Query 047461
Match_columns 312
No_of_seqs 155 out of 2680
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 19:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 100.0 7E-28 2.4E-32 218.1 19.0 297 4-311 31-411 (455)
2 3rgz_A Protein brassinosteroid 100.0 9.2E-28 3.1E-32 230.5 20.5 228 58-288 418-722 (768)
3 2z7x_B TOLL-like receptor 1, v 100.0 7E-27 2.4E-31 215.1 21.0 158 151-311 321-484 (520)
4 3o6n_A APL1; leucine-rich repe 100.0 9.5E-27 3.2E-31 206.6 20.9 287 5-311 47-355 (390)
5 3rgz_A Protein brassinosteroid 100.0 4E-27 1.4E-31 226.1 19.6 291 4-299 319-708 (768)
6 3t6q_A CD180 antigen; protein- 99.9 1.7E-26 5.8E-31 216.3 21.1 293 5-311 256-563 (606)
7 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-26 5.8E-31 214.5 20.7 294 4-311 53-513 (562)
8 2id5_A Lingo-1, leucine rich r 99.9 1.2E-26 4.1E-31 211.3 19.3 268 4-284 33-334 (477)
9 3oja_B Anopheles plasmodium-re 99.9 3.1E-26 1E-30 214.1 20.6 272 20-311 66-361 (597)
10 4fcg_A Uncharacterized protein 99.9 1.9E-26 6.6E-31 199.8 16.7 221 58-283 81-314 (328)
11 4fmz_A Internalin; leucine ric 99.9 4.9E-25 1.7E-29 192.5 24.8 269 4-297 45-338 (347)
12 3v47_A TOLL-like receptor 5B a 99.9 7.7E-26 2.6E-30 204.7 18.0 277 3-286 54-411 (455)
13 2id5_A Lingo-1, leucine rich r 99.9 2E-25 6.9E-30 203.2 19.4 245 4-260 57-333 (477)
14 4eco_A Uncharacterized protein 99.9 1.2E-25 4E-30 211.5 18.1 269 3-282 249-578 (636)
15 4eco_A Uncharacterized protein 99.9 1.5E-25 5E-30 210.8 18.0 262 3-284 305-601 (636)
16 4fmz_A Internalin; leucine ric 99.9 1.5E-24 5.2E-29 189.4 23.2 241 23-284 38-301 (347)
17 3vq2_A TLR4, TOLL-like recepto 99.9 4E-25 1.4E-29 207.0 20.1 249 24-284 302-559 (606)
18 1ogq_A PGIP-2, polygalacturona 99.9 6E-26 2.1E-30 195.5 13.3 245 58-309 50-305 (313)
19 4ecn_A Leucine-rich repeat pro 99.9 8E-25 2.7E-29 210.4 22.1 263 4-284 549-841 (876)
20 4ecn_A Leucine-rich repeat pro 99.9 2.8E-25 9.7E-30 213.5 19.0 267 3-279 491-785 (876)
21 1ogq_A PGIP-2, polygalacturona 99.9 8.5E-26 2.9E-30 194.6 12.8 243 29-282 50-303 (313)
22 3t6q_A CD180 antigen; protein- 99.9 8.4E-25 2.9E-29 204.8 20.5 272 3-284 81-463 (606)
23 1xku_A Decorin; proteoglycan, 99.9 9.6E-24 3.3E-28 183.1 24.5 260 29-301 52-325 (330)
24 4fcg_A Uncharacterized protein 99.9 2.4E-25 8.4E-30 192.9 14.3 216 78-300 79-306 (328)
25 1o6v_A Internalin A; bacterial 99.9 8.9E-24 3.1E-28 191.8 23.8 243 25-284 64-323 (466)
26 3vq2_A TLR4, TOLL-like recepto 99.9 5.6E-25 1.9E-29 206.0 16.2 271 25-311 281-561 (606)
27 2z63_A TOLL-like receptor 4, v 99.9 4.9E-25 1.7E-29 204.8 15.1 135 176-311 396-534 (570)
28 3o6n_A APL1; leucine-rich repe 99.9 6.3E-24 2.2E-28 188.5 20.9 279 3-297 69-366 (390)
29 1xku_A Decorin; proteoglycan, 99.9 1.1E-23 3.9E-28 182.6 20.1 239 29-285 31-278 (330)
30 1o6v_A Internalin A; bacterial 99.9 2.5E-23 8.5E-28 188.9 22.8 196 78-288 175-371 (466)
31 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-24 1.1E-28 198.5 16.8 270 4-283 27-423 (549)
32 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-23 3.7E-28 182.9 17.9 216 58-283 54-277 (332)
33 3j0a_A TOLL-like receptor 5; m 99.9 7.7E-24 2.6E-28 205.3 18.6 271 3-284 24-376 (844)
34 2z66_A Variable lymphocyte rec 99.9 7.1E-24 2.4E-28 182.0 16.3 221 58-284 28-262 (306)
35 2ft3_A Biglycan; proteoglycan, 99.9 3.8E-23 1.3E-27 179.5 20.9 258 29-300 54-325 (332)
36 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-23 7.3E-28 197.8 21.0 186 125-311 400-625 (680)
37 3oja_B Anopheles plasmodium-re 99.9 4.1E-23 1.4E-27 192.9 21.0 261 4-288 76-363 (597)
38 3zyi_A Leucine-rich repeat-con 99.9 3.4E-23 1.2E-27 187.3 19.6 220 58-283 75-303 (452)
39 3zyj_A Leucine-rich repeat-con 99.9 3.3E-23 1.1E-27 186.7 19.0 220 58-283 64-292 (440)
40 2z81_A CD282 antigen, TOLL-lik 99.9 5.1E-24 1.7E-28 197.2 12.6 156 152-311 332-513 (549)
41 2z63_A TOLL-like receptor 4, v 99.9 2.8E-23 9.6E-28 193.0 16.7 109 176-284 347-484 (570)
42 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-23 1.2E-27 190.3 17.3 158 127-287 321-485 (520)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.3E-23 3.2E-27 189.3 20.1 157 127-287 350-514 (562)
44 2z80_A TOLL-like receptor 2, v 99.9 7.5E-23 2.6E-27 179.1 16.5 248 29-286 52-317 (353)
45 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-22 7.1E-27 182.0 19.4 233 24-287 59-303 (457)
46 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-21 4.4E-26 185.6 25.5 224 58-285 381-624 (680)
47 3bz5_A Internalin-J, INLJ; leu 99.9 6.4E-22 2.2E-26 178.8 22.2 235 25-284 81-332 (457)
48 1ozn_A Reticulon 4 receptor; N 99.9 3.7E-22 1.3E-26 169.5 19.4 199 58-283 32-238 (285)
49 2z66_A Variable lymphocyte rec 99.9 1E-22 3.5E-27 174.7 15.7 223 29-260 28-261 (306)
50 3j0a_A TOLL-like receptor 5; m 99.9 3E-22 1E-26 194.1 19.5 269 3-284 48-395 (844)
51 3zyj_A Leucine-rich repeat-con 99.9 7.1E-22 2.4E-26 178.0 19.5 244 58-311 43-295 (440)
52 3zyi_A Leucine-rich repeat-con 99.9 7.8E-22 2.7E-26 178.3 18.9 243 59-311 55-306 (452)
53 4g8a_A TOLL-like receptor 4; l 99.9 6.5E-22 2.2E-26 185.8 18.5 135 176-311 445-583 (635)
54 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-21 5E-26 165.8 18.4 200 28-260 31-238 (285)
55 2z80_A TOLL-like receptor 2, v 99.9 1.4E-22 4.9E-27 177.4 11.7 269 28-311 30-317 (353)
56 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-20 4.1E-25 175.8 23.3 220 29-285 61-299 (622)
57 3oja_A Leucine-rich immune mol 99.9 4.4E-22 1.5E-26 181.4 12.5 167 130-302 99-269 (487)
58 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-23 8.6E-28 179.5 4.1 234 24-278 29-270 (317)
59 1p9a_G Platelet glycoprotein I 99.9 1.8E-20 6.2E-25 159.4 19.4 132 128-282 75-207 (290)
60 1jl5_A Outer protein YOPM; leu 99.9 5.4E-20 1.8E-24 166.1 22.4 203 58-284 153-371 (454)
61 2z62_A TOLL-like receptor 4, v 99.9 2.1E-20 7.3E-25 157.9 18.6 199 58-284 28-238 (276)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-21 5.8E-26 168.0 12.0 227 58-302 34-269 (317)
63 2o6q_A Variable lymphocyte rec 99.9 5.6E-20 1.9E-24 154.9 20.8 198 59-282 17-217 (270)
64 1jl5_A Outer protein YOPM; leu 99.9 3.9E-21 1.3E-25 173.6 14.4 242 4-282 12-269 (454)
65 1h6u_A Internalin H; cell adhe 99.9 5.3E-20 1.8E-24 157.9 19.9 190 58-283 41-230 (308)
66 2z62_A TOLL-like receptor 4, v 99.9 1.3E-20 4.6E-25 159.1 15.8 218 66-311 15-240 (276)
67 1wwl_A Monocyte differentiatio 99.9 2.1E-22 7.3E-27 173.2 4.8 196 79-284 94-310 (312)
68 3oja_A Leucine-rich immune mol 99.8 9.2E-22 3.1E-26 179.2 8.5 230 28-278 33-270 (487)
69 3rfs_A Internalin B, repeat mo 99.8 3E-20 1E-24 156.7 15.8 194 58-286 41-238 (272)
70 1p9a_G Platelet glycoprotein I 99.8 3.4E-20 1.2E-24 157.7 15.3 179 130-311 31-211 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-19 5.3E-24 168.3 20.5 232 29-301 40-290 (622)
72 4glp_A Monocyte differentiatio 99.8 1.1E-20 3.8E-25 162.3 11.8 221 58-284 64-308 (310)
73 1wwl_A Monocyte differentiatio 99.8 8.3E-22 2.8E-26 169.6 4.1 238 58-307 43-308 (312)
74 2ca6_A RAN GTPase-activating p 99.8 1.5E-21 5.1E-26 172.9 4.8 245 18-286 21-319 (386)
75 2o6q_A Variable lymphocyte rec 99.8 2.1E-18 7.3E-23 145.1 21.3 197 30-260 17-218 (270)
76 1h6u_A Internalin H; cell adhe 99.8 7.6E-19 2.6E-23 150.7 18.2 184 78-301 39-223 (308)
77 3rfs_A Internalin B, repeat mo 99.8 2.3E-19 7.9E-24 151.2 14.8 158 125-285 58-220 (272)
78 2ast_B S-phase kinase-associat 99.8 3.1E-20 1.1E-24 161.2 6.9 247 29-287 47-310 (336)
79 3m19_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 142.0 19.1 174 59-260 15-192 (251)
80 1z7x_W Ribonuclease inhibitor; 99.8 7.8E-21 2.7E-25 172.0 2.4 158 126-284 223-412 (461)
81 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-21 8.4E-26 175.4 -1.1 109 176-284 227-355 (461)
82 2xwt_C Thyrotropin receptor; s 99.8 1.6E-19 5.4E-24 149.3 9.8 194 58-281 31-237 (239)
83 4g8a_A TOLL-like receptor 4; l 99.8 4.3E-18 1.5E-22 159.8 20.0 222 58-283 349-580 (635)
84 2ast_B S-phase kinase-associat 99.8 3.9E-19 1.3E-23 154.3 9.7 234 59-299 48-300 (336)
85 1h6t_A Internalin B; cell adhe 99.8 4.2E-18 1.4E-22 144.9 15.9 147 129-284 67-214 (291)
86 3cvr_A Invasion plasmid antige 99.8 6E-18 2.1E-22 155.9 17.8 184 59-269 60-253 (571)
87 2ca6_A RAN GTPase-activating p 99.8 3.8E-20 1.3E-24 163.9 1.1 160 125-284 89-288 (386)
88 4ezg_A Putative uncharacterize 99.8 2.8E-18 9.5E-23 137.5 11.8 155 125-284 39-195 (197)
89 4ay9_X Follicle-stimulating ho 99.8 3.3E-18 1.1E-22 149.4 10.6 223 50-280 23-256 (350)
90 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.8E-22 155.5 13.8 125 128-260 85-210 (605)
91 3m19_A Variable lymphocyte rec 99.7 2.5E-17 8.4E-22 137.1 14.5 165 117-285 26-194 (251)
92 3goz_A Leucine-rich repeat-con 99.7 2.8E-19 9.6E-24 156.9 2.1 239 22-285 15-299 (362)
93 4glp_A Monocyte differentiatio 99.7 2.9E-18 9.8E-23 147.3 8.0 218 78-304 62-303 (310)
94 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.7E-22 138.2 11.1 192 29-257 31-236 (239)
95 3ogk_B Coronatine-insensitive 99.7 1.2E-18 4.1E-23 162.6 5.8 238 58-298 270-541 (592)
96 3ogk_B Coronatine-insensitive 99.7 2.2E-19 7.4E-24 167.6 -2.5 256 26-285 161-503 (592)
97 3cvr_A Invasion plasmid antige 99.7 2.7E-16 9.2E-21 144.9 17.4 192 24-247 49-254 (571)
98 3goz_A Leucine-rich repeat-con 99.7 4.4E-18 1.5E-22 149.3 4.1 201 58-282 22-265 (362)
99 1h6t_A Internalin B; cell adhe 99.7 6.1E-16 2.1E-20 131.5 16.8 163 126-300 42-205 (291)
100 3e6j_A Variable lymphocyte rec 99.7 1.9E-16 6.6E-21 129.8 12.5 151 131-285 20-174 (229)
101 2v70_A SLIT-2, SLIT homolog 2 99.7 2.9E-16 1E-20 127.9 13.5 148 133-284 14-167 (220)
102 1m9s_A Internalin B; cell inva 99.7 4.9E-16 1.7E-20 144.5 16.5 168 58-237 43-211 (605)
103 2o6s_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 125.4 13.4 134 128-269 50-188 (208)
104 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.7E-21 133.0 10.7 169 59-263 20-188 (263)
105 2v9t_B SLIT homolog 2 protein 99.7 2.5E-16 8.6E-21 128.3 11.4 149 132-284 13-166 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-16 1.3E-20 127.2 11.9 154 156-311 13-169 (220)
107 3e6j_A Variable lymphocyte rec 99.7 1.7E-15 5.7E-20 124.2 15.2 129 130-260 40-172 (229)
108 2v9t_B SLIT homolog 2 protein 99.7 9.6E-16 3.3E-20 124.8 13.7 131 130-260 32-165 (220)
109 4ezg_A Putative uncharacterize 99.7 5.7E-16 2E-20 124.0 12.0 146 151-302 41-188 (197)
110 2xot_A Amphoterin-induced prot 99.7 2.9E-16 9.8E-21 137.7 11.2 152 131-283 40-202 (361)
111 2xot_A Amphoterin-induced prot 99.7 2.5E-15 8.6E-20 131.6 15.6 173 60-260 20-202 (361)
112 2o6s_A Variable lymphocyte rec 99.6 1.1E-15 3.9E-20 123.3 11.5 151 130-287 28-182 (208)
113 1dce_A Protein (RAB geranylger 99.6 6.6E-18 2.3E-22 156.1 -1.9 190 78-286 347-549 (567)
114 4ay9_X Follicle-stimulating ho 99.6 1.4E-15 4.8E-20 132.7 12.6 215 61-284 12-237 (350)
115 1xeu_A Internalin C; cellular 99.6 1.9E-15 6.5E-20 126.5 11.7 151 125-285 36-187 (263)
116 1w8a_A SLIT protein; signaling 99.6 2.5E-15 8.6E-20 119.7 11.0 124 133-260 11-139 (192)
117 2p1m_B Transport inhibitor res 99.6 6.4E-17 2.2E-21 150.9 1.1 123 176-299 372-510 (594)
118 2wfh_A SLIT homolog 2 protein 99.6 9.1E-15 3.1E-19 116.5 12.8 108 176-283 31-139 (193)
119 1dce_A Protein (RAB geranylger 99.6 2E-17 6.8E-22 152.9 -4.6 170 127-301 346-539 (567)
120 2ell_A Acidic leucine-rich nuc 99.6 1.6E-14 5.4E-19 112.5 12.6 133 129-284 23-161 (168)
121 2p1m_B Transport inhibitor res 99.6 3E-17 1E-21 153.1 -3.6 202 78-284 287-520 (594)
122 2je0_A Acidic leucine-rich nuc 99.6 7E-15 2.4E-19 112.1 9.9 128 129-279 16-149 (149)
123 2ell_A Acidic leucine-rich nuc 99.6 7.4E-15 2.5E-19 114.3 10.2 125 176-302 24-154 (168)
124 2je0_A Acidic leucine-rich nuc 99.6 4.8E-14 1.6E-18 107.4 12.0 128 102-255 16-148 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.5 3.4E-14 1.2E-18 111.5 9.9 133 126-284 15-154 (176)
126 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 108.3 12.5 108 177-284 29-138 (177)
127 4b8c_D Glucose-repressible alc 99.5 2.5E-14 8.7E-19 136.0 8.2 139 146-287 216-358 (727)
128 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.4E-19 137.5 6.4 147 125-280 219-369 (727)
129 2wfh_A SLIT homolog 2 protein 99.5 9.2E-14 3.2E-18 110.7 9.3 130 178-311 12-142 (193)
130 1w8a_A SLIT protein; signaling 99.5 2.8E-13 9.7E-18 107.8 11.8 130 157-287 11-143 (192)
131 1ds9_A Outer arm dynein; leuci 99.4 2.5E-15 8.5E-20 120.4 -3.8 133 147-284 41-186 (198)
132 1a9n_A U2A', U2A'; complex (nu 99.4 4.8E-13 1.6E-17 104.9 8.6 109 176-286 19-129 (176)
133 3g39_A Variable lymphocyte rec 99.4 8.6E-13 2.9E-17 102.8 9.1 104 178-283 11-115 (170)
134 2o6r_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 103.4 9.0 132 177-311 8-140 (177)
135 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 102.3 9.3 103 157-260 15-118 (174)
136 3sb4_A Hypothetical leucine ri 99.3 1.1E-11 3.8E-16 107.0 11.7 256 28-298 24-324 (329)
137 1ds9_A Outer arm dynein; leuci 99.3 6E-14 2E-18 112.3 -3.9 107 175-285 47-155 (198)
138 3g39_A Variable lymphocyte rec 99.3 2.6E-11 8.8E-16 94.4 10.9 85 176-260 30-115 (170)
139 2r9u_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 94.0 11.0 106 177-284 13-119 (174)
140 3un9_A NLR family member X1; l 99.2 4.1E-12 1.4E-16 111.4 3.7 155 130-284 72-253 (372)
141 2ifg_A High affinity nerve gro 99.2 7.7E-11 2.6E-15 102.4 10.1 101 182-283 14-116 (347)
142 4fdw_A Leucine rich hypothetic 99.1 6.2E-09 2.1E-13 92.1 16.7 212 58-283 135-358 (401)
143 3sb4_A Hypothetical leucine ri 99.1 7.8E-10 2.7E-14 95.3 10.7 93 183-277 233-328 (329)
144 3un9_A NLR family member X1; l 99.0 5.5E-11 1.9E-15 104.2 2.4 154 130-283 101-283 (372)
145 4fdw_A Leucine rich hypothetic 99.0 1.2E-08 4.3E-13 90.1 16.6 239 22-282 129-382 (401)
146 2ra8_A Uncharacterized protein 98.9 1.6E-09 5.6E-14 94.3 7.4 136 148-284 166-321 (362)
147 2ifg_A High affinity nerve gro 98.9 5.7E-09 2E-13 90.5 9.7 100 133-235 11-115 (347)
148 1io0_A Tropomodulin; LRR prote 98.7 3.8E-08 1.3E-12 77.4 7.4 108 177-284 37-165 (185)
149 2ra8_A Uncharacterized protein 98.5 6.1E-08 2.1E-12 84.3 4.9 151 127-281 169-341 (362)
150 4fs7_A Uncharacterized protein 98.5 1.5E-05 5.3E-10 70.1 19.4 83 195-280 293-376 (394)
151 1io0_A Tropomodulin; LRR prote 98.5 1.7E-07 5.9E-12 73.6 5.6 113 126-260 32-164 (185)
152 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.5E-12 72.9 4.1 86 199-284 61-153 (176)
153 4fs7_A Uncharacterized protein 98.4 4.2E-06 1.4E-10 73.8 13.7 144 126-275 249-393 (394)
154 3rw6_A Nuclear RNA export fact 98.3 1.7E-06 5.9E-11 71.6 7.7 80 196-276 167-257 (267)
155 4gt6_A Cell surface protein; l 98.1 0.00016 5.4E-09 63.6 17.6 85 195-282 284-369 (394)
156 3rw6_A Nuclear RNA export fact 98.1 1.6E-06 5.6E-11 71.7 3.4 65 220-285 167-235 (267)
157 4gt6_A Cell surface protein; l 98.0 0.00024 8.1E-09 62.5 16.6 125 150-281 261-389 (394)
158 3e4g_A ATP synthase subunit S, 98.0 1.3E-05 4.3E-10 61.8 6.6 35 224-258 115-150 (176)
159 4h09_A Hypothetical leucine ri 97.9 0.0017 5.7E-08 56.6 20.3 102 176-280 240-343 (379)
160 4h09_A Hypothetical leucine ri 97.7 0.0026 8.8E-08 55.4 18.0 76 3-90 46-123 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 0.00028 9.4E-09 55.4 8.2 106 177-282 42-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0019 6.4E-08 50.6 6.6 87 194-280 36-136 (197)
163 3rfe_A Platelet glycoprotein I 95.5 0.018 6.2E-07 41.8 4.7 33 201-233 33-65 (130)
164 3rfe_A Platelet glycoprotein I 94.8 0.055 1.9E-06 39.2 5.7 43 169-211 24-67 (130)
165 2lz0_A Uncharacterized protein 26.7 90 0.0031 20.7 4.2 38 218-256 15-52 (100)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=7e-28 Score=218.10 Aligned_cols=297 Identities=16% Similarity=0.165 Sum_probs=202.4
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-CcC
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SAE 80 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l~ 80 (312)
+++.+++..+... +.....|.++++|++|++++|.+ .....+..+.. ++|++|++++|.+..+ +..+ .++
T Consensus 31 ~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~~-----~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 31 HVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQTP-----GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TCCEEECCSSCCC--EECTTTTSSCTTCCEEECCCCST-----TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred ccCEEEecCCccC--cCChhHhccCccccEEECcCCcc-----cceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 4566666555443 33457788999999999998764 11222344555 8899999999988766 3344 788
Q ss_pred CccEEeCCCCcccc-hhhh--cccCCCchhcchhhcccccccC-CCCCCcCCCcCCcEEEcCCCCcCccccccccC----
Q 047461 81 KLMLLEVPDSDIKR-LWDC--VKHYSKLNQIIHAACHKLIAKI-PNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN---- 152 (312)
Q Consensus 81 ~L~~L~l~~~~~~~-~~~~--~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---- 152 (312)
+|++|++++|.++. .+.. +..+++|+.|...... +..+ +. ..++.+++|++|++++|.+.+..+..+..
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN--IKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB--CCSCCCC-GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc--cCccCcc-cccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence 99999999998875 3333 7788888844333211 2333 22 12678889999999998866555544433
Q ss_pred ------------------------------CCcCcEEeccCCCCCCCCC-------------------------------
Q 047461 153 ------------------------------LEFLTKLDLSGCSKLKRLP------------------------------- 171 (312)
Q Consensus 153 ------------------------------~~~L~~L~l~~~~~l~~~p------------------------------- 171 (312)
+++|++|++++|...+..|
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 2567777777764221000
Q ss_pred ----------ccccCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcch
Q 047461 172 ----------EISSGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLP 240 (312)
Q Consensus 172 ----------~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p 240 (312)
.....+++.+++++|.++++ |..++.+++|++|++++|++.+..+..++.+++|++|++++|.+.+..|
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 00014677888888877754 4567778888888888888877777778888888888888887766667
Q ss_pred hhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 241 ECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 241 ~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++.+ .+...+..++.++.++...+.+.+.|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCC
Confidence 7788888888888888888844 6677888888888888888875 33334455666666665555555554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=9.2e-28 Score=230.54 Aligned_cols=228 Identities=21% Similarity=0.244 Sum_probs=153.2
Q ss_pred CCccEEeeCCCCCC-CCCCcc-CcCCccEEeCCCCccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461 58 AEVKYLHWHGYPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT 134 (312)
Q Consensus 58 ~~L~~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 134 (312)
++|++|++++|.+. .+|..+ .+++|+.|++++|.+. .+|..+..+++|+.|...... +...+|. .++.+++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~--~l~~l~~L~~ 494 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPS--GLSNCTNLNW 494 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCG--GGGGCTTCCE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-ccCcCCH--HHhcCCCCCE
Confidence 45555555555443 223322 4555555555555554 344455555555532222110 1223333 5566666666
Q ss_pred EEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccc-cchHH-----------------
Q 047461 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSS----------------- 194 (312)
Q Consensus 135 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~----------------- 194 (312)
|++++|.+.+.+|..+..+++|++|++++|...+.+|... .++|+.|++++|.++ .+|..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 6666666555666666666666666666655444444332 356666666666554 33322
Q ss_pred -----------------------------------------------------HHhcCCCCEEecCCCCCCCcCchhhhc
Q 047461 195 -----------------------------------------------------IERLLRLGYLDLSDCKRLKSLPSSLYR 221 (312)
Q Consensus 195 -----------------------------------------------------~~~l~~L~~L~l~~n~~~~~~~~~l~~ 221 (312)
++.+++|+.|++++|++.+.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 233567889999999999999999999
Q ss_pred CCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccc
Q 047461 222 LKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRI 288 (312)
Q Consensus 222 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 288 (312)
+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++ .+|..+..+++|++|++++|++.|.+|.
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999999999999999999999999999999 8899999999999999999999887664
No 3
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=215.06 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=121.4
Q ss_pred cCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc---chHHHHhcCCCCEEecCCCCCCCcCchh-hhcCCC
Q 047461 151 FNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE---LPSSIERLLRLGYLDLSDCKRLKSLPSS-LYRLKS 224 (312)
Q Consensus 151 ~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~ 224 (312)
..+++|++|++++|...+..|... .++|+.|++++|.+++ +|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 456777888888865544344332 4688899998888885 4456788889999999998887756653 667788
Q ss_pred CCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhh
Q 047461 225 LGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQ 304 (312)
Q Consensus 225 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 304 (312)
|+.|++++|.+.+..|..+. ++|+.|++++|.++.+|..+..+++|++|++++|++.+ .+...+..++.++.++...
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcC
Confidence 99999998888777776543 78999999999999999888899999999999999885 4433456777777777777
Q ss_pred cceeeec
Q 047461 305 EVWLNVC 311 (312)
Q Consensus 305 ~~~~~~~ 311 (312)
++|.|.|
T Consensus 478 N~~~c~c 484 (520)
T 2z7x_B 478 NPWDCSC 484 (520)
T ss_dssp SCBCCCH
T ss_pred CCCcccC
Confidence 7777665
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=9.5e-27 Score=206.65 Aligned_cols=287 Identities=11% Similarity=0.092 Sum_probs=199.0
Q ss_pred eEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCc-c-CcCC
Q 047461 5 IEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN-L-SAEK 81 (312)
Q Consensus 5 i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~-~l~~ 81 (312)
++.+.+.-+.. .......|.++++|++|+++++.+. ...+..+.. ++|++|++++|.+..++.. + .+++
T Consensus 47 l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 47 QKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ceEEEecCCch--hhCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 34444443322 2233456778888888888887641 122234455 7888999888888777654 3 7888
Q ss_pred ccEEeCCCCcccchhhh-cccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEe
Q 047461 82 LMLLEVPDSDIKRLWDC-VKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLD 160 (312)
Q Consensus 82 L~~L~l~~~~~~~~~~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 160 (312)
|++|++++|.++.++.. +..+++|+.|...... +..++. ..++.+++|++|++++|.+... + +..+++|++|+
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~ 192 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LERIED-DTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHAN 192 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCBCCT-TTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEE
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc--cCccCh-hhccCCCCCCEEECCCCcCCcc-c--cccccccceee
Confidence 88999988888887765 4778888844333211 222221 2577888888888888874432 2 33445555554
Q ss_pred ccCCC------------------CCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcC
Q 047461 161 LSGCS------------------KLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRL 222 (312)
Q Consensus 161 l~~~~------------------~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 222 (312)
+++|. .+..+|.....+|+.|++++|.+++. ..++.+++|++|++++|.+.+..|..+..+
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 44432 22222322235788888888888876 467888999999999999888888889999
Q ss_pred CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHh
Q 047461 223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEI 302 (312)
Q Consensus 223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 302 (312)
++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|..+..+++|++|++++|++.+. ++. .++.++.++.
T Consensus 272 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~---~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLS---THHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-CCC---TTCCCSEEEC
T ss_pred ccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-Cch---hhccCCEEEc
Confidence 99999999998764 466666788999999999999998888889999999999999998764 333 4555555555
Q ss_pred hhcceeeec
Q 047461 303 WQEVWLNVC 311 (312)
Q Consensus 303 ~~~~~~~~~ 311 (312)
..++|.+.|
T Consensus 347 ~~N~~~~~~ 355 (390)
T 3o6n_A 347 SHNDWDCNS 355 (390)
T ss_dssp CSSCEEHHH
T ss_pred CCCCccchh
Confidence 555555443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4e-27 Score=226.14 Aligned_cols=291 Identities=19% Similarity=0.219 Sum_probs=198.6
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeecccccccccccc-------------------ccCCCCCC---CCcc
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKM-------------------SYLQDPGF---AEVK 61 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------------~~~~~~~~---~~L~ 61 (312)
+++.+++..+... .......|.++++|++|++++|.+.+...... ..+..+.. ++|+
T Consensus 319 ~L~~L~L~~n~l~-~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 319 LLESLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TCCEEECCSSEEE-EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CccEEECCCCccc-CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 4455554443321 12223447788888888888876422110000 01111111 3456
Q ss_pred EEeeCCCCCC-CCCCcc-CcCCccEEeCCCCccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461 62 YLHWHGYPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR 138 (312)
Q Consensus 62 ~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (312)
+|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+..+++|+.|...... +...++. .++.+++|++|+++
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~--~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQ--ELMYVKTLETLILD 474 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CCSCCCG--GGGGCTTCCEEECC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-ccCcCCH--HHcCCCCceEEEec
Confidence 6666665544 334333 5667777777777666 455666667777743332211 1234444 67778888888888
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcC
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSL 215 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~ 215 (312)
+|.+.+.+|..+..+++|++|++++|...+.+|... .++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 888777888888888888888888877666677553 578889999998887 57788888889999999988877666
Q ss_pred chhhh----------------------------------------------------------------------cCCCC
Q 047461 216 PSSLY----------------------------------------------------------------------RLKSL 225 (312)
Q Consensus 216 ~~~l~----------------------------------------------------------------------~l~~L 225 (312)
|..++ .+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 65432 34678
Q ss_pred CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhH
Q 047461 226 GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRW 299 (312)
Q Consensus 226 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 299 (312)
+.|++++|.+.+.+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|++.+..+. .+..++.++.
