Query 047461
Match_columns 312
No_of_seqs 155 out of 2680
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:17:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 5.3E-25 1.1E-29 217.7 20.0 271 3-284 69-370 (968)
2 PLN00113 leucine-rich repeat r 99.9 9.6E-25 2.1E-29 215.9 17.1 252 23-283 158-417 (968)
3 PLN03210 Resistant to P. syrin 99.9 2.5E-23 5.4E-28 207.1 21.7 281 1-285 530-884 (1153)
4 KOG4194 Membrane glycoprotein 99.9 2.5E-24 5.5E-29 188.4 4.9 270 5-284 127-430 (873)
5 KOG4194 Membrane glycoprotein 99.9 3.3E-23 7.1E-28 181.5 5.9 255 19-282 163-451 (873)
6 KOG0444 Cytoskeletal regulator 99.9 1.4E-23 3.1E-28 185.4 -3.4 221 58-286 103-355 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 2.7E-22 5.8E-27 177.5 -1.0 266 6-284 81-376 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 2E-21 4.3E-26 163.5 0.5 237 58-305 228-561 (565)
9 KOG0472 Leucine-rich repeat pr 99.8 1.6E-21 3.5E-26 164.1 -10.3 245 23-284 62-311 (565)
10 PLN03210 Resistant to P. syrin 99.7 5.1E-16 1.1E-20 155.1 21.2 218 58-284 634-907 (1153)
11 PRK15387 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 150.1 14.5 222 29-285 222-460 (788)
12 PRK15370 E3 ubiquitin-protein 99.7 2E-16 4.4E-21 149.2 12.3 224 29-283 199-428 (754)
13 KOG0618 Serine/threonine phosp 99.7 2.6E-18 5.7E-23 158.1 -1.1 217 58-281 219-487 (1081)
14 PRK15370 E3 ubiquitin-protein 99.7 9.7E-16 2.1E-20 144.6 12.5 223 29-284 178-402 (754)
15 KOG0618 Serine/threonine phosp 99.6 3.2E-18 6.9E-23 157.5 -6.3 122 178-302 361-483 (1081)
16 PRK15387 E3 ubiquitin-protein 99.6 3.3E-15 7.2E-20 140.5 13.1 154 29-213 201-356 (788)
17 KOG0617 Ras suppressor protein 99.6 8.7E-17 1.9E-21 121.0 -3.1 167 70-268 23-194 (264)
18 cd00116 LRR_RI Leucine-rich re 99.6 2.5E-15 5.4E-20 130.6 5.2 238 22-285 16-293 (319)
19 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.4E-21 119.6 -3.6 156 126-284 29-187 (264)
20 cd00116 LRR_RI Leucine-rich re 99.5 6.4E-15 1.4E-19 128.0 1.8 256 5-282 25-319 (319)
21 KOG4237 Extracellular matrix p 99.5 1.3E-15 2.9E-20 128.4 -2.9 265 6-282 70-358 (498)
22 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.7E-18 116.6 -3.7 100 211-311 261-362 (498)
23 KOG0532 Leucine-rich repeat (L 99.3 6.8E-13 1.5E-17 117.1 0.6 206 64-281 56-271 (722)
24 KOG0532 Leucine-rich repeat (L 99.2 1.2E-13 2.6E-18 121.7 -5.6 190 85-286 55-250 (722)
25 KOG3207 Beta-tubulin folding c 99.2 2.2E-12 4.7E-17 110.5 0.9 177 125-301 141-332 (505)
26 PF14580 LRR_9: Leucine-rich r 99.1 5.1E-11 1.1E-15 92.9 3.2 83 177-260 43-126 (175)
27 KOG1909 Ran GTPase-activating 99.1 1.5E-11 3.2E-16 102.7 -0.6 107 176-282 185-310 (382)
28 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.9E-15 95.4 3.8 126 177-306 285-410 (490)
29 KOG1259 Nischarin, modulator o 99.0 7.1E-11 1.5E-15 97.0 2.0 105 176-284 307-413 (490)
30 PF14580 LRR_9: Leucine-rich r 99.0 5.1E-10 1.1E-14 87.3 6.1 81 153-234 41-124 (175)
31 COG4886 Leucine-rich repeat (L 99.0 6.1E-10 1.3E-14 99.8 6.4 153 131-288 141-295 (394)
32 KOG3207 Beta-tubulin folding c 99.0 9.3E-11 2E-15 100.7 -0.3 203 79-284 120-340 (505)
33 PLN03150 hypothetical protein; 99.0 3.7E-09 7.9E-14 99.6 10.1 106 178-283 420-528 (623)
34 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 97.0 6.7 187 63-260 98-290 (394)
35 KOG1909 Ran GTPase-activating 98.9 6.5E-10 1.4E-14 93.0 2.8 207 78-284 28-284 (382)
36 PLN03150 hypothetical protein; 98.8 1.9E-08 4E-13 94.9 8.1 88 201-288 420-508 (623)
37 KOG4341 F-box protein containi 98.7 1.2E-10 2.6E-15 99.6 -7.2 154 152-305 292-462 (483)
38 PF13855 LRR_8: Leucine rich r 98.6 3.2E-08 6.9E-13 63.5 2.9 58 224-281 2-60 (61)
39 PF13855 LRR_8: Leucine rich r 98.6 3.9E-08 8.5E-13 63.1 3.1 61 199-259 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.5 7.5E-08 1.6E-12 93.2 4.2 82 21-108 563-647 (889)
41 KOG1859 Leucine-rich repeat pr 98.5 1.2E-08 2.6E-13 93.3 -1.2 108 177-289 165-273 (1096)
42 KOG4658 Apoptotic ATPase [Sign 98.5 1.7E-07 3.8E-12 90.7 5.0 100 58-163 545-651 (889)
43 KOG0531 Protein phosphatase 1, 98.4 1.8E-08 3.9E-13 90.7 -2.5 152 126-284 114-269 (414)
44 KOG2120 SCF ubiquitin ligase, 98.4 1.2E-08 2.5E-13 84.0 -3.7 177 81-280 186-373 (419)
45 PF12799 LRR_4: Leucine Rich r 98.3 9.1E-07 2E-11 52.2 4.4 41 247-287 1-41 (44)
46 PRK15386 type III secretion pr 98.3 4E-06 8.7E-11 73.6 9.1 109 131-257 73-187 (426)
47 KOG1859 Leucine-rich repeat pr 98.2 3.5E-08 7.7E-13 90.3 -4.7 170 77-282 106-291 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.2 1.4E-06 3E-11 71.2 4.5 205 78-285 28-287 (388)
49 KOG2120 SCF ubiquitin ligase, 98.1 3.1E-07 6.7E-12 75.8 -1.2 170 131-300 186-368 (419)
50 KOG0531 Protein phosphatase 1, 98.0 6.8E-07 1.5E-11 80.5 -0.8 167 125-298 90-261 (414)
51 KOG2982 Uncharacterized conser 98.0 6.7E-07 1.4E-11 73.9 -1.2 131 130-260 121-262 (418)
52 KOG3665 ZYG-1-like serine/thre 98.0 6.8E-06 1.5E-10 77.9 5.2 150 130-280 122-285 (699)
53 KOG4579 Leucine-rich repeat (L 98.0 1.7E-06 3.8E-11 63.4 0.9 103 179-283 30-136 (177)
54 PRK15386 type III secretion pr 98.0 5.9E-05 1.3E-09 66.4 9.5 132 79-233 51-187 (426)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 3.9E-10 46.6 4.3 40 223-263 1-40 (44)
56 KOG3665 ZYG-1-like serine/thre 97.9 7.7E-06 1.7E-10 77.5 3.4 144 153-298 121-278 (699)
57 KOG4579 Leucine-rich repeat (L 97.7 8.5E-06 1.9E-10 59.8 0.1 86 200-285 28-115 (177)
58 KOG1644 U2-associated snRNP A' 97.6 6.2E-05 1.4E-09 59.0 4.1 82 200-283 43-126 (233)
59 KOG2982 Uncharacterized conser 97.6 1E-05 2.2E-10 67.1 -0.4 79 222-300 198-284 (418)
60 COG5238 RNA1 Ran GTPase-activa 97.6 8.2E-06 1.8E-10 66.8 -1.2 131 153-284 156-317 (388)
61 KOG4341 F-box protein containi 97.6 3.5E-06 7.5E-11 72.8 -4.2 150 128-277 292-459 (483)
62 KOG1644 U2-associated snRNP A' 97.2 0.00056 1.2E-08 53.8 4.7 102 58-163 42-149 (233)
63 KOG2739 Leucine-rich acidic nu 96.8 0.0006 1.3E-08 55.7 1.9 35 177-211 66-103 (260)
64 KOG2739 Leucine-rich acidic nu 96.8 0.00043 9.3E-09 56.6 1.0 102 176-279 43-152 (260)
65 KOG2123 Uncharacterized conser 96.6 0.00039 8.5E-09 57.4 -0.8 97 177-276 20-123 (388)
66 KOG2123 Uncharacterized conser 96.6 0.00022 4.8E-09 58.8 -2.4 98 129-229 18-123 (388)
67 KOG1947 Leucine rich repeat pr 95.9 0.002 4.4E-08 59.1 0.0 15 267-281 359-373 (482)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.0037 7.9E-08 30.6 0.4 17 249-265 2-18 (22)
69 PF13504 LRR_7: Leucine rich r 95.3 0.013 2.9E-07 26.6 1.5 15 248-262 2-16 (17)
70 KOG1947 Leucine rich repeat pr 94.8 0.038 8.3E-07 50.7 4.7 128 153-280 187-331 (482)
71 KOG3864 Uncharacterized conser 94.8 0.0051 1.1E-07 48.5 -1.1 80 201-280 103-186 (221)
72 PF00560 LRR_1: Leucine Rich R 94.3 0.023 5E-07 27.7 1.0 20 81-100 1-20 (22)
73 PF13306 LRR_5: Leucine rich r 94.1 0.23 5E-06 36.5 6.6 37 125-163 7-44 (129)
74 smart00370 LRR Leucine-rich re 92.6 0.14 3E-06 26.0 2.3 21 246-266 1-21 (26)
75 smart00369 LRR_TYP Leucine-ric 92.6 0.14 3E-06 26.0 2.3 21 246-266 1-21 (26)
76 PF13306 LRR_5: Leucine rich r 91.6 1.1 2.3E-05 32.9 7.1 75 22-106 5-84 (129)
77 KOG4308 LRR-containing protein 90.5 0.0086 1.9E-07 54.7 -6.2 160 125-284 110-304 (478)
78 smart00364 LRR_BAC Leucine-ric 87.1 0.4 8.6E-06 24.4 1.2 18 247-264 2-19 (26)
79 KOG3864 Uncharacterized conser 84.7 0.3 6.4E-06 38.9 0.1 77 224-300 102-181 (221)
80 PF13516 LRR_6: Leucine Rich r 82.2 0.62 1.3E-05 23.0 0.6 11 249-259 4-14 (24)
81 smart00367 LRR_CC Leucine-rich 80.8 0.68 1.5E-05 23.4 0.5 18 269-286 1-18 (26)
82 smart00365 LRR_SD22 Leucine-ri 78.6 2 4.3E-05 21.9 1.8 13 248-260 3-15 (26)
83 KOG0473 Leucine-rich repeat pr 75.4 0.089 1.9E-06 42.8 -5.6 54 179-233 68-121 (326)
84 smart00368 LRR_RI Leucine rich 68.0 3.7 8E-05 21.1 1.3 15 270-284 2-16 (28)
85 KOG0473 Leucine-rich repeat pr 61.8 0.32 6.9E-06 39.7 -5.1 80 129-210 41-122 (326)
86 KOG3763 mRNA export factor TAP 58.8 9.7 0.00021 35.3 3.0 33 177-209 219-254 (585)
87 KOG3763 mRNA export factor TAP 58.8 6.7 0.00015 36.3 2.0 78 128-205 216-307 (585)
88 KOG4308 LRR-containing protein 53.7 1.1 2.3E-05 41.3 -3.9 129 156-284 89-247 (478)
89 PF07725 LRR_3: Leucine Rich R 22.1 66 0.0014 15.2 1.2 17 82-98 2-18 (20)
90 TIGR00864 PCC polycystin catio 21.0 74 0.0016 36.0 2.5 32 229-260 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=5.3e-25 Score=217.72 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=140.0
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCC-C-CCccEEeeCCCCCCCCCCccCcC
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSLPSNLSAE 80 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~l~ 80 (312)
.+++.+++..++. .+.....|..+++|++|++++|.+. ...+..+. . .+|++|++++|.+....+...++
T Consensus 69 ~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~~------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQLS------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP 140 (968)
T ss_pred CcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCccC------CcCChHHhccCCCCCEEECcCCccccccCccccC
Confidence 3566666554433 2233567888999999999887652 22333332 2 66777777776654322223455
Q ss_pred CccEEeCCCCccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEE
Q 047461 81 KLMLLEVPDSDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKL 159 (312)
Q Consensus 81 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 159 (312)
+|++|++++|.+. .+|..+..+++|+.|...... +...+|. .++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCc-ccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 6666666666655 345555666666633332210 1122333 45555555555555555545555555555555555
Q ss_pred eccCCCCCCCCCccc--cCCCCeEEcCCcccc-cchHHHHh------------------------cCCCCEEecCCCCCC
Q 047461 160 DLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSSIER------------------------LLRLGYLDLSDCKRL 212 (312)
Q Consensus 160 ~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~~~~------------------------l~~L~~L~l~~n~~~ 212 (312)
++++|...+.+|... .++|+.|++++|.++ .+|..++. +++|++|++++|.+.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 555544333333221 234455555544443 23444444 444555555444444
Q ss_pred CcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCc
Q 047461 213 KSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 213 ~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+.+
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 444444444555555555554444445555555555555555555554 444455555555555555555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=9.6e-25 Score=215.88 Aligned_cols=252 Identities=22% Similarity=0.254 Sum_probs=117.9
Q ss_pred chhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCC-CCCCcc-CcCCccEEeCCCCccc-chhhh
Q 047461 23 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDC 98 (312)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~ 98 (312)
..++.+++|++|++++|.+ ....+..+.. ++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..
