Query 047457
Match_columns 235
No_of_seqs 112 out of 1270
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 8.1E-23 2.8E-27 184.4 15.7 212 17-230 5-299 (460)
2 3mkt_A Multi antimicrobial ext 99.1 1.8E-10 6.1E-15 103.4 8.6 126 20-146 234-441 (460)
3 2jwa_A Receptor tyrosine-prote 19.3 1.4E+02 0.0049 17.5 3.5 8 144-151 31-38 (44)
4 2k1k_A Ephrin type-A receptor 17.1 1.2E+02 0.0042 17.0 2.8 6 127-132 9-14 (38)
5 2inw_A Putative structural pro 7.2 1.7E+02 0.0059 21.2 1.4 38 5-42 40-77 (133)
6 3ech_C 25-MER fragment of prot 6.9 3E+02 0.01 13.6 1.9 17 6-22 2-19 (25)
7 2ea9_A JW2626, hypothetical pr 5.9 1.3E+02 0.0046 21.0 0.2 38 5-42 26-63 (105)
8 4g6v_B CDII; tRNAse, toxin, im 3.9 3.2E+02 0.011 18.8 1.0 20 1-20 56-75 (111)
9 3r8s_Z 50S ribosomal protein L 3.6 3.6E+02 0.012 16.5 1.0 14 8-21 36-49 (58)
10 2l1n_A Uncharacterized protein 3.6 1.5E+02 0.005 21.3 -1.0 26 3-28 56-84 (120)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.89 E-value=8.1e-23 Score=184.41 Aligned_cols=212 Identities=11% Similarity=0.083 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Q 047457 17 DKIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH------------------------------------------- 53 (235)
Q Consensus 17 ~~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~------------------------------------------- 53 (235)
+..+++.|+++++++|.+++++++.+++.+|+.++||
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 3456899999999999999999999999999999999
Q ss_pred -----------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHH
Q 047457 54 -----------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIA 105 (235)
Q Consensus 54 -----------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~ 105 (235)
.+.+.++++.+++.|+|+.+.+.+| .++. +..+...++. ++|++|+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 163 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRS-FTDGMSLTKPAM 163 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTT-TTCTTSCCTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHH
Confidence 3456678888899999999999999 5566 7778888888 999999999999
Q ss_pred HHHHHHHHh----HhHHhhc-c---CCCcchHHHHHHHHHHHHHHHHHHHHHhcc-CCC--CCCCCchHhhhcHHHHHHH
Q 047457 106 WSFLVAVLS----RCVLVYV-P---DFGVFGAAAAFDISGWVSVFGMFGYSVFGG-CPL--TRNGFSMRAFSGIWDFVKL 174 (235)
Q Consensus 106 ~~~~i~~~~----~~~lI~~-~---~lGv~GaAiAt~is~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~l 174 (235)
+.++++.++ |++|+++ + ++|+.|+++||.+++++..++...++++++ .++ .++.+.+...+.+|+++|+
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 999888776 8889876 4 799999999999999999888777776652 211 1222223345788999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCCcchhhh-HHhHHhHhHHHHHhhhhhhcCCCC
Q 047457 175 SAAAGVMLCLENRYCRILIMMTEYLKNATLII-CGCFVMSLGWQWAPPAAGLSLPNP 230 (235)
Q Consensus 175 g~P~~~~~~~e~~~~~i~~~l~~~~G~~~vAa-~I~~~~i~~l~~~~~~g~~~a~~p 230 (235)
|+|..++...+...+.+.+.+++++|++++++ +++ .++..+.++++.|++++.+|
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~-~~i~~~~~~~~~~~~~a~~p 299 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVA-LNFSSLVFMFPMSIGAAVSI 299 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999 99999999999999999877
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.10 E-value=1.8e-10 Score=103.42 Aligned_cols=126 Identities=10% Similarity=0.018 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------
Q 047457 20 WIESKKVWCIAGPAPFSLLAAYCPNILLQAFDCH---------------------------------------------- 53 (235)
Q Consensus 20 ~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~vG~---------------------------------------------- 53 (235)
++..|+++++++|..+++++......+|..++|+
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~ 313 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGA 313 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4677899999999999999999999999999888
Q ss_pred ---------------------HHHhhHHHHHHcCCChHHHHHHHhH----hHHH-HHHHHHHHHHHHHhhcchhHHHHHH
Q 047457 54 ---------------------LYVLAAAILKYLSQRDEVAELSGYA----GPAL-ILAFSFPLQNSCMQSQLKSRVIAWS 107 (235)
Q Consensus 54 ---------------------~~~~~~~il~~~g~~~~l~~~a~~Y----i~~~-~~~~~~~l~~~~l~~~g~~~~~~~~ 107 (235)
.+++.+++..++..|+|+.+.+.++ .++. +..+.....+ .+++.||++.+++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 314 AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAG-SLRGYKDMTAIFHR 392 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchHHHHHH
Confidence 5678899999999999998888888 2333 5566777777 99999999999999