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~ 708 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTE 708 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSE
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCE
Confidence 89999999999999999999999999999999999 8999999999999999999999876553 2233444443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.7e-26 Score=216.30 Aligned_cols=293 Identities=18% Similarity=0.127 Sum_probs=182.9
Q ss_pred eEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-cc-CcCC
Q 047461 5 IEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-NL-SAEK 81 (312)
Q Consensus 5 i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~-~l~~ 81 (312)
++.+.+. ++...+.....|+.+++|++|++++|.+ ..++..+.. ++|++|++++|.+..++. .+ .+++
T Consensus 256 L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 256 VESINLQ--KHYFFNISSNTFHCFSGLQELDLTATHL-------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp EEEEECT--TCCCSSCCTTTTTTCTTCSEEECTTSCC-------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred eeEEEee--cCccCccCHHHhccccCCCEEeccCCcc-------CCCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 4444444 3333445556788899999999998775 244556666 889999999888776643 22 7788
Q ss_pred ccEEeCCCCccc-chhh-hcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461 82 LMLLEVPDSDIK-RLWD-CVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT 157 (312)
Q Consensus 82 L~~L~l~~~~~~-~~~~-~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 157 (312)
|++|++++|.+. .++. .+..+++|+. ++.+.... ....+. .++.+++|++|++++|.+.+..|..+..+++|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEESTT--TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc-ccCcch--hcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 888888888766 4443 3667777774 33333211 111133 566777777777777776555566666777777
Q ss_pred EEeccCCCCCCCCCcc--c-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCc---CchhhhcCCCCCeEec
Q 047461 158 KLDLSGCSKLKRLPEI--S-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKS---LPSSLYRLKSLGVLSL 230 (312)
Q Consensus 158 ~L~l~~~~~l~~~p~~--~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l 230 (312)
+|++++|......+.. . .++|+.|++++|.++.. |..++.+++|++|++++|.+.+. .+..+..+++|+.|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 7777775543332221 1 35677777777776653 34566677777777777766542 2234666677777777
Q ss_pred cCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceee
Q 047461 231 CGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLN 309 (312)
Q Consensus 231 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
++|.+.+..|..+..+++|+.|++++|+++ ..|..+..++.| +|++++|++.+..+ ..+..++.++.++...++|.|
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP-SLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG-GGHHHHHTSSEEECTTCCEEC
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH-hhcccCCCCCEEeCCCCCccc
Confidence 777666666666677777777777777776 445566667777 77777776664322 222334444444445555555
Q ss_pred ec
Q 047461 310 VC 311 (312)
Q Consensus 310 ~~ 311 (312)
.|
T Consensus 562 ~c 563 (606)
T 3t6q_A 562 TC 563 (606)
T ss_dssp SG
T ss_pred cC
Confidence 44
No 7
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.7e-26 Score=214.47 Aligned_cols=294 Identities=14% Similarity=0.124 Sum_probs=202.6
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCc
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKL 82 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L 82 (312)
+++.+++..+.. .......|.++++|++|++++|.+. ...+..+.. ++|++|++++|.+..+|.. .+++|
T Consensus 53 ~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L 123 (562)
T 3a79_B 53 RTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASL 123 (562)
T ss_dssp TCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTC
T ss_pred CcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccC
Confidence 455555554443 3444578889999999999988752 222445555 8899999999988888877 78889
Q ss_pred cEEeCCCCcccchh--hhcccCCCchh--cchhhccc--------c--------------cccCCCCCCcCC--------
Q 047461 83 MLLEVPDSDIKRLW--DCVKHYSKLNQ--IIHAACHK--------L--------------IAKIPNPTLMPR-------- 128 (312)
Q Consensus 83 ~~L~l~~~~~~~~~--~~~~~l~~L~~--l~~~~~~~--------~--------------~~~~~~~~~~~~-------- 128 (312)
++|++++|.+..++ ..+..+++|+. ++.+.... + ....+. .+..
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~--~l~~l~~~~l~l 201 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE--SLQIPNTTVLHL 201 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCC--EEEECCEEEEEE
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcc--cccccCcceEEE
Confidence 99999988888654 56777888773 33322110 0 000000 1111
Q ss_pred ------------------C-------------------------------------------------------cCCcEE
Q 047461 129 ------------------L-------------------------------------------------------NKLVTL 135 (312)
Q Consensus 129 ------------------l-------------------------------------------------------~~L~~L 135 (312)
+ ++|++|
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L 281 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence 1 145555
Q ss_pred EcCCCCcCccccccc-----------------------------------------------------cCCCcCcEEecc
Q 047461 136 NLRGSKSLKSLPSGI-----------------------------------------------------FNLEFLTKLDLS 162 (312)
Q Consensus 136 ~l~~~~~~~~~~~~l-----------------------------------------------------~~~~~L~~L~l~ 162 (312)
++++|.+.+.+|..+ ..+++|++|+++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT 361 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECC
Confidence 555555444555433 456778888888
Q ss_pred CCCCCCCCCccc--cCCCCeEEcCCcccccch---HHHHhcCCCCEEecCCCCCCCcCch-hhhcCCCCCeEeccCCCCC
Q 047461 163 GCSKLKRLPEIS--SGNISWLFLRGIAIEELP---SSIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNL 236 (312)
Q Consensus 163 ~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~~~ 236 (312)
+|...+..|... .++|+.|++++|.+++++ ..++.+++|++|++++|++.+.+|. .+..+++|+.|++++|.+.
T Consensus 362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 865554444332 468889999988888654 4567888899999999888775554 4667788999999988887
Q ss_pred CcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 237 QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 237 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
+..|..+. ++|+.|++++|.++.+|..+..+++|++|++++|++.+ .+...+..++.++.++...++|.|.|
T Consensus 442 ~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 442 GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 76665443 68999999999999999888899999999999999885 34334567777777777777777766
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=211.29 Aligned_cols=268 Identities=17% Similarity=0.151 Sum_probs=177.0
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcC
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAE 80 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~ 80 (312)
.++.++|..+... ......|.++++|++|++++|.+ ....+..+.. ++|++|++++|.+..++... .++
T Consensus 33 ~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 33 ETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp TCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCcEEECCCCccc--eECHhHccCCCCCCEEECCCCcc------CEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 3455555544433 33346788888999999988764 2222445555 78888888888888777642 778
Q ss_pred CccEEeCCCCcccchh-hhcccCCCchhcc--hhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcc------------
Q 047461 81 KLMLLEVPDSDIKRLW-DCVKHYSKLNQII--HAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKS------------ 145 (312)
Q Consensus 81 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~l~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------ 145 (312)
+|++|++++|.+..++ ..+..+++|+.|. .+... ...+. .++.+++|++|++++|.+...
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV---YISHR--AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---EECTT--SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccc---eeChh--hccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 8888888888887653 4567777777443 33321 11222 455566666666666653322
Q ss_pred ------------ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCC
Q 047461 146 ------------LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCK 210 (312)
Q Consensus 146 ------------~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~ 210 (312)
.+..+..+++|+.|++++|.....+|... ..+|+.|++++|.++.+|. .++.+++|++|++++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 22234444555555555544444333322 2367778888888877774 56777888888888887
Q ss_pred CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCc
Q 047461 211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~ 284 (312)
+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++..
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 776666667778888888888887777777777888888888888888886654 45677888888888887754
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-26 Score=214.12 Aligned_cols=272 Identities=11% Similarity=0.077 Sum_probs=196.7
Q ss_pred CCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchh
Q 047461 20 PNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLW 96 (312)
Q Consensus 20 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~ 96 (312)
.....|.++++|++|++++|.+. ...+..+.. ++|++|++++|.+..++... .+++|++|++++|.+..+|
T Consensus 66 lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCHHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 34456778888899988887642 222234555 78899999888887776543 7888899999988888877
Q ss_pred hh-cccCCCchhc--chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCC--------
Q 047461 97 DC-VKHYSKLNQI--IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS-------- 165 (312)
Q Consensus 97 ~~-~~~l~~L~~l--~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------- 165 (312)
.. +..+++|+.| +.+.. ....+. .++.+++|++|++++|.+.+. + +..+++|++|++++|.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l---~~~~~~--~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~ 211 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNL---ERIEDD--TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPI 211 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCC---CBCCTT--TTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCT
T ss_pred HHHhccCCCCCEEEeeCCcC---CCCChh--hhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCc
Confidence 55 5788888844 44432 222333 677888888888888875432 2 2345555555554432
Q ss_pred ----------CCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCC
Q 047461 166 ----------KLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN 235 (312)
Q Consensus 166 ----------~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 235 (312)
.+..++.....+|+.|++++|.+++. ..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus 212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred hhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 12222222235788888888888875 5678899999999999999888888899999999999999876
Q ss_pred CCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 236 LQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 236 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+ +|..+..+++|+.|++++|.++.+|..+..+++|++|++++|.+.+. ++. .++.++.++...+.|.+.|
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~~~---~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLS---THHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-CCC---TTCCCSEEECCSSCEEHHH
T ss_pred CC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-Chh---hcCCCCEEEeeCCCCCChh
Confidence 55 67777789999999999999999998899999999999999998764 333 4555555555555555443
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.9e-26 Score=199.83 Aligned_cols=221 Identities=24% Similarity=0.345 Sum_probs=172.8
Q ss_pred CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEE
Q 047461 58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLN 136 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 136 (312)
.++++|+++++.+..+|..+ .+++|++|++++|.+..+|..+..+++|+.|...... +..+|. .++.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~--l~~lp~--~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP--LRALPA--SIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC--CCCCCG--GGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc--cccCcH--HHhcCcCCCEEE
Confidence 45677777777776666644 6677777777777777666666667777633322211 234554 677788888888
Q ss_pred cCCCCcCccccccccC---------CCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEe
Q 047461 137 LRGSKSLKSLPSGIFN---------LEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLD 205 (312)
Q Consensus 137 l~~~~~~~~~~~~l~~---------~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 205 (312)
+++|...+.+|..+.. +++|++|++++|. +..+|... .++|+.|++++|.++.+|..++.+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 8887777777776544 8888889888854 44666543 5688899999999988888888999999999
Q ss_pred cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCC
Q 047461 206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~ 283 (312)
+++|.+.+.+|..++.+++|+.|++++|+..+.+|..+..+++|+.|++++|.+. .+|+.++.+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999998999999999999999999999999999999999999998876 89999999999999998877554
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=4.9e-25 Score=192.53 Aligned_cols=269 Identities=14% Similarity=0.171 Sum_probs=173.3
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCc
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKL 82 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L 82 (312)
+++.+.+..+....+ ..+..+++|++|++++|.+.+. +. +.. ++|++|++++|.+..++....+++|
T Consensus 45 ~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~-------~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L 112 (347)
T 4fmz_A 45 SITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDI-------SP-LSNLVKLTNLYIGTNKITDISALQNLTNL 112 (347)
T ss_dssp TCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred cccEEEEeCCccccc----hhhhhcCCccEEEccCCccccc-------hh-hhcCCcCCEEEccCCcccCchHHcCCCcC
Confidence 455666554443322 2377788888888888764221 11 344 7788888888877777655577788
Q ss_pred cEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCC----------------------cCCcEEEcCCC
Q 047461 83 MLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL----------------------NKLVTLNLRGS 140 (312)
Q Consensus 83 ~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l----------------------~~L~~L~l~~~ 140 (312)
++|++++|.+..++. +..+++|+.+....+.. ...+ . .+..+ ++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~-~~~~-~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHN-LSDL-S--PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTT-CCCC-G--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCC-cccc-c--chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC
Confidence 888888887776654 56666666443333211 1111 1 23444 44555555544
Q ss_pred CcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhh
Q 047461 141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSL 219 (312)
Q Consensus 141 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l 219 (312)
.+ ..++. +..+++|+.+++++|. +...+... .++|+.|++++|.++.++. +..+++|++|++++|.+.+. ..+
T Consensus 188 ~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 188 QI-EDISP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CC-CCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred cc-ccccc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhH
Confidence 42 22222 4445555555555532 22223222 4678888888888887776 77788888888888876553 347
Q ss_pred hcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCch
Q 047461 220 YRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAV 297 (312)
Q Consensus 220 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 297 (312)
..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++ ..+..+..+++|++|++++|++.+..++..++.+..+
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 338 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcccee
Confidence 7888899999988876553 35778899999999999988 4556788899999999999999887775544444443
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=7.7e-26 Score=204.71 Aligned_cols=277 Identities=16% Similarity=0.118 Sum_probs=199.5
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCC--CCC--cc
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKS--LPS--NL 77 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~--~~~--~~ 77 (312)
.+++.+.+..+... .......|.++++|++|++++|.+ ....+..+.. ++|++|++++|.+.. ++. ..
T Consensus 54 ~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 54 QDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQF------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp TTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTT------CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred ccccEEECcCCccc-ceECcccccccccCCEEeCCCCcc------CccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence 34556665544331 123346788899999999998774 2223455555 888899988888764 222 22
Q ss_pred CcCCccEEeCCCCcccch-hhh-cccCCCchh--cchhhccccccc----------------------CCC-------CC
Q 047461 78 SAEKLMLLEVPDSDIKRL-WDC-VKHYSKLNQ--IIHAACHKLIAK----------------------IPN-------PT 124 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~--l~~~~~~~~~~~----------------------~~~-------~~ 124 (312)
.+++|++|++++|.+..+ |.. +..+++|+. ++.+........ ++. ..
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 778888888888888865 443 677888884 443332111000 000 00
Q ss_pred CcCCCcCCcEEEcCCCCcCcccccccc---------------------------------------CCCcCcEEeccCCC
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPSGIF---------------------------------------NLEFLTKLDLSGCS 165 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~---------------------------------------~~~~L~~L~l~~~~ 165 (312)
.+..+++|++|++++|.+.+..|..+. ..++|++|++++|.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 122446899999999876544332221 12578899999866
Q ss_pred CCCCCCccc--cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhh
Q 047461 166 KLKRLPEIS--SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPEC 242 (312)
Q Consensus 166 ~l~~~p~~~--~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~ 242 (312)
..+..|... .++|+.|++++|.++++ |..++.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 544444332 57899999999999987 457889999999999999998888888999999999999999988888999
Q ss_pred hhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCccc
Q 047461 243 LGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 243 ~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~ 286 (312)
+..+++|+.|++++|+++.+|. .+..+++|++|++++|++.+..
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 9999999999999999997775 4688999999999999987643
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=203.20 Aligned_cols=245 Identities=18% Similarity=0.169 Sum_probs=165.8
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC---------
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL--------- 73 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~--------- 73 (312)
+++.+.|..+... ......|.++++|++|++++|.+.... ...+.. ++|++|++++|.+..+
T Consensus 57 ~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 57 HLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIP------LGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCSCC------TTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCEEECCCCccC--EeChhhhhCCccCCEEECCCCcCCccC------cccccCCCCCCEEECCCCccccCChhHccccc
Confidence 4555555444332 223456777777777777776542110 111222 4555555555544433
Q ss_pred ---------------CC-cc-CcCCccEEeCCCCcccchhh-hcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461 74 ---------------PS-NL-SAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL 135 (312)
Q Consensus 74 ---------------~~-~~-~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 135 (312)
+. .+ .+++|++|++++|.++.++. .+..+++|+.|...... +....+. .+..+++|++|
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~--~~~~l~~L~~L 205 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDY--SFKRLYRLKVL 205 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTT--CSCSCTTCCEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChh--hcccCccccee
Confidence 22 11 44455555555555544432 34455555532222110 0111222 67788999999
Q ss_pred EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCC
Q 047461 136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKR 211 (312)
Q Consensus 136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~ 211 (312)
++++|...+.++.......+|++|++++|. +..+|... .++|+.|++++|.++.++. .+..+++|++|++++|++
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred eCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 999998888888877777899999999964 55666422 5789999999999998764 477899999999999999
Q ss_pred CCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 212 LKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 212 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8888888999999999999999887777777888999999999999987
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.2e-25 Score=211.52 Aligned_cols=269 Identities=15% Similarity=0.137 Sum_probs=119.7
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccc-ccc-cccccc-----------------------ccCC--CC
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSL-FNG-ENKCKM-----------------------SYLQ--DP 55 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~-----------------------~~~~--~~ 55 (312)
.+++.+.+..+.. .+..+..|+++++|++|++++|. +.+ .-+... .++. .+
T Consensus 249 ~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 249 KDLTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp TTCCEEEEECCTT--CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred CCCCEEEecCCcC--CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 4556666655443 33445677888888888888876 533 100000 1122 22
Q ss_pred CC-CCccEEeeCCCCCC-CCCCccCcCCccEEeCCCCcccchhhhcccCCC-chh--cchhhcccccccCCCCCCcCCC-
Q 047461 56 GF-AEVKYLHWHGYPLK-SLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSK-LNQ--IIHAACHKLIAKIPNPTLMPRL- 129 (312)
Q Consensus 56 ~~-~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~--l~~~~~~~~~~~~~~~~~~~~l- 129 (312)
.. ++|++|++++|.+. .+|....+++|++|++++|.+..+|..+..+++ |+. ++.+. +..+|. .++.+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~----l~~lp~--~~~~~~ 400 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK----LKYIPN--IFDAKS 400 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC----CSSCCS--CCCTTC
T ss_pred ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc----Ccccch--hhhhcc
Confidence 22 44555555555444 444211444455555555554444444444544 542 22222 122332 33322
Q ss_pred -cCCcEEEcCCCCcCcccccccc-------CCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHHHHh-
Q 047461 130 -NKLVTLNLRGSKSLKSLPSGIF-------NLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIER- 197 (312)
Q Consensus 130 -~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~~~~- 197 (312)
++|++|++++|.+.+..|..+. .+++|++|++++|. +..+|... .++|+.|++++|.++.+|.....
T Consensus 401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 479 (636)
T 4eco_A 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479 (636)
T ss_dssp SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence 2445555555444444443333 33444445544432 22333211 23444444444444444332111
Q ss_pred -------cCCCCEEecCCCCCCCcCchhhh--cCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc------CCCCc-c
Q 047461 198 -------LLRLGYLDLSDCKRLKSLPSSLY--RLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA------KTNIE-R 261 (312)
Q Consensus 198 -------l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~------~n~l~-~ 261 (312)
+++|++|++++|++. .+|..++ .+++|+.|++++|.+.+ +|..+..+++|+.|+++ +|.+. .
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 114444444444433 3444443 44455555555544443 44444445555555552 23333 4
Q ss_pred cchHhhccCCCcEEEecCCcC
Q 047461 262 IPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 262 ~~~~l~~~~~L~~L~l~~n~~ 282 (312)
+|..+..+++|++|++++|.+
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCC
T ss_pred ChHHHhcCCCCCEEECCCCcC
Confidence 444445555555555555544
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.5e-25 Score=210.84 Aligned_cols=262 Identities=17% Similarity=0.168 Sum_probs=211.2
Q ss_pred cceEEEEeecCCccccCCCcc--hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-C
Q 047461 3 EKIEGMCLDMSKVKELHPNSN--TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-S 78 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~ 78 (312)
.+++.+++..+... ..+. .|+++++|++|++++|.+. ..++ .+.. ++|++|++++|.+..+|..+ .
T Consensus 305 ~~L~~L~L~~n~l~---~ip~~~~l~~l~~L~~L~L~~N~l~------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~ 374 (636)
T 4eco_A 305 EKIQIIYIGYNNLK---TFPVETSLQKMKKLGMLECLYNQLE------GKLP-AFGSEIKLASLNLAYNQITEIPANFCG 374 (636)
T ss_dssp GTCCEEECCSSCCS---SCCCHHHHTTCTTCCEEECCSCCCE------EECC-CCEEEEEESEEECCSSEEEECCTTSEE
T ss_pred CCCCEEECCCCcCC---ccCchhhhccCCCCCEEeCcCCcCc------cchh-hhCCCCCCCEEECCCCccccccHhhhh
Confidence 46677776655543 2344 7999999999999998752 2344 5555 89999999999988888766 7
Q ss_pred cCC-ccEEeCCCCcccchhhhcccC--CCch--hcchhhcccccccCCCCCCcC-------CCcCCcEEEcCCCCcCccc
Q 047461 79 AEK-LMLLEVPDSDIKRLWDCVKHY--SKLN--QIIHAACHKLIAKIPNPTLMP-------RLNKLVTLNLRGSKSLKSL 146 (312)
Q Consensus 79 l~~-L~~L~l~~~~~~~~~~~~~~l--~~L~--~l~~~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~ 146 (312)
++. |++|++++|.++.+|..+..+ ++|+ +++.+.. ....|. .++ .+++|++|++++|.+. .+
T Consensus 375 l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l---~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l 448 (636)
T 4eco_A 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI---GSVDGK--NFDPLDPTPFKGINVSSINLSNNQIS-KF 448 (636)
T ss_dssp ECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT---TTTTTC--SSCTTCSSCCCCCCEEEEECCSSCCC-SC
T ss_pred hcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC---CCcchh--hhcccccccccCCCCCEEECcCCccC-cC
Confidence 888 999999999999888776654 4788 4444442 223333 555 6789999999999955 66
Q ss_pred cccc-cCCCcCcEEeccCCCCCCCCCccccC----------CCCeEEcCCcccccchHHHH--hcCCCCEEecCCCCCCC
Q 047461 147 PSGI-FNLEFLTKLDLSGCSKLKRLPEISSG----------NISWLFLRGIAIEELPSSIE--RLLRLGYLDLSDCKRLK 213 (312)
Q Consensus 147 ~~~l-~~~~~L~~L~l~~~~~l~~~p~~~~~----------~L~~L~l~~~~l~~l~~~~~--~l~~L~~L~l~~n~~~~ 213 (312)
|..+ ..+++|++|++++|. +..+|..... +|+.|++++|.++.+|..+. .+++|++|++++|++.+
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC
Confidence 7654 458999999999965 4466654321 89999999999999998886 89999999999999887
Q ss_pred cCchhhhcCCCCCeEecc------CCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 214 SLPSSLYRLKSLGVLSLC------GCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 214 ~~~~~l~~l~~L~~L~l~------~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+|..++.+++|+.|+++ +|.+.+.+|..+..+++|+.|++++|.++.+|..+. ++|+.|++++|++..
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcc
Confidence 88889999999999994 567788999999999999999999999998988765 899999999998864
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.5e-24 Score=189.37 Aligned_cols=241 Identities=18% Similarity=0.244 Sum_probs=155.0
Q ss_pred chhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhccc
Q 047461 23 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKH 101 (312)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 101 (312)
..+..+++|++|+++++.+ ...+.+.. ++|++|++++|.+..++....+++|++|++++|.+..++ .+..
T Consensus 38 ~~~~~l~~L~~L~l~~~~i--------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~ 108 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKV--------ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQN 108 (347)
T ss_dssp ECHHHHTTCSEEECCSSCC--------CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred ccchhcccccEEEEeCCcc--------ccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcC
Confidence 3456789999999999664 22234555 899999999999998888558999999999999998874 5788
Q ss_pred CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCe
Q 047461 102 YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISW 180 (312)
Q Consensus 102 l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~ 180 (312)
+++|+.|...... +..++ .+..+++|++|++++|.....++. +..+++|++|++++|. +...+... .++|+.
T Consensus 109 l~~L~~L~l~~n~--i~~~~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 109 LTNLRELYLNEDN--ISDIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLTDLYS 181 (347)
T ss_dssp CTTCSEEECTTSC--CCCCG---GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred CCcCCEEECcCCc--ccCch---hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence 9999955443321 23333 377899999999999976665554 7788888888888854 33333332 467777
Q ss_pred EEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc---------------------hhhhcCCCCCeEeccCCCCCCcc
Q 047461 181 LFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP---------------------SSLYRLKSLGVLSLCGCSNLQRL 239 (312)
Q Consensus 181 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~---------------------~~l~~l~~L~~L~l~~~~~~~~~ 239 (312)
|++++|.+++++. +..+++|+.+++++|.+.+..+ . +..+++|++|++++|.+.+ +
T Consensus 182 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~ 258 (347)
T 4fmz_A 182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-I 258 (347)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C
T ss_pred EEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-C
Confidence 7777777666554 4444555555555544333221 1 4444555555555544332 2
Q ss_pred hhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 240 PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 240 p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
..+..+++|+.|++++|.++.++ .+..+++|++|++++|++.+
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCG
T ss_pred -hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCC
Confidence 23445555555555555555442 34555555666666555543
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=4e-25 Score=206.98 Aligned_cols=249 Identities=16% Similarity=0.097 Sum_probs=188.4
Q ss_pred hhcCCCCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccch---hhhcc
Q 047461 24 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRL---WDCVK 100 (312)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~ 100 (312)
.+..+++|++|++++|.+ ..++ .+..++|++|++++|..........+++|++|++++|.+... +..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l-------~~lp-~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-------KQFP-TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-------SSCC-CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred hccccccCCEEEcccccC-------cccc-cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 345555666666666543 1122 222266777777666422222233677888888888887755 56677
Q ss_pred cCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc-ccccCCCcCcEEeccCCCCCCCCCccc--cCC
Q 047461 101 HYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGN 177 (312)
Q Consensus 101 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~ 177 (312)
.+++|+.|...... ...++. .++.+++|++|++++|.+.+..+ ..+..+++|++|++++|......|... .++
T Consensus 374 ~~~~L~~L~L~~n~--l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG--AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp CCSCCCEEECCSCS--EEEECC--CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cCCcccEeECCCCc--cccchh--hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 88888844433321 334455 78889999999999998666666 567789999999999977555444432 578
Q ss_pred CCeEEcCCccccc--chHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461 178 ISWLFLRGIAIEE--LPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA 255 (312)
Q Consensus 178 L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 255 (312)
|+.|++++|.+++ +|..++.+++|++|++++|++.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 9999999999886 67778889999999999999888888889999999999999999888889999999999999999
Q ss_pred CCCCcccchHhhccC-CCcEEEecCCcCCc
Q 047461 256 KTNIERIPESIIQLF-VSGYLLLSYGIVED 284 (312)
Q Consensus 256 ~n~l~~~~~~l~~~~-~L~~L~l~~n~~~~ 284 (312)
+|+++.+|..+..++ +|++|++++|++..
T Consensus 530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 530 FNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 999998888888887 59999999998865
No 18
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=6e-26 Score=195.52 Aligned_cols=245 Identities=17% Similarity=0.208 Sum_probs=177.1
Q ss_pred CCccEEeeCCCCCC---CCCCcc-CcCCccEEeCCC-Cccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcC
Q 047461 58 AEVKYLHWHGYPLK---SLPSNL-SAEKLMLLEVPD-SDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNK 131 (312)
Q Consensus 58 ~~L~~L~l~~~~~~---~~~~~~-~l~~L~~L~l~~-~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~ 131 (312)
.+++.|+++++.+. .+|..+ .+++|++|++++ |.+. .+|..+..+++|+.|...... +...++. .++.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~--~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPD--FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCG--GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCH--HHhCCCC
Confidence 35777777777765 355544 677788888874 6665 566677777777744332211 1224554 6777888
Q ss_pred CcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cC-CCCeEEcCCcccc-cchHHHHhcCCCCEEecC
Q 047461 132 LVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SG-NISWLFLRGIAIE-ELPSSIERLLRLGYLDLS 207 (312)
Q Consensus 132 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~-~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~ 207 (312)
|++|++++|.+.+.+|..+..+++|++|++++|...+.+|... .. .|+.|++++|.++ .+|..++.+. |++|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 8888888888776778778888888888888866544555433 23 7888888888887 5667777776 8888888
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccc
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~ 286 (312)
+|.+.+..+..++.+++|+.|++++|.+.+..|. +..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 8888777888888888888888888877766665 677888888888888888 77888888888888888888887665
Q ss_pred cccccCCCCchhHHHhhhcceee
Q 047461 287 RIQHTNHTPAVRWQEIWQEVWLN 309 (312)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~ 309 (312)
+.. .+++.++.++...+.+.+
T Consensus 285 p~~--~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 285 PQG--GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCS--TTGGGSCGGGTCSSSEEE
T ss_pred CCC--ccccccChHHhcCCCCcc
Confidence 543 456667666665554443
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=8e-25 Score=210.39 Aligned_cols=263 Identities=15% Similarity=0.133 Sum_probs=173.5
Q ss_pred ceEEEEeecCCccccCCCcc--hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-Cc
Q 047461 4 KIEGMCLDMSKVKELHPNSN--TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-SA 79 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~l 79 (312)
+++.+.+..+... . .+. .|+++++|++|++++|.+ . .++ .+.. ++|++|++++|.+..+|..+ .+
T Consensus 549 ~L~~L~Ls~N~L~--~-ip~~~~l~~L~~L~~L~Ls~N~l-----~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l 617 (876)
T 4ecn_A 549 KIQIFYMGYNNLE--E-FPASASLQKMVKLGLLDCVHNKV-----R--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAF 617 (876)
T ss_dssp TCCEEECCSSCCC--B-CCCHHHHTTCTTCCEEECTTSCC-----C--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEE
T ss_pred CccEEEeeCCcCC--c-cCChhhhhcCCCCCEEECCCCCc-----c--cch-hhcCCCcceEEECcCCccccchHHHhhc
Confidence 4555555544433 2 223 667777777777777654 1 233 4444 67777777777766666544 56
Q ss_pred CC-ccEEeCCCCcccchhhhcccCCC--ch--hcchhhcccccccCCCCCCcC--CCcCCcEEEcCCCCcCcccccccc-
Q 047461 80 EK-LMLLEVPDSDIKRLWDCVKHYSK--LN--QIIHAACHKLIAKIPNPTLMP--RLNKLVTLNLRGSKSLKSLPSGIF- 151 (312)
Q Consensus 80 ~~-L~~L~l~~~~~~~~~~~~~~l~~--L~--~l~~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~- 151 (312)
++ |+.|++++|.+..+|..+..++. |+ +++.+........++. .++ .+++|++|++++|.+. .+|..+.
T Consensus 618 ~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~ 694 (876)
T 4ecn_A 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC--SMDDYKGINASTVTLSYNEIQ-KFPTELFA 694 (876)
T ss_dssp CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS--CTTTCCCCCEEEEECCSSCCC-SCCHHHHH
T ss_pred cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh--hhccccCCCcCEEEccCCcCC-ccCHHHHc
Confidence 66 77777777777766655544433 66 3333332211111211 222 3347888888887744 5665443
Q ss_pred CCCcCcEEeccCCCCCCCCCcccc----------CCCCeEEcCCcccccchHHHH--hcCCCCEEecCCCCCCCcCchhh
Q 047461 152 NLEFLTKLDLSGCSKLKRLPEISS----------GNISWLFLRGIAIEELPSSIE--RLLRLGYLDLSDCKRLKSLPSSL 219 (312)
Q Consensus 152 ~~~~L~~L~l~~~~~l~~~p~~~~----------~~L~~L~l~~~~l~~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~l 219 (312)
.+++|+.|++++|. +..+|.... ++|+.|++++|.++.+|..+. .+++|+.|++++|++.+ +|..+
T Consensus 695 ~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l 772 (876)
T 4ecn_A 695 TGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP 772 (876)
T ss_dssp TTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred cCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence 67888888888854 445554331 178888888888888887776 78888888888888766 67778
Q ss_pred hcCCCCCeEeccC------CCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 220 YRLKSLGVLSLCG------CSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 220 ~~l~~L~~L~l~~------~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+.+++|+.|++++ |.+.+.+|..+..+++|+.|++++|.++.+|..+. ++|+.|+|++|++..
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence 8888888888865 66677788888888888888888888887777654 688888888887754
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.8e-25 Score=213.48 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=147.5
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccc-ccc-ccccccccC-CCCCC-CCccEEeeCCCCCCCCCC--c
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSL-FNG-ENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSLPS--N 76 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~--~ 76 (312)
.+++.+.|..+.. ....+..|+++++|++|++++|. +.+ .-+...... ..+.. ++|++|++++|.+..+|. .
T Consensus 491 ~~L~~L~Ls~N~l--~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 491 KDLTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp TTCCEEEEESCTT--CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred CCCCEEECcCCCC--CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 4566777665543 33445788899999999999886 533 111001000 02222 578888888887777776 3
Q ss_pred c-CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcC-CcEEEcCCCCcCccccccccCCC
Q 047461 77 L-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNK-LVTLNLRGSKSLKSLPSGIFNLE 154 (312)
Q Consensus 77 ~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~ 154 (312)
+ .+++|+.|++++|.+..+| .+..+++|+.|...... +..+|. .+..+++ |++|++++|.+. .+|..+...+
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~--l~~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ--IEEIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC--CSCCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc--cccchH--HHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 4 7778888888888777776 66777777743332211 234554 6677777 777777777743 6666554443
Q ss_pred --cCcEEeccCCCCCCCCCccc-------cCCCCeEEcCCcccccchHHHH-hcCCCCEEecCCCCCCCcCchhhhcC--
Q 047461 155 --FLTKLDLSGCSKLKRLPEIS-------SGNISWLFLRGIAIEELPSSIE-RLLRLGYLDLSDCKRLKSLPSSLYRL-- 222 (312)
Q Consensus 155 --~L~~L~l~~~~~l~~~p~~~-------~~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l-- 222 (312)
+|+.|++++|...+.+|... ..+|+.|++++|.++.+|..+. .+++|+.|++++|++. .+|..+...
