 168 (342)
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCcc
Confidence 4567889999999899999999999 3444 6677777777 999999999999999887766 788887 578
Q ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047457 124 -FGVFGAAAAFDISGWVSVFGMFGYSVFG-GCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKN 201 (235)
Q Consensus 124 -lGv~GaAiAt~is~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~ 201 (235)
+|+.|+++++.+++++.+++...+.+++ +.+.+|+...+...+.+|++++.|+|..+....++..+.+.+.+.+.+|+
T Consensus 169 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~ 248 (342)
T TIGR00797 169 FLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGS 248 (342)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999888776665543 33333322222335788999999999999999999998888888999999
Q ss_pred chhhh-HHhHHhHhHHHHHhhhhhhcCCCCC
Q 047457 202 ATLII-CGCFVMSLGWQWAPPAAGLSLPNPN 231 (235)
Q Consensus 202 ~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p~ 231 (235)
+++++ +++ .++..+..+++.+++.+.+|.
T Consensus 249 ~~v~~~~~a-~~~~~~~~~~~~~~~~a~~~~ 278 (342)
T TIGR00797 249 IALAAHQIA-LNVESLLFMPAFGFGIAVSIL 278 (342)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999 999 999999999999999988763
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.56 E-value=8.6e-13 Score=122.18 Aligned_cols=174 Identities=13% Similarity=0.116 Sum_probs=133.5
Q ss_pred HHHhhHHHHHHc--CCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhH--hHHhhccCC
Q 047457 54 LYVLAAAILKYL--SQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSR--CVLVYVPDF 124 (235)
Q Consensus 54 ~~~~~~~il~~~--g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~--~~lI~~~~l 124 (235)
.+.+++++..++ |.|+|..+++.+| .++. +..+....+. ++|+.|+.+.+++.+++.++++ .++++..++
T Consensus 100 ~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~ 178 (502)
T TIGR01695 100 GIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGG-ILNARKRFFIPSFSPILFNIGVILSLLFFDWNY 178 (502)
T ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCeeHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345678888888 6788988999999 4555 6677778888 9999999999999999888773 234445689
Q ss_pred CcchHH--HHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 047457 125 GVFGAA--AAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNA 202 (235)
Q Consensus 125 Gv~GaA--iAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~~ 202 (235)
|+.|++ ++|.+++.+..++...+.++++.+. +..++ ...+.+|++++.|.|..++...+.....+...+.+.+|++
T Consensus 179 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~ 256 (502)
T TIGR01695 179 GQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLL-KPRFN-FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG 256 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-cCcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999 9999999998887666655432211 11111 1236789999999999999988888888777888888999
Q ss_pred hhhh-HHhHHhHhHHHHH-hhhhhhcCCCCC
Q 047457 203 TLII-CGCFVMSLGWQWA-PPAAGLSLPNPN 231 (235)
Q Consensus 203 ~vAa-~I~~~~i~~l~~~-~~~g~~~a~~p~ 231 (235)
++++ +++ .++..+... +..+++++..|.
T Consensus 257 ~v~~~~~a-~~l~~~~~~~~~~~i~~~~~P~ 286 (502)
T TIGR01695 257 SVSALYYA-NRIYQLPLGIFGISLSTVLLPK 286 (502)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 998 888877654 466777776653
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=99.49 E-value=6e-12 Score=114.36 Aligned_cols=174 Identities=14% Similarity=-0.039 Sum_probs=129.1
Q ss_pred HHHhhHHHHHHcCCChHHHHHHHhH-hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhHhHH-hhccCC-CcchH
Q 047457 54 LYVLAAAILKYLSQRDEVAELSGYA-GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRCVL-VYVPDF-GVFGA 129 (235)
Q Consensus 54 ~~~~~~~il~~~g~~~~l~~~a~~Y-i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~~~l-I~~~~l-Gv~Ga 129 (235)
.+.+.+++...++.|+| ......| .+.. ...+.....+ .+|+.||++.++..+++++++|.++ ++.+++ |+.|+
T Consensus 98 ~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~lr~~~~~~~~~~~~~~~~~~~i~l~i~~~~~~Gv~Ga 175 (416)
T PRK15099 98 FLLAAAPISQGLFGHTD-YQGVVRAVALIQMGIAWANLLLA-ILKGFRDAAGNALSLIVGSLIGVAAYYLCYRLGGYEGA 175 (416)
T ss_pred HHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 35677899998888887 4455555 4444 4455666777 9999999999999999888886432 333333 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-
Q 047457 130 AAAFDISGWVSVFGMFGYSVFGGC-PLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT-EYLKNATLII- 206 (235)
Q Consensus 130 AiAt~is~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~-~~~G~~~vAa- 206 (235)
++||+++|.+..+....++.+++. +.++..++ .+.+.+|++++.|.|..+++...+......+.+. ..+|+++++.