Q ss_pred HHHHH-Hh----HhHHhhc----cC-CCcchHHHHHHHHHHHHHHHHHH
Q 047457 108 FLVAV-LS----RCVLVYV----PD-FGVFGAAAAFDISGWVSVFGMFG 146 (235)
Q Consensus 108 ~~i~~-~~----~~~lI~~----~~-lGv~GaAiAt~is~~~~~~~~~~ 146 (235)
++++. ++ ++++++. ++ +|+.|+++|+.+++.+..++..+
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~ 441 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ 441 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHH
Confidence 98877 43 7888876 67 99999999999999887666543
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.35 E-value=1.4e+02 Score=17.47 Aligned_cols=8 Identities=0% Similarity=-0.654 Sum_probs=3.5
Q ss_pred HHHHHHhc
Q 047457 144 MFGYSVFG 151 (235)
Q Consensus 144 ~~~~~~~~ 151 (235)
..+|++|+
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 34445443
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=17.08 E-value=1.2e+02 Score=17.04 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.3
Q ss_pred chHHHH
Q 047457 127 FGAAAA 132 (235)
Q Consensus 127 ~GaAiA 132 (235)
.|-++|
T Consensus 9 s~GaIA 14 (38)
T 2k1k_A 9 TGGEIV 14 (38)
T ss_dssp CHHHHH
T ss_pred CCCcee
Confidence 333443
No 5
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=7.23 E-value=1.7e+02 Score=21.20 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=29.6
Q ss_pred CCCchhhhhHhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047457 5 RYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYC 42 (235)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~k~ll~lalP~~~~~l~~~~ 42 (235)
+-.||.||+-++.....+-..-+.-|.|.++.++=..+
T Consensus 40 rLHyLaDRAgi~G~Fs~~~~~~Ld~aFP~~ikQlE~mL 77 (133)
T 2inw_A 40 RLHYLADRAGIRGRFSDVDAYHLDQAFPLLMKQLELML 77 (133)
T ss_dssp EEECCGGGEEEESCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeccCCeeEecCHHHHHHHHHHhHHHHHHHHHHh
Confidence 45789999988866666666678899999999886554
No 6
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=6.93 E-value=3e+02 Score=13.59 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=9.2
Q ss_pred CCchhhhhHhhHH-HHHH
Q 047457 6 YDYTEVTNQIRDK-IWIE 22 (235)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~ 22 (235)
.||+|+-.+-+++ .|..
T Consensus 2 r~~te~lrr~arrnawdl 19 (25)
T 3ech_C 2 RDYTEQLRRAARRNAWDL 19 (26)
T ss_dssp CCHHHHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHHhHHHH
Confidence 4677765555433 4443
No 7
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=5.85 E-value=1.3e+02 Score=20.95 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=28.2
Q ss_pred CCCchhhhhHhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047457 5 RYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYC 42 (235)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~k~ll~lalP~~~~~l~~~~ 42 (235)
+-.||.||+-++....++-..-+.-|.|.++.++=..+
T Consensus 26 ~LhyLaDRAgi~G~Fs~~~~~~Ld~aFP~~ikqlE~mL 63 (105)
T 2ea9_A 26 QLHYLADRASITGKFSDAECPKLDVVFPHFISQIESML 63 (105)
T ss_dssp EEECCGGGEEEESCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCeeEecCHHHHHHHHHHhHHHHHHHHHHh
Confidence 44688899888855555555678889999998876554
No 8
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=3.91 E-value=3.2e+02 Score=18.84 Aligned_cols=20 Identities=0% Similarity=0.117 Sum_probs=14.7
Q ss_pred CCCCCCCchhhhhHhhHHHH
Q 047457 1 MNPKRYDYTEVTNQIRDKIW 20 (235)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (235)
||||-|=|..+++.+.....
T Consensus 56 l~~eS~F~Isv~DKt~~~~~ 75 (111)
T 4g6v_B 56 LVAESFFLVSLNDKNSADLI 75 (111)
T ss_dssp CCCSEEEEEEECCGGGGGGH
T ss_pred CCccceEEEEEcCCCcchhh
Confidence 68888888888877764433
No 9
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Probab=3.63 E-value=3.6e+02 Score=16.55 Aligned_cols=14 Identities=36% Similarity=0.150 Sum_probs=0.0
Q ss_pred chhhhhHhhHHHHH
Q 047457 8 YTEVTNQIRDKIWI 21 (235)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (235)
+.+|||++|.++..
T Consensus 36 ~~~dtp~irGMI~k 49 (58)
T 3r8s_Z 36 EREDTPAIRGMINA 49 (58)
T ss_dssp EEECCHHHHHHHHH
T ss_pred EecCCHHHHHHHHH
No 10
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=3.63 E-value=1.5e+02 Score=21.32 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCCCCchhhhhHhh---HHHHHHHHHHHH
Q 047457 3 PKRYDYTEVTNQIR---DKIWIESKKVWC 28 (235)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~~~k~ll~ 28 (235)
||.-|..+.||-+- +++.++.|.++|
T Consensus 56 PepP~~I~~Rpatv~LTRSIP~e~KQlLK 84 (120)
T 2l1n_A 56 PEPPDFIASRPATVKLTRSIPAPYKQLLK 84 (120)
T ss_dssp SSCCCTTTCCHHHHHHHHTSCGGGTTHHH
T ss_pred CCCcchhhcCCcceeeeccCCHHHHHHHH
Done!