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~ 721 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD 721 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc
Confidence 36777777655433332211 1245566666666655555433 4555555555555443 333322211
Q ss_pred ------CCCCeEeccCCCCCCcchhhhh--CCCCCcEEeccCCCCcccchHhhccCCCcEEEecC
Q 047461 223 ------KSLGVLSLCGCSNLQRLPECLG--QLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSY 279 (312)
Q Consensus 223 ------~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~ 279 (312)
++|+.|++++|.+. .+|..+. .+++|+.|++++|.++.+|..+..+++|+.|+|++
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence 14555555554433 4444443 44455555555554444444444444444444433
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=8.5e-26 Score=194.59 Aligned_cols=243 Identities=16% Similarity=0.156 Sum_probs=192.7
Q ss_pred CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCC-CCCC-CCCCcc-CcCCccEEeCCCCccc-chhhhcccCC
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDCVKHYS 103 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~-~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~l~ 103 (312)
.+++.|+++++.+.+. ...+..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.+. .+|..+..++
T Consensus 50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 5788888888765220 034445555 7888888884 6644 455545 7888888888888887 6677788888
Q ss_pred Cchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCC-cCcEEeccCCCCCCCCCccc-cCCCC
Q 047461 104 KLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEIS-SGNIS 179 (312)
Q Consensus 104 ~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~~~p~~~-~~~L~ 179 (312)
+|+. ++.+.. ...++. .++.+++|++|++++|.+.+.+|..+..++ +|++|++++|...+..|... ...|+
T Consensus 126 ~L~~L~Ls~N~l---~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~ 200 (313)
T 1ogq_A 126 TLVTLDFSYNAL---SGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA 200 (313)
T ss_dssp TCCEEECCSSEE---ESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS
T ss_pred CCCEEeCCCCcc---CCcCCh--HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCccc
Confidence 8884 444442 224555 788899999999999997778898888887 99999999976554555443 23499
Q ss_pred eEEcCCccccc-chHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCC
Q 047461 180 WLFLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTN 258 (312)
Q Consensus 180 ~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~ 258 (312)
.|++++|.++. .|..++.+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus 201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 99999999984 566788899999999999998777666 7888999999999999988999999999999999999999
Q ss_pred Cc-ccchHhhccCCCcEEEecCCcC
Q 047461 259 IE-RIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 259 l~-~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
++ .+|.. ..+++|+.+++++|+.
T Consensus 280 l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 280 LCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp EEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred ccccCCCC-ccccccChHHhcCCCC
Confidence 99 67765 8899999999999983
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=8.4e-25 Score=204.82 Aligned_cols=272 Identities=18% Similarity=0.165 Sum_probs=143.5
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC--CCccCc
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL--PSNLSA 79 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~--~~~~~l 79 (312)
.+++.+++..+... ...+..|+++++|++|++++|.+.+.. +..+.. ++|++|++++|.+..+ +....+
T Consensus 81 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~l~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 152 (606)
T 3t6q_A 81 HRLDTLVLTANPLI--FMAETALSGPKALKHLFFIQTGISSID------FIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152 (606)
T ss_dssp TTCCEEECTTCCCS--EECTTTTSSCTTCCEEECTTSCCSCGG------GSCCTTCTTCCEEECCSSCCCCCCCCTTCCC
T ss_pred cccCeeeCCCCccc--ccChhhhcccccccEeeccccCcccCC------cchhccCCcccEEECCCCcccccCcccccCC
Confidence 45666666554432 334467888888999988887752221 223344 7788888888877665 444467
Q ss_pred CCccEEeCCCCcccchh-hhcccCCCch--hc--chhhcccc--------------------------------------
Q 047461 80 EKLMLLEVPDSDIKRLW-DCVKHYSKLN--QI--IHAACHKL-------------------------------------- 116 (312)
Q Consensus 80 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~--~l--~~~~~~~~-------------------------------------- 116 (312)
++|++|++++|.+..++ ..+..+++|+ .+ +.+.....
T Consensus 153 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232 (606)
T ss_dssp TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEEC
T ss_pred cccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheec
Confidence 77788888777776542 3444454444 11 11110000
Q ss_pred ---------------------------------cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccC
Q 047461 117 ---------------------------------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSG 163 (312)
Q Consensus 117 ---------------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 163 (312)
+..++ +..++.+++|++|++++|. ...+|..+..+++|++|++++
T Consensus 233 ~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp CCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTT
T ss_pred hhhccccccccChhHhchhhcCceeEEEeecCccCccC-HHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECcc
Confidence 00111 1124555666666666665 334555555555555555555
Q ss_pred CC------------------------CCCCCCccc---cCCCCeEEcCCcccccc---hHHHHhcCCCCEEecCCCCCCC
Q 047461 164 CS------------------------KLKRLPEIS---SGNISWLFLRGIAIEEL---PSSIERLLRLGYLDLSDCKRLK 213 (312)
Q Consensus 164 ~~------------------------~l~~~p~~~---~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n~~~~ 213 (312)
|. ....+|... .++|++|++++|.++.+ +..++.+++|++|++++|.+.+
T Consensus 311 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 43 222222211 34556666666655543 3345556666666666665555
Q ss_pred cCchhhhcCCCCCeEeccCCCCCCcchh-hhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCc
Q 047461 214 SLPSSLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 214 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
..+..++.+++|+.|++++|.+.+..|. .+..+++|+.|++++|.++ ..|..+..+++|++|++++|++.+
T Consensus 391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 5555555555555555555544433322 2445555555555555554 233444555555555555555443
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=9.6e-24 Score=183.10 Aligned_cols=260 Identities=16% Similarity=0.128 Sum_probs=198.2
Q ss_pred CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-CcCCccEEeCCCCcccchhhhcccCCCc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SAEKLMLLEVPDSDIKRLWDCVKHYSKL 105 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L 105 (312)
+++++|++++|.+.+ ..+..+.. ++|++|++++|.+..+ +..+ .+++|++|++++|.++.+|..+. ++|
T Consensus 52 ~~l~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKITE------IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp TTCCEEECCSSCCCC------BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCeEEECCCCcCCE------eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 689999999987522 12234555 8999999999998887 4444 88999999999999998876543 677
Q ss_pred hhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc--cccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEc
Q 047461 106 NQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 183 (312)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l 183 (312)
+.|...... +..++. ..++.+++|++|++++|.+.. ..+..+..+++|++|++++|. +..+|....++|+.|++
T Consensus 124 ~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 124 QELRVHENE--ITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL 199 (330)
T ss_dssp CEEECCSSC--CCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred cEEECCCCc--ccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEEC
Confidence 744333211 222221 146789999999999998643 556678889999999999954 55566555579999999
Q ss_pred CCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc
Q 047461 184 RGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI 262 (312)
Q Consensus 184 ~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 262 (312)
++|.++.+ +..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 99999976 567889999999999999988877778899999999999998765 7888899999999999999999976
Q ss_pred chH-hh------ccCCCcEEEecCCcCCcc-ccccccCCCCchhHHH
Q 047461 263 PES-II------QLFVSGYLLLSYGIVEDT-LRIQHTNHTPAVRWQE 301 (312)
Q Consensus 263 ~~~-l~------~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~ 301 (312)
+.. +. ..+.++.+++++|++... .....+..++.++.++
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred ChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence 643 32 247889999999998542 2223444556665543
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.4e-25 Score=192.89 Aligned_cols=216 Identities=25% Similarity=0.286 Sum_probs=185.3
Q ss_pred CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461 78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT 157 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 157 (312)
....++.|++++|.+..+|..+..+++|+.|...... +..+|. .++.+++|++|++++|.+. .+|..+..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~--l~~lp~--~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG--LMELPD--TMQQFAGLETLTLARNPLR-ALPASIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC--CCCCCS--CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC--ccchhH--HHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence 3478999999999999999888889999954443321 346666 8899999999999999855 8898899999999
Q ss_pred EEeccCCCCCCCCCccc-----------cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC
Q 047461 158 KLDLSGCSKLKRLPEIS-----------SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG 226 (312)
Q Consensus 158 ~L~l~~~~~l~~~p~~~-----------~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 226 (312)
+|++++|+..+.+|... .++|++|++++|.++.+|..++.+++|++|++++|.+.+ +|..++.+++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence 99999998888877542 578999999999999999999999999999999998775 666799999999
Q ss_pred eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHH
Q 047461 227 VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQ 300 (312)
Q Consensus 227 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 300 (312)
+|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++.+..+. .+.+++.+++.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l 306 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCII 306 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEE
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEE
Confidence 9999999999999999999999999999998876 8898999999999999999999886653 34456655544
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=8.9e-24 Score=191.80 Aligned_cols=243 Identities=18% Similarity=0.209 Sum_probs=117.2
Q ss_pred hcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCC
Q 047461 25 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS 103 (312)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 103 (312)
+..+++|++|++++|.+.+. +. +.. ++|++|++++|.+..++....+++|++|++++|.+..++. +..++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~-------~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~ 134 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDI-------TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT 134 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred hhhhcCCCEEECCCCccCCc-------hh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence 56677777777777654211 11 333 5666666666665555553356666666666666555433 44555
Q ss_pred Cchhc--chhhccccc--------------ccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCC
Q 047461 104 KLNQI--IHAACHKLI--------------AKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKL 167 (312)
Q Consensus 104 ~L~~l--~~~~~~~~~--------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 167 (312)
+|+.| +.+...... ..+.....++.+++|++|++++|.+ ..++. +..+++|++|++++|...
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTNLESLIATNNQIS 212 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECCSSCCC
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCChh-hccCCCCCEEEecCCccc
Confidence 55522 222211100 0000001355666777777777763 33332 556666666666664432
Q ss_pred CCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC
Q 047461 168 KRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247 (312)
Q Consensus 168 ~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 247 (312)
...|....++|+.|++++|.+++++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..++
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 287 (466)
T 1o6v_A 213 DITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287 (466)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred ccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC
Confidence 2222111355666666666555543 24445555555555555443322 4444555555555544333222 33444
Q ss_pred CCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 248 SPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 248 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+|+.|++++|.++.++. +..+++|+.|++++|++.+
T Consensus 288 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp TCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred ccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence 44444444444443332 3344444444444444433
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=5.6e-25 Score=205.99 Aligned_cols=271 Identities=15% Similarity=0.078 Sum_probs=213.8
Q ss_pred hcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCC
Q 047461 25 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS 103 (312)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 103 (312)
+..+++|+.|+++++.+ ...+ .+.. ++|++|++++|.+..+|.. .+++|++|++++|..... ..+..++
T Consensus 281 ~~~l~~L~~L~l~~~~~-------~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~-~~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSI-------KYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSIS-FKKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCCC-------CCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEE-CCCCCCT
T ss_pred cccCCCCCEEEecCccc-------hhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccc-hhhccCC
Confidence 77889999999999764 1222 5555 8999999999999989966 899999999999854321 2456888
Q ss_pred Cchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCC--ccc-cCCC
Q 047461 104 KLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP--EIS-SGNI 178 (312)
Q Consensus 104 ~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p--~~~-~~~L 178 (312)
+|+. ++.+.... ....+. .++.+++|++|++++|. ...+|..+..+++|+.|++++|...+..| ... .++|
T Consensus 351 ~L~~L~ls~n~l~~-~~~~~~--~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 351 SLSYLDLSRNALSF-SGCCSY--SDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp TCCEEECCSSCEEE-EEECCH--HHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCEEECcCCccCC-Ccchhh--hhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 8884 44444221 111244 67889999999999998 55577778899999999999976444433 111 5799
Q ss_pred CeEEcCCccccc-chHHHHhcCCCCEEecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 179 SWLFLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 179 ~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
+.|++++|.++. .|..++.+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 999999999986 56678899999999999999877 4788889999999999999999888889999999999999999
Q ss_pred CCCcc-cchHhhccCCCcEEEecCCcCCccccccccCCCC-chhHHHhhhcceeeec
Q 047461 257 TNIER-IPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTP-AVRWQEIWQEVWLNVC 311 (312)
Q Consensus 257 n~l~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (312)
|+++. .|..+..+++|++|++++|++... +.. +..+| .++.++...++|.+.|
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~-~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGI-LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESC-GGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCccc-CHh-HhhhcccCcEEEccCCCcccCC
Confidence 99995 478899999999999999999753 322 44555 3776666666676665
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=204.81 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=94.9
Q ss_pred CCCCeEEcCCcccccchH--HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC-CcchhhhhCCCCCcEE
Q 047461 176 GNISWLFLRGIAIEELPS--SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL-QRLPECLGQLSSPITF 252 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L 252 (312)
++|+.|++++|.++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 455566666665554432 4566777777777777776667777777888888888887765 4677778888888888
Q ss_pred eccCCCCccc-chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 253 NLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 253 ~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
++++|.++.+ |..+..+++|++|++++|++.+.. ...+.+++.++.++...+.|.+.|
T Consensus 476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCC
Confidence 8888888854 677888888888888888887643 334456666666665555555554
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.3e-24 Score=188.46 Aligned_cols=279 Identities=15% Similarity=0.085 Sum_probs=199.8
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--Cc
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SA 79 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l 79 (312)
.+++.+.+..+... +.....|..+++|++|++++|.+. ...+..+.. ++|++|++++|.+..++... .+
T Consensus 69 ~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 140 (390)
T 3o6n_A 69 RQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIR------YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140 (390)
T ss_dssp CCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCC------cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC
Confidence 45666666554433 334467899999999999998752 222344555 88999999999998888753 78
Q ss_pred CCccEEeCCCCcccchh-hhcccCCCchh--cchhhccccc-ccCCC----------CCCcCCCcCCcEEEcCCCCcCcc
Q 047461 80 EKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLI-AKIPN----------PTLMPRLNKLVTLNLRGSKSLKS 145 (312)
Q Consensus 80 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~-~~~~~----------~~~~~~l~~L~~L~l~~~~~~~~ 145 (312)
++|++|++++|.+..++ ..+..+++|+. ++.+...... ..++. ...+...++|++|++++|. ...
T Consensus 141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~ 219 (390)
T 3o6n_A 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INV 219 (390)
T ss_dssp TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCE
T ss_pred CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCe-eee
Confidence 99999999999988765 45788888884 4444322110 00000 0011222345555555555 233
Q ss_pred ccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461 146 LPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLK 223 (312)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 223 (312)
+|. ..+++|+.|++++|. +...+... .++|+.|++++|.++++ |..++.+++|++|++++|++.+ ++..++.++
T Consensus 220 ~~~--~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 220 VRG--PVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp EEC--CCCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred ccc--cccccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence 333 235789999999965 44445443 58999999999999976 6678899999999999998755 566667899
Q ss_pred CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCch
Q 047461 224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAV 297 (312)
Q Consensus 224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 297 (312)
+|+.|++++|.+. .+|..+..+++|+.|++++|.++.++ +..+++|++|++++|++........+..++..
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP 366 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence 9999999998765 67778888999999999999999776 67889999999999999765555554454443
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.1e-23 Score=182.63 Aligned_cols=239 Identities=15% Similarity=0.155 Sum_probs=194.2
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccch-hhhcccCCCc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRL-WDCVKHYSKL 105 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~-~~~~~~l~~L 105 (312)
.+++.++++++.+ ..++..+. +++++|++++|.+..++.. + .+++|++|++++|.++.+ |..+..+++|
T Consensus 31 c~l~~l~~~~~~l-------~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 31 CHLRVVQCSDLGL-------EKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp EETTEEECTTSCC-------CSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCeEEEecCCCc-------cccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 3788888887543 22333222 7899999999999888763 3 899999999999999977 6788999999
Q ss_pred hh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC--CCCccc--cCCCC
Q 047461 106 NQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS--SGNIS 179 (312)
Q Consensus 106 ~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~--~~p~~~--~~~L~ 179 (312)
+. ++.+. +..++. .+. ++|++|++++|.+.+..+..+..+++|++|++++|.... ..+... .++|+
T Consensus 103 ~~L~Ls~n~----l~~l~~--~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 103 ERLYLSKNQ----LKELPE--KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp CEEECCSSC----CSBCCS--SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CEEECCCCc----CCccCh--hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 94 44444 344554 443 689999999999666555567889999999999965432 222221 57999
Q ss_pred eEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461 180 WLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI 259 (312)
Q Consensus 180 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l 259 (312)
.|++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 175 ~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp EEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred EEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 99999999999886543 7999999999998888888899999999999999988877777889999999999999999
Q ss_pred cccchHhhccCCCcEEEecCCcCCcc
Q 047461 260 ERIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 260 ~~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
+.+|..+..+++|++|++++|++.+.
T Consensus 253 ~~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 253 VKVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp SSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred ccCChhhccCCCcCEEECCCCcCCcc
Confidence 99999999999999999999999763
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.5e-23 Score=188.88 Aligned_cols=196 Identities=19% Similarity=0.248 Sum_probs=101.8
Q ss_pred CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461 78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT 157 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 157 (312)
.+++|++|++++|.+..++ .+..+++|+.|...... ....+ .++.+++|++|++++|.+. .++ .+..+++|+
T Consensus 175 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l~~~~---~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~ 246 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ--ISDIT---PLGILTNLDELSLNGNQLK-DIG-TLASLTNLT 246 (466)
T ss_dssp TCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC--CCCCG---GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCS
T ss_pred cCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc--ccccc---cccccCCCCEEECCCCCcc-cch-hhhcCCCCC
Confidence 4455556666655555442 24455555533222210 11111 2344555666666665532 222 244556666
Q ss_pred EEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC
Q 047461 158 KLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL 236 (312)
Q Consensus 158 ~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 236 (312)
+|++++|... ..+... .++|+.|++++|.++.++. ++.+++|++|++++|++.+..+ ++.+++|+.|++++|.+.
T Consensus 247 ~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 247 DLDLANNQIS-NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp EEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccc-cchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCC
Confidence 6666664322 222222 4556666666666665554 5555666666666665544322 455666666666666555
Q ss_pred CcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461 237 QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI 288 (312)
Q Consensus 237 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 288 (312)
+..| +..+++|+.|++++|.++.+ +.+..+++|+.|++++|++.+..++
T Consensus 323 ~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~ 371 (466)
T 1o6v_A 323 DISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPL 371 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGG
T ss_pred Cchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchh
Confidence 4443 44566666666666666654 2355566666666666666555543
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=3.2e-24 Score=198.55 Aligned_cols=270 Identities=17% Similarity=0.146 Sum_probs=179.0
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCc-c-CcC
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN-L-SAE 80 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~-~l~ 80 (312)
.++.+++..+... +.....|.++++|++|++++|.+. ...+..+.. ++|++|++++|.+..++.. + .++
T Consensus 27 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 27 AMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 4566666655443 333467889999999999998752 222344555 8899999999988887764 3 788
Q ss_pred CccEEeCCCCcccch--hhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccC------
Q 047461 81 KLMLLEVPDSDIKRL--WDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN------ 152 (312)
Q Consensus 81 ~L~~L~l~~~~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------ 152 (312)
+|++|++++|.+..+ +..+..+++|+.|....... ...++. ..++.+++|++|++++|.+.+..|..+..
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET-FSEIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-CCEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCcc-ccccCH-hhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 999999999988743 45677888888554433211 222221 15777888888888888766656655544
Q ss_pred ------------------CCcCcEEeccCCCCCCC----CCcc-------------------------------------
Q 047461 153 ------------------LEFLTKLDLSGCSKLKR----LPEI------------------------------------- 173 (312)
Q Consensus 153 ------------------~~~L~~L~l~~~~~l~~----~p~~------------------------------------- 173 (312)
+++|++|++++|...+. .+..
T Consensus 177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 45556666655432220 0000
Q ss_pred ---------------------------------------------------ccCCCCeEEcCCcccccchHHH-HhcCCC
Q 047461 174 ---------------------------------------------------SSGNISWLFLRGIAIEELPSSI-ERLLRL 201 (312)
Q Consensus 174 ---------------------------------------------------~~~~L~~L~l~~~~l~~l~~~~-~~l~~L 201 (312)
...+++.+++++|.++.+|..+ +.+++|
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L 336 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence 0124556666666666677665 468888
Q ss_pred CEEecCCCCCCCcCch---hhhcCCCCCeEeccCCCCCCcc--hhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEE
Q 047461 202 GYLDLSDCKRLKSLPS---SLYRLKSLGVLSLCGCSNLQRL--PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLL 276 (312)
Q Consensus 202 ~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~ 276 (312)
++|++++|++.+.+|. .++.+++|++|++++|.+.+.. +..+..+++|+.|++++|+++.+|..+..+++|++|+
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN 416 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEE
Confidence 8888888887765543 2567778888888887765432 2457778888888888888887777777777777777
Q ss_pred ecCCcCC
Q 047461 277 LSYGIVE 283 (312)
Q Consensus 277 l~~n~~~ 283 (312)
+++|.+.
T Consensus 417 Ls~N~l~ 423 (549)
T 2z81_A 417 LSSTGIR 423 (549)
T ss_dssp CTTSCCS
T ss_pred CCCCCcc
Confidence 7777764
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.1e-23 Score=182.94 Aligned_cols=216 Identities=17% Similarity=0.212 Sum_probs=103.5
Q ss_pred CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccch-hhhcccCCCchh--cchhhcccccccCCCCCCcCCCcCC
Q 047461 58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRL-WDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKL 132 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L 132 (312)
+++++|++++|.+..++. .+ .+++|++|++++|.++.+ +..+..+++|+. ++.+. +..++. .+. ++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~l~~--~~~--~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH----LVEIPP--NLP--SSL 125 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC----CCSCCS--SCC--TTC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc----CCccCc--ccc--ccC
Confidence 455666666655555433 22 555666666666655544 344555555552 33222 223332 222 455
Q ss_pred cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC--CCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461 133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC 209 (312)
Q Consensus 133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~--~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 209 (312)
++|++++|.+....+..+..+++|++|++++|.... ..+... ..+|+.|++++|.++.+|..+. ++|++|++++|
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSS
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCC
Confidence 555555555332222234455555555555543210 111111 1145555555555555443322 34555555555
Q ss_pred CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461 210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~ 283 (312)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++|++++|++.
T Consensus 204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence 54444444445555555555555544444444445555555555555555555554555555555555555543
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=205.28 Aligned_cols=271 Identities=17% Similarity=0.134 Sum_probs=163.3
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-Cc
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SA 79 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l 79 (312)
..++.++|..+.... .....|.++++|++|++++|.. .....+..+.. ++|++|++++|.+..+ |..+ .+
T Consensus 24 ~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp TTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCcCEEECCCCcCCc--cChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 456667766655432 3346678888888888888642 11122445555 7888888888887765 3344 77
Q ss_pred CCccEEeCCCCcccc-hhhh--cccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCC-
Q 047461 80 EKLMLLEVPDSDIKR-LWDC--VKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNL- 153 (312)
Q Consensus 80 ~~L~~L~l~~~~~~~-~~~~--~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~- 153 (312)
++|++|++++|.+.. .+.. +..+++|+. ++.+. +..+..+..++.+++|++|++++|.+.+..+..+..+
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~----l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ----IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC----CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc----ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 888888888887764 3433 677788874 44443 2222221256777888888888776544434333222
Q ss_pred -Cc------------------------------CcEEeccCCCCCCCCCcc-----------------------------
Q 047461 154 -EF------------------------------LTKLDLSGCSKLKRLPEI----------------------------- 173 (312)
Q Consensus 154 -~~------------------------------L~~L~l~~~~~l~~~p~~----------------------------- 173 (312)
++ |+.|++++|......+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 23 555555554221111100
Q ss_pred -----------ccCCCCeEEcCCcccccch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchh
Q 047461 174 -----------SSGNISWLFLRGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE 241 (312)
Q Consensus 174 -----------~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~ 241 (312)
...+++.|++++|.++.++ ..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 0134666666666665442 3455666677777777666666666666677777777777666655566
Q ss_pred hhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCCc
Q 047461 242 CLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 242 ~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~ 284 (312)
.+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+.+
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 6667777777777777766444 345667777777777776654
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=7.1e-24 Score=181.96 Aligned_cols=221 Identities=19% Similarity=0.199 Sum_probs=116.0
Q ss_pred CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccch---hhhcccCCCchh--cchhhcccccccCCCCCCcCCCc
Q 047461 58 AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRL---WDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLN 130 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~ 130 (312)
+++++|++++|.+..++... .+++|++|++++|.+... +..+..+++|+. ++.+. +..++. .+..++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~----i~~l~~--~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG----VITMSS--NFLGLE 101 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS----EEEEEE--EEETCT
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc----cccChh--hcCCCC
Confidence 34455555555544444321 444555555555544422 233334444442 22222 122222 344455
Q ss_pred CCcEEEcCCCCcCcccc-ccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc--chHHHHhcCCCCEEe
Q 047461 131 KLVTLNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE--LPSSIERLLRLGYLD 205 (312)
Q Consensus 131 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~ 205 (312)
+|++|++++|.+.+..+ ..+..+++|++|++++|......+... .++|++|++++|.+++ +|..++.+++|++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 56666666555322222 234455566666665543222222211 2456666666666553 455556666667777
Q ss_pred cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccC-CCcEEEecCCcCC
Q 047461 206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLF-VSGYLLLSYGIVE 283 (312)
Q Consensus 206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~-~L~~L~l~~n~~~ 283 (312)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ ..|..+..++ +|++|++++|++.
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 7666666555666666666777777666655554555666666777777777666 3444555553 6677777776665
Q ss_pred c
Q 047461 284 D 284 (312)
Q Consensus 284 ~ 284 (312)
.
T Consensus 262 ~ 262 (306)
T 2z66_A 262 C 262 (306)
T ss_dssp C
T ss_pred c
Confidence 4
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=3.8e-23 Score=179.48 Aligned_cols=258 Identities=17% Similarity=0.110 Sum_probs=196.8
Q ss_pred CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchhhhcccCCCc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLWDCVKHYSKL 105 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L 105 (312)
+++++|++++|.+. ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|.+..+|..+. ++|
T Consensus 54 ~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp TTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 68999999998752 222344555 899999999999887743 34 78999999999999998876554 778
Q ss_pred hhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc--cccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEc
Q 047461 106 NQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 183 (312)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l 183 (312)
+.|...... +..++. ..++.+++|++|++++|.+.. ..+..+..+ +|++|++++|. +..+|....++|+.|++
T Consensus 126 ~~L~l~~n~--i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l 200 (332)
T 2ft3_A 126 VELRIHDNR--IRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHL 200 (332)
T ss_dssp CEEECCSSC--CCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBC
T ss_pred CEEECCCCc--cCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEEC
Confidence 844433211 333332 247889999999999998642 455666666 89999999954 55566655579999999
Q ss_pred CCcccccch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc
Q 047461 184 RGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI 262 (312)
Q Consensus 184 ~~~~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 262 (312)
++|.++.++ ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 999999876 56888999999999999988877778999999999999998765 7888899999999999999999976
Q ss_pred ch-Hhhc------cCCCcEEEecCCcCCc-cccccccCCCCchhHH
Q 047461 263 PE-SIIQ------LFVSGYLLLSYGIVED-TLRIQHTNHTPAVRWQ 300 (312)
Q Consensus 263 ~~-~l~~------~~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~ 300 (312)
+. .+.. .+.|+.|++++|++.. ......+..++.++.+
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred ChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 64 3332 4678999999999862 1222334455555544
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.1e-23 Score=197.84 Aligned_cols=186 Identities=19% Similarity=0.126 Sum_probs=102.6
Q ss_pred CcCCCcCCcEEEcCCCCcCcccc-ccccCCCcCcEEeccCCCCC--------------------------CCCCccc--c
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKL--------------------------KRLPEIS--S 175 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l--------------------------~~~p~~~--~ 175 (312)
.++.+++|++|++++|.+.+.+| ..+.++++|++|++++|... +..|... .
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 45555666666666665444443 23444555555555554311 1122211 3
Q ss_pred CCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCc--------hhhhcCCCCCeEeccCCCCCCcchhhhhCC
Q 047461 176 GNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLP--------SSLYRLKSLGVLSLCGCSNLQRLPECLGQL 246 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l 246 (312)
++|+.|++++|.++.++. .++.+++|++|++++|++.+..+ ..++.+++|+.|++++|.+..-.+..+.++
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 456677777776666554 35566667777777666543211 124566667777776665543223346667
Q ss_pred CCCcEEeccCCCCcccchH-hhccCCCcEEEecCCcCCccccccccC-CCCchhHHHhhhcceeeec
Q 047461 247 SSPITFNLAKTNIERIPES-IIQLFVSGYLLLSYGIVEDTLRIQHTN-HTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 247 ~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 311 (312)
++|+.|++++|.++.+|.. +..+++|+.|++++|.+.+..+. .+. .++.++.++...++|.|.|
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK-VFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH-HHHHHHTTCSEEECTTCCCCBCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh-HhcccccccCEEEccCCCcccCC
Confidence 7777777777777755543 45667777777777766553322 111 2344444455566666665
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=4.1e-23 Score=192.95 Aligned_cols=261 Identities=15% Similarity=0.080 Sum_probs=193.9
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcC
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAE 80 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~ 80 (312)
+++.+.+..+.. .+.....|..+++|++|++++|.+.+ ..+..+.. ++|++|++++|.+..+|... .++
T Consensus 76 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 76 QVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp CCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCC------CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 455555554443 33444688999999999999987522 22334455 89999999999998888753 789
Q ss_pred CccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcC-------------------CcEEEcC
Q 047461 81 KLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNK-------------------LVTLNLR 138 (312)
Q Consensus 81 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~-------------------L~~L~l~ 138 (312)
+|++|++++|.+..++ ..+..+++|+. ++.+.... + .++.+++ |++|+++
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~----~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----V----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB----C----CGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC----c----ChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 9999999999998765 46788899984 44443221 1 1233344 5555555
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCc
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLP 216 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (312)
+|. ...++.. ..++|+.|++++|...+ .+... .++|+.|++++|.++.+ |..++.+++|+.|++++|.+.+ +|
T Consensus 220 ~n~-l~~~~~~--~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~ 294 (597)
T 3oja_B 220 HNS-INVVRGP--VNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN 294 (597)
T ss_dssp SSC-CCEEECS--CCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EE
T ss_pred CCc-ccccccc--cCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CC
Confidence 554 2233322 24689999999965443 44333 68999999999999976 6778899999999999998766 56
Q ss_pred hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461 217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI 288 (312)
Q Consensus 217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 288 (312)
..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++ +..+++|++|++++|++......
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHH
Confidence 66778999999999998776 68888899999999999999999775 57789999999999998754433
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=3.4e-23 Score=187.26 Aligned_cols=220 Identities=21% Similarity=0.247 Sum_probs=181.5
Q ss_pred CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCC
Q 047461 58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKL 132 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L 132 (312)
+++++|++++|.+..++. .+ .+++|++|++++|.+..++ ..+..+++|+. |+.+. +..++. ..++.+++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~-~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW----LTVIPS-GAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CSBCCT-TTSSSCTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc----CCccCh-hhhcccCCC
Confidence 689999999998887754 33 8899999999999988765 56788899984 44444 333432 257889999
Q ss_pred cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461 133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC 209 (312)
Q Consensus 133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 209 (312)
++|++++|.+....+..+..+++|++|++++|+.++.++... .++|+.|++++|.++++|. +..+++|++|++++|
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGN 228 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTS
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCC
Confidence 999999998554444567889999999999988777766532 5789999999999998864 677889999999999
Q ss_pred CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461 210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~ 283 (312)
.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++.
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 9988888899999999999999999888888889999999999999999997664 4678999999999999863
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.3e-23 Score=186.68 Aligned_cols=220 Identities=22% Similarity=0.276 Sum_probs=181.6
Q ss_pred CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCC
Q 047461 58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKL 132 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L 132 (312)
.+++.|++++|.+..++.. + .+++|++|++++|.+..++ ..+..+++|+. ++.+. +..++. ..+..+++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~----l~~~~~-~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR----LTTIPN-GAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC----CSSCCT-TTSCSCSSC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc----CCeeCH-hHhhccccC
Confidence 6889999999998877643 3 8899999999999998766 56788999994 44444 333332 257889999
Q ss_pred cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461 133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC 209 (312)
Q Consensus 133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n 209 (312)
++|++++|.+....+..+..+++|++|++++|+.+..++... .++|+.|++++|.++.+|. +..+++|++|++++|
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN 217 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC
Confidence 999999998555445577889999999999988777666432 5789999999999998874 678889999999999
Q ss_pred CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461 210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~ 283 (312)
.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+|. .+..+++|+.|++++|++.
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9888888889999999999999999888888889999999999999999997664 5678999999999999873
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=5.1e-24 Score=197.20 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=97.6
Q ss_pred CCCcCcEEeccCCCCCCCCCcc-----ccCCCCeEEcCCcccccchH---HHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461 152 NLEFLTKLDLSGCSKLKRLPEI-----SSGNISWLFLRGIAIEELPS---SIERLLRLGYLDLSDCKRLKSLPSSLYRLK 223 (312)
Q Consensus 152 ~~~~L~~L~l~~~~~l~~~p~~-----~~~~L~~L~l~~~~l~~l~~---~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 223 (312)
.+++|++|++++|...+..|.. ..++|+.|++++|.++.++. .++.+++|++|++++|++. .+|..++.++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 3566666666665433322211 13567777777777776552 3566777777777777654 4565566666
Q ss_pred CCCeEeccCCCCCCcchhh------------------hhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461 224 SLGVLSLCGCSNLQRLPEC------------------LGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 224 ~L~~L~l~~~~~~~~~p~~------------------~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
+|++|++++|.+.+ +|.. ...+++|+.|++++|+++.+|. ...+++|++|++++|++.+.