T Consensus 176 ~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y 254 (416)
T PRK15099 176 LLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIW 254 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHH
Confidence 999999999887776666654421 11111111 2246789999999999999988777777777667 4999999999
Q ss_pred HHhHHhHhH-HHHHhhhhhhcCCCCC
Q 047457 207 CGCFVMSLG-WQWAPPAAGLSLPNPN 231 (235)
Q Consensus 207 ~I~~~~i~~-l~~~~~~g~~~a~~p~ 231 (235)
+++ .++.. +...+..+++++..|-
T Consensus 255 ~~a-~~i~~~~~~~~~~~~~~a~~P~ 279 (416)
T PRK15099 255 QGV-SSISDAYLQFITASFSVYLLPT 279 (416)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99976 5689999999998884
No 11
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.39 E-value=8.8e-12 Score=114.59 Aligned_cols=131 Identities=14% Similarity=0.093 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.+++.|+++++++|..++++.+.....+|..++++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 46789999999999999999999999999998888
Q ss_pred ----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 047457 54 ----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAW 106 (235)
Q Consensus 54 ----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~ 106 (235)
.+.+.+++.++++.|||+.+.+..| .++. +..+..++.+ ++|+.||++.+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~g~g~~~~~~~ 392 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSG-ALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhccCccHHHHH
Confidence 4567899999999999999999999 3333 6677888888 9999999999999
Q ss_pred HHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457 107 SFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF 150 (235)
Q Consensus 107 ~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~ 150 (235)
.++++..+ .|++.+..++|+.|+++++.+++++..++..+++.+
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99987643 677777788999999999999999998876555443
No 12
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.36 E-value=2.4e-11 Score=112.38 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.+++.|+++|+++|+.++++++.....+|+.++||
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~ 310 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLE 310 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 45778999999999999999999999999999999
Q ss_pred ----------------------HHHhhHHHHHHcCC--Ch---HHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchh
Q 047457 54 ----------------------LYVLAAAILKYLSQ--RD---EVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKS 101 (235)
Q Consensus 54 ----------------------~~~~~~~il~~~g~--~~---~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~ 101 (235)
.+.+.+++++++.. |+ |+.+.+..| .++. +..+..++.+ .+|+.||+
T Consensus 311 ~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~-~lrg~G~~ 389 (464)
T PRK00187 311 ARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG-AIRGLKDA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-hHhccCcc
Confidence 46688999999842 44 788999999 3344 7777888888 99999999
Q ss_pred HHHHHHHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHH
Q 047457 102 RVIAWSFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFG 146 (235)
Q Consensus 102 ~~~~~~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~ 146 (235)
+.+++++++...+ +|++++.+++|+.|+++++.+++++..++...
T Consensus 390 ~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~ 439 (464)
T PRK00187 390 RTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTL 439 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHH
Confidence 9999999987732 88999988999999999999999887665543
No 13
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.27 E-value=8e-10 Score=101.91 Aligned_cols=202 Identities=10% Similarity=0.051 Sum_probs=131.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------------
Q 047457 27 WCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------------- 53 (235)
Q Consensus 27 l~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------------- 53 (235)
+|-+.|..++++.+.+.+.+|+.+++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 355788899999999999999999988
Q ss_pred ----------------HHHhhHHHHHHcCCChHHHHHHHhHhHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh--
Q 047457 54 ----------------LYVLAAAILKYLSQRDEVAELSGYAGPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS-- 114 (235)
Q Consensus 54 ----------------~~~~~~~il~~~g~~~~l~~~a~~Yi~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~-- 114 (235)
.+.+.+.+...++.|++.....+.+.+.. +..+....+. ++|+.++.+..+..+.+..++
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~i~~i~~~ 160 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKG-YFQGISNMKPPAYIQVIEQIVRI 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccchHhHHHHHHHHHHHH
Confidence 22344555565666666543322223444 5566777777 999999999999998887666
Q ss_pred --HhHHhh-----ccCCCcchHHHHHHHHHHHHHHHHHHHHHhc-cCC--CCCCCCchHhhhcHHHHHHHHhHHHHHHHH
Q 047457 115 --RCVLVY-----VPDFGVFGAAAAFDISGWVSVFGMFGYSVFG-GCP--LTRNGFSMRAFSGIWDFVKLSAAAGVMLCL 184 (235)
Q Consensus 115 --~~~lI~-----~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~ 184 (235)
+..+++ +.++|+.|+++++.+++++..+....+.+++ +.+ ..+..+.+..++.+|++++.|+|..+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~ 240 (488)
T TIGR02900 161 SVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFI 240 (488)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 333333 2357899999999999999988766555443 211 111111122346789999999999999888
Q ss_pred HHHHHHHHHHHHhcC----Cc---chhhh-H----HhHHhHhHHHHHhhhhhhcCCCC
Q 047457 185 ENRYCRILIMMTEYL----KN---ATLII-C----GCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 185 e~~~~~i~~~l~~~~----G~---~~vAa-~----I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
+.....+-+.+.++. |. ++.+. + ++ .++..+...+..+++++..|
T Consensus 241 ~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a-~~i~~~~~~~~~~l~~~~~p 297 (488)
T TIGR02900 241 GSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMA-MPLLTFPAVITSSLSTALVP 297 (488)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChH-HHHHHhHHHHHHHHHHHHHH
Confidence 777666555554432 22 11222 2 22 34455555556777777665
No 14
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.06 E-value=4.2e-09 Score=97.11 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.++..|+++++++|..++++.......+-..++++
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~ 308 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYD 308 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChH
Confidence 35678999999999999998887766654433332
Q ss_pred -----------------------HHHhhHHHHHHcCC-ChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457 54 -----------------------LYVLAAAILKYLSQ-RDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVI 104 (235)
Q Consensus 54 -----------------------~~~~~~~il~~~g~-~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~ 104 (235)
.+.+.++++.+++. |||+.+.+.+| .++. +.....+.+. ++|+.|+++.+
T Consensus 309 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~-~~~~~g~~~~~ 387 (453)
T PRK09575 309 NIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASA-YFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHH
Confidence 45688999999995 79999999999 3334 6677788888 99999999999
Q ss_pred HHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457 105 AWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG 151 (235)