T Consensus 158 ~~~~~l~~L~~L~L~~n~l------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVL------VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred hHHhcCCCCCEEECccCcc------cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh
Confidence 3455555555555555442 1122333333 55555555555432 223322 4555555555555544 34444
Q ss_pred cccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cC
Q 047461 99 VKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SG 176 (312)
Q Consensus 99 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~ 176 (312)
+..+++|+.|....+. ....+|. .++.+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|... .+
T Consensus 232 l~~l~~L~~L~L~~n~-l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 232 IGGLTSLNHLDLVYNN-LTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred HhcCCCCCEEECcCce-eccccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 5555555533222211 1122333 45555555555555555444555555555555555555544333333321 24
Q ss_pred CCCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461 177 NISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA 255 (312)
Q Consensus 177 ~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 255 (312)
+|+.|++.+|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 4555555555444 234444455555555555555555555555555555555555554444444444444444444444
Q ss_pred CCCCc-ccchHhhccCCCcEEEecCCcCC
Q 047461 256 KTNIE-RIPESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 256 ~n~l~-~~~~~l~~~~~L~~L~l~~n~~~ 283 (312)
+|.+. .+|..+..+++|+.|++++|.+.
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 44443 33444444444444444444443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.5e-23 Score=207.10 Aligned_cols=281 Identities=34% Similarity=0.528 Sum_probs=184.8
Q ss_pred CCcceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC--CCccEEeeCCCCCCCCCCccC
Q 047461 1 GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSLPSNLS 78 (312)
Q Consensus 1 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~ 78 (312)
|+.++++|.++++..........+|.+|++|+.|.++.+...........++.++.. .+|+.|++.++.++.+|..+.
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~ 609 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR 609 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence 677899999999888777888899999999999999875432222233456666666 679999999999999998888
Q ss_pred cCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcE
Q 047461 79 AEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTK 158 (312)
Q Consensus 79 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 158 (312)
+.+|+.|++.++.+..+|.++..+++|+.+....+.. ...+| .++.+++|++|++++|.....+|..+..+++|+.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN-LKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCC-cCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 8899999999999988888877888888544433221 22232 2444555666666555545555555555555555
Q ss_pred EeccCCCCCCCCCccc----------------------cCCCCeEEcCCcccccchHHH---------------------
Q 047461 159 LDLSGCSKLKRLPEIS----------------------SGNISWLFLRGIAIEELPSSI--------------------- 195 (312)
Q Consensus 159 L~l~~~~~l~~~p~~~----------------------~~~L~~L~l~~~~l~~l~~~~--------------------- 195 (312)
|++++|..+..+|... ..+|+.|++.++.++.+|..+
T Consensus 686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 686 LDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred EeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 5555544443333211 134555555555555444321
Q ss_pred ---------HhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh--------------------hCC
Q 047461 196 ---------ERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL--------------------GQL 246 (312)
Q Consensus 196 ---------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~--------------------~~l 246 (312)
...++|+.|++++|.....+|.+++++++|+.|++++|...+.+|... ...
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence 012356666666666666666667777777777777665555554332 012
Q ss_pred CCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461 247 SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 247 ~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
.+|+.|++++|.++.+|..+..+++|+.|++++|.-...
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 456677777777788888888999999999999755443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.5e-24 Score=188.45 Aligned_cols=270 Identities=21% Similarity=0.208 Sum_probs=190.0
Q ss_pred eEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCC
Q 047461 5 IEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEK 81 (312)
Q Consensus 5 i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~ 81 (312)
++.++|..+... .+..+++.-++-||.||++.|.++.. .. ..+.. .++++|++++|+++.+.... .+.+
T Consensus 127 l~~L~L~~N~I~--sv~se~L~~l~alrslDLSrN~is~i-----~~-~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 127 LEKLDLRHNLIS--SVTSEELSALPALRSLDLSRNLISEI-----PK-PSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred eeEEeeeccccc--cccHHHHHhHhhhhhhhhhhchhhcc-----cC-CCCCCCCCceEEeeccccccccccccccccch
Confidence 444554444332 22336666677777788877765222 21 22223 78999999999988876543 6778
Q ss_pred ccEEeCCCCcccchhhh-cccCCCch--hcchhhcccc--------------------cccCCCCCCcCCCcCCcEEEcC
Q 047461 82 LMLLEVPDSDIKRLWDC-VKHYSKLN--QIIHAACHKL--------------------IAKIPNPTLMPRLNKLVTLNLR 138 (312)
Q Consensus 82 L~~L~l~~~~~~~~~~~-~~~l~~L~--~l~~~~~~~~--------------------~~~~~~~~~~~~l~~L~~L~l~ 138 (312)
|..|.+++|+++.+|.. |+.+++|+ +|..+.+... +..+.. ..|..+.++++|++.
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLE 277 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccceeecc
Confidence 88899999999888854 55688888 4444442211 111111 144556677777777
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCc--cc-cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCc
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE--IS-SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKS 214 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~--~~-~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~ 214 (312)
.|++...-..++.++++|+.|+++.| .+..+.. +. .++|++|++++|.+++++. .+..++.|++|.|++|++.-.
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred cchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 77755444556778888888888884 4443332 22 5789999999999998875 577788899999999887665
Q ss_pred CchhhhcCCCCCeEeccCCCCCCc---chhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCCc
Q 047461 215 LPSSLYRLKSLGVLSLCGCSNLQR---LPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 215 ~~~~l~~l~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~ 284 (312)
....|..+.+|++|++++|.+... -...|.++++|+.|++.+|+++.+| .++.+++.|+.|+|.+|.+..
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence 566788889999999999887643 3456778999999999999999877 478899999999999998854
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-23 Score=181.53 Aligned_cols=255 Identities=18% Similarity=0.148 Sum_probs=182.0
Q ss_pred CCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccch
Q 047461 19 HPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRL 95 (312)
Q Consensus 19 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~ 95 (312)
.....+|.+-.++++|++++|.++..+ ...+.. .+|..|.++.|+++.+|... .+++|+.|++..|.+...
T Consensus 163 ~i~~~sfp~~~ni~~L~La~N~It~l~------~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 163 EIPKPSFPAKVNIKKLNLASNRITTLE------TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred cccCCCCCCCCCceEEeeccccccccc------cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 334466766678888888887652221 122223 56777778888877777543 477777777777776644
Q ss_pred -hhhcccCCCchh--cchhhcccc--------------------cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccC
Q 047461 96 -WDCVKHYSKLNQ--IIHAACHKL--------------------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN 152 (312)
Q Consensus 96 -~~~~~~l~~L~~--l~~~~~~~~--------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 152 (312)
+..|.++++|+. +..+.+..+ +..+.. -++-++++|+.|++++|.+...-++..+.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-ccccccchhhhhccchhhhheeecchhhh
Confidence 334555555552 222222221 111111 14567899999999999976666777878
Q ss_pred CCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCc---CchhhhcCCCC
Q 047461 153 LEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKS---LPSSLYRLKSL 225 (312)
Q Consensus 153 ~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L 225 (312)
.++|+.|+++. +.+..++..+ ...|++|.++.|.+..+.. .+.++++|+.|||+.|.+.+. ....+..+++|
T Consensus 316 tqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L 394 (873)
T KOG4194|consen 316 TQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL 394 (873)
T ss_pred cccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence 89999999999 5566666554 4689999999999998875 477899999999999987653 33467789999
Q ss_pred CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcC
Q 047461 226 GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 226 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
+.|++.+|++..---..|.+++.|++||+.+|.|. .-|.++..+ .|++|.+..-.+
T Consensus 395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 99999998876555568999999999999999998 456677776 888887665433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-23 Score=185.42 Aligned_cols=221 Identities=24% Similarity=0.318 Sum_probs=123.4
Q ss_pred CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchhhhc-ccCCCch--hcchhhcccccccCCCCCCcCCCcCCc
Q 047461 58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLWDCV-KHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLV 133 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~ 133 (312)
..|..|+++.|.++.+|... .-+++-+|++++|+|..+|..+ ..+..|- +|+.+. ++.+|+ .+..+..|+
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr----Le~LPP--Q~RRL~~Lq 176 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR----LEMLPP--QIRRLSMLQ 176 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch----hhhcCH--HHHHHhhhh
Confidence 45555555555555555443 3445555555555555555432 2333332 344444 334444 444555555
Q ss_pred EEEcCCCCcC-------------------------ccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCc
Q 047461 134 TLNLRGSKSL-------------------------KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGI 186 (312)
Q Consensus 134 ~L~l~~~~~~-------------------------~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~ 186 (312)
+|.+++|.+. ..+|..+..+.+|..+|+++|+ +...|..- ..+|+.|++++|
T Consensus 177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC
Confidence 5555555321 1244445555555555555532 33333222 345566666666
Q ss_pred ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC-CcchhhhhCCCCCcEEeccCCCCcccchH
Q 047461 187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL-QRLPECLGQLSSPITFNLAKTNIERIPES 265 (312)
Q Consensus 187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 265 (312)
.++++.-..+...+|+.|+++.|+ ...+|..+..++.|+.|.+.+|.+. ..+|..++++.+|+.+..++|.+.-+|+.
T Consensus 256 ~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 256 KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence 666555555555556666666654 3456777777777777777666553 45677777777777777777777767777
Q ss_pred hhccCCCcEEEecCCcCCccc
Q 047461 266 IIQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 266 l~~~~~L~~L~l~~n~~~~~~ 286 (312)
+..|.+|+.|.|+.|.+..-+
T Consensus 335 lcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred hhhhHHHHHhcccccceeech
Confidence 777777777777777665533
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=2.7e-22 Score=177.46 Aligned_cols=266 Identities=19% Similarity=0.264 Sum_probs=208.4
Q ss_pred EEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCCc
Q 047461 6 EGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKL 82 (312)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L 82 (312)
+.+.++-++....+++ ..+.+++.|..|++++|.+ ...|..+.. .++-.|++++|.+.++|... ++.+|
T Consensus 81 Rsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL-------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQL-------REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred HHHhhhccccccCCCC-chhcccccceeeecchhhh-------hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 3444444555444443 4555888899999998764 445666666 77888889998888888744 78888
Q ss_pred cEEeCCCCcccchhhhcccCCCch--hcchhh----------------------cccccccCCCCCCcCCCcCCcEEEcC
Q 047461 83 MLLEVPDSDIKRLWDCVKHYSKLN--QIIHAA----------------------CHKLIAKIPNPTLMPRLNKLVTLNLR 138 (312)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~----------------------~~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (312)
-.|++++|.+..+|.-...+.+|+ +|+.+. .......+|. ++..+.+|..++++
T Consensus 153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt--sld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT--SLDDLHNLRDVDLS 230 (1255)
T ss_pred hhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC--chhhhhhhhhcccc
Confidence 888888888887776555555555 233222 1111334454 88889999999999
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCC-cC
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLK-SL 215 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~-~~ 215 (312)
.|. +..+|..+.++++|+.|++++|. +..+.... -.+++.|+++.|+++.+|..+-.+++|+.|.+.+|++.. -+
T Consensus 231 ~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 231 ENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred ccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC
Confidence 998 78889988899999999999954 44333221 258999999999999999999999999999999988755 48
Q ss_pred chhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 216 PSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 216 ~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
|..++.+..|+.+...+| ...-+|+.++++..|+.|.++.|++..+|++|.-++.|+.|++..|+-..
T Consensus 309 PSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 889999999999999874 56889999999999999999999999999999999999999999997643
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=2e-21 Score=163.51 Aligned_cols=237 Identities=22% Similarity=0.288 Sum_probs=140.6
Q ss_pred CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCc
Q 047461 58 AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLV 133 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~ 133 (312)
..|++++++.|.+..+|+.. .+..+.+||++.|.++..|+.++.+.+|+ +++.+. +..+|. .+|++ .|+
T Consensus 228 s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~----is~Lp~--sLgnl-hL~ 300 (565)
T KOG0472|consen 228 SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND----ISSLPY--SLGNL-HLK 300 (565)
T ss_pred HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc----cccCCc--ccccc-eee
Confidence 45555565555555555433 56666666777777776666666666666 555554 444555 66666 666
Q ss_pred EEEcCCCCcCc-------------------------------------cccc----cccCCCcCcEEeccCCCCCCCCCc
Q 047461 134 TLNLRGSKSLK-------------------------------------SLPS----GIFNLEFLTKLDLSGCSKLKRLPE 172 (312)
Q Consensus 134 ~L~l~~~~~~~-------------------------------------~~~~----~l~~~~~L~~L~l~~~~~l~~~p~ 172 (312)
.|.+.+|.+.+ ..+. ....+.+.+.|+++. ..+...|.
T Consensus 301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPd 379 (565)
T KOG0472|consen 301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPD 379 (565)
T ss_pred ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCH
Confidence 66666664210 0000 011122333444433 22222332
Q ss_pred cc-----cCCCCeEEcCCcccccch------------------------HHHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461 173 IS-----SGNISWLFLRGIAIEELP------------------------SSIERLLRLGYLDLSDCKRLKSLPSSLYRLK 223 (312)
Q Consensus 173 ~~-----~~~L~~L~l~~~~l~~l~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 223 (312)
.- ..-+..++++.|++.++| ..+..+++|..|++++| ...++|..++.+.
T Consensus 380 EVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv 458 (565)
T KOG0472|consen 380 EVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLV 458 (565)
T ss_pred HHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhh
Confidence 11 011445555555555433 22455667777777764 3556677777777
Q ss_pred CCCeEeccCCCCC----------------------Ccc-hhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCC
Q 047461 224 SLGVLSLCGCSNL----------------------QRL-PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYG 280 (312)
Q Consensus 224 ~L~~L~l~~~~~~----------------------~~~-p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n 280 (312)
.|+.++++.|++. +.+ |+.+.++.+|..||+.+|.+..+|+.++++.+|+.|++.+|
T Consensus 459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGN 538 (565)
T ss_pred hhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCC
Confidence 7777777766431 222 34477889999999999999999999999999999999999
Q ss_pred cCCccccccccCCCCchhHHHhhhc
Q 047461 281 IVEDTLRIQHTNHTPAVRWQEIWQE 305 (312)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (312)
++...... +-..+...+..+.++
T Consensus 539 pfr~Pr~~--iLmkgT~aiL~ylrd 561 (565)
T KOG0472|consen 539 PFRQPRHQ--ILMKGTAAILSYLRD 561 (565)
T ss_pred ccCCCHHH--HhccChHHHHHHhcc
Confidence 99843322 234556666555433
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.6e-21 Score=164.08 Aligned_cols=245 Identities=26% Similarity=0.345 Sum_probs=174.6
Q ss_pred chhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchhhhcc
Q 047461 23 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLWDCVK 100 (312)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~ 100 (312)
..+.++..+.+|.+.++.. ...|..++. ..++.++++.+.+..+|+.. .+..+..++.++|.+..+++.++
T Consensus 62 ~dl~nL~~l~vl~~~~n~l-------~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKL-------SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred HhhhcccceeEEEeccchh-------hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH
Confidence 4455566666666666542 445555555 66666666766666666554 66667777777777777777666
Q ss_pred cCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCC
Q 047461 101 HYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNI 178 (312)
Q Consensus 101 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L 178 (312)
.+..++++.... +-+..+|. .++.+.++..+++.+|. ...+|+..-+|+.|++++..+ +.++.+|+.. ..+|
T Consensus 135 ~~~~l~dl~~~~--N~i~slp~--~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 135 RLLDLEDLDATN--NQISSLPE--DMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESL 208 (565)
T ss_pred HHhhhhhhhccc--cccccCch--HHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhh
Confidence 666666433221 11445555 67777788888888877 555555555688888888877 5667677654 4677
Q ss_pred CeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchh-hhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461 179 SWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSS-LYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT 257 (312)
Q Consensus 179 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n 257 (312)
.-|++..|++..+| .+++++.|+.|.++.|++ ..+|.. .+.+.++.+||+++|. .++.|+.++.+.+|++||+++|
T Consensus 209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHHHhhhcccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCC
Confidence 78888888888887 677788888888888764 444544 4478889999998864 5788899999999999999999
Q ss_pred CCcccchHhhccCCCcEEEecCCcCCc
Q 047461 258 NIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 258 ~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
.|+.+|..++++ .|+.|.+.+|++..