T Consensus 411 ~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 411 KMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp TCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred cccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc
Confidence 66666666665431 1111 1257788888888888887776 45688889999999888764
Q ss_pred ccccccCCCCchhHHHhhhcceeeec
Q 047461 286 LRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+ ..+..++.++.++...+.|.+.|
T Consensus 489 ~~-~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 489 PD-GIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CT-TGGGGCTTCCEEECCSSCBCCCH
T ss_pred CH-HHHhcCcccCEEEecCCCccCCC
Confidence 33 33445666666665566665554
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.8e-23 Score=193.00 Aligned_cols=109 Identities=21% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCCCeEEcCCcccccc---hHHHHhcCCCCEEecCCCCCCCc-----------------------Cc-hhhhcCCCCCeE
Q 047461 176 GNISWLFLRGIAIEEL---PSSIERLLRLGYLDLSDCKRLKS-----------------------LP-SSLYRLKSLGVL 228 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n~~~~~-----------------------~~-~~l~~l~~L~~L 228 (312)
++|+.|++++|.++.. +..+..+++|++|++++|.+.+. .+ ..+..+++|++|
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 4566666666666543 45555666666666666543322 22 234455555666
Q ss_pred eccCCCCCCcchhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCCcCCc
Q 047461 229 SLCGCSNLQRLPECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 229 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
++++|.+.+..|..+.++++|+.|++++|.++ .+|..+..+++|++|++++|++.+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence 66555555555556666666666666666665 456666666777777777776654
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=190.33 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=134.0
Q ss_pred CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC--CCCccc--cCCCCeEEcCCccccc-chHH-HHhcCC
Q 047461 127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS--SGNISWLFLRGIAIEE-LPSS-IERLLR 200 (312)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~--~~p~~~--~~~L~~L~l~~~~l~~-l~~~-~~~l~~ 200 (312)
+.+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|... .++|+.|++++|.++. +|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 577899999999999877788889999999999999965432 222211 5799999999999997 8864 677899
Q ss_pred CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEecC
Q 047461 201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLSY 279 (312)
Q Consensus 201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~ 279 (312)
|++|++++|++.+..+..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+|.. +..+++|++|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 99999999998887776543 68999999998876 8888888999999999999999988876 88999999999999
Q ss_pred CcCCcccc
Q 047461 280 GIVEDTLR 287 (312)
Q Consensus 280 n~~~~~~~ 287 (312)
|++...-+
T Consensus 478 N~~~c~c~ 485 (520)
T 2z7x_B 478 NPWDCSCP 485 (520)
T ss_dssp SCBCCCHH
T ss_pred CCCcccCC
Confidence 99876443
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=9.3e-23 Score=189.32 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=133.0
Q ss_pred CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc-----ccCCCCeEEcCCccccc-chHH-HHhcC
Q 047461 127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI-----SSGNISWLFLRGIAIEE-LPSS-IERLL 199 (312)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~-----~~~~L~~L~l~~~~l~~-l~~~-~~~l~ 199 (312)
+.+++|++|++++|.+.+..|..+..+++|++|++++|. +..++.. ..++|+.|++++|.++. +|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 677899999999999888788889999999999999964 5544421 15789999999999997 7754 66789
Q ss_pred CCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEec
Q 047461 200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLS 278 (312)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~ 278 (312)
+|++|++++|++.+..+..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+|.. +..+++|+.|+++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 999999999998877666443 68999999998765 7888888999999999999999998887 8899999999999
Q ss_pred CCcCCcccc
Q 047461 279 YGIVEDTLR 287 (312)
Q Consensus 279 ~n~~~~~~~ 287 (312)
+|++...-+
T Consensus 506 ~N~~~c~c~ 514 (562)
T 3a79_B 506 DNPWDCTCP 514 (562)
T ss_dssp SCCBCCCHH
T ss_pred CCCcCCCcc
Confidence 999876433
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=7.5e-23 Score=179.11 Aligned_cols=248 Identities=15% Similarity=0.162 Sum_probs=190.3
Q ss_pred CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchhhh-cccCCC
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLWDC-VKHYSK 104 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~-~~~l~~ 104 (312)
++|++|++++|.+. ......+.. ++|++|++++|.+..++.. + .+++|++|++++|.++.++.. +..+++
T Consensus 52 ~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 52 EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 48999999998752 112224555 8999999999998877543 3 889999999999999988765 788999
Q ss_pred chhc--chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCC
Q 047461 105 LNQI--IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNIS 179 (312)
Q Consensus 105 L~~l--~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~ 179 (312)
|+.| +.+. +..++....++.+++|++|++++|...+.+ +..+..+++|++|++++|...+..|... .++|+
T Consensus 126 L~~L~L~~n~----l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 201 (353)
T 2z80_A 126 LTFLNLLGNP----YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201 (353)
T ss_dssp CSEEECTTCC----CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCEEECCCCC----CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence 9944 4444 333332126788999999999998545554 5578889999999999976443333322 46899
Q ss_pred eEEcCCcccccchHHH-HhcCCCCEEecCCCCCCCcCchhh---hcCCCCCeEeccCCCCCC----cchhhhhCCCCCcE
Q 047461 180 WLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSL---YRLKSLGVLSLCGCSNLQ----RLPECLGQLSSPIT 251 (312)
Q Consensus 180 ~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~ 251 (312)
.|++++|.++.+|..+ ..+++|++|++++|.+.+..+..+ ...+.++.++++++.+.+ .+|..+..+++|+.
T Consensus 202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~ 281 (353)
T 2z80_A 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE 281 (353)
T ss_dssp EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence 9999999999888654 468899999999998876543322 235678889998887765 47888999999999
Q ss_pred EeccCCCCcccchHh-hccCCCcEEEecCCcCCccc
Q 047461 252 FNLAKTNIERIPESI-IQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 252 L~l~~n~l~~~~~~l-~~~~~L~~L~l~~n~~~~~~ 286 (312)
|++++|.++.+|..+ ..+++|++|++++|++.+..
T Consensus 282 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 999999999888774 89999999999999987644
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.1e-22 Score=182.00 Aligned_cols=233 Identities=18% Similarity=0.114 Sum_probs=133.9
Q ss_pred hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccC
Q 047461 24 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHY 102 (312)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 102 (312)
.+..+++|++|++++|.+.+. .+.. ++|++|++++|.+..++ ...+++|++|++++|.++.++ +..+
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~---------~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l 126 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTL---------DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQN 126 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred hhcccCCCCEEEccCCcCCeE---------ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCC
Confidence 466667777777776654221 1333 66777777777666654 336667777777777666653 5566
Q ss_pred CCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEE
Q 047461 103 SKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 182 (312)
Q Consensus 103 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~ 182 (312)
++|+.|...... +..+ .++.+++|++|++++|...+.++ +..+++|++|++++|. +..+|....++|+.|+
T Consensus 127 ~~L~~L~l~~N~--l~~l----~l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~ 197 (457)
T 3bz5_A 127 PLLTYLNCARNT--LTEI----DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLN 197 (457)
T ss_dssp TTCCEEECTTSC--CSCC----CCTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEE
T ss_pred CcCCEEECCCCc--ccee----ccccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCc-cceeccccCCCCCEEE
Confidence 666633322210 1222 24556677777777765555542 5566777777777743 4444422245677777
Q ss_pred cCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc--
Q 047461 183 LRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-- 260 (312)
Q Consensus 183 l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-- 260 (312)
+++|.++.++ ++.+++|++|++++|++.+ +| ++.+++|+.|++++|.+.+..+ ..+++|+.|+++.|.++
T Consensus 198 l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 198 CDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCC
T ss_pred CcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEE
Confidence 7777776653 5566677777777776655 44 5666777777777766555332 23344444333333322
Q ss_pred ---------ccchHhhccCCCcEEEecCCcCCcccc
Q 047461 261 ---------RIPESIIQLFVSGYLLLSYGIVEDTLR 287 (312)
Q Consensus 261 ---------~~~~~l~~~~~L~~L~l~~n~~~~~~~ 287 (312)
.+| ++.+++|+.|++++|...+..+
T Consensus 270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred ECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 222 2456777777777776655444
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1.3e-21 Score=185.64 Aligned_cols=224 Identities=17% Similarity=0.103 Sum_probs=169.3
Q ss_pred CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccc-hh-hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCc
Q 047461 58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKR-LW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLV 133 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~-~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 133 (312)
++|++|++++|.+..++. .+ .+++|+.|++++|.+.. ++ ..+..+++|+.+...... +....+. .+..+++|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~~~~L~ 457 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN--SFALVPSLQ 457 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTT--TTTTCTTCC
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChh--hhhcCcccc
Confidence 467777777777665543 23 67888888888888763 44 456778888844333221 1222233 677888999
Q ss_pred EEEcCCCCcC--ccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH---------HHHhcC
Q 047461 134 TLNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS---------SIERLL 199 (312)
Q Consensus 134 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~---------~~~~l~ 199 (312)
+|++++|.+. +..|..+..+++|++|++++|. +..++... .++|+.|++++|.++.++. .++.++
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 9999998754 5678888899999999999965 44455432 5789999999999987632 267889
Q ss_pred CCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hh-ccCCCcEEEe
Q 047461 200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-II-QLFVSGYLLL 277 (312)
Q Consensus 200 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~-~~~~L~~L~l 277 (312)
+|++|++++|++....+..++.+++|+.|++++|.+.+-.+..+..+++|+.|++++|.++.++.. +. .+++|+.+++
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l 616 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence 999999999987754445688999999999999988766666678999999999999999976654 55 7899999999
Q ss_pred cCCcCCcc
Q 047461 278 SYGIVEDT 285 (312)
Q Consensus 278 ~~n~~~~~ 285 (312)
++|++...
T Consensus 617 ~~N~~~c~ 624 (680)
T 1ziw_A 617 RFNPFDCT 624 (680)
T ss_dssp TTCCCCBC
T ss_pred cCCCcccC
Confidence 99988643
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=6.4e-22 Score=178.80 Aligned_cols=235 Identities=17% Similarity=0.169 Sum_probs=134.4
Q ss_pred hcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCC
Q 047461 25 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS 103 (312)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~ 103 (312)
++.+++|++|++++|.+.+. .+.. ++|++|++++|.+..++ ...+++|++|++++|.++.++ +..++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~---------~~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~ 148 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL---------DVTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNT 148 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC---------CCTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCT
T ss_pred cccCCCCCEEECcCCCCcee---------ecCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCC
Confidence 56667777777777654221 1333 66777777777666654 336667777777777666553 55566
Q ss_pred CchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEc
Q 047461 104 KLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 183 (312)
Q Consensus 104 ~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l 183 (312)
+|+.+....... ...+ .++.+++|++|++++|.+.+ +| +..+++|+.|++++|. +..++....++|+.|++
T Consensus 149 ~L~~L~l~~n~~-~~~~----~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~L 219 (457)
T 3bz5_A 149 QLTELDCHLNKK-ITKL----DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDC 219 (457)
T ss_dssp TCCEEECTTCSC-CCCC----CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEEC
T ss_pred cCCEEECCCCCc-cccc----ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCc-CCeeccccCCCCCEEEC
Confidence 666443332211 1111 24556677777777766333 44 5566777777777643 33333222456777777
Q ss_pred CCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCC-------CCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 184 RGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLK-------SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 184 ~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-------~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
++|.++++| ++.+++|++|++++|++.+..+..+.+++ +|+.+++++|...+.+| +..+++|+.|++++
T Consensus 220 s~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 220 SSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTH 295 (457)
T ss_dssp CSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTT
T ss_pred cCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCC
Confidence 777777665 55666777777777766554333333332 34555555555555555 34566777777777
Q ss_pred CCCc-ccch--------HhhccCCCcEEEecCCcCCc
Q 047461 257 TNIE-RIPE--------SIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 257 n~l~-~~~~--------~l~~~~~L~~L~l~~n~~~~ 284 (312)
|... .+|. .+..+++|++|++++|.+.+
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 6532 2221 14455667777777777666
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=3.7e-22 Score=169.53 Aligned_cols=199 Identities=22% Similarity=0.295 Sum_probs=100.9
Q ss_pred CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccch-hhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461 58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRL-WDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT 134 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 134 (312)
++|++|+++++.+..++.. + .+++|++|++++|.++.+ +..+..++ +|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------~L~~ 84 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---------------------------LLEQ 84 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---------------------------TCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc---------------------------CCCE
Confidence 5677777777776666542 2 666777777777766644 23344444 4555
Q ss_pred EEcCCCCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCC
Q 047461 135 LNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCK 210 (312)
Q Consensus 135 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~ 210 (312)
|++++|...+.+ +..+..+++|++|++++|......|... .++|++|++++|.++.++.. ++.+++|++|++++|+
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 555544322222 3334444455555555433222111111 23455555555555544432 4445555555555555
Q ss_pred CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461 211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~ 283 (312)
+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++.
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444333345555555555555555544445555555555555555555554442 3455555555555555543
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1e-22 Score=174.73 Aligned_cols=223 Identities=17% Similarity=0.185 Sum_probs=179.1
Q ss_pred CCCcEEEeeccccccccccccccCCC-CCC-CCccEEeeCCCCCCCCC---C-ccCcCCccEEeCCCCcccchhhhcccC
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQD-PGF-AEVKYLHWHGYPLKSLP---S-NLSAEKLMLLEVPDSDIKRLWDCVKHY 102 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~---~-~~~l~~L~~L~l~~~~~~~~~~~~~~l 102 (312)
++|++|+++++.+. ..+.. +.. ++|++|++++|.+..+. . ...+++|++|++++|.+..++..+..+
T Consensus 28 ~~l~~L~L~~n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 68999999998751 23333 445 89999999999887652 2 227899999999999999888888899
Q ss_pred CCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC-CCCccc--cCCCC
Q 047461 103 SKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK-RLPEIS--SGNIS 179 (312)
Q Consensus 103 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~-~~p~~~--~~~L~ 179 (312)
++|+.|...... +..++....+..+++|++|++++|.+.+..+..+..+++|++|++++|...+ ..|... .++|+
T Consensus 101 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 999954443311 3333321267889999999999999777777778889999999999975433 233322 47899
Q ss_pred eEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC-CCcEEeccCC
Q 047461 180 WLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS-SPITFNLAKT 257 (312)
Q Consensus 180 ~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~l~~n 257 (312)
.|++++|.++++ |..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 999999999987 56788899999999999998887777788999999999999999988888888884 9999999999
Q ss_pred CCc
Q 047461 258 NIE 260 (312)
Q Consensus 258 ~l~ 260 (312)
+++
T Consensus 259 ~~~ 261 (306)
T 2z66_A 259 DFA 261 (306)
T ss_dssp CEE
T ss_pred Cee
Confidence 987
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3e-22 Score=194.11 Aligned_cols=269 Identities=16% Similarity=0.100 Sum_probs=189.9
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCC-CCC---cc
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKS-LPS---NL 77 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~-~~~---~~ 77 (312)
.+++.+++..+.. .....+..|.++++|++|++++|.+ ....+..+.. ++|++|++++|.+.. ++. ..
T Consensus 48 ~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 48 EQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKI------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp CSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCC------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred ccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcC------cccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 3455555554422 2233357788899999999988774 2223455555 788888888887664 222 22
Q ss_pred CcCCccEEeCCCCcccchh--hhcccCCCchh--cchhhcccc-----------------------cccCCCCCCcCCCc
Q 047461 78 SAEKLMLLEVPDSDIKRLW--DCVKHYSKLNQ--IIHAACHKL-----------------------IAKIPNPTLMPRLN 130 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~--l~~~~~~~~-----------------------~~~~~~~~~~~~l~ 130 (312)
.+++|++|++++|.+..++ ..+..+++|+. ++.+..... ....+. .++.++
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~--~~~~~~ 198 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV--DWGKCM 198 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC--CCCSSS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc--chhhcC
Confidence 7778888888888777543 35677777773 333322110 011122 334444
Q ss_pred C------CcEEEcCCCCcCcccccccc------------------------------------C--CCcCcEEeccCCCC
Q 047461 131 K------LVTLNLRGSKSLKSLPSGIF------------------------------------N--LEFLTKLDLSGCSK 166 (312)
Q Consensus 131 ~------L~~L~l~~~~~~~~~~~~l~------------------------------------~--~~~L~~L~l~~~~~ 166 (312)
+ |++|++++|.+.+..+..+. + .++|+.|++++|..
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 3 99999999865544333221 1 26799999999654
Q ss_pred CCCCCccc--cCCCCeEEcCCcccccch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh
Q 047461 167 LKRLPEIS--SGNISWLFLRGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL 243 (312)
Q Consensus 167 l~~~p~~~--~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~ 243 (312)
....+... .++|+.|++++|.++.++ ..++.+++|++|++++|.+.+..+..++.+++|+.|++++|.+....+..+
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 358 (844)
T 3j0a_A 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358 (844)
T ss_dssp CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh
Confidence 43333322 578999999999999764 568889999999999999888888889999999999999998877777778
Q ss_pred hCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 244 GQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 244 ~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
..+++|+.|++++|.++.++. +++|+.|++++|++..
T Consensus 359 ~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 359 KFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVT 395 (844)
T ss_dssp CSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCC
T ss_pred cCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccc
Confidence 899999999999999997654 7899999999998864
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=7.1e-22 Score=177.99 Aligned_cols=244 Identities=18% Similarity=0.204 Sum_probs=194.6
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcE
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVT 134 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~ 134 (312)
...+.++..+..++.+|..+ .++++.|++++|.+..++ ..+..+++|+. |+.+.. ..++ +..+..+++|++
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~-~~~~~~l~~L~~ 116 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI----RTIE-IGAFNGLANLNT 116 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC----CEEC-GGGGTTCSSCCE
T ss_pred CCCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC----CccC-hhhccCCccCCE
Confidence 34567777777788888754 368999999999999776 67889999994 454442 2222 126888999999
Q ss_pred EEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCC-cccccchH-HHHhcCCCCEEecCCC
Q 047461 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRG-IAIEELPS-SIERLLRLGYLDLSDC 209 (312)
Q Consensus 135 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~n 209 (312)
|++++|.+....+..+..+++|++|++++|. +..++... .++|+.|++++ +.+..++. .+..+++|++|++++|
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 9999998554444568889999999999965 44444322 57899999998 46666665 5788999999999999
Q ss_pred CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCccccc
Q 047461 210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRI 288 (312)
Q Consensus 210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~ 288 (312)
.+. .+|. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+ +..+..+++|+.|+|++|++.+ .+.
T Consensus 196 ~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 272 (440)
T 3zyj_A 196 NLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPH 272 (440)
T ss_dssp CCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-CCT
T ss_pred cCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-cCh
Confidence 865 4554 78899999999999998888889999999999999999999954 4678899999999999999875 444
Q ss_pred cccCCCCchhHHHhhhcceeeec
Q 047461 289 QHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
..+..++.++.++...++|.|.|
T Consensus 273 ~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 273 DLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTTSSCTTCCEEECCSSCEECSS
T ss_pred hHhccccCCCEEEcCCCCccCCC
Confidence 55667888888888888888887
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=7.8e-22 Score=178.34 Aligned_cols=243 Identities=18% Similarity=0.186 Sum_probs=193.9
Q ss_pred CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEE
Q 047461 59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTL 135 (312)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L 135 (312)
..+.++.++..+..+|... .+++++|++++|.+..++ ..+..+++|+. ++.+... ...+. .+..+++|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~--~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---QIEVG--AFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTT--TTTTCTTCCEE
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC---CcChh--hccCcccCCEE
Confidence 4566777777788888654 368999999999999764 67889999994 4444422 22333 78889999999
Q ss_pred EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCC-cccccchH-HHHhcCCCCEEecCCCC
Q 047461 136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRG-IAIEELPS-SIERLLRLGYLDLSDCK 210 (312)
Q Consensus 136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~n~ 210 (312)
++++|.+....+..+..+++|++|++++|. +..++... .++|+.|++++ +.++.++. .+..+++|++|++++|.
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 999999555445567889999999999965 44444322 57899999998 57777765 47789999999999998
Q ss_pred CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCcccccc
Q 047461 211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQ 289 (312)
Q Consensus 211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~ 289 (312)
+.+ +| .+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.+ +..+..+++|+.|+|++|.+.+ .+..
T Consensus 208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~ 284 (452)
T 3zyi_A 208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHD 284 (452)
T ss_dssp CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-cChH
Confidence 765 44 378899999999999999888899999999999999999999954 5678899999999999999875 4445
Q ss_pred ccCCCCchhHHHhhhcceeeec
Q 047461 290 HTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+..++.++.++...++|.|.|
T Consensus 285 ~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SSTTCTTCCEEECCSSCEECST
T ss_pred HhccccCCCEEEccCCCcCCCC
Confidence 5567788888888888888887
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=6.5e-22 Score=185.79 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=102.6
Q ss_pred CCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEe
Q 047461 176 GNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFN 253 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 253 (312)
.+++.++++.|.+... +..+..+++++.|++++|.... ..|..+..+++|++|++++|.+.+..|..|.++++|+.|+
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 5677788888777754 3445677888888888886443 4566778888899999998888777788888889999999
Q ss_pred ccCCCCcccc-hHhhccCCCcEEEecCCcCCccccccccCCC-CchhHHHhhhcceeeec
Q 047461 254 LAKTNIERIP-ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHT-PAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 254 l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 311 (312)
+++|+|+.++ ..+..+++|++|++++|++.+..+ ..+..+ +.++.++...++|.|.|
T Consensus 525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS-SCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH-HHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999888654 567888899999999998876433 334445 45777777788888877
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.5e-21 Score=165.82 Aligned_cols=200 Identities=21% Similarity=0.197 Sum_probs=156.2
Q ss_pred CCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCc-ccchhhhcccCC
Q 047461 28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSD-IKRLWDCVKHYS 103 (312)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~-~~~~~~~~~~l~ 103 (312)
.++|++|+++++.+. ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|. +..++
T Consensus 31 ~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~------- 97 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD------- 97 (285)
T ss_dssp CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-------
T ss_pred CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-------
Confidence 468999999998752 122234555 899999999999887743 33 78999999999986 55432
Q ss_pred CchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--c-cCCCCe
Q 047461 104 KLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--S-SGNISW 180 (312)
Q Consensus 104 ~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~-~~~L~~ 180 (312)
+. .++.+++|++|++++|.+.+..+..+..+++|++|++++|. +..++.. . .++|+.
T Consensus 98 -----------------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 98 -----------------PA--TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTH 157 (285)
T ss_dssp -----------------TT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred -----------------HH--HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccE
Confidence 11 45566788888888887665556667778888888888854 3344432 1 468888
Q ss_pred EEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461 181 LFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI 259 (312)
Q Consensus 181 L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l 259 (312)
|++++|.++.++. .+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 8888888888775 477889999999999998888888899999999999999988877777889999999999999998
Q ss_pred c
Q 047461 260 E 260 (312)
Q Consensus 260 ~ 260 (312)
+
T Consensus 238 ~ 238 (285)
T 1ozn_A 238 V 238 (285)
T ss_dssp E
T ss_pred c
Confidence 7
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=177.36 Aligned_cols=269 Identities=15% Similarity=0.101 Sum_probs=193.0
Q ss_pred CCCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchh-hhcccCCC
Q 047461 28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLW-DCVKHYSK 104 (312)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~ 104 (312)
++.....+.+++.+ ..+|..+. ++|++|++++|.+..++. .+ .+++|++|++++|.++.++ ..+..+++
T Consensus 30 C~~~~~c~~~~~~l-------~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 30 CDRNGICKGSSGSL-------NSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ECTTSEEECCSTTC-------SSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCeEeeCCCCCc-------cccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 44445556655432 23333322 689999999999888876 33 8899999999999998764 56888899
Q ss_pred chh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccc--cccCCCcCcEEeccCCCCCCCCCccc---cCC
Q 047461 105 LNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPS--GIFNLEFLTKLDLSGCSKLKRLPEIS---SGN 177 (312)
Q Consensus 105 L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~ 177 (312)
|+. ++.+. +..++. ..++.+++|++|++++|.+. .+|. .+..+++|++|++++|..+..++... .++
T Consensus 102 L~~L~Ls~n~----l~~~~~-~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 102 LEHLDLSYNY----LSNLSS-SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp CCEEECCSSC----CSSCCH-HHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CCEEECCCCc----CCcCCH-hHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 984 44444 333443 13678889999999999844 5554 67789999999999976555544322 467
Q ss_pred CCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh---hCCCCCcEEe
Q 047461 178 ISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL---GQLSSPITFN 253 (312)
Q Consensus 178 L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~---~~l~~L~~L~ 253 (312)
|+.|++++|.++.+ |..++.+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+ .....++.++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 88999999988876 6678888899999999988644333334568899999999988766443322 2456788888
Q ss_pred ccCCCCc-----ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 254 LAKTNIE-----RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 254 l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
++++.++ .+|..+..+++|++|++++|++.. .+...+..++.++.++...+.|.+.|
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 8888876 467788999999999999999974 44444556777777766666666655
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=1.2e-20 Score=175.75 Aligned_cols=220 Identities=22% Similarity=0.230 Sum_probs=146.7
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI 108 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l 108 (312)
++|++|++++|.+. .++. ..++|++|++++|.+..+|. .+++|++|++++|.++.++. .+++|+.|
T Consensus 61 ~~L~~L~L~~N~l~-------~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT-------SLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS-------CCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCC-------CCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 67778888776641 1222 12667777777777776665 56677777777777666554 34445422
Q ss_pred --chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccc-----------------cCCCcCcEEeccCCCCCCC
Q 047461 109 --IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGI-----------------FNLEFLTKLDLSGCSKLKR 169 (312)
Q Consensus 109 --~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----------------~~~~~L~~L~l~~~~~l~~ 169 (312)
+.+. +..++. . +++|++|++++|.+. .+|..+ ..+++|+.|++++|. +..
T Consensus 127 ~L~~N~----l~~lp~--~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~ 195 (622)
T 3g06_A 127 WIFGNQ----LTSLPV--L---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LAS 195 (622)
T ss_dssp ECCSSC----CSCCCC--C---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSC
T ss_pred ECCCCC----CCcCCC--C---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCC
Confidence 2222 222222 1 245555555555422 222211 134677777777743 444
Q ss_pred CCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCC
Q 047461 170 LPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSP 249 (312)
Q Consensus 170 ~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 249 (312)
+|... ++|+.|++.+|.++.+|.. +++|+.|++++|.+.+ +| ..+++|+.|++++|.+. .+|. .+++|
T Consensus 196 l~~~~-~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L 263 (622)
T 3g06_A 196 LPTLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGL 263 (622)
T ss_dssp CCCCC-TTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTC
T ss_pred CCCcc-chhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccC
Confidence 55443 6788888888887777642 4789999999987665 55 45688999999998765 5665 67889
Q ss_pred cEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461 250 ITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 250 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
+.|++++|.++.+|..+..+++|+.|++++|++.+.
T Consensus 264 ~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred cEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 999999999999999999999999999999998753
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.4e-22 Score=181.38 Aligned_cols=167 Identities=10% Similarity=-0.078 Sum_probs=104.9
Q ss_pred cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc-chHHHH-hcCCCCEEe
Q 047461 130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE-LPSSIE-RLLRLGYLD 205 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~-l~~~~~-~l~~L~~L~ 205 (312)
++|++|++++|.+.+..+. .+++|+.|++++|...+..|... .++|+.|++++|.++. .|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4677777777764443332 45667777777754333222221 4567777777777775 334443 577788888
Q ss_pred cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461 206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
+++|.+.+. +. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++...
T Consensus 176 Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 887776554 22 3357778888887776654 44447777788888888888877777777777888888888877632
Q ss_pred ccccccCCCCchhHHHh
Q 047461 286 LRIQHTNHTPAVRWQEI 302 (312)
Q Consensus 286 ~~~~~~~~~~~~~~~~~ 302 (312)
.....+..++.++.+..
T Consensus 253 ~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHhCCCCcEEec
Confidence 33333445555554443
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.5e-23 Score=179.46 Aligned_cols=234 Identities=12% Similarity=0.001 Sum_probs=118.0
Q ss_pred hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccC
Q 047461 24 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHY 102 (312)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l 102 (312)
.+..+++|++|++++|.+.+. .+..+.. ++|++|++++|.+..++....+++|++|++++|.++.++ ..
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~ 98 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VG 98 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----EC
T ss_pred HhccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CC
Confidence 344556777777777654211 1122333 667777777777665554446677777777777666543 22
Q ss_pred CCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCC
Q 047461 103 SKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGN 177 (312)
Q Consensus 103 ~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~ 177 (312)
++|+. ++.+.. ..++ ...+++|++|++++|.+.+..+..+..+++|++|++++|......+... .++
T Consensus 99 ~~L~~L~l~~n~l----~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 99 PSIETLHAANNNI----SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp TTCCEEECCSSCC----SEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred CCcCEEECCCCcc----CCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 44442 222221 1111 1123456666666665444334445555566666666543222111111 245
Q ss_pred CCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461 178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT 257 (312)
Q Consensus 178 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n 257 (312)
|++|++++|.++.++... .+++|++|++++|++.+. +..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 171 L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 171 LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp CCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred CCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence 555555555555543221 245555555555554432 223555555555555555443 34545555555555555555
Q ss_pred CCc--ccchHhhccCCCcEEEec
Q 047461 258 NIE--RIPESIIQLFVSGYLLLS 278 (312)
Q Consensus 258 ~l~--~~~~~l~~~~~L~~L~l~ 278 (312)
+++ .+|..+..+++|+.++++
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CccCcCHHHHHhccccceEEECC
Confidence 555 444455555555555555
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.8e-20 Score=159.43 Aligned_cols=132 Identities=26% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccch-HHHHhcCCCCEEec
Q 047461 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELP-SSIERLLRLGYLDL 206 (312)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l 206 (312)
.+++|++|++++|. ...+|..+..+++|++|++++ |+++.++ ..++.+++|++|++
T Consensus 75 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~----------------------N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSF----------------------NRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp CCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCS----------------------SCCCCCCSSTTTTCTTCCEEEC
T ss_pred CCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCC----------------------CcCcccCHHHHcCCCCCCEEEC
Confidence 34556666666665 334555555555566666655 3333333 22344445555555
Q ss_pred CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461 207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
++|++.+..+..+..+++|+.|++++|.+.+-.+..+..+++|+.|++++|.++.+|..+...++|+.+++++|++
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 5554444333334444555555555544433223333444555555555555555554444444555555555544
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=5.4e-20 Score=166.08 Aligned_cols=203 Identities=22% Similarity=0.288 Sum_probs=101.0
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL 137 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 137 (312)
++|++|++++|.+..+|.. ..+|++|++++|.+..+| .+..+++|+.+...... +..++. . .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~--l~~l~~--~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS--LKKLPD--L---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CSSCCC--C---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc--CCcCCC--C---cCcccEEEC
Confidence 5566666666555554432 235566666666555554 34555555532222110 111221 1 124555555
Q ss_pred CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCC--cC
Q 047461 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLK--SL 215 (312)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~--~~ 215 (312)
++|.+. .+|. +..+++|++|++++|. +..+|... .+|+.|++++|.++++|.. +++|++|++++|++.+ .+
T Consensus 223 ~~n~l~-~lp~-~~~l~~L~~L~l~~N~-l~~l~~~~-~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 223 GNNILE-ELPE-LQNLPFLTTIYADNNL-LKTLPDLP-PSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp CSSCCS-SCCC-CTTCTTCCEEECCSSC-CSSCCSCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC
T ss_pred cCCcCC-cccc-cCCCCCCCEEECCCCc-CCcccccc-cccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc
Confidence 555432 4443 5555666666666532 23333322 4455555555555444332 2344444444444333 11
Q ss_pred chh-------------hhcC-CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461 216 PSS-------------LYRL-KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI 281 (312)
Q Consensus 216 ~~~-------------l~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~ 281 (312)
|.. +..+ ++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|. .+++|++|++++|+
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC
Confidence 111 1112 356677776665543 4432 4667777777777776666 35677777777777
Q ss_pred CCc
Q 047461 282 VED 284 (312)
Q Consensus 282 ~~~ 284 (312)
+.+
T Consensus 369 l~~ 371 (454)
T 1jl5_A 369 LRE 371 (454)
T ss_dssp CSS
T ss_pred CCc
Confidence 765
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=2.1e-20 Score=157.87 Aligned_cols=199 Identities=21% Similarity=0.161 Sum_probs=140.6
Q ss_pred CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461 58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL 135 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 135 (312)
++|++|++++|.+..++. .+ .+++|++|++++|.+..++. . .++.+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~--~~~~l~~L~~L 81 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED------------------------G--AYQSLSHLSTL 81 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT------------------------T--TTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH------------------------H--HccCCcCCCEE
Confidence 456777777776666554 22 56677777777766554321 1 45566778888
Q ss_pred EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc---ccCCCCeEEcCCccccc--chHHHHhcCCCCEEecCCCC
Q 047461 136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLFLRGIAIEE--LPSSIERLLRLGYLDLSDCK 210 (312)
Q Consensus 136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~ 210 (312)
++++|.+.+..+..+.++++|++|++++|.. ..++.. ..++|+.|++++|.++. +|..++.+++|++|++++|+
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 8888775555556677778888888887543 333321 14678888888888876 67788888999999999998
Q ss_pred CCCcCchhhhcCCCCC----eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEecCCcCCc
Q 047461 211 RLKSLPSSLYRLKSLG----VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 211 ~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~ 284 (312)
+.+..+..+..+++|+ .+++++|.+.+..+. .....+|+.|++++|.++.+|.. +..+++|++|++++|++..