Q Consensus 105 ~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~ 151 (235)
++.++...++ .|++. ..+|+.|+++|+.+++++..++...+++++
T Consensus 388 ~~~~~~~~~v~ip~~~ll~--~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~~ 436 (453)
T PRK09575 388 LFISIGNMLIQLPFLFILP--KWLGVDGVWLAMPLSNIALSLVVAPMLWRD 436 (453)
T ss_pred HHHHHHhHHHHHHHHHHHH--HHHCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9998876554 34443 237999999999999999887766665553
No 15
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.03 E-value=1.7e-08 Score=93.79 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.++..|+++++++|..++++....-.++-+.++++
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~ 333 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQ 333 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 45788999999999999999988877666665655
Q ss_pred ----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 047457 54 ----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAW 106 (235)
Q Consensus 54 ----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~ 106 (235)
.+.+.+++..++..|+|+.+.+..+ .... +........+ .+||.||++.+++
T Consensus 334 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g-~lrg~G~t~~~~~ 412 (478)
T PRK10189 334 AERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPA-GLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhcCCCchHHHH
Confidence 4568899999999999999999999 2223 5566666777 9999999999999
Q ss_pred HHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457 107 SFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF 150 (235)
Q Consensus 107 ~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~ 150 (235)
++++...+ -|++.+..++|+.|..++..+++.+..++..+.+++
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~ 461 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS 461 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99877654 566666678999999999999998887765554443
No 16
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.02 E-value=1.8e-08 Score=92.85 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.+++.|++++.++|..++++.....+.+|+.++|+
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDI 299 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999887753
Q ss_pred ---------------------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHH
Q 047457 54 ---------------------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCM 95 (235)
Q Consensus 54 ---------------------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l 95 (235)
...++++++.++..+++ +.+| .++. +........+ .+
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~-~l 374 (488)
T TIGR02900 300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQS-IL 374 (488)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34566777777765544 3344 3333 5566667777 99
Q ss_pred hhcchhHHHHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 047457 96 QSQLKSRVIAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSV 149 (235)
Q Consensus 96 ~~~g~~~~~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~ 149 (235)
++.||++.+++.++++.++ |++++..+.+|+.|+++||.+++.+..++..++.+
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~ 432 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIK 432 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888766 66666556789999999999999988777655544
No 17
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.96 E-value=4.7e-08 Score=90.58 Aligned_cols=154 Identities=17% Similarity=0.167 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.+++.|++++.++|..++++.......+|..+.++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34678999999999999999999999999987444
Q ss_pred -----------------------HHHhhHHHHHHcCC----ChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchh
Q 047457 54 -----------------------LYVLAAAILKYLSQ----RDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKS 101 (235)
Q Consensus 54 -----------------------~~~~~~~il~~~g~----~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~ 101 (235)
.+.+++++..++.. |+|..+.+..+ .++. +..+...+.+ .+++.||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~a~g~~ 376 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLR-AFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHhccCC
Confidence 45678888888754 56777778778 3344 6677777888 99999999
Q ss_pred HHHHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhH
Q 047457 102 RVIAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAA 177 (235)
Q Consensus 102 ~~~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P 177 (235)
+.+++.+.++.++ |++++. .+|+.|+++|+.+++.+..++..++.+++.. ... ..+..+++.|..++
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~a 447 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRRLK-----GIL--PFGVLKVLAKLVIA 447 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCC--chHHHHHHHHHHHH
Confidence 9999999887766 566653 4799999999999999888776655554311 111 12334456665566
Q ss_pred HHHHH
Q 047457 178 AGVML 182 (235)
Q Consensus 178 ~~~~~ 182 (235)
+.++.
T Consensus 448 s~~m~ 452 (502)
T TIGR01695 448 SAIIG 452 (502)
T ss_pred HHHHH
Confidence 66554
No 18
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.96 E-value=3.1e-08 Score=91.64 Aligned_cols=133 Identities=15% Similarity=0.111 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457 17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH------------------------------------------- 53 (235)
Q Consensus 17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~------------------------------------------- 53 (235)
+..|+..|+++++.+|+.++++.......+-+.++++
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~ 313 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNY 313 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3456899999999999999999999999999999988
Q ss_pred ------------------------HHHhhHHHHHHcCCChHHHHHHHhH--h--HHH-HHHHHHHHHHHHHhhcchhHHH
Q 047457 54 ------------------------LYVLAAAILKYLSQRDEVAELSGYA--G--PAL-ILAFSFPLQNSCMQSQLKSRVI 104 (235)
Q Consensus 54 ------------------------~~~~~~~il~~~g~~~~l~~~a~~Y--i--~~~-~~~~~~~l~~~~l~~~g~~~~~ 104 (235)
.+++.+++..++..|+|+.+.+.+| + ... +........+ .+||.||++.+
T Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g-~lrg~g~~~~~ 392 (455)
T COG0534 314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSG-VLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcHHH
Confidence 6788999999999999999999999 2 222 5567777777 99999999999
Q ss_pred HHHHHHHHHh-----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457 105 AWSFLVAVLS-----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG 151 (235)
Q Consensus 105 ~~~~~i~~~~-----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~ 151 (235)
++.+++.... -|++.+.+ +|..|..++..+++.+..++..++++++
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987776 45555544 9999999999999998888776665543
No 19
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.68 E-value=6.7e-06 Score=76.03 Aligned_cols=173 Identities=14% Similarity=0.122 Sum_probs=128.3
Q ss_pred HHHhhHHHHHHc--CCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh--HhHHhhccCC
Q 047457 54 LYVLAAAILKYL--SQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS--RCVLVYVPDF 124 (235)
Q Consensus 54 ~~~~~~~il~~~--g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~--~~~lI~~~~l 124 (235)
.+++++++..++ |.|+|..+.+.++ .|.. +..+...+.+ .++++++-..+....++.++. -.++++....