T Consensus 286 ~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 286 DISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ccccCCcccccc-eeeehhhcCCchHH
Confidence 999999989988 89999999998843
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=5.1e-16 Score=155.15 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=128.2
Q ss_pred CCccEEeeCCCC-CCCCCCccCcCCccEEeCCCCc-ccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461 58 AEVKYLHWHGYP-LKSLPSNLSAEKLMLLEVPDSD-IKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL 135 (312)
Q Consensus 58 ~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 135 (312)
++|++++++++. +..+|....+++|+.|++++|. +..+|..+..+++|+.|....|.. ...+|. .+ .+++|++|
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-L~~Lp~--~i-~l~sL~~L 709 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-LEILPT--GI-NLKSLYRL 709 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC-cCccCC--cC-CCCCCCEE
Confidence 455555555433 3444443345555555555542 334455555555555444333322 223332 22 34455555
Q ss_pred EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--------------------------------ccCCCCeEEc
Q 047461 136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--------------------------------SSGNISWLFL 183 (312)
Q Consensus 136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--------------------------------~~~~L~~L~l 183 (312)
++++|...+.+|. ..++|+.|+++++. +..+|.. ..+.|+.|++
T Consensus 710 ~Lsgc~~L~~~p~---~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 710 NLSGCSRLKSFPD---ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred eCCCCCCcccccc---ccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 5555443333332 12334444444422 2222211 0246777777
Q ss_pred CCc-ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC--------------------Ccchhh
Q 047461 184 RGI-AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL--------------------QRLPEC 242 (312)
Q Consensus 184 ~~~-~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~--------------------~~~p~~ 242 (312)
++| .+..+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|... ..+|.+
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence 776 455688888888888888888887666666543 5566666666665332 356778
Q ss_pred hhCCCCCcEEeccCC-CCcccchHhhccCCCcEEEecCCcCCc
Q 047461 243 LGQLSSPITFNLAKT-NIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 243 ~~~l~~L~~L~l~~n-~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+..+++|+.|++++| .++.+|..+..+++|+.+++++|.-..
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 889999999999995 477888888899999999999996543
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1.2e-16 Score=150.12 Aligned_cols=222 Identities=22% Similarity=0.216 Sum_probs=140.2
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI 108 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l 108 (312)
++|+.|.+.+|.+. .++.. .++|++|++++|.+..+|.. +++|+.|++.+|.+..+|.....+..| .+
T Consensus 222 ~~L~~L~L~~N~Lt-------~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L-~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLT-------SLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKL-WI 289 (788)
T ss_pred cCCCEEEccCCcCC-------CCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEE-EC
Confidence 37888888887652 12211 16788888888888877753 457777788777777665432222211 22
Q ss_pred chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccccccc-----------------CCCcCcEEeccCCCCCCCCC
Q 047461 109 IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-----------------NLEFLTKLDLSGCSKLKRLP 171 (312)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----------------~~~~L~~L~l~~~~~l~~~p 171 (312)
+.+. +..+|. ..++|+.|++++|.+. .+|.... ...+|++|++++| .+..+|
T Consensus 290 s~N~----Lt~LP~-----~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~LP 358 (788)
T PRK15387 290 FGNQ----LTSLPV-----LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASLP 358 (788)
T ss_pred cCCc----cccccc-----cccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCC-ccCCCC
Confidence 2222 222221 1235666666666532 2222100 1135666677663 344455
Q ss_pred ccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcE
Q 047461 172 EISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPIT 251 (312)
Q Consensus 172 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 251 (312)
... .+++.|++.+|.++.+|.. ..+|+.|++++|++.+ +|.. .++|+.|++++|.+. .+|..+ .+|+.
T Consensus 359 ~lp-~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~ 426 (788)
T PRK15387 359 TLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLS 426 (788)
T ss_pred CCC-cccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhh
Confidence 433 5666677777776666643 2468888888887653 5542 357889999988765 466543 46788
Q ss_pred EeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461 252 FNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 252 L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
|++++|.++.+|..+..+++|+.|++++|++.+.
T Consensus 427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred hhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 9999999999999999999999999999999764
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=2e-16 Score=149.20 Aligned_cols=224 Identities=23% Similarity=0.333 Sum_probs=162.5
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchh-
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ- 107 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~- 107 (312)
++|+.|++++|.+. .++..+. .+|++|++++|.+..+|..+ ...|+.|++++|.+..+|..+. .+|+.
T Consensus 199 ~~L~~L~Ls~N~Lt-------sLP~~l~-~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELK-------SLPENLQ-GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCCCCC-------cCChhhc-cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 47888999887652 2232222 68999999999888887643 3478899999999888876543 35663
Q ss_pred -cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461 108 -IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI 186 (312)
Q Consensus 108 -l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~ 186 (312)
++.+. +..+|. .+. ++|+.|++++|. ...+|..+ .++|+.|++++|. +..+|....++|+.|++.+|
T Consensus 268 ~Ls~N~----L~~LP~--~l~--~sL~~L~Ls~N~-Lt~LP~~l--p~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 268 DLFHNK----ISCLPE--NLP--EELRYLSVYDNS-IRTLPAHL--PSGITHLNVQSNS-LTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred ECcCCc----cCcccc--ccC--CCCcEEECCCCc-cccCcccc--hhhHHHHHhcCCc-cccCCccccccceeccccCC
Confidence 44333 334443 443 479999999987 44566543 2578889999854 55566544578999999999
Q ss_pred ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHh
Q 047461 187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESI 266 (312)
Q Consensus 187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l 266 (312)
.++.+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.+. .+|..+. ..|+.|++++|.++.+|..+
T Consensus 336 ~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl 407 (754)
T PRK15370 336 ALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESL 407 (754)
T ss_pred ccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhH
Confidence 9999887653 68999999999865 466654 368999999998765 5666654 46899999999999777654
Q ss_pred h----ccCCCcEEEecCCcCC
Q 047461 267 I----QLFVSGYLLLSYGIVE 283 (312)
Q Consensus 267 ~----~~~~L~~L~l~~n~~~ 283 (312)
. .++.+..+++.+|++.
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 3 4588899999999985
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=2.6e-18 Score=158.10 Aligned_cols=217 Identities=24% Similarity=0.317 Sum_probs=120.7
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccc-------------------
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKL------------------- 116 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~------------------- 116 (312)
++++.|+.+.|.+..+...+...+|++++++++.+..+|+.++.+.+|+ ...++....+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence 5566666666665544444455566677777777666666666666666 2333321111
Q ss_pred cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccC--------------------------CCcCcEEeccCCCCCC-C
Q 047461 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN--------------------------LEFLTKLDLSGCSKLK-R 169 (312)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--------------------------~~~L~~L~l~~~~~l~-~ 169 (312)
...++. ..+.+..|++|++..|. +..+|+.+.. ++.|+.|.+.+|.... .
T Consensus 299 l~yip~--~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 299 LEYIPP--FLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhCCC--cccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 233333 34445666666666655 3333321111 1122233333322111 1
Q ss_pred CCccc-cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC
Q 047461 170 LPEIS-SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247 (312)
Q Consensus 170 ~p~~~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 247 (312)
+|... +.+|++|++++|.+..+|.. +..+..|+.|++++|++ +.+|..+..++.|++|...+|. ...+| .+..++
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~ 452 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLP 452 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcC
Confidence 23222 35666777777766666643 45566666777777653 3455666666667776665543 34566 566778
Q ss_pred CCcEEeccCCCCc--ccchHhhccCCCcEEEecCCc
Q 047461 248 SPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGI 281 (312)
Q Consensus 248 ~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~ 281 (312)
.|+.+|++.|.++ .+|.... .++|++||+++|.
T Consensus 453 qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 453 QLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred cceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 8888888888877 3444332 2788888888886
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=9.7e-16 Score=144.63 Aligned_cols=223 Identities=20% Similarity=0.269 Sum_probs=166.5
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN-- 106 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~-- 106 (312)
.+...|+++++.+ ..+|..+. ..++.|++++|.+..+|.... .+|+.|++++|.++.+|..+. ++|+
T Consensus 178 ~~~~~L~L~~~~L-------tsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGL-------TTIPACIP-EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCc-------CcCCcccc-cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEE
Confidence 3567788877543 22333222 579999999999998887543 589999999999998886543 3566
Q ss_pred hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461 107 QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI 186 (312)
Q Consensus 107 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~ 186 (312)
+++.+. +..+|. .+. .+|+.|++++|. +..+|..+. ++|+.|++++| .+..+|......|+.|++++|
T Consensus 247 ~Ls~N~----L~~LP~--~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N 314 (754)
T PRK15370 247 ELSINR----ITELPE--RLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSN 314 (754)
T ss_pred ECcCCc----cCcCCh--hHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCC
Confidence 444444 334444 443 379999999988 446776553 58999999996 455666544467999999999
Q ss_pred ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHh
Q 047461 187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESI 266 (312)
Q Consensus 187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l 266 (312)
.++.+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.++.+|..+
T Consensus 315 ~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 315 SLTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL 386 (754)
T ss_pred ccccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH
Confidence 9998886543 689999999998654 666553 68999999998764 577655 368999999999999999876
Q ss_pred hccCCCcEEEecCCcCCc
Q 047461 267 IQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 267 ~~~~~L~~L~l~~n~~~~ 284 (312)
. ..|+.|++++|++.+
T Consensus 387 ~--~sL~~LdLs~N~L~~ 402 (754)
T PRK15370 387 P--AALQIMQASRNNLVR 402 (754)
T ss_pred H--HHHHHHhhccCCccc
Confidence 5 479999999999864
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=3.2e-18 Score=157.54 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=69.6
Q ss_pred CCeEEcCCccccc-chHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 178 ISWLFLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 178 L~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
|+.|++.+|.+++ .-+.+.++..|+.|+|++|++...-...+.++..|+.|++++|. ...+|+.+..+..|++|..-+
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcC
Confidence 4445555555542 11224455666666666666444333455666666666666644 355666666666666666666
Q ss_pred CCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHh
Q 047461 257 TNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEI 302 (312)
Q Consensus 257 n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 302 (312)
|.+..+| .+.+++.|+.+|++.|.+......++.+- |.++.++.
T Consensus 440 N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdl 483 (1081)
T KOG0618|consen 440 NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDL 483 (1081)
T ss_pred Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeec
Confidence 6666666 46667777777777777654443443332 44444433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=3.3e-15 Score=140.48 Aligned_cols=154 Identities=23% Similarity=0.236 Sum_probs=104.9
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI 108 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l 108 (312)
.+-..|+++++.+ ..+|..+. .+|+.|++.+|.++.+|. .+++|++|++++|.++.+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~L-------tsLP~~l~-~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGL-------TTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCC-------CcCCcchh-cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---cccccee
Confidence 4466788888654 23444332 579999999999999886 468999999999999988753 3456643
Q ss_pred --chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461 109 --IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI 186 (312)
Q Consensus 109 --~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~ 186 (312)
+.+. +..++. . ..+|+.|++++|. ...+|. .+++|+.|++++| .+..+|... ..|+.|++.+|
T Consensus 268 ~Ls~N~----L~~Lp~--l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~lp-~~L~~L~Ls~N 332 (788)
T PRK15387 268 SIFSNP----LTHLPA--L---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPALP-SELCKLWAYNN 332 (788)
T ss_pred eccCCc----hhhhhh--c---hhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCCc-ccccccccccC
Confidence 3333 222332 1 2478999999998 556665 3578999999996 455555533 56777777777
Q ss_pred ccccchHHHHhcCCCCEEecCCCCCCC
Q 047461 187 AIEELPSSIERLLRLGYLDLSDCKRLK 213 (312)
Q Consensus 187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~ 213 (312)
.++.+|.. ..+|+.|++++|++.+
T Consensus 333 ~L~~LP~l---p~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 333 QLTSLPTL---PSGLQELSVSDNQLAS 356 (788)
T ss_pred cccccccc---ccccceEecCCCccCC
Confidence 77766642 1367777777766543
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=8.7e-17 Score=120.99 Aligned_cols=167 Identities=22% Similarity=0.342 Sum_probs=107.0
Q ss_pred CCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc
Q 047461 70 LKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP 147 (312)
Q Consensus 70 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 147 (312)
+..++..+.+.+++.|.+++|.++.+|..+..+.+|+ .+..+. +.++|. .+.++++|+.|++.-|+ ...+|
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq----ie~lp~--~issl~klr~lnvgmnr-l~~lp 95 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ----IEELPT--SISSLPKLRILNVGMNR-LNILP 95 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch----hhhcCh--hhhhchhhhheecchhh-hhcCc
Confidence 3355666677788888888888888887777888877 344444 556666 78888888888888877 67778
Q ss_pred ccccCCCcCcEEeccCCCCCC-CCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCC
Q 047461 148 SGIFNLEFLTKLDLSGCSKLK-RLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKS 224 (312)
Q Consensus 148 ~~l~~~~~L~~L~l~~~~~l~-~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 224 (312)
..+++++.|+.||+..|+... .+|... +..|+.|++++|.++-+|..++.+++|+.|.+..|.+
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl------------- 162 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL------------- 162 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-------------
Confidence 888888888888888865443 244433 3445555555555555555555555555555544432
Q ss_pred CCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhc
Q 047461 225 LGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQ 268 (312)
Q Consensus 225 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~ 268 (312)
-.+|..++.+..|++|.+.+|+++.+|+.++.