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 8776666666666666 888988876544343 33445899999999999877654 5788999999999998864
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.7e-21 Score=167.99 Aligned_cols=227 Identities=14% Similarity=0.069 Sum_probs=177.2
Q ss_pred CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchhhhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCc
Q 047461 58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLV 133 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~ 133 (312)
++|++|++++|.+..++. .+ .+++|++|++++|.+...+. +..+++|+. ++.+.. .. +...++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l----~~------l~~~~~L~ 102 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QE------LLVGPSIE 102 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE----EE------EEECTTCC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc----cc------ccCCCCcC
Confidence 689999999999988774 23 89999999999999986654 788899994 554442 22 22347999
Q ss_pred EEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccch-HHH-HhcCCCCEEecCC
Q 047461 134 TLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELP-SSI-ERLLRLGYLDLSD 208 (312)
Q Consensus 134 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~-~~~-~~l~~L~~L~l~~ 208 (312)
+|++++|.+.+..+. .+++|++|++++|. +..++... .++|+.|++++|.++.++ ..+ +.+++|++|++++
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 999999996554443 47889999999965 44443322 578999999999999764 334 4789999999999
Q ss_pred CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461 209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI 288 (312)
Q Consensus 209 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 288 (312)
|.+.+. +. ...+++|++|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++......
T Consensus 179 N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 179 NFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp SCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred CcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 987655 33 3358899999999987764 55568899999999999999999999899999999999999999843444
Q ss_pred cccCCCCchhHHHh
Q 047461 289 QHTNHTPAVRWQEI 302 (312)
Q Consensus 289 ~~~~~~~~~~~~~~ 302 (312)
..+..++.++.++.
T Consensus 256 ~~~~~~~~L~~l~l 269 (317)
T 3o53_A 256 DFFSKNQRVQTVAK 269 (317)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHhccccceEEEC
Confidence 44556677766554
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.6e-20 Score=154.86 Aligned_cols=198 Identities=20% Similarity=0.222 Sum_probs=89.6
Q ss_pred CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhh-hcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461 59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL 137 (312)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 137 (312)
+.++++++++.++.+|..+ .+++++|++++|.+..++. .+..+++|+.|...... +..++. ..+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~i~~-~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQTLPA-GIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CSCCCT-TTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cCeeCh-hhhcCCCCCCEEEC
Confidence 3455555555555555432 2455666666655554331 12222222211110000 111111 02344555555666
Q ss_pred CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCc
Q 047461 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLP 216 (312)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~ 216 (312)
++|.+....+..+..+++|++|++++ |.++.++. .++.+++|++|++++|.+.+..+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDR----------------------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcCCcCCHhHcccccCCCEEECCC----------------------CccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 55553332223334455555555555 44443332 23444555555555555444333
Q ss_pred hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcC
Q 047461 217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~ 282 (312)
..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 334455555555555554444333444455555555555555554443 244455555555555544
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=3.9e-21 Score=173.56 Aligned_cols=242 Identities=19% Similarity=0.165 Sum_probs=130.9
Q ss_pred ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CC-------------ccEEeeCCCC
Q 047461 4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AE-------------VKYLHWHGYP 69 (312)
Q Consensus 4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~-------------L~~L~l~~~~ 69 (312)
.++.+.+..+.. +..+..++++++|++|++++|.+. ...+..+.. .+ +++|+++++.
T Consensus 12 ~L~~L~l~~n~l---~~iP~~i~~L~~L~~L~l~~n~~~------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 12 FLQEPLRHSSNL---TEMPVEAENVKSKTEYYNAWSEWE------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHH------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cchhhhcccCch---hhCChhHhcccchhhhhccCCccc------ccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 345555554443 344677999999999999997752 234444444 33 4888888888
Q ss_pred CCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc
Q 047461 70 LKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP 147 (312)
Q Consensus 70 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 147 (312)
+..+|.. .++|++|++++|.++.+|.. .++|+. ++.+. +..++. + .++|++|++++|.+. .+|
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~----l~~l~~---~--~~~L~~L~L~~n~l~-~lp 147 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN----LKALSD---L--PPLLEYLGVSNNQLE-KLP 147 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC----CSCCCS---C--CTTCCEEECCSSCCS-SCC
T ss_pred cccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc----cCcccC---C--CCCCCEEECcCCCCC-CCc
Confidence 7777763 46788888888888776643 355653 33332 222221 1 146777777777744 366
Q ss_pred ccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCe
Q 047461 148 SGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGV 227 (312)
Q Consensus 148 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 227 (312)
++..+++|++|++++|. +..+|... .+|++|++++|.++.+| .++.+++|++|++++|++.+ +|.. .++|++
T Consensus 148 -~~~~l~~L~~L~l~~N~-l~~lp~~~-~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNS-LKKLPDLP-PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp -CCTTCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred -ccCCCCCCCEEECCCCc-CcccCCCc-ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence 36777777777777753 44455443 57777777777777766 45666777777777666544 2221 135566
Q ss_pred EeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461 228 LSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 228 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
|++++|.+. .+|. +..+++|+.|++++|.++.+|.. .++|++|++++|.+
T Consensus 220 L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l 269 (454)
T 1jl5_A 220 IVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL 269 (454)
T ss_dssp EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC
T ss_pred EECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcc
Confidence 666655443 4442 45555556666655555544432 23444444444443
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.3e-20 Score=157.94 Aligned_cols=190 Identities=18% Similarity=0.236 Sum_probs=86.9
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL 137 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 137 (312)
++|++|+++++.+..++....+++|++|++++|.+..++. +..+++|+.|...... +..++ .++.+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--l~~~~---~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LKNVS---AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CSCCG---GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--CCCch---hhcCCCCCCEEEC
Confidence 4556666666655555544455666666666665554432 2223333211111100 11111 2344445555555
Q ss_pred CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCch
Q 047461 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS 217 (312)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~ 217 (312)
++|.+ ..++. +..+++|++|++++ |.++.++. ++.+++|++|++++|.+.+ ++.
T Consensus 115 ~~n~l-~~~~~-l~~l~~L~~L~l~~----------------------n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~ 168 (308)
T 1h6u_A 115 TSTQI-TDVTP-LAGLSNLQVLYLDL----------------------NQITNISP-LAGLTNLQYLSIGNAQVSD-LTP 168 (308)
T ss_dssp TTSCC-CCCGG-GTTCTTCCEEECCS----------------------SCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG
T ss_pred CCCCC-CCchh-hcCCCCCCEEECCC----------------------CccCcCcc-ccCCCCccEEEccCCcCCC-Chh
Confidence 55552 22332 44555555555555 44444433 4444555555555554333 222
Q ss_pred hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461 218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 218 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~ 283 (312)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+++ +..+++|+.|++++|++.
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 4445555555555544433222 4445555555555555554432 444555555555555543
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.3e-20 Score=159.14 Aligned_cols=218 Identities=15% Similarity=0.104 Sum_probs=167.8
Q ss_pred CCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcc
Q 047461 66 HGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKS 145 (312)
Q Consensus 66 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 145 (312)
.+..+..+|..+ .+++++|++++|.++.++.. .++.+++|++|++++|.+.+.
T Consensus 15 ~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~--------------------------~~~~l~~L~~L~l~~n~l~~~ 67 (276)
T 2z62_A 15 MELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSY--------------------------SFFSFPELQVLDLSRCEIQTI 67 (276)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTCCCCEECTT--------------------------TTTTCTTCSEEECTTCCCCEE
T ss_pred cCCCccccCCCC-CCCccEEECCCCcccccCHh--------------------------HhccccCCcEEECCCCcCCcc
Confidence 344455566533 25788999998887754311 466778999999999986655
Q ss_pred ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCC-cCchhhhc
Q 047461 146 LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLK-SLPSSLYR 221 (312)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~-~~~~~l~~ 221 (312)
.+..+..+++|++|++++|......+... .++|+.|++.+|.++.++. .++.+++|++|++++|.+.+ .+|..++.
T Consensus 68 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (276)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence 55578889999999999965433222221 5799999999999998765 57889999999999999876 46888999
Q ss_pred CCCCCeEeccCCCCCCcchhhhhCCCCCc----EEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCch
Q 047461 222 LKSLGVLSLCGCSNLQRLPECLGQLSSPI----TFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAV 297 (312)
Q Consensus 222 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 297 (312)
+++|++|++++|.+.+..+..+..+++|+ .|++++|.++.++.......+|++|++++|.+.+. +...+..++.+
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L 226 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLTSL 226 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-CTTTTTTCCSC
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec-CHhHhcccccc
Confidence 99999999999988776666676666666 89999999998877666677999999999998763 34445567777
Q ss_pred hHHHhhhcceeeec
Q 047461 298 RWQEIWQEVWLNVC 311 (312)
Q Consensus 298 ~~~~~~~~~~~~~~ 311 (312)
+.++...+.|.+.|
T Consensus 227 ~~L~l~~N~~~c~c 240 (276)
T 2z62_A 227 QKIWLHTNPWDCSC 240 (276)
T ss_dssp CEEECCSSCBCCCT
T ss_pred cEEEccCCcccccC
Confidence 77777777776666
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.1e-22 Score=173.25 Aligned_cols=196 Identities=20% Similarity=0.145 Sum_probs=124.0
Q ss_pred cCCccEEeCCCCccc-chhhhc--ccCCCchh--cchhhcccccccCCCCCCcCCC-----cCCcEEEcCCCCcCccccc
Q 047461 79 AEKLMLLEVPDSDIK-RLWDCV--KHYSKLNQ--IIHAACHKLIAKIPNPTLMPRL-----NKLVTLNLRGSKSLKSLPS 148 (312)
Q Consensus 79 l~~L~~L~l~~~~~~-~~~~~~--~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~ 148 (312)
+++|++|++++|.++ .+|..+ ..+++|+. ++.+. +...+. .++.+ ++|++|++++|.+.+..+.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS----WATRDA--WLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB----CSSSSS--HHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC----CcchhH--HHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 556666666666665 344443 55666663 33333 222222 33333 6778888887775555556
Q ss_pred cccCCCcCcEEeccCCCCCCCC--C-c---cccCCCCeEEcCCcccccchH---H-HHhcCCCCEEecCCCCCCCcCc-h
Q 047461 149 GIFNLEFLTKLDLSGCSKLKRL--P-E---ISSGNISWLFLRGIAIEELPS---S-IERLLRLGYLDLSDCKRLKSLP-S 217 (312)
Q Consensus 149 ~l~~~~~L~~L~l~~~~~l~~~--p-~---~~~~~L~~L~l~~~~l~~l~~---~-~~~l~~L~~L~l~~n~~~~~~~-~ 217 (312)
.+..+++|++|++++|...+.. + . ...++|+.|++++|.++.++. . +..+++|++|++++|++.+..| .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 6777778888888776543321 1 1 113577788888887774432 2 3456778888888877766553 3
Q ss_pred hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 218 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
.+..+++|++|++++|.+. .+|..+. ++|+.|++++|+++.+|. +..+++|++|++++|++.+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 3455677888888877665 6666554 678888888888876666 7777888888888887764
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=9.2e-22 Score=179.24 Aligned_cols=230 Identities=13% Similarity=-0.004 Sum_probs=180.3
Q ss_pred CCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch
Q 047461 28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN 106 (312)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~ 106 (312)
+++|++|++++|.+.+ ..+..+.. ++|++|++++|.+...++...+++|++|++++|.++.++. .++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp GGGCCEEECCSSCCCC------CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred CCCccEEEeeCCcCCC------CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 3489999999987522 22234555 8999999999998766665588999999999999887653 36777
Q ss_pred h--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeE
Q 047461 107 Q--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWL 181 (312)
Q Consensus 107 ~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L 181 (312)
. ++.+.. ..++ ...+++|++|++++|.+.+..|..+..+++|++|++++|...+..|... .++|+.|
T Consensus 103 ~L~L~~N~l----~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 103 TLHAANNNI----SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp EEECCSSCC----CCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred EEECcCCcC----CCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 4 444432 2222 1346789999999999777777788889999999999976544333322 4789999
Q ss_pred EcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-
Q 047461 182 FLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE- 260 (312)
Q Consensus 182 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~- 260 (312)
++++|.++.++.. ..+++|++|++++|.+.+.. ..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 175 ~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 175 NLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp ECTTSCCCEEECC-CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCH
T ss_pred ecCCCcccccccc-ccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcC
Confidence 9999999988653 35889999999999987654 45889999999999998876 48888889999999999999998
Q ss_pred -ccchHhhccCCCcEEEec
Q 047461 261 -RIPESIIQLFVSGYLLLS 278 (312)
Q Consensus 261 -~~~~~l~~~~~L~~L~l~ 278 (312)
.+|..+..++.|+.+++.
T Consensus 252 ~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHhCCCCcEEecc
Confidence 777888888888888875
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=3e-20 Score=156.66 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=101.8
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL 137 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 137 (312)
.+|+.|+++++.+..++....+++|++|++++|.+..++ .++.+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~----------------------------~l~~l~~L~~L~L 92 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS----------------------------ALKELTNLTYLIL 92 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG----------------------------GGTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch----------------------------hhcCCCCCCEEEC
Confidence 556666666666555555445666666666666554321 2333445555555
Q ss_pred CCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--c-cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCCCC
Q 047461 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--S-SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKRLK 213 (312)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~~~ 213 (312)
++|.+.+..+..+..+++|++|++++|. +..++.. . .++|+.|++++|.++.++.. ++.+++|++|++++|++.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 5554333333334445555555555533 2222221 1 23455555555555544432 3455666666666666555
Q ss_pred cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccc
Q 047461 214 SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 214 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~ 286 (312)
..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +.+++++.+++..|.+.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGB
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcc
Confidence 44444556666666666666655555555566666666666666554 22445555555555555543
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=3.4e-20 Score=157.70 Aligned_cols=179 Identities=20% Similarity=0.149 Sum_probs=143.2
Q ss_pred cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCC
Q 047461 130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSD 208 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~ 208 (312)
+.++.|++++|.+.+..+..+..+++|++|++++|. +..++... .++|+.|++++|.++.+|..+..+++|++|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 378889999988666666778888999999999854 44343323 5789999999999999998888999999999999
Q ss_pred CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEecCCcCCcccc
Q 047461 209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLSYGIVEDTLR 287 (312)
Q Consensus 209 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~~~~ 287 (312)
|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++.+|.. +..+++|++|++++|++..-+.
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 998877777899999999999999988877777788999999999999999988764 5789999999999999874322
Q ss_pred ccccCCCCchhHHHhhhcceeeec
Q 047461 288 IQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
. +-..+.++.++...++|.|.|
T Consensus 190 -~-~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 190 -G-FFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp -T-TTTTCCCSEEECCSCCBCCSG
T ss_pred -h-hcccccCCeEEeCCCCccCcC
Confidence 1 223445555555666666655
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=1.5e-19 Score=168.31 Aligned_cols=232 Identities=21% Similarity=0.165 Sum_probs=161.8
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI 108 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l 108 (312)
.+++.|+++++.+ ..+|..+. ++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+++|+.|
T Consensus 40 ~~l~~L~ls~n~L-------~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGL-------TTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCC-------SCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCc-------CccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 4689999999765 23344333 789999999999999887 67899999999999998876 67888844
Q ss_pred --chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461 109 --IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI 186 (312)
Q Consensus 109 --~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~ 186 (312)
+.+. +..++. .+++|++|++++|. ...+|. .+++|++|++++|. +..+|... .+|+.|++.+|
T Consensus 107 ~Ls~N~----l~~l~~-----~l~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~l~~~~-~~L~~L~L~~N 171 (622)
T 3g06_A 107 SIFSNP----LTHLPA-----LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPALP-SELCKLWAYNN 171 (622)
T ss_dssp EECSCC----CCCCCC-----CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSS
T ss_pred ECcCCc----CCCCCC-----CCCCcCEEECCCCC-CCcCCC---CCCCCCEEECcCCc-CCCcCCcc-CCCCEEECCCC
Confidence 4443 333332 45689999999998 555676 35889999999964 44455433 56777777777
Q ss_pred ccccchHHHHhcCCCCEEecCCCCCCCcCchh---hh--------------cCCCCCeEeccCCCCCCcchhhhhCCCCC
Q 047461 187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSS---LY--------------RLKSLGVLSLCGCSNLQRLPECLGQLSSP 249 (312)
Q Consensus 187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~---l~--------------~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 249 (312)
.++.+| ..+++|+.|++++|.+.+ +|.. +. .+++|+.|++++|.+.+ +| ..+++|
T Consensus 172 ~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L 243 (622)
T 3g06_A 172 QLTSLP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSEL 243 (622)
T ss_dssp CCSCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred CCCCCc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcC
Confidence 777666 345566666666665543 2211 11 12567888888776544 55 456788
Q ss_pred cEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461 250 ITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE 301 (312)
Q Consensus 250 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 301 (312)
+.|++++|.++.+|. .+++|+.|++++|.+..- + ..+..++.++.++
T Consensus 244 ~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~l-p-~~l~~l~~L~~L~ 290 (622)
T 3g06_A 244 KELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRL-P-ESLIHLSSETTVN 290 (622)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSC-C-GGGGGSCTTCEEE
T ss_pred cEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcC-C-HHHhhccccCEEE
Confidence 999999998888777 578899999999988743 2 2244555555443
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=162.33 Aligned_cols=221 Identities=19% Similarity=0.068 Sum_probs=159.1
Q ss_pred CCccEEeeCCCCCCC-----CCCccCcCCccEEeCCCCcccc-hhhhc--ccCCCchhc--chhhcccccccCC-CCCCc
Q 047461 58 AEVKYLHWHGYPLKS-----LPSNLSAEKLMLLEVPDSDIKR-LWDCV--KHYSKLNQI--IHAACHKLIAKIP-NPTLM 126 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~-~~~~~--~~l~~L~~l--~~~~~~~~~~~~~-~~~~~ 126 (312)
..++.+.+.++.+.. +.....+++|++|++++|.+.. .+..+ ..+++|+.| +.+........++ . .+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~--~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL--QQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH--HT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH--Hh
Confidence 456666666655432 1111234567778887777763 34444 667777743 3333211000000 1 33
Q ss_pred CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCC--CC--c--cccCCCCeEEcCCcccccchHH----HH
Q 047461 127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LP--E--ISSGNISWLFLRGIAIEELPSS----IE 196 (312)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~p--~--~~~~~L~~L~l~~~~l~~l~~~----~~ 196 (312)
..+++|++|++++|.+.+..+..+..+++|++|++++|...+. ++ . ...++|++|++++|.++.++.. ++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 4688999999999997666667888999999999999764321 11 1 1246899999999999877653 56
Q ss_pred hcCCCCEEecCCCCCCCcCchhhhcC---CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCc
Q 047461 197 RLLRLGYLDLSDCKRLKSLPSSLYRL---KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSG 273 (312)
Q Consensus 197 ~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~ 273 (312)
.+++|++|++++|++.+..|..++.+ ++|++|++++|.+. .+|..+. ++|+.|++++|+++.+|. +..+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 78999999999999988877777766 69999999998876 6777654 899999999999998766 67889999
Q ss_pred EEEecCCcCCc
Q 047461 274 YLLLSYGIVED 284 (312)
Q Consensus 274 ~L~l~~n~~~~ 284 (312)
.|++++|++.+
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999875
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=8.3e-22 Score=169.57 Aligned_cols=238 Identities=16% Similarity=0.091 Sum_probs=175.8
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccc--hhhhcc-------cCCCchhcchhhcccccccCCCCCCc--
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKR--LWDCVK-------HYSKLNQIIHAACHKLIAKIPNPTLM-- 126 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~-------~l~~L~~l~~~~~~~~~~~~~~~~~~-- 126 (312)
.+|+++++++|.+ .+|.... ..++.|++++|.+.. ++.... .+++|+.|...... +....+. .+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPP--PLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCC--CSSS
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHH--HHHH
Confidence 5688888888888 6665331 238888999988863 444433 68889854443321 1234454 54
Q ss_pred CCCcCCcEEEcCCCCcCccccccccCC-----CcCcEEeccCCCCCCCCC-ccc--cCCCCeEEcCCccccc---chHHH
Q 047461 127 PRLNKLVTLNLRGSKSLKSLPSGIFNL-----EFLTKLDLSGCSKLKRLP-EIS--SGNISWLFLRGIAIEE---LPSSI 195 (312)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~l~~~p-~~~--~~~L~~L~l~~~~l~~---l~~~~ 195 (312)
+.+++|++|++++|.+.+. |..+..+ ++|++|++++|.. ..++ ... .++|+.|++++|.+.+ ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 7899999999999996655 7666666 8999999999654 4444 222 5789999999998764 34444
Q ss_pred --HhcCCCCEEecCCCCCCC--cCc-hhhhcCCCCCeEeccCCCCCCcch-hhhhCCCCCcEEeccCCCCcccchHhhcc
Q 047461 196 --ERLLRLGYLDLSDCKRLK--SLP-SSLYRLKSLGVLSLCGCSNLQRLP-ECLGQLSSPITFNLAKTNIERIPESIIQL 269 (312)
Q Consensus 196 --~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~l~~~ 269 (312)
+.+++|++|++++|++.+ .++ ..+..+++|++|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence 788999999999998763 223 334578999999999999887664 445568999999999999999988776
Q ss_pred CCCcEEEecCCcCCccccccccCCCCchhHHHhhhcce
Q 047461 270 FVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVW 307 (312)
Q Consensus 270 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (312)
++|++|++++|++.+.+. +..++.++.++...+.+
T Consensus 274 ~~L~~L~Ls~N~l~~~p~---~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNPS---PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEEEEECCSSCCCSCCC---TTTSCEEEEEECTTCTT
T ss_pred CCceEEECCCCCCCCChh---HhhCCCCCEEeccCCCC
Confidence 899999999999988633 45677777665544433
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.5e-21 Score=172.91 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=154.8
Q ss_pred cCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC----c--------cCcCCccE
Q 047461 18 LHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS----N--------LSAEKLML 84 (312)
Q Consensus 18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~--------~~l~~L~~ 84 (312)
+......+..+++|++|++++|.+.... ...+...+.. ++|++|++++|.+..+.. . ..+++|++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHH--HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 3344567778899999999998763321 1122233444 889999999876554321 1 25678888
Q ss_pred EeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc----ccccCC-------
Q 047461 85 LEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP----SGIFNL------- 153 (312)
Q Consensus 85 L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~------- 153 (312)
|++++|.+..... ..++. .+..+++|++|++++|.+....+ ..+..+
T Consensus 99 L~Ls~n~l~~~~~--------------------~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~ 156 (386)
T 2ca6_A 99 VRLSDNAFGPTAQ--------------------EPLID--FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK 156 (386)
T ss_dssp EECCSCCCCTTTH--------------------HHHHH--HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCcCCHHHH--------------------HHHHH--HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcc
Confidence 8888887764100 00111 33445567777777776432222 222222
Q ss_pred --CcCcEEeccCCCCC-CCCCcc-----ccCCCCeEEcCCccccc-----chH-HHHhcCCCCEEecCCCCCC----CcC
Q 047461 154 --EFLTKLDLSGCSKL-KRLPEI-----SSGNISWLFLRGIAIEE-----LPS-SIERLLRLGYLDLSDCKRL----KSL 215 (312)
Q Consensus 154 --~~L~~L~l~~~~~l-~~~p~~-----~~~~L~~L~l~~~~l~~-----l~~-~~~~l~~L~~L~l~~n~~~----~~~ 215 (312)
++|++|++++|... ..++.. ..++|+.|++++|.++. +.. .+..+++|++|++++|.+. ..+
T Consensus 157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 67777777775433 122311 13577777777777762 222 5667778888888888764 456
Q ss_pred chhhhcCCCCCeEeccCCCCCCc----chhhhhC--CCCCcEEeccCCCCcc-----cchHh-hccCCCcEEEecCCcCC
Q 047461 216 PSSLYRLKSLGVLSLCGCSNLQR----LPECLGQ--LSSPITFNLAKTNIER-----IPESI-IQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 216 ~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~--l~~L~~L~l~~n~l~~-----~~~~l-~~~~~L~~L~l~~n~~~ 283 (312)
+..+..+++|++|++++|.+.+. ++..+.. +++|+.|++++|.++. +|..+ ..+++|++|++++|++.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 66777788888888888776654 4566533 7888888888888875 66666 55788888888888876
Q ss_pred ccc
Q 047461 284 DTL 286 (312)
Q Consensus 284 ~~~ 286 (312)
+..
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 544
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.1e-18 Score=145.12 Aligned_cols=197 Identities=21% Similarity=0.221 Sum_probs=135.0
Q ss_pred CCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchhhh-cccCCCch
Q 047461 30 KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLWDC-VKHYSKLN 106 (312)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~ 106 (312)
+.+.++++++.+ ..+|..+. .++++|+++++.+..++.. + .+++|++|++++|.++.++.. +..+++|+
T Consensus 17 ~~~~l~~~~~~l-------~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 17 NKNSVDCSSKKL-------TAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TTTEEECTTSCC-------SSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCEEEccCCCC-------CccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 467788877553 22333222 6788899998888877752 3 788899999999888877754 46788888
Q ss_pred h--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcC
Q 047461 107 Q--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLR 184 (312)
Q Consensus 107 ~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~ 184 (312)
. ++.+. +..++. ..+..+++|++|++++|.+....+..+..+++|++|++++|. +..+|.
T Consensus 89 ~L~l~~n~----l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------ 150 (270)
T 2o6q_A 89 TLWVTDNK----LQALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK------------ 150 (270)
T ss_dssp EEECCSSC----CCCCCT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------
T ss_pred EEECCCCc----CCcCCH-hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCH------------
Confidence 4 44444 333332 256789999999999999665555566778888888887743 333332
Q ss_pred CcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 185 GIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 185 ~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 151 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 --------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp --------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred --------hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 12445667777777777766655556677777888888777666544555677778888888888765
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=7.6e-19 Score=150.72 Aligned_cols=184 Identities=22% Similarity=0.239 Sum_probs=143.3
Q ss_pred CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461 78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT 157 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 157 (312)
.+++|++|+++++.+..++ .+..+++|++|++++|. ...++. +..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~----------------------------~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~ 88 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE----------------------------GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKIT 88 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT----------------------------TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCC
T ss_pred HcCCcCEEEeeCCCccCch----------------------------hhhccCCCCEEEccCCc-CCCChh-HccCCCCC
Confidence 5667777777776655432 34556688889998887 444555 77888899
Q ss_pred EEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC
Q 047461 158 KLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL 236 (312)
Q Consensus 158 ~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 236 (312)
+|++++|. +..++... .++|+.|++++|.++.++. ++.+++|++|++++|.+.+. +. ++.+++|+.|++++|.+.
T Consensus 89 ~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 89 ELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp EEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred EEEccCCc-CCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence 99999855 55555444 5789999999999998875 78899999999999987654 33 789999999999998776
Q ss_pred CcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461 237 QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE 301 (312)
Q Consensus 237 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 301 (312)
+ ++. +..+++|+.|++++|.++.++. +..+++|++|++++|++.+..++. .++.++.++
T Consensus 165 ~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~---~l~~L~~L~ 223 (308)
T 1h6u_A 165 D-LTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVT 223 (308)
T ss_dssp C-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGT---TCTTCCEEE
T ss_pred C-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccccc---CCCCCCEEE
Confidence 5 443 8899999999999999997766 789999999999999998876654 455555443
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=2.3e-19 Score=151.22 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=132.7
Q ss_pred CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--c-cCCCCeEEcCCcccccchHH-HHhcCC
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--S-SGNISWLFLRGIAIEELPSS-IERLLR 200 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~-~~~L~~L~l~~~~l~~l~~~-~~~l~~ 200 (312)
.++.+++|++|++++|.+.+ ++ .+..+++|++|++++|. +..++.. . .++|++|++++|.++.++.. ++.+++
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 45667899999999998544 44 58899999999999965 4444432 2 57999999999999988764 688999
Q ss_pred CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecC
Q 047461 201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSY 279 (312)
Q Consensus 201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~ 279 (312)
|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 9999999999887777778899999999999999887777778899999999999999996654 578899999999999
Q ss_pred CcCCcc
Q 047461 280 GIVEDT 285 (312)
Q Consensus 280 n~~~~~ 285 (312)
|++.+.
T Consensus 215 N~~~~~ 220 (272)
T 3rfs_A 215 NPWDCT 220 (272)
T ss_dssp SCBCCC
T ss_pred CCcccc
Confidence 987653
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3.1e-20 Score=161.23 Aligned_cols=247 Identities=19% Similarity=0.195 Sum_probs=168.4
Q ss_pred CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCC-ccCcCCccEEeCCCCcccc--hhhhcccCCCc
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPS-NLSAEKLMLLEVPDSDIKR--LWDCVKHYSKL 105 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L 105 (312)
..++.++++++.+... ....+...+++.++++++.+...+. .+.+++|++|++++|.+.. ++..+..+++|
T Consensus 47 ~~~~~l~l~~~~~~~~------~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPD------VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCCHH------HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred hhheeeccccccCCHH------HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence 3478889887654211 0011101678999999988665543 4488999999999998873 66677888888
Q ss_pred hhcchhhcccccccCCCCCCcCCCcCCcEEEcCCC-CcCc-cccccccCCCcCcEEeccCCCCCCC--CCccc--cC-CC
Q 047461 106 NQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGS-KSLK-SLPSGIFNLEFLTKLDLSGCSKLKR--LPEIS--SG-NI 178 (312)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~--~p~~~--~~-~L 178 (312)
+.|....+. +....+. .++.+++|++|++++| .+.+ .++..+..+++|++|++++|..+.. ++... .+ +|
T Consensus 121 ~~L~L~~~~-l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 121 QNLSLEGLR-LSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp SEEECTTCB-CCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CEEeCcCcc-cCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 855544432 1222333 5677889999999998 4443 2566567788999999999734442 23222 46 89
Q ss_pred CeEEcCCcc--cc--cchHHHHhcCCCCEEecCCCC-CCCcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCCCCCcEE
Q 047461 179 SWLFLRGIA--IE--ELPSSIERLLRLGYLDLSDCK-RLKSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQLSSPITF 252 (312)
Q Consensus 179 ~~L~l~~~~--l~--~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L 252 (312)
+.|++++|. ++ .++..++.+++|++|++++|. +.+..+..++.+++|++|++++|. +.......+..+++|+.|
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 999999984 43 577778888999999999988 555666778888999999998884 333333467788999999
Q ss_pred eccCCCCcccchHhhcc-CCCcEEEecCCcCCcccc
Q 047461 253 NLAKTNIERIPESIIQL-FVSGYLLLSYGIVEDTLR 287 (312)
Q Consensus 253 ~l~~n~l~~~~~~l~~~-~~L~~L~l~~n~~~~~~~ 287 (312)
++++| ++. ..+..+ ..++.|++++|.+.+..+
T Consensus 278 ~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 278 QVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp ECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred eccCc-cCH--HHHHHHHhhCcceEEecccCccccC
Confidence 99988 541 112222 235666688888876544
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=3.8e-18 Score=142.04 Aligned_cols=174 Identities=24% Similarity=0.254 Sum_probs=113.9
Q ss_pred CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461 59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR 138 (312)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (312)
..++++++++.+..+|.... ++++.|++++|.+..++.. .++.+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~--------------------------~~~~l~~L~~L~L~ 67 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDA--------------------------TFRGLTKLTWLNLD 67 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTT--------------------------TTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHh--------------------------HhcCcccCCEEECC
Confidence 45667777777777775443 5677777777776543211 45556677777777
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCCCCc
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKRLKS 214 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~~~~ 214 (312)
+|.+.+..+..+..+++|++|++++|. +..++... .++|+.|++++|.++.++.. ++.+++|++|++++|++.+.