T Consensus 74 ~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a-~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~ 152 (451)
T PF03023_consen 74 GILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSA-ILNAHRRFLIPALSPLLFNLSIILSLLLLSNSW 152 (451)
T ss_pred HHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889998887 6788999999888 5666 7777777777 999999999999988888776 2234444456
Q ss_pred C---cchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCc
Q 047457 125 G---VFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKN 201 (235)
Q Consensus 125 G---v~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~ 201 (235)
| +.+.|+|+.++..++.+..+.+.++...+.+ ..+++ ..++.|+++|...|..+..........+-..+++.+++
T Consensus 153 ~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~ 230 (451)
T PF03023_consen 153 GQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFR-PKFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE 230 (451)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-ccCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7 8899999999999998887777665422211 11111 12568899999999999887777766777788888999
Q ss_pred chhhh-HHhHHhHhHHHH-HhhhhhhcCCCC
Q 047457 202 ATLII-CGCFVMSLGWQW-APPAAGLSLPNP 230 (235)
Q Consensus 202 ~~vAa-~I~~~~i~~l~~-~~~~g~~~a~~p 230 (235)
.++++ .-+ .++..+.. .+..++++..-|
T Consensus 231 G~vs~l~YA-~~l~~lp~~i~~~~i~tv~~P 260 (451)
T PF03023_consen 231 GSVSALNYA-QRLYQLPLGIFAVSISTVVFP 260 (451)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999 888 78777655 334455554433
No 20
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.58 E-value=8e-06 Score=75.51 Aligned_cols=130 Identities=22% Similarity=0.202 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q 047457 21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------- 53 (235)
Q Consensus 21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------- 53 (235)
++.|++++...|.+++........++|..+.++
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 568899999999999999999999999999987
Q ss_pred ---------------------HHHhhHHHHHHc---C-CChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHH
Q 047457 54 ---------------------LYVLAAAILKYL---S-QRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRV 103 (235)
Q Consensus 54 ---------------------~~~~~~~il~~~---g-~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~ 103 (235)
.+.+++++.+.+ | -|+|-.+....+ .+++ ++.+...+.+ .+-++||++.
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r-~fya~~~~~~ 353 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSR-VFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHccCcHh
Confidence 566778887665 2 144444444444 6667 8889999999 9999999999
Q ss_pred HHHHHHHHHHhHhHHhh--ccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457 104 IAWSFLVAVLSRCVLVY--VPDFGVFGAAAAFDISGWVSVFGMFGYSVFG 151 (235)
Q Consensus 104 ~~~~~~i~~~~~~~lI~--~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~ 151 (235)
+++.+.++.++|.++-. ...+|+.|.|+||.++.+++++....++.|+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888544332 3468999999999999999988877666554
No 21
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.49 E-value=8.4e-06 Score=75.11 Aligned_cols=127 Identities=7% Similarity=-0.019 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------- 53 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------- 53 (235)
++..|+++|+.+|..+++........+-+.++++
T Consensus 228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 3568999999999999999999888888888888
Q ss_pred ---------------------HHHhhHHHHHHcCCChHHHHHHHhH--hHHH--HH-----HHHHHHHHHHHhhcchhHH
Q 047457 54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA--GPAL--IL-----AFSFPLQNSCMQSQLKSRV 103 (235)
Q Consensus 54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y--i~~~--~~-----~~~~~l~~~~l~~~g~~~~ 103 (235)
.+.+.+++..++..|+|+.+.+.+| +... +. .....+.+ .+||. |++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g-~lrg~-dt~~ 385 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIG-ATRAA-EMRN 385 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ccchH-HHHH
Confidence 4568889999999999999999999 2211 11 11223333 67776 7999
Q ss_pred HHHHHHHHHHhHhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457 104 IAWSFLVAVLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF 150 (235)
Q Consensus 104 ~~~~~~i~~~~~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~ 150 (235)
+++++.+...+-++. .+++|+.|..+|..+++.+..+++...+++
T Consensus 386 ~~~~~~~~~~~~~~~--~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~ 430 (441)
T PRK10367 386 SMAVAAAGFALTLLT--LPWLGNHGLWLALTVFLALRGLSLAAIWRR 430 (441)
T ss_pred HHHHHHHHHHHHHHH--HHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998875541111 235899999999999999888776655444
No 22
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.32 E-value=8.1e-05 Score=69.65 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Q 047457 21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH----------------------------------------------- 53 (235)
Q Consensus 21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~----------------------------------------------- 53 (235)
++.|++++...|++++..+.....++|+.+-+.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 688999999999999999999999999998887
Q ss_pred ---------------------HHHhhHHHHHHc---CC-Ch-HHHHHHH---hHhHHH-HHHHHHHHHHHHHhhcchhHH
Q 047457 54 ---------------------LYVLAAAILKYL---SQ-RD-EVAELSG---YAGPAL-ILAFSFPLQNSCMQSQLKSRV 103 (235)
Q Consensus 54 ---------------------~~~~~~~il~~~---g~-~~-~l~~~a~---~Yi~~~-~~~~~~~l~~~~l~~~g~~~~ 103 (235)
...+++++...+ |+ ++ |+...++ -|..++ ++++...+.. .+-+.+|+|+
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~-~FYAr~d~kt 387 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSR-VFYAREDTKT 387 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHccCCCc
Confidence 567788888665 32 22 2222222 225666 8888888999 9999999999
Q ss_pred HHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457 104 IAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG 151 (235)
Q Consensus 104 ~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~ 151 (235)
|+.+++++.++ |+.++ +-+|..|.|+||.++.|+++.++.+..+++
T Consensus 388 P~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 388 PMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred ChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888 53333 457888899999999999988866555543
No 23
>PRK10459 colanic acid exporter; Provisional
Probab=98.31 E-value=4.1e-05 Score=71.00 Aligned_cols=128 Identities=7% Similarity=-0.045 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------- 53 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------- 53 (235)
+++.|+++++++|...+++....++-+|..++|+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~ 282 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKL 282 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHH
Confidence 4678999999999999999999999999999999
Q ss_pred ---------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457 54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS 107 (235)
Q Consensus 54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~ 107 (235)
..+.+++++.++-.++ -+.+... .+.. +......... .+++.|+++.+++.