T Consensus 163 ------------l~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 163 ------------LSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred ------------hhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 23444455555555555555555555555443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=2.5e-15 Score=130.61 Aligned_cols=238 Identities=20% Similarity=0.162 Sum_probs=143.6
Q ss_pred cchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-------cc-CcCCccEEeCCCCcc
Q 047461 22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-------NL-SAEKLMLLEVPDSDI 92 (312)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-------~~-~l~~L~~L~l~~~~~ 92 (312)
...|..+.+|+.|+++++.+.... ...+.+.+.. +++++++++++.+...+. .+ .+++|+.|++++|.+
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 356677788999999987753321 1223333334 678888888876542111 11 566888888888776
Q ss_pred cch-hhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc----cccccccCC-CcCcEEeccCCCC
Q 047461 93 KRL-WDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK----SLPSGIFNL-EFLTKLDLSGCSK 166 (312)
Q Consensus 93 ~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~l~~~~~ 166 (312)
... +..+..+ ... ++|++|++++|.+.. .+...+..+ ++|+.|++++|..
T Consensus 94 ~~~~~~~~~~l-----------------------~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 94 GPDGCGVLESL-----------------------LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred ChhHHHHHHHH-----------------------hcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 531 1111111 111 357777777776442 122234445 6777777777653
Q ss_pred CCC----CCccc--cCCCCeEEcCCccccc-----chHHHHhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEecc
Q 047461 167 LKR----LPEIS--SGNISWLFLRGIAIEE-----LPSSIERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLC 231 (312)
Q Consensus 167 l~~----~p~~~--~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~ 231 (312)
... ++... ..+++.|++.+|.++. ++..+..+++|++|++++|.+.+. +...+..+++|++|+++
T Consensus 150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 321 11111 2467788887777762 333455566888888888876532 33445567788888888
Q ss_pred CCCCCCcchhhhh-----CCCCCcEEeccCCCCc-----ccchHhhccCCCcEEEecCCcCCcc
Q 047461 232 GCSNLQRLPECLG-----QLSSPITFNLAKTNIE-----RIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 232 ~~~~~~~~p~~~~-----~l~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
+|.+.+.....+. ..+.|++|++++|.++ .+...+..+++|+++++++|.+.+.
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 8876653222222 2368888888888875 2344556677888888888888754
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-16 Score=119.64 Aligned_cols=156 Identities=22% Similarity=0.307 Sum_probs=130.8
Q ss_pred cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCE
Q 047461 126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGY 203 (312)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 203 (312)
+-.+..++.|.+++|. ...+|+.+..+.+|+.|++++ +.+..+|... .++|+.|+++-|.+..+|..+|.++-|+.
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 4445667778888887 666676677788888888887 5566666543 56788888888888889999999999999
Q ss_pred EecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461 204 LDLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 204 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
||+++|++.. .+|..|+.++.|+.|++++|. .+-+|..++++++|+.|.+..|.+-.+|..++.+..|++|.+.+|.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 9999988754 788889999999999999864 57789999999999999999999999999999999999999999988
Q ss_pred Cc
Q 047461 283 ED 284 (312)
Q Consensus 283 ~~ 284 (312)
..
T Consensus 186 ~v 187 (264)
T KOG0617|consen 186 TV 187 (264)
T ss_pred ee
Confidence 65
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=6.4e-15 Score=128.04 Aligned_cols=256 Identities=18% Similarity=0.117 Sum_probs=161.3
Q ss_pred eEEEEeecCCccc--cCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-Cc
Q 047461 5 IEGMCLDMSKVKE--LHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SA 79 (312)
Q Consensus 5 i~~~~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l 79 (312)
++.+.+....... .....+.+...+++++++++++.+.+...........+.. ++|++|+++++.+... +..+ .+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 5566666554421 1223355667788999999987652100011112223333 7999999999987632 2222 23
Q ss_pred ---CCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCC-cCCcEEEcCCCCcCc----ccccccc
Q 047461 80 ---EKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL-NKLVTLNLRGSKSLK----SLPSGIF 151 (312)
Q Consensus 80 ---~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~l~ 151 (312)
++|++|++++|.+....... +.. .+..+ ++|+.|++++|.+.+ .++..+.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~--------------------l~~--~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRL--------------------LAK--GLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred hccCcccEEEeeCCccchHHHHH--------------------HHH--HHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 45999999998876321110 000 22233 578888888887653 2333455
Q ss_pred CCCcCcEEeccCCCCCCC-CCcc---c--cCCCCeEEcCCccccc-----chHHHHhcCCCCEEecCCCCCCCcCchhhh
Q 047461 152 NLEFLTKLDLSGCSKLKR-LPEI---S--SGNISWLFLRGIAIEE-----LPSSIERLLRLGYLDLSDCKRLKSLPSSLY 220 (312)
Q Consensus 152 ~~~~L~~L~l~~~~~l~~-~p~~---~--~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 220 (312)
.+++|++|++++|..... ++.. . .++|++|++++|.++. +...+..+++|++|++++|.+.+.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 667888888888653321 1111 1 2488899998888763 344566788999999999987653222222
Q ss_pred -----cCCCCCeEeccCCCCCC----cchhhhhCCCCCcEEeccCCCCccc-----chHhhcc-CCCcEEEecCCcC
Q 047461 221 -----RLKSLGVLSLCGCSNLQ----RLPECLGQLSSPITFNLAKTNIERI-----PESIIQL-FVSGYLLLSYGIV 282 (312)
Q Consensus 221 -----~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~l~~~-----~~~l~~~-~~L~~L~l~~n~~ 282 (312)
..+.|+.|++++|.+.. .+...+..+++|+.+++++|.++.- ...+... +.++++++.+|++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 13789999999998763 3456666778999999999999832 2344444 6899999988763
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-15 Score=128.39 Aligned_cols=265 Identities=17% Similarity=0.105 Sum_probs=142.1
Q ss_pred EEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCC-CCCCCCCCcc--CcCC
Q 047461 6 EGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLKSLPSNL--SAEK 81 (312)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~-~~~~~~~~~~--~l~~ 81 (312)
-+|.||.+. .-..++++|+.+++||.|++++|.+ ...-+..+.. .++.+|.+.+ |+++++|... ++..
T Consensus 70 veirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~I------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 70 VEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNI------SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred eEEEeccCC--cccCChhhccchhhhceecccccch------hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 355555554 3455668899999999999999875 2333444444 5555555555 7888888754 7888
Q ss_pred ccEEeCCCCcccchh-hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc------------cccc
Q 047461 82 LMLLEVPDSDIKRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK------------SLPS 148 (312)
Q Consensus 82 L~~L~l~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~ 148 (312)
++.|.+.-|++..++ +.+..++++..|+.... ....++. .++..+..++++.+..|.+.- ..|.
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn--~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDN--KIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccch--hhhhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 888888888888665 56778888875443321 1233322 145566777777777765321 1222
Q ss_pred cccCCCcCcEEeccCCCCCCCCCccc-cCCCCeE--EcC-Ccccc-cch-HHHHhcCCCCEEecCCCCCCCcCchhhhcC
Q 047461 149 GIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWL--FLR-GIAIE-ELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRL 222 (312)
Q Consensus 149 ~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L--~l~-~~~l~-~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 222 (312)
+++++.-..-..+.. ......+.-. ...++.+ .+. .+... .-| ..++.+++|+.|++++|+++..-+.+|...
T Consensus 219 etsgarc~~p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYY-KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred hcccceecchHHHHH-HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 222222111111111 0011010000 0011111 011 11111 112 235556666666666666666555566666
Q ss_pred CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcC
Q 047461 223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
..++.|.+..|.+-..--..|.++..|+.|++.+|+|+ -.|..+....+|.+|.+-.|++
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66666666665543333344556666666666666666 3344555566666666666555
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=1.3e-13 Score=116.63 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=76.1
Q ss_pred CCCcCc-hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCCccccc
Q 047461 211 RLKSLP-SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVEDTLRI 288 (312)
Q Consensus 211 ~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~ 288 (312)
.....| ..|+.++.|+++++++|.+.+--+.+|.+...+++|.+..|++..+. ..+..+..|+.|+|++|+++...+
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~- 339 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP- 339 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-
Confidence 334444 36889999999999999988888889999999999999999998554 467889999999999999975333
Q ss_pred cccCCCCchhHHHhhhcceeeec
Q 047461 289 QHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.-++.+-.+.-+....++|.|.|
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred ccccccceeeeeehccCcccCcc
Confidence 22334444544455566666665
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=6.8e-13 Score=117.07 Aligned_cols=206 Identities=23% Similarity=0.329 Sum_probs=156.5
Q ss_pred eeCCCCCCCCCCcc---CcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461 64 HWHGYPLKSLPSNL---SAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR 138 (312)
Q Consensus 64 ~l~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (312)
.|++-+++.+|... .+..-...+++.|.+..+|...+.+..|+ .|+.+. +..++. .++.+..|..|+++
T Consensus 56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~----~r~ip~--~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 56 LLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC----IRTIPE--AICNLEALTFLDLS 129 (722)
T ss_pred ccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc----ceecch--hhhhhhHHHHhhhc
Confidence 34444455555433 56666788999999999998888888888 445444 556666 78888999999999
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP 216 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (312)
.|+ ...+|..+..++ |+.|.++. +.++.+|.-. ...+..|+.+.|.+..+|..++++.+|+.|.+..|.. -.+|
T Consensus 130 ~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp 205 (722)
T KOG0532|consen 130 SNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLP 205 (722)
T ss_pred cch-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCC
Confidence 998 667777776666 88888888 5566666443 4677888889999999999999999999998888775 4456
Q ss_pred hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhh---ccCCCcEEEecCCc
Q 047461 217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESII---QLFVSGYLLLSYGI 281 (312)
Q Consensus 217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~---~~~~L~~L~l~~n~ 281 (312)
..+..++ |..||+++|+ ...+|..|.++..|++|-|.+|.++.-|..+. ...-.++|+..-|+
T Consensus 206 ~El~~Lp-Li~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 206 EELCSLP-LIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHhCCc-eeeeecccCc-eeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 6676664 8889998754 56788899999999999999999987777653 45556888888884
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=1.2e-13 Score=121.75 Aligned_cols=190 Identities=26% Similarity=0.300 Sum_probs=151.3
Q ss_pred EeCCCCcccchhhhcccCCCch-----hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEE
Q 047461 85 LEVPDSDIKRLWDCVKHYSKLN-----QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKL 159 (312)
Q Consensus 85 L~l~~~~~~~~~~~~~~l~~L~-----~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 159 (312)
|.|++-.++.+|.+-.. +.|. +++.+. ..++|. .+..+..|+.+.+..|. ...+|..+..+..|+++
T Consensus 55 l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR----~~elp~--~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l 126 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNR----FSELPE--EACAFVSLESLILYHNC-IRTIPEAICNLEALTFL 126 (722)
T ss_pred cccccchhhcCCCcccc-ccccchhhhhccccc----cccCch--HHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHh
Confidence 44555555555543333 4444 566666 455665 67778889999999887 66777778899999999
Q ss_pred eccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCc
Q 047461 160 DLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR 238 (312)
Q Consensus 160 ~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 238 (312)
+++. +.+..+|.-. ..-|++|-+++|+++.+|..++....|..||.+.|++ ..+|..++.+.+|+.+.++.|+. ..
T Consensus 127 ~ls~-NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l-~~ 203 (722)
T KOG0532|consen 127 DLSS-NQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHL-ED 203 (722)
T ss_pred hhcc-chhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhh-hh
Confidence 9999 5566666443 4678999999999999999999888999999999885 45677799999999999999765 55
Q ss_pred chhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccc
Q 047461 239 LPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~ 286 (312)
+|..++.++ |..||++.|+++.+|.++.+++.|++|.|++|++...+
T Consensus 204 lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 204 LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 777777554 99999999999999999999999999999999996543
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.2e-12 Score=110.54 Aligned_cols=177 Identities=18% Similarity=0.120 Sum_probs=121.1
Q ss_pred CcCCCcCCcEEEcCCCCcCcccc--ccccCCCcCcEEeccCCCCCCCCCcc---ccCCCCeEEcCCcccc--cchHHHHh
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLP--SGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLFLRGIAIE--ELPSSIER 197 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~--~l~~~~~~ 197 (312)
....|+.++.|++++|-+....+ .....+++|+.|+++.|......... ...+++.|.+.+|+++ ++-..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 45678889999999886544322 23456888999999886433221111 1468889999999888 35555677
Q ss_pred cCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcc-hhhhhCCCCCcEEeccCCCCc--ccchH-----hhcc
Q 047461 198 LLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRL-PECLGQLSSPITFNLAKTNIE--RIPES-----IIQL 269 (312)
Q Consensus 198 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~--~~~~~-----l~~~ 269 (312)
+++|+.|++..|...........-+..|+.|+|++|++...- -.....++.|..|+++.|.++ ..|++ ...+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 889999999888543333333444567888999888765421 133457788888888888887 44443 3567
Q ss_pred CCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461 270 FVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE 301 (312)
Q Consensus 270 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 301 (312)
++|++|++..|++.++....++..++.+..+.
T Consensus 301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccceeeecccCccccccccchhhccchhhhhh
Confidence 88999999999888877777766666665543
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=5.1e-11 Score=92.89 Aligned_cols=83 Identities=23% Similarity=0.125 Sum_probs=20.8
Q ss_pred CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEecc
Q 047461 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLA 255 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~ 255 (312)
+++.|++++|+++.+. .+..++.|+.|++++|++....+.....+++|+.|++++|.+... --..+..+++|+.|++.