T Consensus 68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 68 YNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence 777555555556667777777777744 33333211 35666666666666666543 45677777777777776655
Q ss_pred CchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 215 LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 215 ~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
.+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5556777777777777777766655666777777777777777776
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=7.8e-21 Score=172.04 Aligned_cols=158 Identities=18% Similarity=0.087 Sum_probs=97.4
Q ss_pred cCCCcCCcEEEcCCCCcCccc-----cccccCCCcCcEEeccCCCCCCC-----CCccc--cCCCCeEEcCCcccccch-
Q 047461 126 MPRLNKLVTLNLRGSKSLKSL-----PSGIFNLEFLTKLDLSGCSKLKR-----LPEIS--SGNISWLFLRGIAIEELP- 192 (312)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~l~~-----~p~~~--~~~L~~L~l~~~~l~~l~- 192 (312)
+..+++|++|++++|.+.... +.....+++|++|++++|. +.. ++... .++|+.|++++|.++...
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 344566677777766533221 1112235667777777653 222 22211 356777777777665321
Q ss_pred HHHHh-----cCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCcchhhhhC-----CCCCcEEeccCCC
Q 047461 193 SSIER-----LLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQ-----LSSPITFNLAKTN 258 (312)
Q Consensus 193 ~~~~~-----l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~-----l~~L~~L~l~~n~ 258 (312)
..+.. .++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 11221 24777777777766543 4455666788888888887765554444432 5688888888888
Q ss_pred Cc-----ccchHhhccCCCcEEEecCCcCCc
Q 047461 259 IE-----RIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 259 l~-----~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
++ .+|..+..+++|++|++++|++.+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 87 567777788888888888888865
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=2.5e-21 Score=175.35 Aligned_cols=109 Identities=18% Similarity=0.081 Sum_probs=57.8
Q ss_pred CCCCeEEcCCcccccc-----hHH-HHhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCcchhhhhC
Q 047461 176 GNISWLFLRGIAIEEL-----PSS-IERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQ 245 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l-----~~~-~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~ 245 (312)
++|+.|++++|.++.. ... ...+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+..
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 4555555555555431 111 11345566666665554432 3444555566666666665544332222221
Q ss_pred -----CCCCcEEeccCCCCcc-----cchHhhccCCCcEEEecCCcCCc
Q 047461 246 -----LSSPITFNLAKTNIER-----IPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 246 -----l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
.++|+.|++++|.++. ++..+..+++|++|++++|.+.+
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 2466666666666652 34455666777777777776654
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.6e-19 Score=149.31 Aligned_cols=194 Identities=16% Similarity=0.187 Sum_probs=117.6
Q ss_pred CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCc-ccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461 58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSD-IKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT 134 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 134 (312)
.++++|++++|.++.++.. + .+++|++|++++|. ++.++.. .+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~--------------------------~f~~l~~L~~ 84 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH--------------------------SFYNLSKVTH 84 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT--------------------------TEESCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh--------------------------HcCCCcCCcE
Confidence 4566666666666665552 2 56666666666664 5544321 3444556666
Q ss_pred EEcCC-CCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCC---eEEcCCc-ccccchH-HHHhcCCCC-EEec
Q 047461 135 LNLRG-SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNIS---WLFLRGI-AIEELPS-SIERLLRLG-YLDL 206 (312)
Q Consensus 135 L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~---~L~l~~~-~l~~l~~-~~~~l~~L~-~L~l 206 (312)
|++++ |.+....+..+..+++|++|++++|. +..+|... ..+++ .|++++| .++.++. .++.+++|+ +|++
T Consensus 85 L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred EECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 66665 55332223344556666666666643 33344322 23444 6666666 6666654 356677788 8888
Q ss_pred CCCCCCCcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCC-CCCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461 207 SDCKRLKSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQL-SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI 281 (312)
Q Consensus 207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~ 281 (312)
++|.+. .+|......++|+.|++++|. +.+..+..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++.
T Consensus 164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 887765 444433344778888888874 554445567777 7888888888888877764 57788888887763
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=4.3e-18 Score=159.76 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=169.4
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccc---hhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKR---LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT 134 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 134 (312)
..|+.+.+..+.....+....++.|+.+++++|.+.. .+.....+.+|+.+...... ....+. .+..+++|+.
T Consensus 349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~--~~~~~~--~~~~l~~L~~ 424 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG--VITMSS--NFLGLEQLEH 424 (635)
T ss_dssp TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS--EEEECS--CCTTCTTCCE
T ss_pred hhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc--cccccc--cccccccccc
Confidence 5677778777776666655578899999999988763 23445566777744333211 223333 6777889999
Q ss_pred EEcCCCCcCcccc-ccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccc-c-chHHHHhcCCCCEEecCCC
Q 047461 135 LNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-E-LPSSIERLLRLGYLDLSDC 209 (312)
Q Consensus 135 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~-l~~~~~~l~~L~~L~l~~n 209 (312)
+++.++......+ ..+..+++++.++++.|......+... .+.++.|++++|.+. . .|..++.+++|++|++++|
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N 504 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence 9999887555443 345678999999999965444333332 468999999998654 3 5667888999999999999
Q ss_pred CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhcc-CCCcEEEecCCcCC
Q 047461 210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQL-FVSGYLLLSYGIVE 283 (312)
Q Consensus 210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~-~~L~~L~l~~n~~~ 283 (312)
++.+..|..++.+++|++|++++|++.+-.|..+..+++|+.|++++|+++.+ |..+..+ ++|++|++++|++.
T Consensus 505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99888888899999999999999998887788899999999999999999954 5667777 68999999999885
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=3.9e-19 Score=154.27 Aligned_cols=234 Identities=17% Similarity=0.155 Sum_probs=175.7
Q ss_pred CccEEeeCCCCCCCCCCcc-Cc--CCccEEeCCCCcccchhhhcccCCCchhcchhhccccccc-CCCCCCcCCCcCCcE
Q 047461 59 EVKYLHWHGYPLKSLPSNL-SA--EKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAK-IPNPTLMPRLNKLVT 134 (312)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~-~l--~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~~~~~~l~~L~~ 134 (312)
.++.++++++.+. +..+ .+ +.++.+++++|.+...+..+..+++|+.|....+. +... ++. .+..+++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~--~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHG--ILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHH--HHTTBCCCSE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHH--HHhhCCCCCE
Confidence 4788999887655 2222 44 78999999999988766666778899855444432 1111 443 5678899999
Q ss_pred EEcCCCCcCccccccccCCCcCcEEeccCCCCCCC--CCccc--cCCCCeEEcCCc-cccc--chHHHHhcC-CCCEEec
Q 047461 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LPEIS--SGNISWLFLRGI-AIEE--LPSSIERLL-RLGYLDL 206 (312)
Q Consensus 135 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~p~~~--~~~L~~L~l~~~-~l~~--l~~~~~~l~-~L~~L~l 206 (312)
|++++|.+.+..+..+..+++|++|++++|..+.. ++... .++|+.|++++| .++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 99999987777777788899999999999855542 34322 579999999999 9985 677888999 9999999
Q ss_pred CCCC--CC-CcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCCCCCcEEeccCCC-Cc-ccchHhhccCCCcEEEecCC
Q 047461 207 SDCK--RL-KSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQLSSPITFNLAKTN-IE-RIPESIIQLFVSGYLLLSYG 280 (312)
Q Consensus 207 ~~n~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~-l~-~~~~~l~~~~~L~~L~l~~n 280 (312)
++|. +. +.++..+..+++|++|++++|. +.+..+..+..+++|+.|++++|. ++ .....+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9984 44 4566778889999999999998 666778888999999999999995 44 22235788999999999999
Q ss_pred cCCcccccccc-CCCCchhH
Q 047461 281 IVEDTLRIQHT-NHTPAVRW 299 (312)
Q Consensus 281 ~~~~~~~~~~~-~~~~~~~~ 299 (312)
+.+. .+..+ ..+|.+.+
T Consensus 283 -i~~~-~~~~l~~~l~~L~l 300 (336)
T 2ast_B 283 -VPDG-TLQLLKEALPHLQI 300 (336)
T ss_dssp -SCTT-CHHHHHHHSTTSEE
T ss_pred -cCHH-HHHHHHhhCcceEE
Confidence 5432 22222 23555543
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.2e-18 Score=144.86 Aligned_cols=147 Identities=24% Similarity=0.224 Sum_probs=78.1
Q ss_pred CcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecC
Q 047461 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLS 207 (312)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 207 (312)
+++|++|++++|.+. .+++ +..+++|++|++++|. +..++... .++|+.|++++|.++.++ .+..+++|++|+++
T Consensus 67 l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~ 142 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG 142 (291)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECC
T ss_pred CCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEcc
Confidence 334444444444422 2222 4444444444444432 22233222 344555555555555542 34556666666666
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+|.+.+. ..++.+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|++..
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 6665443 345666666666666665544333 5566666666666666665543 5666666666666666543
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=6e-18 Score=155.87 Aligned_cols=184 Identities=23% Similarity=0.297 Sum_probs=95.6
Q ss_pred CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEE
Q 047461 59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLN 136 (312)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 136 (312)
++++|+++++.+..+|... +++|++|++++|.++.+| ..+++|+ +++.+. +..++. ++. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~----l~~ip~---l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNR----LSTLPE---LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC----CSCCCC---CCT--TCCEEE
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC----CCCcch---hhc--CCCEEE
Confidence 5666666666655555433 255666666666655444 2223333 122111 111111 222 566666
Q ss_pred cCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461 137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP 216 (312)
Q Consensus 137 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (312)
+++|.+.+ +|. .+++|++|++++|. +..+|. ..++|+.|++++|.++.+|. ++ ++|+.|++++|.+. .+|
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQ-LTMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCc-cCcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chh
Confidence 66666333 554 45666666666643 333554 23566666666666666655 33 56666666666544 344
Q ss_pred hhhhcCCCC-------CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhcc
Q 047461 217 SSLYRLKSL-------GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQL 269 (312)
Q Consensus 217 ~~l~~l~~L-------~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~ 269 (312)
. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 4 332 44 66666665543 45555555666666666666665 445544443
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=3.8e-20 Score=163.90 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=128.3
Q ss_pred CcCCCcCCcEEEcCCCCcCc----cccccccCCCcCcEEeccCCCCCCC----CCcc-c-c---------CCCCeEEcCC
Q 047461 125 LMPRLNKLVTLNLRGSKSLK----SLPSGIFNLEFLTKLDLSGCSKLKR----LPEI-S-S---------GNISWLFLRG 185 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~l~~----~p~~-~-~---------~~L~~L~l~~ 185 (312)
.+..+++|++|++++|.+.. .++..+..+++|++|++++|..... ++.. . . ++|+.|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 34677899999999999766 3677788899999999999764211 1111 0 1 6999999999
Q ss_pred cccc--cch---HHHHhcCCCCEEecCCCCCCC-----cCchhhhcCCCCCeEeccCCCCC----CcchhhhhCCCCCcE
Q 047461 186 IAIE--ELP---SSIERLLRLGYLDLSDCKRLK-----SLPSSLYRLKSLGVLSLCGCSNL----QRLPECLGQLSSPIT 251 (312)
Q Consensus 186 ~~l~--~l~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~~~~~----~~~p~~~~~l~~L~~ 251 (312)
|.++ .++ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. ..+|..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 9997 455 467789999999999998763 23336788999999999999875 668888999999999
Q ss_pred EeccCCCCcc-----cchHhhc--cCCCcEEEecCCcCCc
Q 047461 252 FNLAKTNIER-----IPESIIQ--LFVSGYLLLSYGIVED 284 (312)
Q Consensus 252 L~l~~n~l~~-----~~~~l~~--~~~L~~L~l~~n~~~~ 284 (312)
|++++|.++. ++..+.. +++|++|++++|.+.+
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 9999999983 4566644 8999999999999987
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=2.8e-18 Score=137.53 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=128.1
Q ss_pred CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCccccc-chHHHHhcCCCC
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEE-LPSSIERLLRLG 202 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~-l~~~~~~l~~L~ 202 (312)
..+.+++|++|++++|. ...+| .+..+++|++|++++| .+..++... .++|+.|++++|.++. .+..++.+++|+
T Consensus 39 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 39 TEAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp BHHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred ChhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34567799999999998 44666 5888999999999997 555555444 5789999999999986 566788899999
Q ss_pred EEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461 203 YLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 203 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
+|++++|.+.+..+..++.+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|++|++++|++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 99999999888788889999999999999988566676 6889999999999999999876 688899999999999987
Q ss_pred Cc
Q 047461 283 ED 284 (312)
Q Consensus 283 ~~ 284 (312)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 54
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=3.3e-18 Score=149.37 Aligned_cols=223 Identities=19% Similarity=0.187 Sum_probs=162.0
Q ss_pred ccCCCCCCCCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCccc-chh-hhcccCCCchhcchhhcccccccC-CCCC
Q 047461 50 SYLQDPGFAEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIK-RLW-DCVKHYSKLNQIIHAACHKLIAKI-PNPT 124 (312)
Q Consensus 50 ~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~-~~~-~~~~~l~~L~~l~~~~~~~~~~~~-~~~~ 124 (312)
.+|..+ ..++++|++++|.++.++.. + .+++|++|++++|.+. .++ ..+..++++..+....... +..+ +.
T Consensus 23 ~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~-- 98 (350)
T 4ay9_X 23 EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPE-- 98 (350)
T ss_dssp SCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTT--
T ss_pred ccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCch--
Confidence 344443 26799999999999998864 3 7899999999999875 455 3467777776432222222 2333 33
Q ss_pred CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc----cCCCCeEEcCCcccccchHHHHhcCC
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFLRGIAIEELPSSIERLLR 200 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~~l~~l~~~~~~l~~ 200 (312)
.+..+++|++|++++|.+....+..+....++..+++.+++.+..++... ...++.|++++|+++.++.......+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 78889999999999998544434344566778889998877776665432 24678899999999999887666778
Q ss_pred CCEEecCCCCCCCcCch-hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC-CCcccchHhhccCCCcEEEec
Q 047461 201 LGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT-NIERIPESIIQLFVSGYLLLS 278 (312)
Q Consensus 201 L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~l~~~~~L~~L~l~ 278 (312)
|+++++.+++..+.+|. .++.+++|+.|++++|.+. .+|.. .+.+|+.|.+.++ .++.+|. +..+++|+.+++.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 99999987666666664 5788999999999998754 45543 4667777777664 4667775 7789999999987
Q ss_pred CC
Q 047461 279 YG 280 (312)
Q Consensus 279 ~n 280 (312)
++
T Consensus 255 ~~ 256 (350)
T 4ay9_X 255 YP 256 (350)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.1e-17 Score=155.55 Aligned_cols=125 Identities=24% Similarity=0.261 Sum_probs=55.5
Q ss_pred CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEec
Q 047461 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDL 206 (312)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 206 (312)
.+++|+.|++++|.+ ..++ .+..+++|+.|++++|. +..++... +++|+.|++++|.++.+ ..++.+++|+.|+|
T Consensus 85 ~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 85 NLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSL 160 (605)
T ss_dssp GCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEEC
T ss_pred cCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEEC
Confidence 344555555555552 2222 34455555555555532 22233222 34444444444444444 23344444444444
Q ss_pred CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
++|.+.+..| +..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEE
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCc
Confidence 4444433322 4444444444444443332 22 2444444444444444443
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=2.5e-17 Score=137.10 Aligned_cols=165 Identities=17% Similarity=0.135 Sum_probs=136.2
Q ss_pred cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc-c-cCCCCeEEcCCcccccchH-
Q 047461 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI-S-SGNISWLFLRGIAIEELPS- 193 (312)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~-~-~~~L~~L~l~~~~l~~l~~- 193 (312)
...+|. .+. +.+++|++++|.+.+..+..+..+++|++|++++|......+.. . .++|+.|++++|.++.++.
T Consensus 26 l~~~p~--~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 26 LDSVPS--GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CSSCCS--CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccccCC--CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence 344544 444 48999999999977776777889999999999996544333322 1 5799999999999998874
Q ss_pred HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCC
Q 047461 194 SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVS 272 (312)
Q Consensus 194 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L 272 (312)
.++.+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 46789999999999999887666667889999999999998877666678999999999999999996664 68889999
Q ss_pred cEEEecCCcCCcc
Q 047461 273 GYLLLSYGIVEDT 285 (312)
Q Consensus 273 ~~L~l~~n~~~~~ 285 (312)
++|++++|++...
T Consensus 182 ~~L~l~~N~~~c~ 194 (251)
T 3m19_A 182 QTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSCCBCTT
T ss_pred CEEEeeCCceeCC
Confidence 9999999998654
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=2.8e-19 Score=156.92 Aligned_cols=239 Identities=14% Similarity=0.039 Sum_probs=141.6
Q ss_pred cchhcCCCCCcEEEeeccccccccccccccCCCCCC-C-CccEEeeCCCCCCCCCCcc--Cc-----CCccEEeCCCCcc
Q 047461 22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-A-EVKYLHWHGYPLKSLPSNL--SA-----EKLMLLEVPDSDI 92 (312)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~-~L~~L~l~~~~~~~~~~~~--~l-----~~L~~L~l~~~~~ 92 (312)
+..+...++|++|++++|.+.+... ..+...+.. + +|++|++++|.+....... .+ ++|++|++++|.+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 3445555568899998877533311 111122333 4 7888888888876654321 22 7888888888887
Q ss_pred cchh-hhcccCCCchhcchhhcccccccCCCCCCcCCC-cCCcEEEcCCCCcCcccccc----ccC-CCcCcEEeccCCC
Q 047461 93 KRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL-NKLVTLNLRGSKSLKSLPSG----IFN-LEFLTKLDLSGCS 165 (312)
Q Consensus 93 ~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~ 165 (312)
+... ..+.. .+..+ ++|++|++++|.+....+.. +.. .++|++|++++|.
T Consensus 93 ~~~~~~~l~~-----------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 93 SYKSSDELVK-----------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp GGSCHHHHHH-----------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred ChHHHHHHHH-----------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 6432 11110 12222 46777888777754433322 223 2577788887754
Q ss_pred CCCCC----Cccc--c-CCCCeEEcCCcccccch-----HHHHhc-CCCCEEecCCCCCCCc----CchhhhcC-CCCCe
Q 047461 166 KLKRL----PEIS--S-GNISWLFLRGIAIEELP-----SSIERL-LRLGYLDLSDCKRLKS----LPSSLYRL-KSLGV 227 (312)
Q Consensus 166 ~l~~~----p~~~--~-~~L~~L~l~~~~l~~l~-----~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~ 227 (312)
....- +... . ++|+.|++++|.++... ..+..+ ++|++|++++|.+.+. ++..+... ++|++
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 32211 1110 1 37888888888776433 234444 4788888888876552 44455553 47888
Q ss_pred EeccCCCCCCcch----hhhhCCCCCcEEeccCCCCccc--------chHhhccCCCcEEEecCCcCCcc
Q 047461 228 LSLCGCSNLQRLP----ECLGQLSSPITFNLAKTNIERI--------PESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 228 L~l~~~~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~--------~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
|++++|.+.+..+ ..+..+++|+.|++++|.+..+ +..+..+++|++|++++|++.+.
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8888887765433 3345667888888888874322 22345667788888888887654
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=147.29 Aligned_cols=218 Identities=16% Similarity=0.054 Sum_probs=154.9
Q ss_pred CcCCccEEeCCCCcccc--hhh--hcccCCCchhcchhhcccccccCCCCCCc--CCCcCCcEEEcCCCCcCcccc----
Q 047461 78 SAEKLMLLEVPDSDIKR--LWD--CVKHYSKLNQIIHAACHKLIAKIPNPTLM--PRLNKLVTLNLRGSKSLKSLP---- 147 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~--~~~--~~~~l~~L~~l~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---- 147 (312)
....++.+.+.++.+.. +.. ....+++|+.|...... +....+. .+ +.+++|++|++++|.+.+..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPP--LPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCC--CSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhh--hhhhccCCCCCEEEeecccccchhhhhHH
Confidence 34457788888777652 211 12244567744443321 1233444 55 789999999999999766544
Q ss_pred ccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc---chH--HHHhcCCCCEEecCCCCCCCcCch---
Q 047461 148 SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE---LPS--SIERLLRLGYLDLSDCKRLKSLPS--- 217 (312)
Q Consensus 148 ~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~---l~~--~~~~l~~L~~L~l~~n~~~~~~~~--- 217 (312)
..+..+++|++|++++|......+... .++|++|++++|.+.. ++. .++.+++|++|++++|++.. ++.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence 234578999999999976544333332 5789999999998764 332 23678999999999998753 233
Q ss_pred -hhhcCCCCCeEeccCCCCCCcchhhhhCC---CCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCC
Q 047461 218 -SLYRLKSLGVLSLCGCSNLQRLPECLGQL---SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNH 293 (312)
Q Consensus 218 -~l~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 293 (312)
.++.+++|++|++++|.+.+..|..+..+ ++|++|++++|.++.+|..+. ++|++|++++|++.+..... .
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~---~ 292 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPD---E 292 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTT---S
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhh---h
Confidence 25688999999999999888878777666 699999999999998888764 89999999999998754343 4
Q ss_pred CCchhHHHhhh
Q 047461 294 TPAVRWQEIWQ 304 (312)
Q Consensus 294 ~~~~~~~~~~~ 304 (312)
+|.++.++...
T Consensus 293 l~~L~~L~L~~ 303 (310)
T 4glp_A 293 LPEVDNLTLDG 303 (310)
T ss_dssp CCCCSCEECSS
T ss_pred CCCccEEECcC
Confidence 55555544433
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.1e-17 Score=138.23 Aligned_cols=192 Identities=14% Similarity=0.080 Sum_probs=127.8
Q ss_pred CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCC-CCCCCCc-c-CcCCccEEeCCC-CcccchhhhcccCC
Q 047461 29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYP-LKSLPSN-L-SAEKLMLLEVPD-SDIKRLWDCVKHYS 103 (312)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~~~~~-~-~l~~L~~L~l~~-~~~~~~~~~~~~l~ 103 (312)
++|++|+++++.+.+ ..+..+.. ++|++|++++|. +..++.. + .+++|++|++++ |.++.++..
T Consensus 31 ~~l~~L~l~~n~l~~------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~----- 99 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT------IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD----- 99 (239)
T ss_dssp TTCCEEEEESCCCSE------ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-----
T ss_pred CcccEEEEeCCcceE------ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-----
Confidence 489999999987521 11234545 899999999997 8888763 3 889999999998 888765421
Q ss_pred CchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc---EEeccCCCCCCCCCccc---cCC
Q 047461 104 KLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT---KLDLSGCSKLKRLPEIS---SGN 177 (312)
Q Consensus 104 ~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~l~~~p~~~---~~~ 177 (312)
.+..+++|++|++++|.+ ..+|. +..+++|+ +|++++|..+..+|... .++
T Consensus 100 ---------------------~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~ 156 (239)
T 2xwt_C 100 ---------------------ALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN 156 (239)
T ss_dssp ---------------------SEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred ---------------------HhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence 344455666666666653 33454 55555555 66666653444444321 346
Q ss_pred CC-eEEcCCcccccchHHHHhcCCCCEEecCCCC-CCCcCchhhhcC-CCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461 178 IS-WLFLRGIAIEELPSSIERLLRLGYLDLSDCK-RLKSLPSSLYRL-KSLGVLSLCGCSNLQRLPECLGQLSSPITFNL 254 (312)
Q Consensus 178 L~-~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 254 (312)
|+ .+++++|.++.+|......++|++|++++|+ +.+..+..+..+ ++|+.|++++|.+. .+|.. .+++|+.|++
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIA 233 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEEC
T ss_pred ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeec
Confidence 66 7777777777666543333678888888884 555545567777 78888888887664 45544 6678888888
Q ss_pred cCC
Q 047461 255 AKT 257 (312)
Q Consensus 255 ~~n 257 (312)
+++
T Consensus 234 ~~~ 236 (239)
T 2xwt_C 234 RNT 236 (239)
T ss_dssp TTC
T ss_pred cCc
Confidence 765
No 95
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=1.2e-18 Score=162.56 Aligned_cols=238 Identities=11% Similarity=-0.039 Sum_probs=149.8
Q ss_pred CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccc--hhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461 58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKR--LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT 134 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 134 (312)
++|+.+.+.++....++..+ .+++|++|++++|.+.. +...+..+++|+.|.....-. ...++. ....+++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~-~~~l~~--~~~~~~~L~~ 346 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG-DRGLEV--LAQYCKQLKR 346 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-HHHHHH--HHHHCTTCCE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC-HHHHHH--HHHhCCCCCE
Confidence 55666666655444455444 56788888888877552 223356777777443321100 111221 2345678888
Q ss_pred EEcCC----------C-CcCcc-ccccccCCCcCcEEeccCCCCCCCCC-cc--ccCCCCeEEcC----Cccccc-----
Q 047461 135 LNLRG----------S-KSLKS-LPSGIFNLEFLTKLDLSGCSKLKRLP-EI--SSGNISWLFLR----GIAIEE----- 190 (312)
Q Consensus 135 L~l~~----------~-~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~p-~~--~~~~L~~L~l~----~~~l~~----- 190 (312)
|++++ + .+... ++.....+++|++|+++.+......+ .. ..++|+.|++. .+.+++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 88883 3 32222 22223357888888886533222111 11 13678999985 556765
Q ss_pred -chHHHHhcCCCCEEecCCCC--CCCcCchhhh-cCCCCCeEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCc--ccc
Q 047461 191 -LPSSIERLLRLGYLDLSDCK--RLKSLPSSLY-RLKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIE--RIP 263 (312)
Q Consensus 191 -l~~~~~~l~~L~~L~l~~n~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~--~~~ 263 (312)
++..+..+++|++|++++|. +.+..+..++ .+++|+.|++++|.+.+ .++..+..+++|+.|++++|.++ .++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 44456778999999997654 4443333343 47889999999988775 45666788999999999999987 355
Q ss_pred hHhhccCCCcEEEecCCcCCccccccccCCCCchh
Q 047461 264 ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVR 298 (312)
Q Consensus 264 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 298 (312)
..+..+++|++|++++|++++.........+|.+.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence 66678999999999999987643332223456544
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=2.2e-19 Score=167.57 Aligned_cols=256 Identities=14% Similarity=0.048 Sum_probs=132.1
Q ss_pred cCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCC-----Ccc-CcCCccEEeCCCCcccchhhh
Q 047461 26 TKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLP-----SNL-SAEKLMLLEVPDSDIKRLWDC 98 (312)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~-----~~~-~l~~L~~L~l~~~~~~~~~~~ 98 (312)
.++++|++|++++|.+.+.+. ..+...... ++|++|+++++.+..+. ..+ .+++|++|++++|.+..++..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDG--KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCS--HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred hhCCCCCEEECccccccCcch--hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 367788888888765422210 001111112 67888888888765332 122 578888999988888777777
Q ss_pred cccCCCchhcchhhcccc-------------------------cccCCCCCCcCCCcCCcEEEcCCCCcCcccc-ccccC
Q 047461 99 VKHYSKLNQIIHAACHKL-------------------------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP-SGIFN 152 (312)
Q Consensus 99 ~~~l~~L~~l~~~~~~~~-------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~ 152 (312)
+..+++|+.+........ ...++. .+..+++|++|++++|.+..... ..+..
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 777777775544321110 011111 33445566666666665322111 11223
Q ss_pred CCcCcEEeccC----------------------------------CCCCCC--CCccc--cCCCCeEEcCCccccc-chH
Q 047461 153 LEFLTKLDLSG----------------------------------CSKLKR--LPEIS--SGNISWLFLRGIAIEE-LPS 193 (312)
Q Consensus 153 ~~~L~~L~l~~----------------------------------~~~l~~--~p~~~--~~~L~~L~l~~~~l~~-l~~ 193 (312)
+++|+.|+++. |+.+.. ++... .++|+.|++..+.++. .+.
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 33444433331 111111 00000 2344444444344432 112
Q ss_pred HHH-hcCCCCEEecC----CCCCCCc-----CchhhhcCCCCCeEeccCCC--CCCcchhhhh-CCCCCcEEeccCCCCc
Q 047461 194 SIE-RLLRLGYLDLS----DCKRLKS-----LPSSLYRLKSLGVLSLCGCS--NLQRLPECLG-QLSSPITFNLAKTNIE 260 (312)
Q Consensus 194 ~~~-~l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~p~~~~-~l~~L~~L~l~~n~l~ 260 (312)
.++ .+++|++|+++ .+.+.+. ++..+..+++|+.|+++.|. +.+..+..+. .+++|+.|++++|.++
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence 222 25555555554 2222221 22234456666666665443 3333333333 3677888888888887
Q ss_pred --ccchHhhccCCCcEEEecCCcCCcc
Q 047461 261 --RIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 261 --~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
.++..+..+++|++|++++|++.+.
T Consensus 477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 477 DEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 4555667788888888888887543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=2.7e-16 Score=144.92 Aligned_cols=192 Identities=18% Similarity=0.220 Sum_probs=149.6
Q ss_pred hhcCCC-----CCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhh
Q 047461 24 TFTKMP-----KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDC 98 (312)
Q Consensus 24 ~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 98 (312)
.|..++ +++.|+++++.+.+ ++..+. ++|++|++++|.+..+| ..+++|++|++++|.++.+|.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-------lp~~l~-~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~- 117 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS-------LPDNLP-PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE- 117 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC-------CCSCCC-TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-
T ss_pred hhhhccccccCCccEEEeCCCCCCc-------cCHhHc-CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-
Confidence 355554 89999999977522 333332 78999999999999888 457899999999999998877
Q ss_pred cccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccC
Q 047461 99 VKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG 176 (312)
Q Consensus 99 ~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~ 176 (312)
+.. +|+ +++.+. +..+|. .+++|++|++++|.+. .+|. .+++|++|++++|. +..+|... +
T Consensus 118 l~~--~L~~L~Ls~N~----l~~lp~-----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~l~-~ 180 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQ----LTMLPE-----LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPELP-E 180 (571)
T ss_dssp CCT--TCCEEECCSSC----CSCCCC-----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCCCC-T
T ss_pred hhc--CCCEEECCCCc----CCCCCC-----cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcchhh-C
Confidence 544 777 444444 333432 5779999999999954 4776 67899999999965 55577744 8
Q ss_pred CCCeEEcCCcccccchHHHHhcCCC-------CEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC
Q 047461 177 NISWLFLRGIAIEELPSSIERLLRL-------GYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 247 (312)
+|+.|++++|.++.+|. +.. +| +.|++++|.+. .+|..++.+++|+.|++++|.+.+..|..+..+.
T Consensus 181 ~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 181 SLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp TCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99999999999999887 443 67 99999999875 5788888899999999999999999998877653
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=4.4e-18 Score=149.31 Aligned_cols=201 Identities=17% Similarity=0.136 Sum_probs=143.1
Q ss_pred CCccEEeeCCCCCCCCCC-----cc-CcC-CccEEeCCCCcccchh-hhcccCCCchhcchhhcccccccCCCCCCcCC-
Q 047461 58 AEVKYLHWHGYPLKSLPS-----NL-SAE-KLMLLEVPDSDIKRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPR- 128 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~-----~~-~l~-~L~~L~l~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~- 128 (312)
.+|++|++++|.+...+. .+ .++ +|++|++++|.++... ..+.. .+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-----------------------~l~~~ 78 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-----------------------ILAAI 78 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-----------------------HHHTS
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-----------------------HHhcc
Confidence 458888888887776653 22 566 7888888887776432 11110 1112
Q ss_pred CcCCcEEEcCCCCcCcccccc----ccCC-CcCcEEeccCCCCCCCCCccc--------cCCCCeEEcCCcccc-----c
Q 047461 129 LNKLVTLNLRGSKSLKSLPSG----IFNL-EFLTKLDLSGCSKLKRLPEIS--------SGNISWLFLRGIAIE-----E 190 (312)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~l~~~p~~~--------~~~L~~L~l~~~~l~-----~ 190 (312)
.++|++|++++|.+....+.. +..+ ++|++|++++|. ++..+... ..+|++|++++|.++ .