T Consensus 283 ~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~-~l~a~g~~~~~~~~ 359 (492)
T PRK10459 283 RVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGS-LLLAKGRADLSFKW 359 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCccchhHHH
Confidence 2344566554442221 1222222 2222 4455566667 89999999999988
Q ss_pred HHHHHHhHhH--HhhccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457 108 FLVAVLSRCV--LVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVF 150 (235)
Q Consensus 108 ~~i~~~~~~~--lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~ 150 (235)
+++.+++... ++....+|+.|+|+|+.+++.+.+....++..+
T Consensus 360 ~~~~~~~~i~~~~~~~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 360 NVFKTFLFIPAIVIGGQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877776222 222345799999999999998877766555534
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=98.28 E-value=3.9e-07 Score=71.55 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------------------------------------------
Q 047457 32 PAPFSLLAAYCPNILLQAFDCH---------------------------------------------------------- 53 (235)
Q Consensus 32 P~~~~~l~~~~~~~vD~~~vG~---------------------------------------------------------- 53 (235)
|+.++++++.+.+.+|+.++||
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 8999999999999999999999
Q ss_pred ---------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HhHhH
Q 047457 54 ---------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAV-LSRCV 117 (235)
Q Consensus 54 ---------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~-~~~~~ 117 (235)
.+.+.++++.+++.|+|+.+.+.+| .++. +......+++ ++|+.|+++.+++.+.+.. +++..
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSG-ILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCC-CCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHH-HHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999999 4455 7788888888 9999999999999999988 44433
No 25
>PRK15099 O-antigen translocase; Provisional
Probab=98.08 E-value=0.00026 Score=64.30 Aligned_cols=128 Identities=10% Similarity=-0.006 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
.++..|+++++++|..++++.....+.+|..++|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~~~~~~~ 289 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRLTEKRDI 289 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 35678999999999999999999999999999985
Q ss_pred ---------------------HHHhhHHHHHHcCCCh--HHHHHHHhHhHHH-HHHHHHHHHHHHHhhcchhHHHHHHHH
Q 047457 54 ---------------------LYVLAAAILKYLSQRD--EVAELSGYAGPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFL 109 (235)
Q Consensus 54 ---------------------~~~~~~~il~~~g~~~--~l~~~a~~Yi~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~ 109 (235)
.+++++++..++..|+ +..+..+...++. .......+.. ..-+.++.+......+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~~~~~~~~l~~~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~ 368 (416)
T PRK15099 290 TREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTAMRDLFAWQLVGDVLKVGAYVFGY-LVIAKASLRFYILAEV 368 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 2367788877776554 2333322222222 2222222223 3345556665555555
Q ss_pred HHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 047457 110 VAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSV 149 (235)
Q Consensus 110 i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~ 149 (235)
...++ +++++. .+|..|+++|+.+++.+..+.......
T Consensus 369 ~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 369 SQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444 556554 479999999999999998876554333
No 26
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.05 E-value=0.0006 Score=62.91 Aligned_cols=129 Identities=21% Similarity=0.164 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH--------------------------------------------- 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~--------------------------------------------- 53 (235)
..+..|++++.++|..++.+...+.+-+|+.++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 46899999999999999999999999999999998
Q ss_pred -----------------------HHHhhHHHHHHc-CCChHHHHHHHhH-hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457 54 -----------------------LYVLAAAILKYL-SQRDEVAELSGYA-GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS 107 (235)
Q Consensus 54 -----------------------~~~~~~~il~~~-g~~~~l~~~a~~Y-i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~ 107 (235)
..+++++++..+ |.+.+-.....+. .++. +......... .+++.|+.+..++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~ 366 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSS-LLQALGKQRLLLLI 366 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHH-HHHHcCcchhhHHH
Confidence 445666666654 5443323333333 4444 6666666777 99999999999999
Q ss_pred HHHHHHhHhHHhh--ccCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457 108 FLVAVLSRCVLVY--VPDFGVFGAAAAFDISGWVSVFGMFGYSVF 150 (235)
Q Consensus 108 ~~i~~~~~~~lI~--~~~lGv~GaAiAt~is~~~~~~~~~~~~~~ 150 (235)
+.++.++|.++.+ .+..|..|+++++ .+ .........+..+
T Consensus 367 ~~~~~i~~~~l~~~li~~~g~~g~~~a~-~~-~~~~~~~~~~~~~ 409 (480)
T COG2244 367 SLISALLNLILNLLLIPRFGLIGAAIAT-AS-VIALALLLFYILR 409 (480)
T ss_pred HHHHHHHHHHHHhHHHHhhhhhhHHHHH-HH-HHHHHHHHHHHHH
Confidence 9988777443333 2457889999999 44 4444443334333
No 27
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.96 E-value=0.0034 Score=52.63 Aligned_cols=140 Identities=14% Similarity=0.029 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHhHh----HHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 047457 85 AFSFPLQNSCMQSQLKSRVIAWSFLVAVLSRC----VLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGF 160 (235)
Q Consensus 85 ~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~~----~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~ 160 (235)
........ ++++.++.+.....+.+..+... ++++ .+.++.+..++..++..+..++...+.+++. +.++
T Consensus 123 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 196 (273)
T PF01943_consen 123 SLSSVFSG-LLQGLQRFKYIAISNIISSLLSLLLILLLLF-LGSSLWGFLLGLVISSLVSLIISLFYLRRKL-RPRF--- 196 (273)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccc---
Confidence 44455556 88888888877777776666522 2222 3445888999999998888777666655432 1111
Q ss_pred chHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-cCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCCC
Q 047457 161 SMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTE-YLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNPN 231 (235)
Q Consensus 161 ~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~-~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p~ 231 (235)
.....+..|+++|.+.|..+..........+-..+.+ ..|+++++. +++ .++......++..+.+..-|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a-~~l~~~~~~~~~~~~~~~~P~ 268 (273)
T PF01943_consen 197 SFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVA-YRLASAISFLLSSISTVLFPR 268 (273)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1122578889999999999988877766666555555 457888888 999 999999999988888766653
No 28
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.81 E-value=0.0017 Score=49.97 Aligned_cols=66 Identities=29% Similarity=0.369 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh----HhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Q 047457 83 ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS----RCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFG 151 (235)
Q Consensus 83 ~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~ 151 (235)
+..+.....+ .+++.||++..+..+.++.++ |++++ +.+|..|+|+||.+++.+......++.+|+
T Consensus 11 ~~~l~~~~~~-il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 11 FMGLSQPLGS-ILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHHH-HHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777 999999999999999988888 55554 468999999999999999877766665553
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=97.43 E-value=0.07 Score=50.28 Aligned_cols=157 Identities=14% Similarity=0.049 Sum_probs=103.1
Q ss_pred HHhhHHHHHHc-CC--ChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHh----HhHHhhcc
Q 047457 55 YVLAAAILKYL-SQ--RDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLS----RCVLVYVP 122 (235)
Q Consensus 55 ~~~~~~il~~~-g~--~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~----~~~lI~~~ 122 (235)
.++++.+.+.+ +. |++....+... .|.+ +..+...... .+++.++-..+.+.-..-|+. ...+-.+.
