Query 047457
Match_columns 235
No_of_seqs 112 out of 1270
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 19:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047457.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047457hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba3 a.60.2.4 (A:410-464) T 19.3 26 0.0019 19.3 1.6 21 58-78 15-35 (55)
2 d2inwa1 d.110.8.1 (A:4-120) Hy 8.2 64 0.0047 21.3 1.2 38 5-42 37-74 (117)
3 d2ea9a1 d.110.8.1 (A:8-110) Hy 7.1 49 0.0036 21.4 0.2 38 5-42 26-63 (103)
4 d2cqea2 g.66.1.1 (A:429-457) Z 4.1 1.2E+02 0.0087 14.7 0.5 9 3-11 20-28 (29)
5 d2zjrw1 d.59.1.1 (W:1-55) Prok 3.2 2.2E+02 0.016 15.9 1.1 15 7-21 32-46 (55)
6 d1mv8a2 c.2.1.6 (A:1-202) GDP- 3.0 2.4E+02 0.018 19.4 1.6 16 122-137 6-21 (202)
7 d2np5a2 a.121.1.1 (A:78-195) T 2.9 5.9E+02 0.043 15.4 3.6 34 18-51 52-85 (118)
8 d1xp8a2 d.48.1.1 (A:283-341) R 2.9 3.3E+02 0.024 15.3 1.8 22 5-26 36-57 (59)
9 d2gycx1 d.59.1.1 (X:3-58) Prok 2.9 2E+02 0.014 16.1 0.7 14 8-21 34-47 (56)
10 d2jfga1 c.5.1.1 (A:1-93) UDP-N 2.6 2.5E+02 0.018 16.6 1.1 19 119-137 8-26 (93)
No 1
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=19.34 E-value=26 Score=19.32 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=19.0
Q ss_pred hHHHHHHcCCChHHHHHHHhH
Q 047457 58 AAAILKYLSQRDEVAELSGYA 78 (235)
Q Consensus 58 ~~~il~~~g~~~~l~~~a~~Y 78 (235)
++.+++.+|.++.+...+++|
T Consensus 15 aerllrafgnpervkqlaref 35 (55)
T d2csba3 15 AERLLRAFGNPERVKQLAREF 35 (55)
T ss_dssp HHHHHHHHSSHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 578899999999999999998
No 2
>d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella flexneri [TaxId: 623]}
Probab=8.16 E-value=64 Score=21.30 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=29.3
Q ss_pred CCCchhhhhHhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047457 5 RYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYC 42 (235)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~k~ll~lalP~~~~~l~~~~ 42 (235)
+-.||.||+-+......+-..-+.-+.|.++.++-..+
T Consensus 37 rLh~LaDRagi~G~Fs~~~~~~Ld~aFP~~ikqlE~ml 74 (117)
T d2inwa1 37 RLHYLADRAGIRGRFSDVDAYHLDQAFPLLMKQLELML 74 (117)
T ss_dssp EEECCGGGEEEESCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeccCCceeecCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688888888866666667778899999999886654
No 3
>d2ea9a1 d.110.8.1 (A:8-110) Hypothetical protein YfjZ {Escherichia coli [TaxId: 562]}
Probab=7.07 E-value=49 Score=21.44 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=28.5
Q ss_pred CCCchhhhhHhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 047457 5 RYDYTEVTNQIRDKIWIESKKVWCIAGPAPFSLLAAYC 42 (235)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~k~ll~lalP~~~~~l~~~~ 42 (235)
+-.||.||+-+.....++-..-+.-+.|.++.++-..+
T Consensus 26 rLh~LaDRagi~G~Fs~~~~~~Ld~aFP~~i~qle~ml 63 (103)
T d2ea9a1 26 QLHYLADRASITGKFSDAECPKLDVVFPHFISQIESML 63 (103)
T ss_dssp EEECCGGGEEEESCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhCCceeecCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688888888766555666678889999999886554
No 4
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.11 E-value=1.2e+02 Score=14.70 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=6.6
Q ss_pred CCCCCchhh
Q 047457 3 PKRYDYTEV 11 (235)
Q Consensus 3 ~~~~~~~~~ 11 (235)
.|-|+|+|+
T Consensus 20 genC~ymH~ 28 (29)
T d2cqea2 20 AENCPYMHG 28 (29)
T ss_dssp STTCSSBSS
T ss_pred CcCcccccC
Confidence 467888885
No 5
>d2zjrw1 d.59.1.1 (W:1-55) Prokaryotic ribosomal protein L30 {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.15 E-value=2.2e+02 Score=15.88 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=10.8
Q ss_pred CchhhhhHhhHHHHH
Q 047457 7 DYTEVTNQIRDKIWI 21 (235)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (235)
-+.+|||++|.+++.