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 258999999999965554443 3344 899999999976 34333211 258999999999998 3
Q ss_pred chHHHHhcC-CCCEEecCCCCCCCcCchh----hhcC-CCCCeEeccCCCCCCc----chhhhhC-CCCCcEEeccCCCC
Q 047461 191 LPSSIERLL-RLGYLDLSDCKRLKSLPSS----LYRL-KSLGVLSLCGCSNLQR----LPECLGQ-LSSPITFNLAKTNI 259 (312)
Q Consensus 191 l~~~~~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~----~p~~~~~-l~~L~~L~l~~n~l 259 (312)
++..+..++ +|++|++++|.+.+..+.. +... ++|++|++++|.+.+. ++..+.. .++|+.|++++|.+
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 556666666 9999999999987766643 3445 5999999999987653 5666666 45999999999999
Q ss_pred cccch-----HhhccCCCcEEEecCCcC
Q 047461 260 ERIPE-----SIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 260 ~~~~~-----~l~~~~~L~~L~l~~n~~ 282 (312)
+..+. .+..+++|++|++++|.+
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 85432 346789999999999984
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=6.1e-16 Score=131.47 Aligned_cols=163 Identities=25% Similarity=0.268 Sum_probs=133.9
Q ss_pred cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEE
Q 047461 126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYL 204 (312)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 204 (312)
...+++|++|++++|. ...++. +..+++|++|++++|. +..++... .++|+.|++++|.++.++. ++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 4567899999999998 455554 7789999999999965 45555443 6899999999999999875 8889999999
Q ss_pred ecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 205 DLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 205 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence 9999987663 4588999999999999887654 578899999999999999997766 8899999999999999987
Q ss_pred cccccccCCCCchhHH
Q 047461 285 TLRIQHTNHTPAVRWQ 300 (312)
Q Consensus 285 ~~~~~~~~~~~~~~~~ 300 (312)
...+. .++.++.+
T Consensus 193 l~~l~---~l~~L~~L 205 (291)
T 1h6t_A 193 LRALA---GLKNLDVL 205 (291)
T ss_dssp CGGGT---TCTTCSEE
T ss_pred Chhhc---cCCCCCEE
Confidence 55444 45555443
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=1.9e-16 Score=129.84 Aligned_cols=151 Identities=22% Similarity=0.217 Sum_probs=126.7
Q ss_pred CCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHH-HHhcCCCCEEecC
Q 047461 131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLS 207 (312)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~ 207 (312)
.-+.++.+++. .+.+|..+ .++|++|++++|...+..|... .++|+.|++++|.++.+|.. ++.+++|++|+++
T Consensus 20 s~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 46789998877 77788755 4899999999966444334322 57899999999999998854 6889999999999
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCcc
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~ 285 (312)
+|++.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 99988776777889999999999998765 788889999999999999999997764 578899999999999988653
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=2.9e-16 Score=127.91 Aligned_cols=148 Identities=17% Similarity=0.135 Sum_probs=95.5
Q ss_pred cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCC-Cc--c-ccCCCCeEEcCCcccccchH-HHHhcCCCCEEecC
Q 047461 133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-PE--I-SSGNISWLFLRGIAIEELPS-SIERLLRLGYLDLS 207 (312)
Q Consensus 133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-p~--~-~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~ 207 (312)
+.++++++. .+.+|..+ .+.+++|++++|. +..+ +. . ..++|+.|++++|.++.++. .++.+++|++|+++
T Consensus 14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCC-cccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 456666655 34455433 2345666666643 3322 21 1 13566677777777766554 46667777777777
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCc
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7777666666677777777777777777666677777777777777777777754 5567777777777777777654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=4.9e-16 Score=144.51 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=92.5
Q ss_pred CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461 58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL 137 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 137 (312)
.+|++|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|...... +..++ .++.+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~~l~---~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK--IKDLS---SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CCCCT---TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC--CCCCh---hhccCCCCCEEEe
Confidence 4455555555555444443345555555555555544433 4445555522221110 11122 4556667777777
Q ss_pred CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461 138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP 216 (312)
Q Consensus 138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~ 216 (312)
++|.+. .++ .+..+++|+.|++++|. +..++... +++|+.|++++|.++.++. +..+++|+.|+|++|.+.+ ++
T Consensus 117 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~ 191 (605)
T 1m9s_A 117 EHNGIS-DIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR 191 (605)
T ss_dssp TTSCCC-CCG-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG
T ss_pred cCCCCC-CCc-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch
Confidence 777643 333 35667777777777743 33334333 4567777777777776655 6667777777777766544 23
Q ss_pred hhhhcCCCCCeEeccCCCCCC
Q 047461 217 SSLYRLKSLGVLSLCGCSNLQ 237 (312)
Q Consensus 217 ~~l~~l~~L~~L~l~~~~~~~ 237 (312)
.+..+++|+.|++++|.+.+
T Consensus 192 -~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -GGTTCTTCSEEECCSEEEEC
T ss_pred -HHccCCCCCEEEccCCcCcC
Confidence 36667777777777665543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=5e-16 Score=125.38 Aligned_cols=134 Identities=22% Similarity=0.132 Sum_probs=56.8
Q ss_pred CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCE
Q 047461 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGY 203 (312)
Q Consensus 128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~ 203 (312)
.+++|++|++++|.+.+..+..+..+++|++|++++|. +..++... .++|++|++++|.++.++.. ++.+++|++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 128 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence 34445555555554322222223344444555444432 22222110 23344444444444433322 344455555
Q ss_pred EecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhcc
Q 047461 204 LDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQL 269 (312)
Q Consensus 204 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~ 269 (312)
|++++|.+.+..+..+..+++|+.|++++|.+.. .+++|+.|+++.|.++ .+|+.++.+
T Consensus 129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred EECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 5555555444333334445555555555543322 2334445555555554 444444433
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.7e-16 Score=132.95 Aligned_cols=169 Identities=22% Similarity=0.198 Sum_probs=100.4
Q ss_pred CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461 59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR 138 (312)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (312)
++..++++++.+..++....+++|++|++++|.++.++ .++.+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~----------------------------~l~~l~~L~~L~L~ 71 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA----------------------------GMQFFTNLKELHLS 71 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT----------------------------TGGGCTTCCEEECC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch----------------------------HHhhCCCCCEEECC
Confidence 34444555555555543335556666666665554332 23344566777777
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchh
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSS 218 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~ 218 (312)
+|.+ ..+++ +..+++|++|++++|. +..+|.....+|+.|++++|.++.++ .++.+++|++|++++|++.+. + .
T Consensus 72 ~N~i-~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~ 145 (263)
T 1xeu_A 72 HNQI-SDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-M 145 (263)
T ss_dssp SSCC-CCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-G
T ss_pred CCcc-CCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-H
Confidence 7663 33333 5666777777777643 33344333356777777777776664 366677777777777765443 3 4
Q ss_pred hhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc
Q 047461 219 LYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP 263 (312)
Q Consensus 219 l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 263 (312)
++.+++|+.|++++|.+.+. ..+..+++|+.|++++|+++..|
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 66677777777777666554 45666777777777777766433
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=2.5e-16 Score=128.31 Aligned_cols=149 Identities=20% Similarity=0.172 Sum_probs=124.9
Q ss_pred CcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecC
Q 047461 132 LVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLS 207 (312)
Q Consensus 132 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~ 207 (312)
-+.++.+++. ...+|..+. ++++.|++++|. +..++... .++|+.|++++|.++.+ |..+..+++|++|+++
T Consensus 13 ~~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKG-LTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSC-CSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCC-cCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 3678888877 667777553 789999999964 44444321 47899999999999987 6678899999999999
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCc
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~ 284 (312)
+|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++.-
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999876655667889999999999999888888899999999999999999997665 58889999999999998854
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=127.23 Aligned_cols=154 Identities=17% Similarity=0.120 Sum_probs=129.0
Q ss_pred CcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchH--HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461 156 LTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPS--SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC 233 (312)
Q Consensus 156 L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 233 (312)
-+.+++++ +.+..+|......++.|++++|.++.++. .++.+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 13 ~~~l~~s~-n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSN-QKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCS-SCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCC-CCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35888888 45666776555788999999999998843 4788999999999999988877778999999999999999
Q ss_pred CCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 234 SNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 234 ~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+..+ ..+..++.++.++...+.|.+.|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCC
Confidence 99888888899999999999999999965 6778899999999999999987433 44556777777777777777666
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=1.7e-15 Score=124.23 Aligned_cols=129 Identities=25% Similarity=0.170 Sum_probs=112.1
Q ss_pred cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCEEe
Q 047461 130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGYLD 205 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~ 205 (312)
++|++|++++|.+.+..|..+..+++|++|++++|. +..+|... .++|+.|++++|.++.++.. +..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 689999999999777778888899999999999965 56665432 57899999999999998764 67899999999
Q ss_pred cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
+++|++. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999876 67888899999999999999887666677889999999999999987
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=9.6e-16 Score=124.85 Aligned_cols=131 Identities=23% Similarity=0.213 Sum_probs=111.9
Q ss_pred cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHH-HHhcCCCCEEec
Q 047461 130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERLLRLGYLDL 206 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l 206 (312)
+++++|++++|.+.+..+..+..+++|++|++++|......|... .++|+.|++++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 589999999999655555578889999999999965433223322 57899999999999998865 578999999999
Q ss_pred CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
++|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999998888888999999999999999988777778889999999999999986
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=5.7e-16 Score=123.99 Aligned_cols=146 Identities=19% Similarity=0.172 Sum_probs=123.6
Q ss_pred cCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEe
Q 047461 151 FNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLS 229 (312)
Q Consensus 151 ~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 229 (312)
..+++|+.|++++| .+..+|... .++|+.|++++|.++.++ .+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 46888999999995 455666544 689999999999888775 577899999999999998887788899999999999
Q ss_pred ccCCCCCCcchhhhhCCCCCcEEeccCCC-CcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHh
Q 047461 230 LCGCSNLQRLPECLGQLSSPITFNLAKTN-IERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEI 302 (312)
Q Consensus 230 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 302 (312)
+++|.+.+..|..+..+++|+.|++++|. ++.+| .+..+++|++|++++|++.+...+. .+|.++.++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~---~l~~L~~L~l 188 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYA 188 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGG---GCSSCCEEEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhc---cCCCCCEEEe
Confidence 99999988889999999999999999998 88876 6889999999999999998855555 4555554443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=2.9e-16 Score=137.65 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=115.1
Q ss_pred CCcEEEcCCCCcCcccccccc-CCCcCcEEeccCCCCCCCCCcc-c--cCCCCeEEcCCcccccchH-HHHhcCCCCEEe
Q 047461 131 KLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEI-S--SGNISWLFLRGIAIEELPS-SIERLLRLGYLD 205 (312)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~p~~-~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~ 205 (312)
.++.|++++|.+.+..+..+. .+++|++|++++|. +..++.. . .++|+.|++++|.++.++. .+..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 588999999985554455555 78999999999854 4444422 1 4688999999999888765 467888999999
Q ss_pred cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh---hCCCCCcEEeccCCCCcccc-hHhhccCC--CcEEEecC
Q 047461 206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL---GQLSSPITFNLAKTNIERIP-ESIIQLFV--SGYLLLSY 279 (312)
Q Consensus 206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~---~~l~~L~~L~l~~n~l~~~~-~~l~~~~~--L~~L~l~~ 279 (312)
+++|++.+..+..+..+++|+.|++++|.+.+-.+..+ ..+++|+.|++++|.|+.+| ..+..++. ++.|++++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 99998887777788888999999999887665333333 56888999999999998776 45667776 47889999
Q ss_pred CcCC
Q 047461 280 GIVE 283 (312)
Q Consensus 280 n~~~ 283 (312)
|++.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 8875
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=2.5e-15 Score=131.64 Aligned_cols=173 Identities=22% Similarity=0.203 Sum_probs=124.6
Q ss_pred ccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcC-CCcCCcEEEcC
Q 047461 60 VKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMP-RLNKLVTLNLR 138 (312)
Q Consensus 60 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~ 138 (312)
-+.++.+++.+..+|..+ ...++.|++++|.++.++.. .+. .+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~--------------------------~~~~~l~~L~~L~L~ 72 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAE--------------------------WTPTRLTNLHSLLLS 72 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTT--------------------------SSSSCCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChh--------------------------hhhhcccccCEEECC
Confidence 356777777787777643 34578888888887754322 233 56677888888
Q ss_pred CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCc
Q 047461 139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKS 214 (312)
Q Consensus 139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~ 214 (312)
+|.+.+..+..+..+++|++|++++|. +..++... ..+|+.|++++|.++.+ +..+..+++|++|++++|++.+.
T Consensus 73 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 73 HNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence 877554444567777888888888754 44333321 46788888888888876 45688899999999999987664
Q ss_pred Cchhh---hcCCCCCeEeccCCCCCCcchhhhhCCCC--CcEEeccCCCCc
Q 047461 215 LPSSL---YRLKSLGVLSLCGCSNLQRLPECLGQLSS--PITFNLAKTNIE 260 (312)
Q Consensus 215 ~~~~l---~~l~~L~~L~l~~~~~~~~~p~~~~~l~~--L~~L~l~~n~l~ 260 (312)
-+..+ ..+++|+.|++++|.+.+-.+..+..++. ++.|++++|++.
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 44444 56899999999999887666677778876 488999999987
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.1e-15 Score=123.29 Aligned_cols=151 Identities=19% Similarity=0.135 Sum_probs=111.5
Q ss_pred cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCEEe
Q 047461 130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGYLD 205 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~ 205 (312)
++|++|++++|.+.+..+..+..+++|++|++++|. +..++... .++|++|++++|.++.++.. ++.+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 478999999988654444456788999999999854 44454421 46788888888888877654 56788888888
Q ss_pred cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461 206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~ 285 (312)
+++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+++|++|++..|.+.+.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCce
Confidence 8888877665666777888888888887776655555777888888888888665 3456777888888877765
Q ss_pred cc
Q 047461 286 LR 287 (312)
Q Consensus 286 ~~ 287 (312)
.+
T Consensus 181 ip 182 (208)
T 2o6s_A 181 VR 182 (208)
T ss_dssp BB
T ss_pred ee
Confidence 55
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=6.6e-18 Score=156.12 Aligned_cols=190 Identities=17% Similarity=0.146 Sum_probs=118.3
Q ss_pred CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461 78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT 157 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 157 (312)
..++|+.|++++|.++.+|..+..+++|+.|....... ...++. .+.. +...+..|..+..+++|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~-l~~l~~--------ll~~-----~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWC-LLTIIL--------LMRA-----LDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHH--------HHHH-----HCTGGGHHHHHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchh-hhhHHH--------HHHh-----cccccCCHHHHHHHHhcc
Confidence 56788889999999988888888888888554322100 000000 0000 011223333344444444
Q ss_pred EEe-ccCCCCCCCCC----------ccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC
Q 047461 158 KLD-LSGCSKLKRLP----------EISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG 226 (312)
Q Consensus 158 ~L~-l~~~~~l~~~p----------~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 226 (312)
.|+ ++.+ .+..++ ......|+.|++++|.++++|. ++.+++|+.|++++|.+. .+|..++.+++|+
T Consensus 413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 444 2221 111111 1112357777777777777776 777778888888877765 6677777888888
Q ss_pred eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc--chHhhccCCCcEEEecCCcCCccc
Q 047461 227 VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI--PESIIQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 227 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~l~~~~~L~~L~l~~n~~~~~~ 286 (312)
.|++++|.+.+ +| .++.+++|+.|++++|.++.+ |..++.+++|+.|++++|++.+.+
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 88888776655 66 677778888888888888755 677777888888888888776643
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.4e-15 Score=132.73 Aligned_cols=215 Identities=20% Similarity=0.252 Sum_probs=156.3
Q ss_pred cEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhh-hcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEE-E
Q 047461 61 KYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTL-N 136 (312)
Q Consensus 61 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L-~ 136 (312)
++++-+++.++.+|..+ .+++++|++++|.++.++. .+..+++|+. |+.+.. ...++. ..+.+++++.++ .
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~-~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEA-DVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT---CCEECT-TSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC---CCccCh-hHhhcchhhhhhhc
Confidence 45666777788888754 4689999999999999985 5789999994 554442 122322 257788887764 5
Q ss_pred cCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCC-cccccchHH-HHhc-CCCCEEecCCCC
Q 047461 137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRG-IAIEELPSS-IERL-LRLGYLDLSDCK 210 (312)
Q Consensus 137 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~-~~l~~l~~~-~~~l-~~L~~L~l~~n~ 210 (312)
+..|.+....|..+..+++|++|++++|. +..+|... ..++..+++.+ +.++.++.. +..+ ..++.|++++|+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 55677555456678889999999999954 45455433 34566777755 577777643 4444 468999999998
Q ss_pred CCCcCchhhhcCCCCCeEeccCCCCCCcchh-hhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461 211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+.. ++...+..++|+++++.+++..+.+|. .|..+++|+.|++++|+|+.+|. ..+.+|+.|.+.++.-.+
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCC
T ss_pred ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcC
Confidence 754 555556677899999998777777775 57899999999999999999887 346778888877765433
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.9e-15 Score=126.52 Aligned_cols=151 Identities=21% Similarity=0.188 Sum_probs=126.0
Q ss_pred CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCE
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGY 203 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 203 (312)
.+..+++|++|++++|. ...++ .+..+++|++|++++|. +..++... .++|+.|++++|.++++|.... ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 35567899999999998 55666 58889999999999964 55566544 6799999999999998876433 89999
Q ss_pred EecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461 204 LDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 204 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~ 283 (312)
|++++|++.+ ++ .++.+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|++.
T Consensus 111 L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 111 LFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp EECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred EEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 9999998766 34 48899999999999988755 44 688999999999999999977 66889999999999999986
Q ss_pred cc
Q 047461 284 DT 285 (312)
Q Consensus 284 ~~ 285 (312)
..
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.5e-15 Score=119.71 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=67.2
Q ss_pred cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCc---cc-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecC
Q 047461 133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---IS-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLS 207 (312)
Q Consensus 133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~---~~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~ 207 (312)
++++++++. .+.+|..+. .++++|++++|. +..++. .. .++|+.|++++|.++.+ |..++.+++|++|+++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCC-cCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 667777776 456665442 266666666643 333332 11 34555555555555554 3345555555555555
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
+|++.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 55555544444555555555555555555555555555555555555555554
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=6.4e-17 Score=150.88 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=72.3
Q ss_pred CCCCeEEcCCcccccc-hHHH-HhcCCCCEEecC--C---CCCCCcC------chhhhcCCCCCeEeccCCCCCCcchhh
Q 047461 176 GNISWLFLRGIAIEEL-PSSI-ERLLRLGYLDLS--D---CKRLKSL------PSSLYRLKSLGVLSLCGCSNLQRLPEC 242 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l-~~~~-~~l~~L~~L~l~--~---n~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~~p~~ 242 (312)
++|+.|.+..+.++.. ...+ ..+++|++|+++ + |...+.. +..+..+++|+.|++++ .+.+..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 3455554444444421 1122 346777777777 2 2222221 22255667788888866 555555555
Q ss_pred hhC-CCCCcEEeccCCCCc-c-cchHhhccCCCcEEEecCCcCCccccccccCCCCchhH
Q 047461 243 LGQ-LSSPITFNLAKTNIE-R-IPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRW 299 (312)
Q Consensus 243 ~~~-l~~L~~L~l~~n~l~-~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 299 (312)
+.. +++|+.|++++|.++ . ++.....+++|++|++++|++.+.........++.++.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 554 788999999999887 2 32333678999999999999854333323333454443
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.1e-15 Score=116.53 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA 255 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 255 (312)
.+++.|++++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 46666667777777777667777788888888877776666667777888888888777766666677777888888888
Q ss_pred CCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461 256 KTNIERIPE-SIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 256 ~n~l~~~~~-~l~~~~~L~~L~l~~n~~~ 283 (312)
+|.++.+|. .+..+++|+.|++++|++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888876665 4667778888888887764
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=2e-17 Score=152.94 Aligned_cols=170 Identities=19% Similarity=0.135 Sum_probs=121.3
Q ss_pred CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCC-------------CCCCCCccc--cCCCCeEE-cCCccccc
Q 047461 127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS-------------KLKRLPEIS--SGNISWLF-LRGIAIEE 190 (312)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~l~~~p~~~--~~~L~~L~-l~~~~l~~ 190 (312)
..++.|+.|++++|. .+.+|.+++.+++|+.|++++|. ..+..|... .++|+.|+ +..+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 556788889999887 56788888888888888886542 122222111 34666776 55555444
Q ss_pred chH------HHHh--cCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc
Q 047461 191 LPS------SIER--LLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI 262 (312)
Q Consensus 191 l~~------~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 262 (312)
++. .+.. ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.++.+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence 332 1111 2368999999988765 666 889999999999998776 8888999999999999999999988
Q ss_pred chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461 263 PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE 301 (312)
Q Consensus 263 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 301 (312)
| .++.+++|+.|++++|.+.+......+..++.++.++
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 7 7889999999999999987753122333455554443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.6e-14 Score=112.46 Aligned_cols=133 Identities=20% Similarity=0.135 Sum_probs=92.3
Q ss_pred CcCCcEEEcCCCCcC-ccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecC
Q 047461 129 LNKLVTLNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLS 207 (312)
Q Consensus 129 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 207 (312)
.++|++|++++|.+. +.+|..+..+++|++|++++|. +..++ .++.+++|++|+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~----------------------~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS----------------------NLPKLPKLKKLELS 79 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCS----------------------SCCCCSSCCEEEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChh----------------------hhccCCCCCEEECc
Confidence 358999999999865 4778777788888888888864 33221 23345667777777
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEeccCCCCcccch----HhhccCCCcEEEecCCcC
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLAKTNIERIPE----SIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~~ 282 (312)
+|.+.+.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+
T Consensus 80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7776665666666677777777777665442 22566777777788887777776655 667778888888888766
Q ss_pred Cc
Q 047461 283 ED 284 (312)
Q Consensus 283 ~~ 284 (312)
..
T Consensus 160 ~~ 161 (168)
T 2ell_A 160 QE 161 (168)
T ss_dssp CB
T ss_pred hh
Confidence 44
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=3e-17 Score=153.14 Aligned_cols=202 Identities=13% Similarity=0.034 Sum_probs=127.2
Q ss_pred CcCCccEEeCCCCcccc--hhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCC---------CCcCccc
Q 047461 78 SAEKLMLLEVPDSDIKR--LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRG---------SKSLKSL 146 (312)
Q Consensus 78 ~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~---------~~~~~~~ 146 (312)
.+++|++|++++|.++. +...+..+++|+.|....+.. ...++. ....+++|++|++++ +.+....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-~~~l~~--l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE-DAGLEV--LASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-HHHHHH--HHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC-HHHHHH--HHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 35678888888777552 223345677777544433210 111111 223467888888843 2222211
Q ss_pred cccc-cCCCcCcEEeccCCCCCCCCC--cc--ccCCCCeEEcC--C----ccccc------chHHHHhcCCCCEEecCCC
Q 047461 147 PSGI-FNLEFLTKLDLSGCSKLKRLP--EI--SSGNISWLFLR--G----IAIEE------LPSSIERLLRLGYLDLSDC 209 (312)
Q Consensus 147 ~~~l-~~~~~L~~L~l~~~~~l~~~p--~~--~~~~L~~L~l~--~----~~l~~------l~~~~~~l~~L~~L~l~~n 209 (312)
...+ ..+++|+.|.++.+. +.... .. ..++|+.|++. + +.++. ++..+..+++|++|++++
T Consensus 364 l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred HHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 1112 236788888666533 33211 11 14689999998 4 45663 334467789999999987
Q ss_pred CCCCcCchhhhc-CCCCCeEeccCCCCCCcchhhh-hCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCCcCCc
Q 047461 210 KRLKSLPSSLYR-LKSLGVLSLCGCSNLQRLPECL-GQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 210 ~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
.+.+..+..++. +++|+.|++++|.+.+..+..+ ..+++|+.|++++|.++ .+...+..+++|++|++++|++..
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 555544445555 8899999999998766555554 67899999999999997 233345678999999999998843
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=7e-15 Score=112.12 Aligned_cols=128 Identities=21% Similarity=0.145 Sum_probs=88.4
Q ss_pred CcCCcEEEcCCCCcC-ccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecC
Q 047461 129 LNKLVTLNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLS 207 (312)
Q Consensus 129 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 207 (312)
.+++++|++++|.+. +.+|..+..+++|++|++++|. +.. + ..++.+++|++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~---------------------~-~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTS---------------------I-ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCC---------------------C-TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCC---------------------c-hhhhcCCCCCEEECC
Confidence 357899999998865 4777767777888888877753 222 2 223445667777777
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEeccCCCCcccch----HhhccCCCcEEEecC
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLAKTNIERIPE----SIIQLFVSGYLLLSY 279 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~ 279 (312)
+|.+.+.+|..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.++. .+..+++|++|++++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7776666666666677777777777765542 34667777888888888888775554 567788888877653
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=7.4e-15 Score=114.34 Aligned_cols=125 Identities=18% Similarity=0.158 Sum_probs=103.7
Q ss_pred CCCCeEEcCCcccc--cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEe
Q 047461 176 GNISWLFLRGIAIE--ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFN 253 (312)
Q Consensus 176 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 253 (312)
++++.|++++|.++ .+|..+..+++|++|++++|.+.+. ..++.+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57888888888887 7777778899999999999987665 6688999999999999998888888888899999999
Q ss_pred ccCCCCcccc--hHhhccCCCcEEEecCCcCCcccc--ccccCCCCchhHHHh
Q 047461 254 LAKTNIERIP--ESIIQLFVSGYLLLSYGIVEDTLR--IQHTNHTPAVRWQEI 302 (312)
Q Consensus 254 l~~n~l~~~~--~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~ 302 (312)
+++|.++.+| ..+..+++|++|++++|++.+... ...+..+|.++.++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 9999999766 678999999999999999987544 123445666655443
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=4.8e-14 Score=107.42 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=82.0
Q ss_pred CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeE
Q 047461 102 YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWL 181 (312)
Q Consensus 102 l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L 181 (312)
.++++.+....+.-....++. .++.+++|++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~---------------- 75 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR---------------- 75 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC----------------
T ss_pred CccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc----------------
Confidence 456664444332210125665 778899999999999985444 556667777777777643
Q ss_pred EcCCccccc-chHHHHhcCCCCEEecCCCCCCCc-CchhhhcCCCCCeEeccCCCCCCcch---hhhhCCCCCcEEecc
Q 047461 182 FLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLKS-LPSSLYRLKSLGVLSLCGCSNLQRLP---ECLGQLSSPITFNLA 255 (312)
Q Consensus 182 ~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~l~ 255 (312)
+++ +|..++.+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 76 ------i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 76 ------VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ------CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ------ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 333 455555677777777777766552 23556777777777777776554433 456677777777765
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=3.4e-14 Score=111.51 Aligned_cols=133 Identities=18% Similarity=0.100 Sum_probs=87.3
Q ss_pred cCCCcCCcEEEcCCCCcCccccccccCCC-cCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEE
Q 047461 126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYL 204 (312)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 204 (312)
+..+++|++|++++|.+. .++. +..+. +|++|++++ |.++++ ..++.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~----------------------N~l~~~-~~l~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSD----------------------NEIRKL-DGFPLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCS----------------------SCCCEE-CCCCCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCC----------------------CCCCcc-cccccCCCCCEE
Confidence 445567777777777633 3433 33332 555555555 444443 234556677777
Q ss_pred ecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchh--hhhCCCCCcEEeccCCCCcccchH----hhccCCCcEEEec
Q 047461 205 DLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE--CLGQLSSPITFNLAKTNIERIPES----IIQLFVSGYLLLS 278 (312)
Q Consensus 205 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~----l~~~~~L~~L~l~ 278 (312)
++++|.+.+..+..+..+++|++|++++|.+ +.+|. .+..+++|+.|++++|.++.+|.. +..+++|++|+++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 7777776554334446777788888877765 44554 677788888888888888877764 7788888888888
Q ss_pred CCcCCc
Q 047461 279 YGIVED 284 (312)
Q Consensus 279 ~n~~~~ 284 (312)
+|....
T Consensus 149 ~n~~~~ 154 (176)
T 1a9n_A 149 KVKLKE 154 (176)
T ss_dssp ECCHHH
T ss_pred cCCHHH
Confidence 887644
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.2e-13 Score=108.31 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461 177 NISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA 255 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 255 (312)
+++.|++++|.++.++. .++.+++|++|++++|++.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444444443 23556666666766666555444445666667777776666655555555666677777777
Q ss_pred CCCCcccchH-hhccCCCcEEEecCCcCCc
Q 047461 256 KTNIERIPES-IIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 256 ~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~ 284 (312)
+|.++.+|.. +..+++|++|++++|++.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7776655543 3556677777777776654
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=2.5e-14 Score=136.05 Aligned_cols=139 Identities=22% Similarity=0.242 Sum_probs=93.8
Q ss_pred ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461 146 LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLK 223 (312)
Q Consensus 146 ~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 223 (312)
.+..+..++.|+.|++++|. +..+|... ..+|+.|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 34556677788888888854 34555433 46788888888888888877778888888888887765 6677778888
Q ss_pred CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCC-CcEEEecCCcCCcccc
Q 047461 224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFV-SGYLLLSYGIVEDTLR 287 (312)
Q Consensus 224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~-L~~L~l~~n~~~~~~~ 287 (312)
+|++|++++|.+ +.+|..+..+++|+.|++++|.++ .+|..+..... +..+++++|.+.+..+
T Consensus 294 ~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 294 QLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 888888887765 467777778888888888888887 44555543322 2246677777765443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=1.6e-14 Score=137.45 Aligned_cols=147 Identities=23% Similarity=0.293 Sum_probs=113.9
Q ss_pred CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCC
Q 047461 125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLG 202 (312)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~ 202 (312)
.+..++.|+.|++++|.+ ..+|..+..+++|++|++++|. +..+|... ..+|+.|+|++|.++.+|..++.+++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 677889999999999994 5788878899999999999965 45777543 6899999999999999999999999999
Q ss_pred EEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCC-CcEEeccCCCCc-ccchHhhccCCCcEEEecCC
Q 047461 203 YLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSS-PITFNLAKTNIE-RIPESIIQLFVSGYLLLSYG 280 (312)
Q Consensus 203 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n 280 (312)
+|+|++|.+ +.+|..++.+++|+.|++++|.+.+.+|..+..+.. +..+++++|.++ .+|. .|+.|+++.|
T Consensus 297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred EEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 999999986 478888999999999999999999988887755421 234678889888 5544 4556666666
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=9.2e-14 Score=110.66 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=109.2
Q ss_pred CCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461 178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT 257 (312)
Q Consensus 178 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n 257 (312)
-+.+++++++++.+|..+ .+++++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 467888888888888654 358999999999875 67788999999999999999988877888999999999999999
Q ss_pred CCcccc-hHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 258 NIERIP-ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 258 ~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.++.++ ..+..+++|++|+|++|.+.. .+...+..++.++.++...++|.+.|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeecCC
Confidence 999665 468899999999999999875 34444567788887777888888776
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=2.8e-13 Score=107.76 Aligned_cols=130 Identities=21% Similarity=0.158 Sum_probs=107.3
Q ss_pred cEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHH--HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCC
Q 047461 157 TKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSS--IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS 234 (312)
Q Consensus 157 ~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~--~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 234 (312)
+.+++++ +.++.+|.....+++.|++++|.++.++.. ++.+++|++|++++|++.+..|..++.+++|++|++++|.
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCC-CCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 6788888 455677765556899999999999887753 7888999999999998888888888889999999999988
Q ss_pred CCCcchhhhhCCCCCcEEeccCCCCcc-cchHhhccCCCcEEEecCCcCCcccc
Q 047461 235 NLQRLPECLGQLSSPITFNLAKTNIER-IPESIIQLFVSGYLLLSYGIVEDTLR 287 (312)
Q Consensus 235 ~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~l~~n~~~~~~~ 287 (312)
+.+..+..+..+++|+.|++++|.++. .|..+..+++|++|++++|++...-+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 877777778888999999999999984 46778888999999999998875433
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.5e-15 Score=120.36 Aligned_cols=133 Identities=19% Similarity=0.063 Sum_probs=97.6
Q ss_pred cccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCC
Q 047461 147 PSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSL 225 (312)
Q Consensus 147 ~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 225 (312)
|..+..+++|++|++++|. +..+|... .++|+.|++++|.++.+|..+..+++|++|++++|++.+ +| .+..+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 3367778888888888753 44466333 578888888888888888777777889999999887665 44 57788889
Q ss_pred CeEeccCCCCCCcc-hhhhhCCCCCcEEeccCCCCccc-ch----------HhhccCCCcEEEecCCcCCc
Q 047461 226 GVLSLCGCSNLQRL-PECLGQLSSPITFNLAKTNIERI-PE----------SIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 226 ~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~-~~----------~l~~~~~L~~L~l~~n~~~~ 284 (312)
+.|++++|.+.+.. ...+..+++|+.|++++|.++.. |. .+..+++|+.|+ ++++..