T Consensus 43 ~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 43 KLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp T--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred CCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 4445555555544443 233344455555555443332111112344455555544443220 11233344444445544
Q ss_pred CCCCc
Q 047461 256 KTNIE 260 (312)
Q Consensus 256 ~n~l~ 260 (312)
+|+++
T Consensus 122 ~NPv~ 126 (175)
T PF14580_consen 122 GNPVC 126 (175)
T ss_dssp T-GGG
T ss_pred CCccc
Confidence 44444
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1.5e-11 Score=102.74 Aligned_cols=107 Identities=20% Similarity=0.126 Sum_probs=80.9
Q ss_pred CCCCeEEcCCccccc-----chHHHHhcCCCCEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCcchhhh---
Q 047461 176 GNISWLFLRGIAIEE-----LPSSIERLLRLGYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQRLPECL--- 243 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~--- 243 (312)
+.|+.+.+..|.|.. +...+..+++|+.|||.+|.++. .+...+..++.|+.++++.|.+...-...+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 466677777766552 34567789999999999987654 345567788999999999998875433322
Q ss_pred --hCCCCCcEEeccCCCCc-----ccchHhhccCCCcEEEecCCcC
Q 047461 244 --GQLSSPITFNLAKTNIE-----RIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 244 --~~l~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
...++|++|.+.+|.++ .+..++...+.|..|+|++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 24689999999999987 2333556789999999999998
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=1.3e-10 Score=95.44 Aligned_cols=126 Identities=22% Similarity=0.212 Sum_probs=91.7
Q ss_pred CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
.|+.+++++|.++.+-..+.-.+.++.|++++|.+.... .+..+++|+.||+++|.+ .++..+-.++.+.+.|.++.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhh
Confidence 577888888888887777777788888888888765432 266788888888888654 33334444667788888888
Q ss_pred CCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcc
Q 047461 257 TNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEV 306 (312)
Q Consensus 257 n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (312)
|.+..+ ..++.+-+|.+|++++|++......+++..+|.++++....++
T Consensus 362 N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 362 NKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 877655 4467778888888888888777777777778887776554443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=7.1e-11 Score=97.01 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA 255 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 255 (312)
++++.|+++.|++..+.. +..+++|+.||+++|.+... ...-..+.+.++|.++.|.+ ..+ ..+.++-+|..||++
T Consensus 307 Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~i-E~L-SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKI-ETL-SGLRKLYSLVNLDLS 382 (490)
T ss_pred cceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhH-hhh-hhhHhhhhheecccc
Confidence 455555555555554433 55566666666666553332 22223455566666665432 111 233445566666666
Q ss_pred CCCCcccc--hHhhccCCCcEEEecCCcCCc
Q 047461 256 KTNIERIP--ESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 256 ~n~l~~~~--~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+|+|..+. ..++++|.|+.+.+.+|++.+
T Consensus 383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 66665322 346666777777777766643
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=5.1e-10 Score=87.30 Aligned_cols=81 Identities=30% Similarity=0.281 Sum_probs=20.7
Q ss_pred CCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHH-HhcCCCCEEecCCCCCCCc-CchhhhcCCCCCeEe
Q 047461 153 LEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKS-LPSSLYRLKSLGVLS 229 (312)
Q Consensus 153 ~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~ 229 (312)
+.+|+.|++++| .+..++... ...|+.|++++|.++++...+ ..+++|+.|++++|++... ....++.+++|+.|+
T Consensus 41 l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCC-CCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 444455555542 222222222 234455555555554443322 2344555555554444221 112344444455555
Q ss_pred ccCCC
Q 047461 230 LCGCS 234 (312)
Q Consensus 230 l~~~~ 234 (312)
+.+|.
T Consensus 120 L~~NP 124 (175)
T PF14580_consen 120 LEGNP 124 (175)
T ss_dssp -TT-G
T ss_pred ccCCc
Confidence 54443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=6.1e-10 Score=99.75 Aligned_cols=153 Identities=37% Similarity=0.441 Sum_probs=103.2
Q ss_pred CCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--ccCCCCeEEcCCcccccchHHHHhcCCCCEEecCC
Q 047461 131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSD 208 (312)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~ 208 (312)
+|+.|++++|. ...+|..+..++.|+.|+++.| .+..+|.. ....++.|++++|.++.+|........|+++.+++
T Consensus 141 nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 67777777776 5555444667777777777774 34444443 24677788888888888877665666678888877
Q ss_pred CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461 209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI 288 (312)
Q Consensus 209 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 288 (312)
|.... .+..+..+.++..+.+.+|.+ ..++..+..+++++.|++++|.++.++. ++...+++.|+++++.+....+.
T Consensus 219 N~~~~-~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 219 NSIIE-LLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred Cccee-cchhhhhcccccccccCCcee-eeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 75333 334456667777777665443 3335666777778888888888887666 77778888888888877654333
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.3e-11 Score=100.71 Aligned_cols=203 Identities=18% Similarity=0.170 Sum_probs=100.5
Q ss_pred cCCccEEeCCCCcccchhh--hcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccc-cCC
Q 047461 79 AEKLMLLEVPDSDIKRLWD--CVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGI-FNL 153 (312)
Q Consensus 79 l~~L~~L~l~~~~~~~~~~--~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~ 153 (312)
++.|+.+.+.++.+...+. -...|++++ +|+.+-+.++ ..+.. -...+|+|+.|+++.|.+.-...... ..+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~--i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLK--IAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHH--HHHhcccchhcccccccccCCccccchhhh
Confidence 4445555555555443331 234455555 3333333322 11111 22345566666666665322211111 135
Q ss_pred CcCcEEeccCCCCCCC-CCcc--ccCCCCeEEcCCc-ccccchHHHHhcCCCCEEecCCCCCCCcC-chhhhcCCCCCeE
Q 047461 154 EFLTKLDLSGCSKLKR-LPEI--SSGNISWLFLRGI-AIEELPSSIERLLRLGYLDLSDCKRLKSL-PSSLYRLKSLGVL 228 (312)
Q Consensus 154 ~~L~~L~l~~~~~l~~-~p~~--~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L 228 (312)
++|+.|.++.|..... +-.. .++.++.|++.+| .+..-...-..+..|+.|||++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 5666666666543210 0000 0356666666666 22211111222345667777776654421 1235566667777
Q ss_pred eccCCCCCC-cchhh-----hhCCCCCcEEeccCCCCcccc--hHhhccCCCcEEEecCCcCCc
Q 047461 229 SLCGCSNLQ-RLPEC-----LGQLSSPITFNLAKTNIERIP--ESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 229 ~l~~~~~~~-~~p~~-----~~~l~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l~~n~~~~ 284 (312)
.++.|.+.. ..|+. ...+++|+.|++..|++...+ ..+..+++|+.|.+..|++..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 766665432 22222 345677888888888876443 346667777777777777643
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.95 E-value=3.7e-09 Score=99.59 Aligned_cols=106 Identities=27% Similarity=0.304 Sum_probs=95.1
Q ss_pred CCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 178 ISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 178 L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
++.|+|.+|.++ .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678999999888 5888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc-ccchHhhcc-CCCcEEEecCCcCC
Q 047461 257 TNIE-RIPESIIQL-FVSGYLLLSYGIVE 283 (312)
Q Consensus 257 n~l~-~~~~~l~~~-~~L~~L~l~~n~~~ 283 (312)
|.++ .+|..++.. .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 9998 888887653 46778899988653
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.6e-09 Score=97.04 Aligned_cols=187 Identities=27% Similarity=0.347 Sum_probs=117.1
Q ss_pred EeeCCCCC-CCCCCccCcCCccEEeCCCCcccchhhhcccCC-Cchh--cchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461 63 LHWHGYPL-KSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS-KLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLR 138 (312)
Q Consensus 63 L~l~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (312)
+....+.+ .........+.++.+++.++.+..++....... +|+. ++.+. +..++. .++.++.|+.|+++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~----i~~l~~--~~~~l~~L~~L~l~ 171 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK----IESLPS--PLRNLPNLKNLDLS 171 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc----hhhhhh--hhhccccccccccC
Confidence 45555544 333333355667777777777777666655553 6663 33333 333333 56677777888887
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--ccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP 216 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (312)
+|. ...+|......+.|+.|++++ +.+..+|.. ....|+.+.+++|.+...+..+..+.++..+.+.+|++.. ++
T Consensus 172 ~N~-l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 172 FND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LP 248 (394)
T ss_pred Cch-hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-cc
Confidence 777 555565444677777777777 445556654 2345777777777666666666677777777766665433 24
Q ss_pred hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
..++.+++++.|++++|.+.. ++. +..+.+++.|+++++.++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceeccccccccc-ccc-ccccCccCEEeccCcccc
Confidence 556677778888887765433 332 667777888888877765
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=6.5e-10 Score=93.04 Aligned_cols=207 Identities=16% Similarity=0.114 Sum_probs=139.7
Q ss_pred CcCCccEEeCCCCccc-----chhhhcccCCCch--hcchhhcccccccCCC-----CCCcCCCcCCcEEEcCCCCcCcc
Q 047461 78 SAEKLMLLEVPDSDIK-----RLWDCVKHYSKLN--QIIHAACHKLIAKIPN-----PTLMPRLNKLVTLNLRGSKSLKS 145 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~ 145 (312)
.+..++.+++++|.+. .+...+...++|+ +++.-.......++|. ...+..+++|++|++|+|.+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4566777777777765 2333455556666 3332222222222211 11455677999999999987655
Q ss_pred ccc----cccCCCcCcEEeccCCCCCCC-----------C---Ccc-ccCCCCeEEcCCcccccch-----HHHHhcCCC
Q 047461 146 LPS----GIFNLEFLTKLDLSGCSKLKR-----------L---PEI-SSGNISWLFLRGIAIEELP-----SSIERLLRL 201 (312)
Q Consensus 146 ~~~----~l~~~~~L~~L~l~~~~~l~~-----------~---p~~-~~~~L~~L~l~~~~l~~l~-----~~~~~l~~L 201 (312)
.+. .+.+...|++|.+.+|..-.. + ... ..++|+++...+|.+..-+ ..+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 444 345678899999999753211 0 000 1368999999999887543 446677899
Q ss_pred CEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCc-c----cchHh-h
Q 047461 202 GYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIE-R----IPESI-I 267 (312)
Q Consensus 202 ~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~-~----~~~~l-~ 267 (312)
+.+.+..|.+.. .+...+..++.|+.|++.+|.+... +...++.+++|+.|++++|.+. . +...+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 999999987643 2445688899999999999877643 4566778899999999999987 2 22222 3
Q ss_pred ccCCCcEEEecCCcCCc
Q 047461 268 QLFVSGYLLLSYGIVED 284 (312)
Q Consensus 268 ~~~~L~~L~l~~n~~~~ 284 (312)
..|+|+.|.+.+|.+..
T Consensus 268 ~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITR 284 (382)
T ss_pred cCCCCceeccCcchhHH
Confidence 57899999999999864
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.77 E-value=1.9e-08 Score=94.88 Aligned_cols=88 Identities=24% Similarity=0.310 Sum_probs=82.5
Q ss_pred CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecC
Q 047461 201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSY 279 (312)
Q Consensus 201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~ 279 (312)
++.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++ .+|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678999999999999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred CcCCccccc
Q 047461 280 GIVEDTLRI 288 (312)
Q Consensus 280 n~~~~~~~~ 288 (312)
|.+.+..+.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 999876654
No 37
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=1.2e-10 Score=99.56 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=107.5
Q ss_pred CCCcCcEEeccCCCCCCCCCccc----cCCCCeEEcCCc-ccccch--HHHHhcCCCCEEecCCCCCCCc--CchhhhcC
Q 047461 152 NLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFLRGI-AIEELP--SSIERLLRLGYLDLSDCKRLKS--LPSSLYRL 222 (312)
Q Consensus 152 ~~~~L~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~-~l~~l~--~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l 222 (312)
....|+.|+.++|...++.+... ..+|+++-+.++ ++++.- ..-.+++.|+.+++..+....+ +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 35677888888877666544332 367888888877 344332 2234677899999887755432 23333467
Q ss_pred CCCCeEeccCCCCCCcc-----hhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCCcCCcccccccc-CCC
Q 047461 223 KSLGVLSLCGCSNLQRL-----PECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGIVEDTLRIQHT-NHT 294 (312)
Q Consensus 223 ~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~ 294 (312)
+.|+.+.+++|.....- ...-+....|+.+.+++++++ ..-+.+..+++|+.+++.+|......++..+ +++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88999999998654322 334456788999999999876 4556788999999999999988666665555 569
Q ss_pred CchhHHHhhhc
Q 047461 295 PAVRWQEIWQE 305 (312)
Q Consensus 295 ~~~~~~~~~~~ 305 (312)
|.+++..++.+
T Consensus 452 p~i~v~a~~a~ 462 (483)
T KOG4341|consen 452 PNIKVHAYFAP 462 (483)
T ss_pred ccceehhhccC
Confidence 99888776443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=3.2e-08 Score=63.48 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=29.9
Q ss_pred CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCc
Q 047461 224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGI 281 (312)
Q Consensus 224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~ 281 (312)
+|++|++++|.+..-.+..|.++++|+.|++++|.++.++ ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555554433333344555555555555555555433 244555556666655554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=3.9e-08 Score=63.05 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=53.0
Q ss_pred CCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461 199 LRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI 259 (312)
Q Consensus 199 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l 259 (312)
++|++|++++|++...-+..+..+++|++|++++|.+..-.|..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999987766667888999999999999888766677899999999999999975
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=7.5e-08 Score=93.23 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=58.4
Q ss_pred CcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCccc-chhh
Q 047461 21 NSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIK-RLWD 97 (312)
Q Consensus 21 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~-~~~~ 97 (312)
..+.|..|+.|++|++++|. ....+|..++. .+||+|++++..+..+|..+ .++.|.+|++..+... .++.
T Consensus 563 s~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred CHHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc
Confidence 33557788888888888755 55677777777 88888888888888888776 7778888888776533 3334
Q ss_pred hcccCCCchhc
Q 047461 98 CVKHYSKLNQI 108 (312)
Q Consensus 98 ~~~~l~~L~~l 108 (312)
....+++|+.|
T Consensus 637 i~~~L~~Lr~L 647 (889)
T KOG4658|consen 637 ILLELQSLRVL 647 (889)
T ss_pred hhhhcccccEE
Confidence 44556777643
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=1.2e-08 Score=93.27 Aligned_cols=108 Identities=21% Similarity=0.166 Sum_probs=51.5
Q ss_pred CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchh-hhhCCCCCcEEecc
Q 047461 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNLA 255 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~ 255 (312)
+|...+++.|.+..+-..+.-++-++.|+|++|++.... .+..++.|++|||+.|.+.. +|. ...++. |..|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeeeec
Confidence 344444445555444444444555555666655543332 34555556666665544322 111 111222 5555555
Q ss_pred CCCCcccchHhhccCCCcEEEecCCcCCcccccc
Q 047461 256 KTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQ 289 (312)
Q Consensus 256 ~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 289 (312)
+|.++.+ ..+.++++|+.||+++|-+.+...+.