T Consensus 109 ~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~a-iLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~ 187 (518)
T COG0728 109 ILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGA-ILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYF 187 (518)
T ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCeechhhhhHHHHHHHHHHHHHHhccch
Confidence 35666777343 33 23333334433 5666 6666666666 999999998888877766655 12121122
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhccC--CCCCCCCchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 047457 123 DFGVFGAAAAFDISGWVSVFGMFGYSVFGGC--PLTRNGFSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLK 200 (235)
Q Consensus 123 ~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G 200 (235)
+.-..+.+|++.++-+++.++.+...++... +.+|.. + ..+.|++++.-.|..+..........+-+.+++.+.
T Consensus 188 ~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~-~---~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~ 263 (518)
T COG0728 188 DPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGF-K---DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLA 263 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCC-C---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2236688999999999999988777766522 222211 1 257888999999999888777777778888999988
Q ss_pred cchhhh-HHhHHhHhHHH
Q 047457 201 NATLII-CGCFVMSLGWQ 217 (235)
Q Consensus 201 ~~~vAa-~I~~~~i~~l~ 217 (235)
+.+++. .-+ ..+..+-
T Consensus 264 ~Gsis~l~YA-~rl~qlP 280 (518)
T COG0728 264 EGSVSWLYYA-DRLYQLP 280 (518)
T ss_pred cccHHHHHHH-HHHHHhh
Confidence 877777 666 5555443
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.32 E-value=0.029 Score=46.55 Aligned_cols=139 Identities=19% Similarity=0.094 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhH---hHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047457 83 ILAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSR---CVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNG 159 (235)
Q Consensus 83 ~~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~---~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~ 159 (235)
........+. .+++.++.+...........+. .++....+.++.+..++..+++.+..+.... ..+++.+.. +
T Consensus 103 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~- 178 (251)
T PF13440_consen 103 FSALSQLFRS-ILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWSILLAFIISALLALLISFY-LLRRKLRLS-F- 178 (251)
T ss_pred HHHHHHHHHH-HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhccccCCC-c-
Confidence 4466667777 9999999998888877666652 2222223447888888888888776555332 222221111 1
Q ss_pred CchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCcchhhh-HHhHHhHhHHHH-HhhhhhhcCCCCC
Q 047457 160 FSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEY-LKNATLII-CGCFVMSLGWQW-APPAAGLSLPNPN 231 (235)
Q Consensus 160 ~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~-~G~~~vAa-~I~~~~i~~l~~-~~~~g~~~a~~p~ 231 (235)
+ .+..| .+|.+.|..+.....+....+-..+++. +|.++++. +++ .++..... .+..++++..-|.
T Consensus 179 -~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a-~~l~~~~~~~~~~~i~~~~~p~ 247 (251)
T PF13440_consen 179 -K---FSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVA-QRLASLPASLLSSAISSVFFPK 247 (251)
T ss_pred -h---hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12223 6888999999888777777777777777 88888888 888 88888777 7888877665553
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=97.14 E-value=0.088 Score=48.78 Aligned_cols=125 Identities=11% Similarity=-0.035 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHhH----hHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047457 84 LAFSFPLQNSCMQSQLKSRVIAWSFLVAVLSR----CVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNG 159 (235)
Q Consensus 84 ~~~~~~l~~~~l~~~g~~~~~~~~~~i~~~~~----~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~ 159 (235)
..+....+. .++...+.+.......+..+.. ..+. ..+.|+.+..+++.+++.+..+... +..+++.+.+
T Consensus 125 ~~~~~~~~~-~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~-~~~~g~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~--- 198 (492)
T PRK10459 125 IPIGQQFRA-LLQKELEFNKLAKIEISAVVAGFTFAVVSA-FFWPGALAAILGYLVNSSVRTLLFG-YFGRKIYRPA--- 198 (492)
T ss_pred HHHhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHHHHHHHHHHHHHHHH-HHhcccCCcc---
Confidence 344445566 7888888877766666665552 2222 2578899999999998877665432 2222222111
Q ss_pred CchHhhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-HHhHHhHhHH
Q 047457 160 FSMRAFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT-EYLKNATLII-CGCFVMSLGW 216 (235)
Q Consensus 160 ~~~~~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~-~~~G~~~vAa-~I~~~~i~~l 216 (235)
++ ...+.+|++++.+.|.............+-..+. ..+|+++++. +.+ .++..+
T Consensus 199 ~~-~~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A-~~l~~~ 255 (492)
T PRK10459 199 LH-FSLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLA-YNVATV 255 (492)
T ss_pred ce-ecHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHH-HHHHHH
Confidence 11 1235678999999999988776655555555554 4457888888 878 777655
No 32
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=96.44 E-value=0.015 Score=50.94 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457 19 IWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH 53 (235)
Q Consensus 19 ~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~ 53 (235)
.+++.|+++++++|..+.+++......+|..++++
T Consensus 211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~ 245 (342)
T TIGR00797 211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVAR 245 (342)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998888
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=95.85 E-value=1.5 Score=40.40 Aligned_cols=142 Identities=14% Similarity=0.025 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHH-HHhHhHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchH
Q 047457 85 AFSFPLQNSCMQSQLKSRVIAWSFLVA-VLSRCVLVYVPDFGVFGAAAAFDISGWVSVFGMFGYSVFGGCPLTRNGFSMR 163 (235)
Q Consensus 85 ~~~~~l~~~~l~~~g~~~~~~~~~~i~-~~~~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (235)
......+. ++|+.++.+...+..... ..+.-.+.... ....++.++..++..........+..+++....+..++ .