T Consensus 32 v~~~dtp~irGmi~k 46 (55)
T d2zjrw1 32 REVSDTPAVRGMVKT 46 (55)
T ss_dssp EECCCSHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHh
Confidence 356788998877653
No 6
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.01 E-value=2.4e+02 Score=19.41 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.5
Q ss_pred cCCCcchHHHHHHHHH
Q 047457 122 PDFGVFGAAAAFDISG 137 (235)
Q Consensus 122 ~~lGv~GaAiAt~is~ 137 (235)
.|+|..|.++|.+++.
T Consensus 6 iGlG~vGl~~a~~la~ 21 (202)
T d1mv8a2 6 FGLGYVGAVCAGCLSA 21 (202)
T ss_dssp ECCSTTHHHHHHHHHH
T ss_pred ECCCHhHHHHHHHHHh
Confidence 5799999999888875
No 7
>d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.91 E-value=5.9e+02 Score=15.42 Aligned_cols=34 Identities=15% Similarity=-0.141 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 047457 18 KIWIESKKVWCIAGPAPFSLLAAYCPNILLQAFD 51 (235)
Q Consensus 18 ~~~~~~k~ll~lalP~~~~~l~~~~~~~vD~~~v 51 (235)
++.+..+.+++-+.+.=....+..+..++|.+.+
T Consensus 52 ~~~~~l~~~l~~~~~~d~~~~A~~L~aliDGL~~ 85 (118)
T d2np5a2 52 TIRTGLSAVLIGIGTPEAETRAALLLATVDGLAL 85 (118)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHHH
Confidence 3444444455544444445555555666665554
No 8
>d1xp8a2 d.48.1.1 (A:283-341) RecA protein, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=2.86 E-value=3.3e+02 Score=15.30 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=14.8
Q ss_pred CCCchhhhhHhhHHHHHHHHHH
Q 047457 5 RYDYTEVTNQIRDKIWIESKKV 26 (235)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~k~l 26 (235)
...||...|+.+..+.+..|.-
T Consensus 36 a~~~L~enpel~~eie~~i~~~ 57 (59)
T d1xp8a2 36 TIAYIAERPEMEQEIRDRVMAA 57 (59)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHH
Confidence 3468888888886666665543
No 9
>d2gycx1 d.59.1.1 (X:3-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}
Probab=2.86 E-value=2e+02 Score=16.08 Aligned_cols=14 Identities=36% Similarity=0.150 Sum_probs=10.4
Q ss_pred chhhhhHhhHHHHH
Q 047457 8 YTEVTNQIRDKIWI 21 (235)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (235)
..+|||++|.+++.
T Consensus 34 ~~~dtp~irGmi~k 47 (56)
T d2gycx1 34 EREDTPAIRGMINA 47 (56)
T ss_dssp EECCCTTHHHHHHH
T ss_pred EeCCCHHHHHHHHh
Confidence 56788999877654
No 10
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}
Probab=2.61 E-value=2.5e+02 Score=16.61 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhccCCCcchHHHHHHHHH
Q 047457 119 VYVPDFGVFGAAAAFDISG 137 (235)
Q Consensus 119 I~~~~lGv~GaAiAt~is~ 137 (235)
|..+|+|..|-+.|-.+.+
T Consensus 8 v~ViGlG~sG~s~a~~L~~ 26 (93)
T d2jfga1 8 VVIIGLGLTGLSCVDFFLA 26 (93)
T ss_dssp EEEECCSHHHHHHHHHHHH
T ss_pred EEEEeECHHHHHHHHHHHH
Done!