T Consensus 241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~ 273 (1096)
T KOG1859|consen 241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELE 273 (1096)
T ss_pred ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhh
Confidence 5555544 23455555555555555555443333
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.46 E-value=1.7e-07 Score=90.73 Aligned_cols=100 Identities=22% Similarity=0.365 Sum_probs=65.8
Q ss_pred CCccEEeeCCCC--CCCCCCc-c-CcCCccEEeCCCC-cccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCc
Q 047461 58 AEVKYLHWHGYP--LKSLPSN-L-SAEKLMLLEVPDS-DIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLN 130 (312)
Q Consensus 58 ~~L~~L~l~~~~--~~~~~~~-~-~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~ 130 (312)
++|++|-+.++. +..++.. | .++.|++||+++| .+..+|..++.+-+|+ +++.+. +..+|. .++++.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~----I~~LP~--~l~~Lk 618 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG----ISHLPS--GLGNLK 618 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC----ccccch--HHHHHH
Confidence 567777777765 4555543 2 6778888888765 3557777777777777 444444 445666 777777
Q ss_pred CCcEEEcCCCCcCccccccccCCCcCcEEeccC
Q 047461 131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSG 163 (312)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 163 (312)
.|.+|++.++.....+|.....+++|++|.+..
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeec
Confidence 778887777665555544444577777777765
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=1.8e-08 Score=90.74 Aligned_cols=152 Identities=25% Similarity=0.247 Sum_probs=71.6
Q ss_pred cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHH-HHhcCCCCE
Q 047461 126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSS-IERLLRLGY 203 (312)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~ 203 (312)
+..+++|++|++++|. ++.+.. +..++.|+.|++++| .+..+.... ...++.+++++|.+..+... ...+.+++.
T Consensus 114 l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGN-LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhhcchheeccccc-cccccc-hhhccchhhheeccC-cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence 4445566666666665 333322 445555666666663 333333332 34566666666666655443 345556666
Q ss_pred EecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC--CCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461 204 LDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS--SPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI 281 (312)
Q Consensus 204 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~--~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~ 281 (312)
+++.+|.+...-. +..+..+..+++..|.+...-+ +..+. .|+.+++++|++..++..+..+..+..+++.+|.
T Consensus 191 l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 191 LDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred HhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 6666654432211 1111122222333332221100 00111 2556666666665544445555666666666665
Q ss_pred CCc
Q 047461 282 VED 284 (312)
Q Consensus 282 ~~~ 284 (312)
+..
T Consensus 267 ~~~ 269 (414)
T KOG0531|consen 267 ISN 269 (414)
T ss_pred ccc
Confidence 543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.2e-08 Score=84.04 Aligned_cols=177 Identities=19% Similarity=0.131 Sum_probs=84.9
Q ss_pred CccEEeCCCCccc--chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccc--cccCCCcC
Q 047461 81 KLMLLEVPDSDIK--RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPS--GIFNLEFL 156 (312)
Q Consensus 81 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L 156 (312)
.++++|++...++ ++-..+..|.+|+.|+.-... +...+.. .++...+|+.|+++.|.-.+.... .+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHH--HHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 3777777777666 232334555566544433211 1111222 445556677777777654443221 24456677
Q ss_pred cEEeccCCCCCCCCCccc----cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccC
Q 047461 157 TKLDLSGCSKLKRLPEIS----SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCG 232 (312)
Q Consensus 157 ~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 232 (312)
..|++++|-.....-... .+++..|+++++.-. -....+.--...+++|..||+++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--------------------l~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--------------------LQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--------------------hhhhHHHHHHHhCCceeeecccc
Confidence 777777765433211100 134444444443100 00011122233455555555555
Q ss_pred CCCC-CcchhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCC
Q 047461 233 CSNL-QRLPECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYG 280 (312)
Q Consensus 233 ~~~~-~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n 280 (312)
|... ......+.+++.|++|.++.|+.- ..--.+...|+|.+|++.+|
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5322 233344555666666666666532 11113456677777777766
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=9.1e-07 Score=52.24 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=30.8
Q ss_pred CCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcccc
Q 047461 247 SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLR 287 (312)
Q Consensus 247 ~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 287 (312)
++|++|++++|+|+.+|+.++.+++|+.|++++|++.+..+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46788888888888888778888888888888888775443
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=4e-06 Score=73.64 Aligned_cols=109 Identities=30% Similarity=0.491 Sum_probs=52.9
Q ss_pred CCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccc---cchHHHHhcCCCCEEecC
Q 047461 131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIE---ELPSSIERLLRLGYLDLS 207 (312)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~ 207 (312)
+|++|.+++|.-...+|..+ .++|++|.+++|..+..+| ..|+.|++..+... .+|. +|+.|.+.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~ 140 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLEIKGSATDSIKNVPN------GLTSLSIN 140 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----cccceEEeCCCCCcccccCcc------hHhheecc
Confidence 46666666655445555433 2456666666654444444 35566665544332 2332 34455443
Q ss_pred CCCCC--CcCchhhhcC-CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461 208 DCKRL--KSLPSSLYRL-KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT 257 (312)
Q Consensus 208 ~n~~~--~~~~~~l~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n 257 (312)
+++.. ..++. .+ ++|++|++++|.... +|+.+. .+|+.|.++.+
T Consensus 141 ~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 141 SYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccccccccccc---ccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 22110 11111 12 357777777765432 232221 46777777665
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=3.5e-08 Score=90.27 Aligned_cols=170 Identities=22% Similarity=0.226 Sum_probs=82.3
Q ss_pred cCcCCccEEeCCCCcccchhhhccc-------------CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcC
Q 047461 77 LSAEKLMLLEVPDSDIKRLWDCVKH-------------YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSL 143 (312)
Q Consensus 77 ~~l~~L~~L~l~~~~~~~~~~~~~~-------------l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 143 (312)
+.+..|++|.++++.+.+. .++.. +..|+++.... .+++.. -..+..|...+.++|. +
T Consensus 106 fpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~asc----ggd~~n---s~~Wn~L~~a~fsyN~-L 176 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASC----GGDISN---SPVWNKLATASFSYNR-L 176 (1096)
T ss_pred ccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHh----cccccc---chhhhhHhhhhcchhh-H
Confidence 3678899999999888753 22111 11111211111 111111 1113457777777776 5
Q ss_pred ccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCch-hhhcC
Q 047461 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS-SLYRL 222 (312)
Q Consensus 144 ~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l 222 (312)
..+..++.-++.+++|++++|. +++.- .+..++.|++|||++|.+.. +|. ....+
T Consensus 177 ~~mD~SLqll~ale~LnLshNk----------------------~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc 232 (1096)
T KOG1859|consen 177 VLMDESLQLLPALESLNLSHNK----------------------FTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC 232 (1096)
T ss_pred HhHHHHHHHHHHhhhhccchhh----------------------hhhhH-HHHhcccccccccccchhcc-ccccchhhh
Confidence 5555556566777777777743 22221 23344455555555544321 221 00111
Q ss_pred CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc--hHhhccCCCcEEEecCCcC
Q 047461 223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP--ESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l~~n~~ 282 (312)
.|+.|.+++|.+..-. .+.++.+|+.||+++|-|.... ..++.+..|+.|.|.+|++
T Consensus 233 -~L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 233 -KLQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hheeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 2555555554332211 2335555566666665554222 2344555566666666655
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=1.4e-06 Score=71.17 Aligned_cols=205 Identities=13% Similarity=0.096 Sum_probs=122.1
Q ss_pred CcCCccEEeCCCCcccc-----hhhhcccCCCch--hcchhhcccc-------cccCCCCCCcCCCcCCcEEEcCCCCcC
Q 047461 78 SAEKLMLLEVPDSDIKR-----LWDCVKHYSKLN--QIIHAACHKL-------IAKIPNPTLMPRLNKLVTLNLRGSKSL 143 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~--~l~~~~~~~~-------~~~~~~~~~~~~l~~L~~L~l~~~~~~ 143 (312)
.+..+..+++++|.+.. +...+..-.+|+ +++....... ..-+.. .+..||+|+.+++|.|.+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~--aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLK--ALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHH--HHhcCCcceeeeccccccC
Confidence 45667777777777662 223344445555 2222221111 111112 5567889999999999876
Q ss_pred cccccc----ccCCCcCcEEeccCCCCCCCCCc---------------c-ccCCCCeEEcCCcccccchH-----HHHhc
Q 047461 144 KSLPSG----IFNLEFLTKLDLSGCSKLKRLPE---------------I-SSGNISWLFLRGIAIEELPS-----SIERL 198 (312)
Q Consensus 144 ~~~~~~----l~~~~~L~~L~l~~~~~l~~~p~---------------~-~~~~L~~L~l~~~~l~~l~~-----~~~~l 198 (312)
...|+. +++-+.|++|.+++|. ++.+.. . ..+.|++...+.|++...+. .+...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 666553 4566789999998864 322110 0 02578888888887775432 23334
Q ss_pred CCCCEEecCCCCCCCc-----CchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCc--ccchHhh
Q 047461 199 LRLGYLDLSDCKRLKS-----LPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIE--RIPESII 267 (312)
Q Consensus 199 ~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~ 267 (312)
.+|+.+.+.+|.+... +-..++.+.+|+.|++.+|.++.. +...++.++.|+.|.+..|-++ .....+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 5778888887765432 112345667888888888766532 3445566777888888888776 2222222
Q ss_pred -----ccCCCcEEEecCCcCCcc
Q 047461 268 -----QLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 268 -----~~~~L~~L~l~~n~~~~~ 285 (312)
..|+|..|-..+|...+.
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HhhhhcCCCccccccchhhhcCc
Confidence 357777777888776553
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=3.1e-07 Score=75.85 Aligned_cols=170 Identities=19% Similarity=0.165 Sum_probs=116.9
Q ss_pred CCcEEEcCCCCcCcc-ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCc-cccc--chHHHHhcCCCCEE
Q 047461 131 KLVTLNLRGSKSLKS-LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGI-AIEE--LPSSIERLLRLGYL 204 (312)
Q Consensus 131 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L 204 (312)
.|+++|+++..+... +-..++.+.+|+.|.+.++..-..+-... ..+|+.++++.+ ++++ +.-.+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 599999998654322 22234567788888887743322221111 257999999876 6664 33457789999999
Q ss_pred ecCCCCCCCcCch-hhhc-CCCCCeEeccCCCC--C-CcchhhhhCCCCCcEEeccCCC-Cc-ccchHhhccCCCcEEEe
Q 047461 205 DLSDCKRLKSLPS-SLYR-LKSLGVLSLCGCSN--L-QRLPECLGQLSSPITFNLAKTN-IE-RIPESIIQLFVSGYLLL 277 (312)
Q Consensus 205 ~l~~n~~~~~~~~-~l~~-l~~L~~L~l~~~~~--~-~~~p~~~~~l~~L~~L~l~~n~-l~-~~~~~l~~~~~L~~L~l 277 (312)
++++|........ .+.. -+.|..|+++++.- . ..+..-..++++|.+||++.|. ++ .+-..+.+++.|++|++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 9999976654321 1111 23688999998732 2 2344445688999999999875 55 55567789999999999
Q ss_pred cCCcCCccccccccCCCCchhHH
Q 047461 278 SYGIVEDTLRIQHTNHTPAVRWQ 300 (312)
Q Consensus 278 ~~n~~~~~~~~~~~~~~~~~~~~ 300 (312)
+.|........-++...|.+..+
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEE
Confidence 99999877777777777776543
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=6.8e-07 Score=80.54 Aligned_cols=167 Identities=25% Similarity=0.266 Sum_probs=113.6
Q ss_pred CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCE
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGY 203 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 203 (312)
.++.+.+|+.|++.+|. +..+...+..+++|++|++++| .+..+.... ...|+.|++.+|.++.+.. +..+..|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccc-hhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 46778899999999998 4444443668999999999994 455555444 5679999999999987743 334788999
Q ss_pred EecCCCCCCCcCc-hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccC--CCcEEEecCC
Q 047461 204 LDLSDCKRLKSLP-SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLF--VSGYLLLSYG 280 (312)
Q Consensus 204 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~--~L~~L~l~~n 280 (312)
+++++|.+...-+ . ...+.+++.+.+.+|.+...- .+..+..+..+++..|.++.+-. +.... .|+.+++++|
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGN 242 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccC
Confidence 9999998765443 2 467888999999887553321 22233445555888888874422 22233 3899999999
Q ss_pred cCCcc-ccccccCCCCchh
Q 047461 281 IVEDT-LRIQHTNHTPAVR 298 (312)
Q Consensus 281 ~~~~~-~~~~~~~~~~~~~ 298 (312)
++... ..+..+..++.+.
T Consensus 243 ~i~~~~~~~~~~~~l~~l~ 261 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLD 261 (414)
T ss_pred ccccccccccccccccccc
Confidence 88765 3344333444433
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=6.7e-07 Score=73.90 Aligned_cols=131 Identities=14% Similarity=0.032 Sum_probs=64.8
Q ss_pred cCCcEEEcCCCCcCcc-ccccccCCCcCcEEeccCCCCC-----CCCCccccCCCCeEEcCCcccccc---hHHHHhcCC
Q 047461 130 NKLVTLNLRGSKSLKS-LPSGIFNLEFLTKLDLSGCSKL-----KRLPEISSGNISWLFLRGIAIEEL---PSSIERLLR 200 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l-----~~~p~~~~~~L~~L~l~~~~l~~l---~~~~~~l~~ 200 (312)
.+|+.|.+.+..+... ....+..+|+++.|.++.|+.= ...-....+.++.+++..|..... -.....+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 3677777776654322 2233445666777766664210 000011124555666665543321 112234566
Q ss_pred CCEEecCCCCCCCcCc-hhhhcCCCCCeEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCc
Q 047461 201 LGYLDLSDCKRLKSLP-SSLYRLKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 201 L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
+..+-+..|.+.+.-. ...-.++.+..|+++.+++.. ...+.+.++++|..|.++++++.