T Consensus 131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 207 (480)
T COG2244 131 PLSSVLRG-LFQGFGRFGPLALSIVSSIFLLAAVFALLF-AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILR-F 207 (480)
T ss_pred HHHHHHHH-HHHHHhhcccchhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccC-c
Confidence 34444555 777777776666552222 11111111111 23455566666666665555444443221111111111 1
Q ss_pred hhhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 164 AFSGIWDFVKLSAAAGVMLCLENRYCRILIMMT-EYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 164 ~~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~-~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
..+.+++.++.|+|.............+=+.+. ..+|++.++. +.. .++......+...++.+.-|
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a-~~i~~~~~~~~~~l~~~l~P 275 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAA-QRLVSLLLIVASALNRVLFP 275 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccc-cHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999998877666655544444 4557777777 755 66667777666666655444
No 34
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=95.76 E-value=0.0057 Score=47.63 Aligned_cols=53 Identities=9% Similarity=-0.132 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 177 AAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 177 P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
|..+++..+...+.+.+.+++++|++++++ ++. .++..+.+++..|++.|.+|
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~-~~~~~~~~~~~~g~~~a~~~ 54 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIA-SSIFSILFMLIFGLATALQI 54 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHhhhcccccccccc
Confidence 888999999999999999999999999999 999 99999999999999987654
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=83.73 E-value=3 Score=39.01 Aligned_cols=66 Identities=8% Similarity=-0.159 Sum_probs=54.8
Q ss_pred hhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHh-HHHHHhhhhhhcCCCCC
Q 047457 165 FSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSL-GWQWAPPAAGLSLPNPN 231 (235)
Q Consensus 165 ~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~-~l~~~~~~g~~~a~~p~ 231 (235)
.+..|++.+++.|..+....+.....+-+...+++|+..+|+ ++. .+.. ...+.+..|++.+..|.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla-~s~~n~~~~s~~~gl~~aletl 91 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLA-NSFANITGVSILLGLQLALDTL 91 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHH-HHhhcccchHHhhccchhhhcc
Confidence 467899999999999998888888888889999999999999 888 5444 45778888888877654
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=75.65 E-value=63 Score=30.96 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=54.0
Q ss_pred hhHHHHHHcC----CChHHHHHHHhH---hHHH-HHHHHHHHHHHHHhhcchhH------HHHHHHHHHHHh-HhHHhhc
Q 047457 57 LAAAILKYLS----QRDEVAELSGYA---GPAL-ILAFSFPLQNSCMQSQLKSR------VIAWSFLVAVLS-RCVLVYV 121 (235)
Q Consensus 57 ~~~~il~~~g----~~~~l~~~a~~Y---i~~~-~~~~~~~l~~~~l~~~g~~~------~~~~~~~i~~~~-~~~lI~~ 121 (235)
.++.++.+++ .+++..+.=+.| +|.+ .+.+.++ |+++....+ ..|.+.-+..+. +|+|+..
T Consensus 366 ~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~Ea----F~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~ 441 (549)
T PF04506_consen 366 YSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEA----FVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW 441 (549)
T ss_pred hHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHH----HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666653 245555555555 7777 5555444 455544332 222222222222 8999887
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 047457 122 PDFGVFGAAAAFDISGWVSVFGMFGYSVF 150 (235)
Q Consensus 122 ~~lGv~GaAiAt~is~~~~~~~~~~~~~~ 150 (235)
++|..|--+|.++...+..+....++.+
T Consensus 442 -~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 442 -GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred -cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888887776666654
No 37
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=70.97 E-value=9.5 Score=31.44 Aligned_cols=34 Identities=12% Similarity=-0.109 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH 53 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~ 53 (235)
+++.|++++.++|..++.+...+.+-+|..++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~ 234 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGY 234 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7899999999999999999999999999999987
No 38
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=59.96 E-value=64 Score=26.96 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH 53 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~ 53 (235)
.+..+.+.|...|+..+.+.....+++....+++
T Consensus 67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~ 100 (215)
T PF04172_consen 67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLAR 100 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999999999999
No 39
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=58.58 E-value=1.4e+02 Score=26.79 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=30.0
Q ss_pred hhcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCc
Q 047457 165 FSGIWDFVKLSAAAGVMLCLENRYCRILIMMTEY-LKN 201 (235)
Q Consensus 165 ~~~~~~~l~lg~P~~~~~~~e~~~~~i~~~l~~~-~G~ 201 (235)
...++++++...|-+........+=-+.+.+.++ +|.
T Consensus 231 ~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~g 268 (345)
T PF07260_consen 231 SATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSG 268 (345)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3568899999999999988888887778888877 554
No 40
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=49.38 E-value=1.3e+02 Score=25.39 Aligned_cols=34 Identities=3% Similarity=-0.093 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH 53 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~ 53 (235)
.+..+.+-|...|+..+.+.....+++....+++
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~ 110 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLAL 110 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888899999999999999999999999
No 41
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=47.55 E-value=1.4e+02 Score=25.35 Aligned_cols=33 Identities=3% Similarity=-0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457 21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH 53 (235)
Q Consensus 21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~ 53 (235)
+..+.+-|...|+.++.+.....+++....+++
T Consensus 84 ~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~ 116 (232)
T PRK04288 84 KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAK 116 (232)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999999999999999998
No 42
>COG3162 Predicted membrane protein [Function unknown]
Probab=47.22 E-value=81 Score=23.04 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=25.1
Q ss_pred CchhhhhHhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047457 7 DYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYC 42 (235)
Q Consensus 7 ~~~~~~~~~~~~~~~~~k~ll~lalP~~~~~l~~~~ 42 (235)
|-.+|+.+--|+..+..|+--++++|+.+-++....