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999888765422 24678889999999999988633 22 367889999886 555543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=4.8e-13 Score=104.88 Aligned_cols=109 Identities=17% Similarity=0.083 Sum_probs=88.5
Q ss_pred CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA 255 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 255 (312)
.+++.|++++|.++.++......++|++|++++|.+.+. ..++.+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 467777777777777654333344999999999987764 568889999999999998765444556899999999999
Q ss_pred CCCCcccch--HhhccCCCcEEEecCCcCCccc
Q 047461 256 KTNIERIPE--SIIQLFVSGYLLLSYGIVEDTL 286 (312)
Q Consensus 256 ~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~ 286 (312)
+|.++.+|. .+..+++|+.|++++|++....
T Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 999998887 7889999999999999987543
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=8.6e-13 Score=102.82 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=53.7
Q ss_pred CCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461 178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT 257 (312)
Q Consensus 178 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n 257 (312)
.+.+++++++++++|..+ .+++++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 344555555555554332 245555555555555544555555555555555555544433444455555555555555
Q ss_pred CCcccch-HhhccCCCcEEEecCCcCC
Q 047461 258 NIERIPE-SIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 258 ~l~~~~~-~l~~~~~L~~L~l~~n~~~ 283 (312)
.++.+|. .+..+++|++|+|++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5554443 3455555555555555543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=9e-13 Score=103.36 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=104.2
Q ss_pred CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
..+.+++.+++++.+|..+ .++|++|++++|++.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4577888888888887543 36899999999998776666778999999999999988766666788999999999999
Q ss_pred CCCcccch-HhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461 257 TNIERIPE-SIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC 311 (312)
Q Consensus 257 n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
|.++.+|. .+..+++|++|++++|.+.+ .+...+..++.++.++...+.|.+.|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccC
Confidence 99997765 46889999999999999875 33344455666666655555554443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.3e-12 Score=102.27 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=47.5
Q ss_pred cEEeccCCCCCCCCCccccCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCC
Q 047461 157 TKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN 235 (312)
Q Consensus 157 ~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 235 (312)
+.+++++ +.++.+|.....+++.|++++|.++++ |..++.+++|++|++++|++.+..+..+..+++|++|++++|.+
T Consensus 15 ~~l~~~~-n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCS-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCC-CCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 4455554 233444433234455555555555544 23344455555555555544443333334455555555555444
Q ss_pred CCcchhhhhCCCCCcEEeccCCCCc
Q 047461 236 LQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 236 ~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
.+-.+..+..+++|+.|++++|++.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ceeCHHHhccccCCCEEEeCCCCcc
Confidence 3333333444555555555555544
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=1.1e-11 Score=107.02 Aligned_cols=256 Identities=14% Similarity=0.108 Sum_probs=145.8
Q ss_pred CCCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCC--CCCccCcCCccEEeCCCCcccchhhhccc----
Q 047461 28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKS--LPSNLSAEKLMLLEVPDSDIKRLWDCVKH---- 101 (312)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---- 101 (312)
+.+++.|.+.+..- .. ........ .++|++|++++|.+.. .+.. .++.+..+.+..+.+. ...+..
T Consensus 24 ~~~l~~L~l~g~i~-~~---~~~~l~~~-l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~~I~--~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN-AE---DFRHLRDE-FPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMANFVP--AYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC-HH---HHHHHHHS-CTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTTEEC--TTTTEEEETT
T ss_pred hCceeEEEEecccc-HH---HHHHHHHh-hccCeEEecCcceeEEecCccc-cccccccccccccccC--HHHhcccccc
Confidence 45788888886421 00 00000000 2679999999988762 2211 2222344444444332 134556
Q ss_pred ----CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCC---CCCCCCccc
Q 047461 102 ----YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS---KLKRLPEIS 174 (312)
Q Consensus 102 ----l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~l~~~p~~~ 174 (312)
+++|+.+.... . +..++. ..|..+++|+.|++..|......+.++....++..+...... ....+....
T Consensus 96 ~~~g~~~L~~l~L~~--~-i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--K-IKNIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp EEEECTTCCC-CBCT--T-CCEECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccccCCCcEEECCc--c-ccchhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 88888655443 1 222322 267889999999999887544444456566666666544311 001111000
Q ss_pred ---c--------------------------CCCCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCC
Q 047461 175 ---S--------------------------GNISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKS 224 (312)
Q Consensus 175 ---~--------------------------~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 224 (312)
. .+++.+.+.++-.. .+......+++|+.+++.+|++...-+.+|..+++
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 1 12222322222111 11111224788999999988776666667888889
Q ss_pred CCeEeccCCCCCCcchhhhhCCCCCc-EEeccCCCCcccc-hHhhccCCCcEEEecCCcCCccccccccCCCCchh
Q 047461 225 LGVLSLCGCSNLQRLPECLGQLSSPI-TFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVR 298 (312)
Q Consensus 225 L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 298 (312)
|+.+++.++ +..--+..|.++.+|+ .+++.. .++.++ .++..|++|+.+++++|.+.. .....+.+++.++
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSK 324 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchh
Confidence 999999875 4433455678888898 999987 677554 578889999999998887754 3333444555554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=6e-14 Score=112.26 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=94.3
Q ss_pred cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461 175 SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL 254 (312)
Q Consensus 175 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 254 (312)
.++|++|++++|.++.+| .++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+ +| .+..+++|+.|++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 479999999999999998 8889999999999999865 677777788999999999987765 55 6888999999999
Q ss_pred cCCCCcccch--HhhccCCCcEEEecCCcCCcc
Q 047461 255 AKTNIERIPE--SIIQLFVSGYLLLSYGIVEDT 285 (312)
Q Consensus 255 ~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~ 285 (312)
++|.++.++. .+..+++|++|++++|++.+.
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 9999997664 788999999999999998665
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=2.6e-11 Score=94.37 Aligned_cols=85 Identities=22% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461 176 GNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL 254 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 254 (312)
.+++.|++++|.++.+ |..++.+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4666666666777766 445778889999999999887766666788999999999998877666667888999999999
Q ss_pred cCCCCc
Q 047461 255 AKTNIE 260 (312)
Q Consensus 255 ~~n~l~ 260 (312)
++|+++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 999887
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=3.5e-11 Score=93.99 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=80.3
Q ss_pred CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
.-+.+++++++++.+|..+. ++|++|++++|++.+..|..++.+++|+.|++++|.+.+-.+..+..+++|+.|++++
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 44678888888888776543 6788888888887777777778888888888888776654445567788888888888
Q ss_pred CCCcccchH-hhccCCCcEEEecCCcCCc
Q 047461 257 TNIERIPES-IIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 257 n~l~~~~~~-l~~~~~L~~L~l~~n~~~~ 284 (312)
|.|+.+|.. +..+++|++|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 888876654 7778888888888887753
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=4.1e-12 Score=111.43 Aligned_cols=155 Identities=17% Similarity=0.066 Sum_probs=99.5
Q ss_pred cCCcEEEcCCCCcCcccc----cccc-CCCcCcEEeccCCCCCCC-CCccc--cCCCCeEEcCCcccccch-----HHH-
Q 047461 130 NKLVTLNLRGSKSLKSLP----SGIF-NLEFLTKLDLSGCSKLKR-LPEIS--SGNISWLFLRGIAIEELP-----SSI- 195 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~----~~l~-~~~~L~~L~l~~~~~l~~-~p~~~--~~~L~~L~l~~~~l~~l~-----~~~- 195 (312)
+.|++|++++|.+..... ..+. ..++|+.|++++|..... ..... ..+++.|++++|.++... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 367888888887543322 2222 236788888888643211 11111 247888888888877432 222
Q ss_pred HhcCCCCEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCcc-----c
Q 047461 196 ERLLRLGYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIER-----I 262 (312)
Q Consensus 196 ~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~-----~ 262 (312)
...++|++|++++|.+.. .++..+...++|++|++++|.+.+. ++..+...++|+.|++++|.|+. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 235678888888887644 2444556777888888888876542 35566677788888888888872 3
Q ss_pred chHhhccCCCcEEEecCCcCCc
Q 047461 263 PESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 263 ~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+..+...++|++|+|++|.+.+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 3445567888888888888754
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=7.7e-11 Score=102.39 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=50.0
Q ss_pred EcCCc-ccccchHHHHhcCCCCEEecCC-CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461 182 FLRGI-AIEELPSSIERLLRLGYLDLSD-CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI 259 (312)
Q Consensus 182 ~l~~~-~l~~l~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l 259 (312)
+.+++ +++.+|. ++.+.+|++|+|++ |.+.+..+..++.+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.|
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4445555 44455555555553 444444444455555555555555554444444555555555555555555
Q ss_pred cccchHhhccCCCcEEEecCCcCC
Q 047461 260 ERIPESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 260 ~~~~~~l~~~~~L~~L~l~~n~~~ 283 (312)
+.+|..+.....|+.|+|.+|++.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCcc
Confidence 544433222222555555555543
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.06 E-value=6.2e-09 Score=92.07 Aligned_cols=212 Identities=11% Similarity=0.068 Sum_probs=117.3
Q ss_pred CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchh-hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461 58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL 135 (312)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 135 (312)
.+|+.+.+..+ +..++... .-..|+.+.+.. .+..+. ..+..|++|+.+..... -+..++. ..+. +++|+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n--~l~~I~~-~aF~-~~~L~~l 208 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT--KITKLPA-STFV-YAGIEEV 208 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS--CCSEECT-TTTT-TCCCSEE
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCC--cceEech-hhEe-ecccCEE
Confidence 45666665543 44444322 223566666654 444444 34556666663332210 0222222 0222 4567777
Q ss_pred EcCCCCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccch-HHHHhcCCCCEEecCCCCC
Q 047461 136 NLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELP-SSIERLLRLGYLDLSDCKR 211 (312)
Q Consensus 136 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~~ 211 (312)
.+..+ ...+ ..++.++++|+.+++..+ +..++... ..+|+.+.+ .+.++.++ ..+.++.+|+.+++.++..
T Consensus 209 ~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 209 LLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred EeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccc
Confidence 76643 2333 334556667777776652 22222111 246666666 33455554 3466777888888876554
Q ss_pred C-----CcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCC
Q 047461 212 L-----KSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVE 283 (312)
Q Consensus 212 ~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~ 283 (312)
. ..-+.+|..+++|+.+.+.+ .+..--...|.++.+|+.+.+..+ ++.+. .++..+ +|+.+++.+|...
T Consensus 284 ~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 284 NDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 3 23345677788888888874 333333456777888888888654 66443 456777 8888888888654
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=7.8e-10 Score=95.34 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=68.3
Q ss_pred cCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC-eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461 183 LRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG-VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 183 l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
+.+|.++.++. .+.++.+|+.+++.+| +...-+.+|.++++|+ .+.+.+ .+..--+..|.++++|+.++++.|.++
T Consensus 233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 33344444543 3667788899998876 5555556788888898 999977 444444577889999999999999998
Q ss_pred ccch-HhhccCCCcEEEe
Q 047461 261 RIPE-SIIQLFVSGYLLL 277 (312)
Q Consensus 261 ~~~~-~l~~~~~L~~L~l 277 (312)
.++. ++..+++|+.++.
T Consensus 311 ~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTCTTCCCCEEEC
T ss_pred ccchhhhcCCcchhhhcc
Confidence 6664 6788999988763
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=5.5e-11 Score=104.21 Aligned_cols=154 Identities=15% Similarity=0.021 Sum_probs=99.7
Q ss_pred cCCcEEEcCCCCcCccccccc-cCCCcCcEEeccCCCCCCCC-Ccc------ccCCCCeEEcCCccccc-----chHHHH
Q 047461 130 NKLVTLNLRGSKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRL-PEI------SSGNISWLFLRGIAIEE-----LPSSIE 196 (312)
Q Consensus 130 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~-p~~------~~~~L~~L~l~~~~l~~-----l~~~~~ 196 (312)
++|++|++++|.+.......+ ..+++|+.|++++|.....- ... ..+.|+.|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 467888888877543322222 23567788888886422110 000 12578899999998874 455567
Q ss_pred hcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCcc-cchHhh
Q 047461 197 RLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIER-IPESII 267 (312)
Q Consensus 197 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~-~~~~l~ 267 (312)
..++|++|++++|.+.+. ++..+...++|++|++++|.+.+. ++..+...++|+.|++++|.|+. -...+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 788999999999987542 355667788999999999988653 45566677999999999999983 223343
Q ss_pred cc---C--CCcEEE--ecCCcCC
Q 047461 268 QL---F--VSGYLL--LSYGIVE 283 (312)
Q Consensus 268 ~~---~--~L~~L~--l~~n~~~ 283 (312)
.. . .++.+. +..+.+.
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 32 1 166666 5666554
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=1.2e-08 Score=90.11 Aligned_cols=239 Identities=10% Similarity=0.091 Sum_probs=160.8
Q ss_pred cchhcCCCCCcEEEeeccccccccccccccCC-CCCCCCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchhhh
Q 047461 22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQ-DPGFAEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLWDC 98 (312)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~ 98 (312)
..+|..+ +|+.+.+..+. ..... .+...+|+.+.+.. .+..++... .+++|+.++++.|.+..++..
T Consensus 129 ~~aF~~~-~L~~i~l~~~i--------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEGL--------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TTTTTTC-CCSEEECCTTC--------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred HhhcccC-CccEEEeCCCc--------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 3567664 68888887632 11211 22226799999876 566666433 789999999999999988865
Q ss_pred cccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccc-cccCCCcCcEEeccCCCCCCCCCccc---
Q 047461 99 VKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLPEIS--- 174 (312)
Q Consensus 99 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~l~~~p~~~--- 174 (312)
...+.+|+.+..... ...+.. ..|..+++|+.+.+..+ ...++. ++.+ .+|+.+.+..+ +..++...
T Consensus 199 aF~~~~L~~l~lp~~---l~~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~ 269 (401)
T 4fdw_A 199 TFVYAGIEEVLLPVT---LKEIGS-QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYY 269 (401)
T ss_dssp TTTTCCCSEEECCTT---CCEECT-TTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTT
T ss_pred hEeecccCEEEeCCc---hheehh-hHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhC
Confidence 444678875544321 222222 27788999999999874 344444 4444 78999998552 33333222
Q ss_pred cCCCCeEEcCCcccc-----cch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCC
Q 047461 175 SGNISWLFLRGIAIE-----ELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSS 248 (312)
Q Consensus 175 ~~~L~~L~l~~~~l~-----~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 248 (312)
+.+|+.+.+.++.+. .++ ..+.++++|+.+++.. .+...-..+|.++++|+.+.+.. ++..--...|.++ +
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-G 346 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-C
T ss_pred CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-C
Confidence 468999999887665 344 4577899999999984 45555556788889999999965 3443345567788 9
Q ss_pred CcEEeccCCCCcccch-HhhccC-CCcEEEecCCcC
Q 047461 249 PITFNLAKTNIERIPE-SIIQLF-VSGYLLLSYGIV 282 (312)
Q Consensus 249 L~~L~l~~n~l~~~~~-~l~~~~-~L~~L~l~~n~~ 282 (312)
|+.+++.+|.+..++. .+..++ .++.|.+-.+.+
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 9999999998875543 445553 566777666543
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.6e-09 Score=94.25 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=80.5
Q ss_pred ccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccc-hHHHH--hcCCCCEEecCCC--CCCC-----cCch
Q 047461 148 SGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL-PSSIE--RLLRLGYLDLSDC--KRLK-----SLPS 217 (312)
Q Consensus 148 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l-~~~~~--~l~~L~~L~l~~n--~~~~-----~~~~ 217 (312)
..+..+|+|+.|.+++|..+ .++....++|+.|++..+.++.- ...+. .+++|++|+|+.+ ...+ .+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 33445677777777765222 22322346777887777766531 12232 5778888887531 1111 1111
Q ss_pred hh--hcCCCCCeEeccCCCCCCcchhhhh---CCCCCcEEeccCCCCcc-----cchHhhccCCCcEEEecCCcCCc
Q 047461 218 SL--YRLKSLGVLSLCGCSNLQRLPECLG---QLSSPITFNLAKTNIER-----IPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 218 ~l--~~l~~L~~L~l~~~~~~~~~p~~~~---~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
.+ ..+++|++|++++|.+.+..+..+. .+++|+.|+++.|.++. ++..+..+++|+.|++++|.+.+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 22 2467888888888776554433332 46778888888888773 33344567888888888887654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.89 E-value=5.7e-09 Score=90.52 Aligned_cols=100 Identities=22% Similarity=0.134 Sum_probs=49.3
Q ss_pred cEEEcCCC-CcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecC
Q 047461 133 VTLNLRGS-KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLS 207 (312)
Q Consensus 133 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~ 207 (312)
..++.+++ . +..+|. +..+++|+.|++++++.+..++... ..+|+.|+|++|.++.++. .++.+++|++|+|+
T Consensus 11 ~~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34566665 4 555666 6667777777776533344333211 3445555555555554432 33445555555555
Q ss_pred CCCCCCcCchhhhcCCCCCeEeccCCCC
Q 047461 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSN 235 (312)
Q Consensus 208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 235 (312)
+|++.+..+..+..++ |+.|++.+|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 5544433222222222 55555554443
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=3.8e-08 Score=77.37 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=74.8
Q ss_pred CCCeEEcCCc-ccc-----cchHHHHhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCc----chhh
Q 047461 177 NISWLFLRGI-AIE-----ELPSSIERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQR----LPEC 242 (312)
Q Consensus 177 ~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~ 242 (312)
.|++|++++| .+. .+...+...++|++|+|++|.+... +...+...++|++|++++|.+... +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4555555555 444 2344555667888888888876542 344555667888888888877653 4566
Q ss_pred hhCCCCCcEEec--cCCCCcc-----cchHhhccCCCcEEEecCCcCCc
Q 047461 243 LGQLSSPITFNL--AKTNIER-----IPESIIQLFVSGYLLLSYGIVED 284 (312)
Q Consensus 243 ~~~l~~L~~L~l--~~n~l~~-----~~~~l~~~~~L~~L~l~~n~~~~ 284 (312)
+...++|++|++ ++|.++. +...+...++|++|++++|.+..
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 677788999999 7788872 44556677899999999997753
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=6.1e-08 Score=84.31 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=86.0
Q ss_pred CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCC-CCcc---ccCCCCeEEcCC--c------ccccchHH
Q 047461 127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR-LPEI---SSGNISWLFLRG--I------AIEELPSS 194 (312)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~-~p~~---~~~~L~~L~l~~--~------~l~~l~~~ 194 (312)
..+|+|+.|.++++.. ..+++ + ..++|++|++..|..... +... ..++|+.|+|+. + .+..+...
T Consensus 169 ~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3455666666665521 12232 2 256666666665432110 0000 124666666531 1 12222222
Q ss_pred H--HhcCCCCEEecCCCCCCCcCchhhh---cCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCc-ccch
Q 047461 195 I--ERLLRLGYLDLSDCKRLKSLPSSLY---RLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIE-RIPE 264 (312)
Q Consensus 195 ~--~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~-~~~~ 264 (312)
+ ..+++|++|++.+|.+.+..+..+. .+++|++|+++.|.+.+. ++..+..+++|+.|+++.|.++ ..-.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 2478999999998887654333333 477899999998876653 4444456799999999999887 3333
Q ss_pred HhhccCCCcEEEecCCc
Q 047461 265 SIIQLFVSGYLLLSYGI 281 (312)
Q Consensus 265 ~l~~~~~L~~L~l~~n~ 281 (312)
.+.+.- ...++++.++
T Consensus 326 ~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC-CSEEECCSBC
T ss_pred HHHHHc-CCEEEecCCc
Confidence 343311 4568888876
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=1.5e-05 Score=70.11 Aligned_cols=83 Identities=12% Similarity=-0.065 Sum_probs=57.4
Q ss_pred HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCc
Q 047461 195 IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSG 273 (312)
Q Consensus 195 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~ 273 (312)
+..+.+|+.+.+..+ +...-..++.++++|+.+++.. .+..--...|.++.+|+.+.+..+ ++.+. .++..|++|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 456778888887653 3333345677788899888864 232222456778889999988766 66554 4678889999
Q ss_pred EEEecCC
Q 047461 274 YLLLSYG 280 (312)
Q Consensus 274 ~L~l~~n 280 (312)
.+++..+
T Consensus 370 ~i~lp~~ 376 (394)
T 4fs7_A 370 KVELPKR 376 (394)
T ss_dssp EEEEEGG
T ss_pred EEEECCC
Confidence 8888765
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=1.7e-07 Score=73.59 Aligned_cols=113 Identities=15% Similarity=0.080 Sum_probs=74.8
Q ss_pred cCCCcCCcEEEcCCC-CcCcc----ccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccc-----cchHHH
Q 047461 126 MPRLNKLVTLNLRGS-KSLKS----LPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIE-----ELPSSI 195 (312)
Q Consensus 126 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~-----~l~~~~ 195 (312)
+...+.|++|++++| .+... +...+...++|++|+++ +|.+. .+...+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls----------------------~n~i~~~g~~~l~~~L 89 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV----------------------GTRSNDPVAFALAEML 89 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT----------------------TSCCCHHHHHHHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc----------------------CCCCChHHHHHHHHHH
Confidence 344567777777777 54322 22223334445555544 44444 244556
Q ss_pred HhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEec--cCCCCCCc----chhhhhCCCCCcEEeccCCCCc
Q 047461 196 ERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSL--CGCSNLQR----LPECLGQLSSPITFNLAKTNIE 260 (312)
Q Consensus 196 ~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l--~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 260 (312)
...++|++|+|++|.+... +...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6678899999999887653 4556677788999999 77777653 4556667789999999999886
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=1.3e-07 Score=72.93 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=60.4
Q ss_pred CCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCC----CCCcEEeccCCC-Cc-ccchHhhccCC
Q 047461 199 LRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQL----SSPITFNLAKTN-IE-RIPESIIQLFV 271 (312)
Q Consensus 199 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l----~~L~~L~l~~n~-l~-~~~~~l~~~~~ 271 (312)
..|++||+++|.++..-...+..+++|++|++++|. +++..-..+..+ ++|++|++++|. || .--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357788888877665555556778888888888884 445444555553 468888888875 77 22245677889
Q ss_pred CcEEEecCCcCCc
Q 047461 272 SGYLLLSYGIVED 284 (312)
Q Consensus 272 L~~L~l~~n~~~~ 284 (312)
|++|++++|+..+
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999986544
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.41 E-value=4.2e-06 Score=73.77 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=85.2
Q ss_pred cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchH-HHHhcCCCCEE
Q 047461 126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPS-SIERLLRLGYL 204 (312)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L 204 (312)
+..+..++.+.+..+. .......+.....++.+..... .+....-....+|+.+.+..+ ++.++. .+.++.+|+.+
T Consensus 249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~-~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSV-IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSS-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCc-ceeeccccccccccceeccCce-eeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 3344555555554432 2222223334455555544331 111111111357777777653 555543 46778999999
Q ss_pred ecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEE
Q 047461 205 DLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYL 275 (312)
Q Consensus 205 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L 275 (312)
++..+ +...-..+|.++++|+.+.+..+ +..--...|.++.+|+.+++..+ ++.+...+..|++|+.+
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 99653 44444567888999999999764 43333457889999999999754 45455567777777754
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.29 E-value=1.7e-06 Score=71.57 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=52.0
Q ss_pred HhcCCCCEEecCCCCCCC--cCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEeccCCCCc-ccc-------h
Q 047461 196 ERLLRLGYLDLSDCKRLK--SLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLAKTNIE-RIP-------E 264 (312)
Q Consensus 196 ~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~-~~~-------~ 264 (312)
..+++|+.|+|++|++.+ .++..+..+++|+.|+|++|.+.+. -...+..+ +|+.|++++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 457788888888887766 4455566777888888877766543 11222233 7788888888776 333 2
Q ss_pred HhhccCCCcEEE
Q 047461 265 SIIQLFVSGYLL 276 (312)
Q Consensus 265 ~l~~~~~L~~L~ 276 (312)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777665
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.14 E-value=0.00016 Score=63.56 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=55.7
Q ss_pred HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCc
Q 047461 195 IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSG 273 (312)
Q Consensus 195 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~ 273 (312)
+.++.+|+.+.+.. .+...-..+|.++++|+.+.+..+ +..--...|.++.+|+.+.+..+ ++.+. .++..|.+|+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 44566677777653 333333346677788888888652 32223456778888888888654 66554 4678888999
Q ss_pred EEEecCCcC
Q 047461 274 YLLLSYGIV 282 (312)
Q Consensus 274 ~L~l~~n~~ 282 (312)
.+++.++..
T Consensus 361 ~i~~~~~~~ 369 (394)
T 4gt6_A 361 NIEYSGSRS 369 (394)
T ss_dssp EEEESSCHH
T ss_pred EEEECCcee
Confidence 888887743
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=1.6e-06 Score=71.75 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=55.1
Q ss_pred hcCCCCCeEeccCCCCCC--cchhhhhCCCCCcEEeccCCCCcccchHhhccC--CCcEEEecCCcCCcc
Q 047461 220 YRLKSLGVLSLCGCSNLQ--RLPECLGQLSSPITFNLAKTNIERIPESIIQLF--VSGYLLLSYGIVEDT 285 (312)
Q Consensus 220 ~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~--~L~~L~l~~n~~~~~ 285 (312)
..+++|+.|++++|.+.+ .+|..+..+++|+.|+|++|.|+.+ ..+..+. +|++|+|++|++.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccc
Confidence 468899999999999877 6778888999999999999999966 3345455 999999999999863
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=0.00024 Score=62.46 Aligned_cols=125 Identities=10% Similarity=0.083 Sum_probs=74.3
Q ss_pred ccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCC
Q 047461 150 IFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSL 225 (312)
Q Consensus 150 l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 225 (312)
+...+.|+.+.+.... ..+.... ...|+.+.+. +.++.++. .+.++.+|+.+++..+ +...-..+|.++++|
T Consensus 261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 4445566666654421 1111111 3567777775 34555553 4677899999999753 444445678889999
Q ss_pred CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461 226 GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI 281 (312)
Q Consensus 226 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~ 281 (312)
+.+.+.. .+..--...|.++.+|+.+++.++.... ..+..+.+|+.+.+..+.
T Consensus 337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 9999965 3433335678899999999998865331 345667888888776654
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=1.3e-05 Score=61.79 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=17.3
Q ss_pred CCCeEeccCCC-CCCcchhhhhCCCCCcEEeccCCC
Q 047461 224 SLGVLSLCGCS-NLQRLPECLGQLSSPITFNLAKTN 258 (312)
Q Consensus 224 ~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~ 258 (312)
+|++|++++|. +++.--..+..+++|+.|++++|.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 45555555553 333333344455555555555553
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=0.0017 Score=56.58 Aligned_cols=102 Identities=8% Similarity=-0.030 Sum_probs=59.0
Q ss_pred CCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461 176 GNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL 254 (312)
Q Consensus 176 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 254 (312)
..|+.+.+..+ ++.+.. .+.++.+|+.+.+.. .+...-...+..+++|+.+.+.++.+..--...|.++.+|+.+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 34555555443 333332 344566677777654 233333345667777888877654443333456677778888887
Q ss_pred cCCCCcccc-hHhhccCCCcEEEecCC
Q 047461 255 AKTNIERIP-ESIIQLFVSGYLLLSYG 280 (312)
Q Consensus 255 ~~n~l~~~~-~~l~~~~~L~~L~l~~n 280 (312)
..+ ++.+. .++..|.+|+.+.+..+
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 643 55444 35677777877776543
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.74 E-value=0.0026 Score=55.37 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=41.1
Q ss_pred cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCC-CCCCCCccEEeeCCCCCCCCCCcc-CcC
Q 047461 3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQ-DPGFAEVKYLHWHGYPLKSLPSNL-SAE 80 (312)
Q Consensus 3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~l~ 80 (312)
++|+.+.+.- .. -..+..+|.++.+|+.+.+.++. ..... .+...+|+.+.+-. .+..++... ...
T Consensus 46 ~~i~~v~ip~-~v--t~Ig~~aF~~C~~L~~I~lp~~v--------~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~ 113 (379)
T 4h09_A 46 DRISEVRVNS-GI--TSIGEANFNSCYNMTKVTVASTV--------TSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGT 113 (379)
T ss_dssp GGCSEEEECT-TE--EEECTTTTTTCTTCCEEEECTTC--------CEECTTTTTTCCCCEEEECT-TCCEECTTTTTTC
T ss_pred cCCEEEEeCC-Cc--cChHHHHhhCCCCCCEEEeCCcc--------eEechhhhcCCCCceEECCc-eeeEeccceeccC
Confidence 4566666642 12 22345789999999999997632 11111 12224566665543 233443322 334
Q ss_pred CccEEeCCCC
Q 047461 81 KLMLLEVPDS 90 (312)
Q Consensus 81 ~L~~L~l~~~ 90 (312)
+|+.+.+..+
T Consensus 114 ~L~~i~lp~~ 123 (379)
T 4h09_A 114 DLDDFEFPGA 123 (379)
T ss_dssp CCSEEECCTT
T ss_pred CcccccCCCc
Confidence 6777777653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=0.00028 Score=55.35 Aligned_cols=106 Identities=11% Similarity=0.027 Sum_probs=67.0
Q ss_pred CCCeEEcCCc-cccc-----chHHHHhcCCCCEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCc----chhh
Q 047461 177 NISWLFLRGI-AIEE-----LPSSIERLLRLGYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPEC 242 (312)
Q Consensus 177 ~L~~L~l~~~-~l~~-----l~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~ 242 (312)
.|+.|+++++ .+.. +...+..-+.|+.|+|++|.+.. .+...+..-+.|++|+|+.|.+... +.+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4555555543 4442 33445556678888888877654 3444555667788888888777643 3445
Q ss_pred hhCCCCCcEEeccCC---CCc-----ccchHhhccCCCcEEEecCCcC
Q 047461 243 LGQLSSPITFNLAKT---NIE-----RIPESIIQLFVSGYLLLSYGIV 282 (312)
Q Consensus 243 ~~~l~~L~~L~l~~n---~l~-----~~~~~l~~~~~L~~L~l~~n~~ 282 (312)
+..-+.|+.|++++| .+. .+.+.+..-+.|+.|+++.|..
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 555677888888765 333 2334556678888888887754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.93 E-value=0.0019 Score=50.62 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=66.6
Q ss_pred HHHhcCCCCEEecCCC-CCCC----cCchhhhcCCCCCeEeccCCCCCC----cchhhhhCCCCCcEEeccCCCCc----
Q 047461 194 SIERLLRLGYLDLSDC-KRLK----SLPSSLYRLKSLGVLSLCGCSNLQ----RLPECLGQLSSPITFNLAKTNIE---- 260 (312)
Q Consensus 194 ~~~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~l~---- 260 (312)
.+..-+.|+.|+|+++ .+.. .+...+..-+.|+.|+|++|.+.+ .+.+.+..-+.|+.|+|++|.|+
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445678999999986 5433 255667777899999999998764 45666667789999999999998
Q ss_pred -ccchHhhccCCCcEEEecCC
Q 047461 261 -RIPESIIQLFVSGYLLLSYG 280 (312)
Q Consensus 261 -~~~~~l~~~~~L~~L~l~~n 280 (312)
.+.+.+..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 23345566678999999876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.48 E-value=0.018 Score=41.81 Aligned_cols=33 Identities=21% Similarity=0.059 Sum_probs=13.1
Q ss_pred CCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461 201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC 233 (312)
Q Consensus 201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 233 (312)
|++|+|++|++...-+..+..+++|+.|+|.+|
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 444444444433322233333444444444433
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.055 Score=39.18 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCCccccCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCC
Q 047461 169 RLPEISSGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKR 211 (312)
Q Consensus 169 ~~p~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~ 211 (312)
.+|.....+++.|+|++|.++.++.. +..+++|+.|+|++|..
T Consensus 24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44433335677777777777777653 56778888888888753
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.66 E-value=90 Score=20.72 Aligned_cols=38 Identities=3% Similarity=-0.150 Sum_probs=17.3
Q ss_pred hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461 218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK 256 (312)
Q Consensus 218 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 256 (312)
.|.++++|+.+.+-. .+..--...|.++.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 444555555555543 22222223344555555555543
Done!