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 6666666665433211 223344555556666554432 22345556666777777766654
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=6.8e-06 Score=77.90 Aligned_cols=150 Identities=24% Similarity=0.217 Sum_probs=90.6
Q ss_pred cCCcEEEcCCCCcC-ccccccccC-CCcCcEEeccCCCCCCC-CCcc--ccCCCCeEEcCCcccccchHHHHhcCCCCEE
Q 047461 130 NKLVTLNLRGSKSL-KSLPSGIFN-LEFLTKLDLSGCSKLKR-LPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYL 204 (312)
Q Consensus 130 ~~L~~L~l~~~~~~-~~~~~~l~~-~~~L~~L~l~~~~~l~~-~p~~--~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 204 (312)
.+|++|++++.... ...|..++. +|+|+.|.+++-..... +... .+++|..||+++.+++.+ .+++.+.+|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 47999999886533 334444554 78899998887332211 1111 146888888888888877 667777788777
Q ss_pred ecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCc------chhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEE
Q 047461 205 DLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQR------LPECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYL 275 (312)
Q Consensus 205 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~------~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L 275 (312)
.+.+-.+.. ..-..++++++|+.||+|.-..... .-+.-..+|.|+.||.+++.+. .+...+...|+|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 776544433 2233577788888888876432221 1122234677888888777766 232334556666655
Q ss_pred EecCC
Q 047461 276 LLSYG 280 (312)
Q Consensus 276 ~l~~n 280 (312)
..-+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 54433
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=1.7e-06 Score=63.39 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=54.8
Q ss_pred CeEEcCCcccccchHHHHh---cCCCCEEecCCCCCCCcCchhhhc-CCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461 179 SWLFLRGIAIEELPSSIER---LLRLGYLDLSDCKRLKSLPSSLYR-LKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL 254 (312)
Q Consensus 179 ~~L~l~~~~l~~l~~~~~~---l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 254 (312)
..+++++|.+..++..... ...|...++++|.+ .++|..+.. .+...++++.+|. ..++|..+..++.|+.|++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence 3444555544444433322 22344445666543 333433332 2345666666543 3445666666666666666
Q ss_pred cCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461 255 AKTNIERIPESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 255 ~~n~l~~~~~~l~~~~~L~~L~l~~n~~~ 283 (312)
+.|.+...|+.+..+.++-+|+..+|...
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 66666666666655666666666666553
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=5.9e-05 Score=66.43 Aligned_cols=132 Identities=23% Similarity=0.356 Sum_probs=77.3
Q ss_pred cCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcE
Q 047461 79 AEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTK 158 (312)
Q Consensus 79 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 158 (312)
+.+++.|++++|.++.+|. --.+|+.|....|.++ ..+|. .+. ++|++|.+++|.....+|. +|+.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nL-tsLP~--~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNL-TTLPG--SIP--EGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCc-ccCCc--hhh--hhhhheEccCccccccccc------ccce
Confidence 5678888888888887772 1224665555554442 33333 332 4789999998854555554 3666
Q ss_pred EeccCCC--CCCCCCccccCCCCeEEcCCccc---ccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461 159 LDLSGCS--KLKRLPEISSGNISWLFLRGIAI---EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC 233 (312)
Q Consensus 159 L~l~~~~--~l~~~p~~~~~~L~~L~l~~~~l---~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 233 (312)
|++..+. .+..+| +.|+.|.+.++.. ..+|.. -.++|++|++++|.... +|..+. .+|+.|.++.+
T Consensus 117 L~L~~n~~~~L~~LP----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVP----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCc----chHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 6666522 234444 5788887754321 112211 12478999998877432 333222 37888888764
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.8e-05 Score=46.65 Aligned_cols=40 Identities=33% Similarity=0.368 Sum_probs=25.4
Q ss_pred CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc
Q 047461 223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP 263 (312)
Q Consensus 223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 263 (312)
++|++|++++|.+. .+|..++++++|+.|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35677777776554 45656677777777777777776554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=7.7e-06 Score=77.54 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCcCcEEeccCCCCCCC-CCcc---ccCCCCeEEcCCcccc--cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC
Q 047461 153 LEFLTKLDLSGCSKLKR-LPEI---SSGNISWLFLRGIAIE--ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG 226 (312)
Q Consensus 153 ~~~L~~L~l~~~~~l~~-~p~~---~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 226 (312)
-.+|++|++++...... .|.. ..|.|+.|.+.+-.+. ++.....++++|..||++++.+... ..++.+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 35677777776433321 1111 1467777777765554 3444456677777777777665433 4566777777
Q ss_pred eEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCcccch-------HhhccCCCcEEEecCCcCCccccccccCCCCchh
Q 047461 227 VLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIERIPE-------SIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVR 298 (312)
Q Consensus 227 ~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~-------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 298 (312)
.|.+.+-.+.. .--..+..+++|++||+|..+....+. +-..+|.|+.||.++..+.+..-...+..-|+++
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 77776544332 223345567777777777755432221 1124677777777777665544433333334333
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=8.5e-06 Score=59.85 Aligned_cols=86 Identities=22% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCCEEecCCCCCCC--cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEe
Q 047461 200 RLGYLDLSDCKRLK--SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLL 277 (312)
Q Consensus 200 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l 277 (312)
.+-.++|+.|++.. +.+..+.....|...++++|.+.+-.+.....++.++.|++++|.|+.+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 35567888887643 3344455566788899999765443444445677899999999999999999999999999999
Q ss_pred cCCcCCcc
Q 047461 278 SYGIVEDT 285 (312)
Q Consensus 278 ~~n~~~~~ 285 (312)
+.|++...
T Consensus 108 ~~N~l~~~ 115 (177)
T KOG4579|consen 108 RFNPLNAE 115 (177)
T ss_pred ccCccccc
Confidence 99999653
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=6.2e-05 Score=59.02 Aligned_cols=82 Identities=23% Similarity=0.177 Sum_probs=40.8
Q ss_pred CCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc--hHhhccCCCcEEEe
Q 047461 200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP--ESIIQLFVSGYLLL 277 (312)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l 277 (312)
+...+|+++|.+... ..+..++.|.+|.+++|++..--|.--..+++|..|.+.+|.|..+. .-+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344555555543221 11334455555666555554433333334455666666666555332 22445666666666
Q ss_pred cCCcCC
Q 047461 278 SYGIVE 283 (312)
Q Consensus 278 ~~n~~~ 283 (312)
-+|+++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 666654
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=1e-05 Score=67.09 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=50.5
Q ss_pred CCCCCeEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCccc--chHhhccCCCcEEEecCCcCCccc----c-ccccCC
Q 047461 222 LKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIERI--PESIIQLFVSGYLLLSYGIVEDTL----R-IQHTNH 293 (312)
Q Consensus 222 l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~--~~~l~~~~~L~~L~l~~n~~~~~~----~-~~~~~~ 293 (312)
++++..+.+..|.+.. ..-+.+..++.+..|+++.+.|... -+++.+++.|..|.++.+++.+.. + .-.+..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 4566666666664432 1223344566777889999988733 357889999999999999985421 1 222245
Q ss_pred CCchhHH
Q 047461 294 TPAVRWQ 300 (312)
Q Consensus 294 ~~~~~~~ 300 (312)
+++|+++
T Consensus 278 L~~v~vL 284 (418)
T KOG2982|consen 278 LTKVQVL 284 (418)
T ss_pred ccceEEe
Confidence 6666654
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.61 E-value=8.2e-06 Score=66.80 Aligned_cols=131 Identities=13% Similarity=-0.008 Sum_probs=85.2
Q ss_pred CCcCcEEeccCCCCCCCCCccc-------cCCCCeEEcCCccccc--c----hHHHHhcCCCCEEecCCCCCCC----cC
Q 047461 153 LEFLTKLDLSGCSKLKRLPEIS-------SGNISWLFLRGIAIEE--L----PSSIERLLRLGYLDLSDCKRLK----SL 215 (312)
Q Consensus 153 ~~~L~~L~l~~~~~l~~~p~~~-------~~~L~~L~l~~~~l~~--l----~~~~~~l~~L~~L~l~~n~~~~----~~ 215 (312)
-|.|+......| .+...|... ...|+++.+..|+|.. + ...+..+.+|+.||+..|.++- .+
T Consensus 156 kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 456666666663 333322211 2478888888887762 1 2245678899999999987643 24
Q ss_pred chhhhcCCCCCeEeccCCCCCCcchhhh----h--CCCCCcEEeccCCCCc-------ccchH-hhccCCCcEEEecCCc
Q 047461 216 PSSLYRLKSLGVLSLCGCSNLQRLPECL----G--QLSSPITFNLAKTNIE-------RIPES-IIQLFVSGYLLLSYGI 281 (312)
Q Consensus 216 ~~~l~~l~~L~~L~l~~~~~~~~~p~~~----~--~l~~L~~L~l~~n~l~-------~~~~~-l~~~~~L~~L~l~~n~ 281 (312)
...+..|+.|+.|++.+|-+...-...+ . ..++|+.|...+|... .++.. -.++|-|..|.+.+|.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 4567778889999999997765433222 1 3578889998888743 23332 2467778888888887
Q ss_pred CCc
Q 047461 282 VED 284 (312)
Q Consensus 282 ~~~ 284 (312)
+..
T Consensus 315 ~~E 317 (388)
T COG5238 315 IKE 317 (388)
T ss_pred chh
Confidence 743
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.55 E-value=3.5e-06 Score=72.76 Aligned_cols=150 Identities=21% Similarity=0.191 Sum_probs=104.0
Q ss_pred CCcCCcEEEcCCCCcCccccc-cc-cCCCcCcEEeccCCCCCCCCCccc----cCCCCeEEcCCcccc---cchHHHHhc
Q 047461 128 RLNKLVTLNLRGSKSLKSLPS-GI-FNLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFLRGIAIE---ELPSSIERL 198 (312)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~-~l-~~~~~L~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~~l~---~l~~~~~~l 198 (312)
.+.+|+.|..+++...+..+- ++ ....+|+.+.++.|..++..-... .+.|+.+++..+... .+.+...++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 467889999988775554321 23 357899999999998665432221 368999999888544 244445578
Q ss_pred CCCCEEecCCCCCCCcC-----chhhhcCCCCCeEeccCCCCC-CcchhhhhCCCCCcEEeccCCC-Cc--ccchHhhcc
Q 047461 199 LRLGYLDLSDCKRLKSL-----PSSLYRLKSLGVLSLCGCSNL-QRLPECLGQLSSPITFNLAKTN-IE--RIPESIIQL 269 (312)
Q Consensus 199 ~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~-l~--~~~~~l~~~ 269 (312)
+.|+.+.+++|...++. ...-..+..++.+.+++|..+ +...+.+..+++|+.+++-.+. ++ .+.....++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 89999999998765543 233345667999999998765 4556677888999999998876 33 344455677
Q ss_pred CCCcEEEe
Q 047461 270 FVSGYLLL 277 (312)
Q Consensus 270 ~~L~~L~l 277 (312)
|+++..-+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 88775543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00056 Score=53.82 Aligned_cols=102 Identities=16% Similarity=0.183 Sum_probs=57.7
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcc-cCCCchhc--chhhcccccccCCCCCCcCCCcCCcE
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVK-HYSKLNQI--IHAACHKLIAKIPNPTLMPRLNKLVT 134 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~l--~~~~~~~~~~~~~~~~~~~~l~~L~~ 134 (312)
.+...+++++|.+..++..-.++.|..|.+++|.++.+...+. .+++|+.| ..+.. .++.....+..+|+|++
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi----~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI----QELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch----hhhhhcchhccCCccce
Confidence 4567778888887777666688888888888888887654442 34555532 22221 12211123556667777
Q ss_pred EEcCCCCcCcccc---ccccCCCcCcEEeccC
Q 047461 135 LNLRGSKSLKSLP---SGIFNLEFLTKLDLSG 163 (312)
Q Consensus 135 L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~ 163 (312)
|.+-+|.....-- ..+..+++|+.||...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7766665322210 0123445555555544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.0006 Score=55.72 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=15.2
Q ss_pred CCCeEEcCCc--ccc-cchHHHHhcCCCCEEecCCCCC
Q 047461 177 NISWLFLRGI--AIE-ELPSSIERLLRLGYLDLSDCKR 211 (312)
Q Consensus 177 ~L~~L~l~~~--~l~-~l~~~~~~l~~L~~L~l~~n~~ 211 (312)
+|+.|.++.| .+. +++.....+++|+++++++|++
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 5555555554 222 2333333334555555555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00043 Score=56.56 Aligned_cols=102 Identities=21% Similarity=0.220 Sum_probs=54.2
Q ss_pred CCCCeEEcCCcccccchHHHHhcCCCCEEecCCC--CCCCcCchhhhcCCCCCeEeccCCCCCC--cchhhhhCCCCCcE
Q 047461 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC--KRLKSLPSSLYRLKSLGVLSLCGCSNLQ--RLPECLGQLSSPIT 251 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~ 251 (312)
..++.+.+.+.+++.+. .+..+++|++|.++.| ...+.++.....+++|+++.+++|.+.. .++ .+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence 35555555555555431 1234566777777776 4444444434445677777777765431 221 2334556666
Q ss_pred EeccCCCCcccc----hHhhccCCCcEEEecC
Q 047461 252 FNLAKTNIERIP----ESIIQLFVSGYLLLSY 279 (312)
Q Consensus 252 L~l~~n~l~~~~----~~l~~~~~L~~L~l~~ 279 (312)
|++.+|..+.+- ..+.-+++|++|+-.+
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 777666655322 1344556666655333
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00039 Score=57.41 Aligned_cols=97 Identities=24% Similarity=0.098 Sum_probs=63.3
Q ss_pred CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCC-cchhhhhCCCCCcEEecc
Q 047461 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLA 255 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~ 255 (312)
+.+.|+..+|+++++. ....|+.|+.|.|+-|++.+.-| +..++.|+.|+|+.|.+.. .-...+.++++|+.|-|.