T Consensus 3 ~~iy~~i~a~p~f~eLv~kr~~Fa~~ltl~flv~Y~ 38 (102)
T COG3162 3 DTIYQRIAANPRFRELVRKRRRFAVPLTLIFLVVYF 38 (102)
T ss_pred cccccccccCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445559999999999999988876554
No 43
>PRK10711 hypothetical protein; Provisional
Probab=42.52 E-value=2.1e+02 Score=24.21 Aligned_cols=33 Identities=0% Similarity=-0.214 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457 21 IESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH 53 (235)
Q Consensus 21 ~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~ 53 (235)
+..+.+-+...|+..+.+.....+++....+++
T Consensus 79 ~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~ 111 (231)
T PRK10711 79 EQLHQIRARWKSIISICFIGSVVAMVTGTAVAL 111 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788889999999999999999999998
No 44
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=32.34 E-value=3.1e+02 Score=23.19 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAA 60 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~~~~~~~~ 60 (235)
.+..+.+-|...|+..+.+.....+++....+++.+=..+.
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~ 120 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE 120 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34455677778899999999999999999999984433333
No 45
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=28.90 E-value=1.2e+02 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=23.4
Q ss_pred hhhhHhhHHHHHHHHHHHHHHhHHHHHHH
Q 047457 10 EVTNQIRDKIWIESKKVWCIAGPAPFSLL 38 (235)
Q Consensus 10 ~~~~~~~~~~~~~~k~ll~lalP~~~~~l 38 (235)
|+-.+-++..++..|+.+++++|..+-.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~vPA~lY~~ 29 (244)
T PF04142_consen 1 HLKRSLKDEVWKSPKDTLKLAVPALLYAI 29 (244)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999988533
No 46
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.12 E-value=4.3e+02 Score=23.46 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=64.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHhH-h-HHH-HHHHHHHHHHHHHhhc
Q 047457 22 ESKKVWCIAGPAPFSLLAAYCPNILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYA-G-PAL-ILAFSFPLQNSCMQSQ 98 (235)
Q Consensus 22 ~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~~~~~~~~il~~~g~~~~l~~~a~~Y-i-~~~-~~~~~~~l~~~~l~~~ 98 (235)
..+++.+.-.|....-..-.-.+..|.. --+.+|+...++-++|....+..+ . ... .......+.+ ++
T Consensus 177 ~~~rv~~~~~~~~~li~~L~~~G~~d~~-----~~~~~pl~~~L~lp~eav~v~~~~~~~~~~g~~~a~~li~~----Gi 247 (311)
T COG3366 177 VFKRVIPVVVPATVLIFFLIELGLFDYV-----EEFLHPLTNYLPLPPEAVTVVLTNLANIIAGIVLAAGLLDS----GI 247 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-----HHHhhhHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhc----CC
Confidence 3344444444544443334444455532 236788999999888877665555 1 111 1111111222 22
Q ss_pred chhHHHHHHHHHHHHh------------HhHHhhccCCCcchHHHHHHHHHHHHHHHHH
Q 047457 99 LKSRVIAWSFLVAVLS------------RCVLVYVPDFGVFGAAAAFDISGWVSVFGMF 145 (235)
Q Consensus 99 g~~~~~~~~~~i~~~~------------~~~lI~~~~lGv~GaAiAt~is~~~~~~~~~ 145 (235)
=..+..+...++++++ -|+=+||.+.|+..+++.|.++-.+...+..
T Consensus 248 Ls~~eali~LliG~ils~~~~~lk~slP~~vsifG~k~Glk~~~vn~~v~i~~~i~~v~ 306 (311)
T COG3366 248 LSEKEALIALLLGGILSLPIIYLKHSLPTYVSIFGRKLGLKIVAVNTAVSILARILIVL 306 (311)
T ss_pred CCHHHHHHHHHHHhHHHhhHHHHHhhcccceeeeccccchHHHHHHHHHHHHHHHHHHH
Confidence 2444555555555555 3445666779999999999888877655443
No 47
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=24.84 E-value=2.7e+02 Score=20.10 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhHHHHHHcCCChHHHHHHHhH
Q 047457 17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAF--------------DCHLYVLAAAILKYLSQRDEVAELSGYA 78 (235)
Q Consensus 17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~--------------vG~~~~~~~~il~~~g~~~~l~~~a~~Y 78 (235)
|..|...-..++--.|-+.+.++..++...=..+ .|-+-++..+.+.++|-+++....+..+
T Consensus 5 P~~W~~ll~wl~~~~~~~~~a~lA~~mA~LR~~Y~g~~~~r~llea~lCg~lal~~~~~L~~~gl~~~~a~~~g~~ 80 (100)
T PF05106_consen 5 PDFWAQLLAWLQSHWPQIYGALLAFVMALLRGAYGGGSWRRRLLEALLCGLLALFARSLLEYFGLPQSLAVFIGGF 80 (100)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhheee
Confidence 5567777777787778888888877777665555 3335577889999999998877766555
No 48
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=24.19 E-value=1.3e+02 Score=24.37 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=26.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047457 26 VWCIAGPAPFSLLAAYCPNILLQAFDCH 53 (235)
Q Consensus 26 ll~lalP~~~~~l~~~~~~~vD~~~vG~ 53 (235)
.++.+.|..++.+.....+-+|.++++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ 212 (251)
T PF13440_consen 185 LLKYGLPFSLSSLLSWLLSQIDRLLIGY 212 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999876
No 49
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=21.58 E-value=3.4e+02 Score=19.98 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHhH
Q 047457 44 NILLQAFDCHLYVLAAAILKYLSQRDEVAELSGYA 78 (235)
Q Consensus 44 ~~vD~~~vG~~~~~~~~il~~~g~~~~l~~~a~~Y 78 (235)
.++|..+.|-+-++....++++|.+++....+..+
T Consensus 48 ~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~ 82 (107)
T TIGR01594 48 KLIDALMCAAIALVAASALDFLGLPTSLSPFLGGM 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhh
Confidence 34455555555577889999999998877765555
Done!