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 5567777777777663 23457778888888877655433 5577788888887765532 112456677888888888
Q ss_pred CCCCc-ccc-----hHhhccCCCcEEE
Q 047461 256 KTNIE-RIP-----ESIIQLFVSGYLL 276 (312)
Q Consensus 256 ~n~l~-~~~-----~~l~~~~~L~~L~ 276 (312)
.|+-. .-+ ..+..+|+|++||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 77643 111 2456677777776
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00022 Score=58.81 Aligned_cols=98 Identities=24% Similarity=0.254 Sum_probs=69.5
Q ss_pred CcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchH--HHHhcCCCCEEe
Q 047461 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPS--SIERLLRLGYLD 205 (312)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~ 205 (312)
+.+.++|+.++|. +.++.- +.+++.|+.|.++-|. ++.+.... +++|++|+|..|.|.++-. -+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4467888888887 444332 5578889999999844 44444443 6789999999998887653 366788899999
Q ss_pred cCCCCCCCcCch-----hhhcCCCCCeEe
Q 047461 206 LSDCKRLKSLPS-----SLYRLKSLGVLS 229 (312)
Q Consensus 206 l~~n~~~~~~~~-----~l~~l~~L~~L~ 229 (312)
|..|...+..+. .+.-+++|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 988776664432 455677777776
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.92 E-value=0.002 Score=59.12 Aligned_cols=15 Identities=27% Similarity=-0.126 Sum_probs=8.1
Q ss_pred hccCCCcEEEecCCc
Q 047461 267 IQLFVSGYLLLSYGI 281 (312)
Q Consensus 267 ~~~~~L~~L~l~~n~ 281 (312)
..++.++.+.+.++.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 345555555555555
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.70 E-value=0.0037 Score=30.63 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=8.6
Q ss_pred CcEEeccCCCCcccchH
Q 047461 249 PITFNLAKTNIERIPES 265 (312)
Q Consensus 249 L~~L~l~~n~l~~~~~~ 265 (312)
|+.|++++|.++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44555555555544443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.31 E-value=0.013 Score=26.60 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=6.0
Q ss_pred CCcEEeccCCCCccc
Q 047461 248 SPITFNLAKTNIERI 262 (312)
Q Consensus 248 ~L~~L~l~~n~l~~~ 262 (312)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.85 E-value=0.038 Score=50.68 Aligned_cols=128 Identities=25% Similarity=0.184 Sum_probs=68.3
Q ss_pred CCcCcEEeccCCCCCCCCC--ccc--cCCCCeEEcCCc--ccccc----hHHHHhcCCCCEEecCCCCC-CCcCchhhhc
Q 047461 153 LEFLTKLDLSGCSKLKRLP--EIS--SGNISWLFLRGI--AIEEL----PSSIERLLRLGYLDLSDCKR-LKSLPSSLYR 221 (312)
Q Consensus 153 ~~~L~~L~l~~~~~l~~~p--~~~--~~~L~~L~l~~~--~l~~l----~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~~ 221 (312)
.+.|+.+.+..|..+.... ... .++|+.|+++++ ..... ......+.+|+.++++++.. ....-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5667777777665555421 111 467777777662 11111 12334456777777777663 3222222332
Q ss_pred -CCCCCeEeccCCC-CCC-cchhhhhCCCCCcEEeccCCCCc---ccchHhhccCCCcEEEecCC
Q 047461 222 -LKSLGVLSLCGCS-NLQ-RLPECLGQLSSPITFNLAKTNIE---RIPESIIQLFVSGYLLLSYG 280 (312)
Q Consensus 222 -l~~L~~L~l~~~~-~~~-~~p~~~~~l~~L~~L~l~~n~l~---~~~~~l~~~~~L~~L~l~~n 280 (312)
+++|+.|.+.+|. +++ .+-....++++|++|+++.|... .+......+++++.+.+...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 5677777776665 333 23334445677777777776532 23333445666655554444
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.0051 Score=48.55 Aligned_cols=80 Identities=24% Similarity=0.188 Sum_probs=37.7
Q ss_pred CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcc-hhhhh-CCCCCcEEeccCCC-Cc-ccchHhhccCCCcEEE
Q 047461 201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRL-PECLG-QLSSPITFNLAKTN-IE-RIPESIIQLFVSGYLL 276 (312)
Q Consensus 201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-p~~~~-~l~~L~~L~l~~n~-l~-~~~~~l~~~~~L~~L~ 276 (312)
++.+|-+++.+...--..+..+++++.+.+.+|.-.+.. -+.+. -.++|+.|+++.|+ || .--.++.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444443344445555555555555333221 11111 22556666666554 55 2224555666666666
Q ss_pred ecCC
Q 047461 277 LSYG 280 (312)
Q Consensus 277 l~~n 280 (312)
+++=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5553
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.31 E-value=0.023 Score=27.72 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=12.3
Q ss_pred CccEEeCCCCcccchhhhcc
Q 047461 81 KLMLLEVPDSDIKRLWDCVK 100 (312)
Q Consensus 81 ~L~~L~l~~~~~~~~~~~~~ 100 (312)
+|++|++++|.++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35667777776666665443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.07 E-value=0.23 Score=36.48 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=15.7
Q ss_pred CcCCCcCCcEEEcCCCCcCccccc-cccCCCcCcEEeccC
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPS-GIFNLEFLTKLDLSG 163 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~ 163 (312)
.+..+.+|+.+.+.. . ...++. .+...++++.+.+..
T Consensus 7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-C-eeEeChhhcccccccccccccc
Confidence 455666777777664 2 333332 344455666666554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.60 E-value=0.14 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=15.7
Q ss_pred CCCCcEEeccCCCCcccchHh
Q 047461 246 LSSPITFNLAKTNIERIPESI 266 (312)
Q Consensus 246 l~~L~~L~l~~n~l~~~~~~l 266 (312)
+++|+.|++++|.|+.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777654
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.60 E-value=0.14 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=15.7
Q ss_pred CCCCcEEeccCCCCcccchHh
Q 047461 246 LSSPITFNLAKTNIERIPESI 266 (312)
Q Consensus 246 l~~L~~L~l~~n~l~~~~~~l 266 (312)
+++|+.|++++|.|+.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777654
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.57 E-value=1.1 Score=32.85 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=32.1
Q ss_pred cchhcCCCCCcEEEeeccccccccccccccC-CCCCC-CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchh-
Q 047461 22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLW- 96 (312)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~- 96 (312)
...|..+++|+.+.+.... ..+. ..+.. .+|+.+.+... +..++... ....++.+.+.. .+..++
T Consensus 5 ~~~F~~~~~l~~i~~~~~~--------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~ 74 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPNTI--------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD 74 (129)
T ss_dssp TTTTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T
T ss_pred HHHHhCCCCCCEEEECCCe--------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc
Confidence 3567777778887776421 1121 22233 56777777663 44444422 455667777754 333333
Q ss_pred hhcccCCCch
Q 047461 97 DCVKHYSKLN 106 (312)
Q Consensus 97 ~~~~~l~~L~ 106 (312)
..+..+++++
T Consensus 75 ~~F~~~~~l~ 84 (129)
T PF13306_consen 75 NAFSNCTNLK 84 (129)
T ss_dssp TTTTT-TTEC
T ss_pred cccccccccc
Confidence 2233344444
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.45 E-value=0.0086 Score=54.73 Aligned_cols=160 Identities=25% Similarity=0.237 Sum_probs=83.4
Q ss_pred CcCCCcCCcEEEcCCCCcCcccc----ccccCC-CcCcEEeccCCCCCCCCCccc------cCCCCeEEcCCccccc---
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLP----SGIFNL-EFLTKLDLSGCSKLKRLPEIS------SGNISWLFLRGIAIEE--- 190 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~l~~~p~~~------~~~L~~L~l~~~~l~~--- 190 (312)
.+...+.|..|++++|.+...-- ..+... ..+++|++..|.....-.... ...++.+++..|.+..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 34445566667777666432111 111121 345555555544322110000 2456666666665531
Q ss_pred --chHHHH----hcCCCCEEecCCCCCCCc----CchhhhcCCC-CCeEeccCCCCCCc----chhhhhCC-CCCcEEec
Q 047461 191 --LPSSIE----RLLRLGYLDLSDCKRLKS----LPSSLYRLKS-LGVLSLCGCSNLQR----LPECLGQL-SSPITFNL 254 (312)
Q Consensus 191 --l~~~~~----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~-L~~L~l~~~~~~~~----~p~~~~~l-~~L~~L~l 254 (312)
++..+. ...++++|.+.+|.++.. +...+...++ +..+++..|.+.+. ....+..+ ..++++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 222233 355677777777665432 2223444444 55677766654432 33444445 56777888
Q ss_pred cCCCCc-----ccchHhhccCCCcEEEecCCcCCc
Q 047461 255 AKTNIE-----RIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 255 ~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+.|.++ .+...+..++.++++.++.|++.+
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 888776 334455667777888888887754
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.14 E-value=0.4 Score=24.38 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=14.3
Q ss_pred CCCcEEeccCCCCcccch
Q 047461 247 SSPITFNLAKTNIERIPE 264 (312)
Q Consensus 247 ~~L~~L~l~~n~l~~~~~ 264 (312)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457888888888888876
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.74 E-value=0.3 Score=38.88 Aligned_cols=77 Identities=16% Similarity=-0.034 Sum_probs=57.8
Q ss_pred CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCC-Ccc-cchHh-hccCCCcEEEecCCcCCccccccccCCCCchhHH
Q 047461 224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTN-IER-IPESI-IQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQ 300 (312)
Q Consensus 224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 300 (312)
.++.++-+++.+..+--+.+..+++++.|.+.+|. +.. --+.+ +-.++|+.|+|++|+-.+....+++..+++++.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47888988888888878888899999999998876 221 00111 2468999999999988777777777777777654
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.20 E-value=0.62 Score=22.96 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=3.5
Q ss_pred CcEEeccCCCC
Q 047461 249 PITFNLAKTNI 259 (312)
Q Consensus 249 L~~L~l~~n~l 259 (312)
|+.|++++|.|
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33444444333
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=80.78 E-value=0.68 Score=23.40 Aligned_cols=18 Identities=17% Similarity=-0.392 Sum_probs=10.7
Q ss_pred cCCCcEEEecCCcCCccc
Q 047461 269 LFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 269 ~~~L~~L~l~~n~~~~~~ 286 (312)
+++|++|+|++|+...+.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 456777777777544433
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.55 E-value=2 Score=21.86 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=6.7
Q ss_pred CCcEEeccCCCCc
Q 047461 248 SPITFNLAKTNIE 260 (312)
Q Consensus 248 ~L~~L~l~~n~l~ 260 (312)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.43 E-value=0.089 Score=42.77 Aligned_cols=54 Identities=13% Similarity=-0.080 Sum_probs=21.9
Q ss_pred CeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461 179 SWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC 233 (312)
Q Consensus 179 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 233 (312)
..++++.|.+.-+|...++...++.+++..|. ....|.+++..+.+++++..++
T Consensus 68 ~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 68 VRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred HHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccC
Confidence 33444444444444444444444444433322 2333444444444444444433
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=67.98 E-value=3.7 Score=21.14 Aligned_cols=15 Identities=27% Similarity=-0.037 Sum_probs=11.0
Q ss_pred CCCcEEEecCCcCCc
Q 047461 270 FVSGYLLLSYGIVED 284 (312)
Q Consensus 270 ~~L~~L~l~~n~~~~ 284 (312)
++|++|+|++|.+.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888887753
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=61.78 E-value=0.32 Score=39.70 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred CcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEec
Q 047461 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDL 206 (312)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 206 (312)
+...+.||++.|+ ...+-..++.++.+..|+++. +.+..+|... ...+..++...|..+..|...+..+.++++++
T Consensus 41 ~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhH-HHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 3455555555555 333333344445555555555 3344444333 12334444555555555555555555555555
Q ss_pred CCCC
Q 047461 207 SDCK 210 (312)
Q Consensus 207 ~~n~ 210 (312)
-.+.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.84 E-value=9.7 Score=35.27 Aligned_cols=33 Identities=30% Similarity=0.181 Sum_probs=14.2
Q ss_pred CCCeEEcCCcccccc---hHHHHhcCCCCEEecCCC
Q 047461 177 NISWLFLRGIAIEEL---PSSIERLLRLGYLDLSDC 209 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n 209 (312)
.+..+.+++|++..+ .......++|+.|+|++|
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 444455555544322 222223444555555554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.82 E-value=6.7 Score=36.27 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=47.1
Q ss_pred CCcCCcEEEcCCCCcCc--cccccccCCCcCcEEeccCCC-CCC---CCCccccCCCCeEEcCCccccc--------chH
Q 047461 128 RLNKLVTLNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCS-KLK---RLPEISSGNISWLFLRGIAIEE--------LPS 193 (312)
Q Consensus 128 ~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~-~l~---~~p~~~~~~L~~L~l~~~~l~~--------l~~ 193 (312)
+.+.+..+++++|++.. .+..--...|+|+.|+|++|. .+. .++......|++|.+.+|.+.+ +..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 45678888899887432 223323357889999999962 111 2333334578899999987652 111
Q ss_pred HHHhcCCCCEEe
Q 047461 194 SIERLLRLGYLD 205 (312)
Q Consensus 194 ~~~~l~~L~~L~ 205 (312)
.-..+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 223567776664
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=53.67 E-value=1.1 Score=41.29 Aligned_cols=129 Identities=22% Similarity=0.184 Sum_probs=79.4
Q ss_pred CcEEeccCCCCCCCCCcc-c-----cCCCCeEEcCCccccc-----chHHHHhc-CCCCEEecCCCCCCCc----Cchhh
Q 047461 156 LTKLDLSGCSKLKRLPEI-S-----SGNISWLFLRGIAIEE-----LPSSIERL-LRLGYLDLSDCKRLKS----LPSSL 219 (312)
Q Consensus 156 L~~L~l~~~~~l~~~p~~-~-----~~~L~~L~l~~~~l~~-----l~~~~~~l-~~L~~L~l~~n~~~~~----~~~~l 219 (312)
+..+.+.+|.....-... . ...++.|++++|.+.. +-..+... ..+++|++..|.+.+. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 677777776543321110 0 2467888888887773 11222222 3567777777766553 44556
Q ss_pred hcCCCCCeEeccCCCCCC----cchhhhh----CCCCCcEEeccCCCCcc-----cchHhhccCC-CcEEEecCCcCCc
Q 047461 220 YRLKSLGVLSLCGCSNLQ----RLPECLG----QLSSPITFNLAKTNIER-----IPESIIQLFV-SGYLLLSYGIVED 284 (312)
Q Consensus 220 ~~l~~L~~L~l~~~~~~~----~~p~~~~----~l~~L~~L~l~~n~l~~-----~~~~l~~~~~-L~~L~l~~n~~~~ 284 (312)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++. +...+...+. +..+++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 666778888888876642 2233333 46788999999988771 2234455566 7778899998864
No 89
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=22.11 E-value=66 Score=15.20 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=10.8
Q ss_pred ccEEeCCCCcccchhhh
Q 047461 82 LMLLEVPDSDIKRLWDC 98 (312)
Q Consensus 82 L~~L~l~~~~~~~~~~~ 98 (312)
|..|++.+..+..++++
T Consensus 2 LVeL~m~~S~lekLW~G 18 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWEG 18 (20)
T ss_pred cEEEECCCCChHHhcCc
Confidence 55677777776666544
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.97 E-value=74 Score=35.99 Aligned_cols=32 Identities=9% Similarity=0.018 Sum_probs=24.9
Q ss_pred eccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 229 SLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 229 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
+|++|++..--+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777776656667778889999999998865
Done!