BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>047464
MLTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSIT
SYPMAFESGDIAAAFLVFPRGSPLALDISEAILK

High Scoring Gene Products

Symbol, full name Information P value
GLR2.8
AT2G29110 		protein from Arabidopsis thaliana 3.1e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  047464
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2066086 - symbol:GLR2.8 "glutamate receptor 2....    79  3.1e-05   2


>TAIR|locus:2066086 [details] [associations]
            symbol:GLR2.8 "glutamate receptor 2.8" species:3702
            "Arabidopsis thaliana" [GO:0004970 "ionotropic glutamate receptor
            activity" evidence=IEA] [GO:0005215 "transporter activity"
            evidence=IEA] [GO:0005217 "intracellular ligand-gated ion channel
            activity" evidence=ISS] [GO:0005234 "extracellular-glutamate-gated
            ion channel activity" evidence=IEA] [GO:0006810 "transport"
            evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006874
            "cellular calcium ion homeostasis" evidence=NAS] [GO:0009416
            "response to light stimulus" evidence=NAS] [GO:0030003 "cellular
            cation homeostasis" evidence=RCA] InterPro:IPR001320
            InterPro:IPR001638 Pfam:PF00060 Pfam:PF00497 SMART:SM00079
            Pfam:PF01094 GO:GO:0016021 GO:GO:0005886 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0005262 GO:GO:0019722 GO:GO:0035235
            GO:GO:0030288 EMBL:AC005315 InterPro:IPR001828 GO:GO:0071230
            GO:GO:0005234 HOGENOM:HOG000239558 KO:K05387 GO:GO:0008066
            GO:GO:0004970 InterPro:IPR017103 PIRSF:PIRSF037090 eggNOG:NOG263961
            ProtClustDB:CLSN2683703 EMBL:AJ311495 IPI:IPI00537052 PIR:T02741
            RefSeq:NP_180475.2 UniGene:At.13039 ProteinModelPortal:Q9C5V5
            EnsemblPlants:AT2G29110.1 GeneID:817459 KEGG:ath:AT2G29110
            TAIR:At2g29110 InParanoid:Q9C5V5 OMA:DSEDSIW PhylomeDB:Q9C5V5
            Genevestigator:Q9C5V5 GermOnline:AT2G29110 Uniprot:Q9C5V5
        Length = 947

 Score = 79 (32.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query:     2 LTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLI----NVLNFKP-GSNKKINAKNGY 56
             LTV R QP+ +++K L +    VG    +F+  +LI    NV   KP GS+++ +A    
Sbjct:   664 LTVQRFQPAAINVKDLIKNGDYVGYQHGAFVKDFLIKEGFNVSKLKPFGSSEECHALLSN 723

Query:    57 NSITS 61
              SI++
Sbjct:   724 GSISA 728

 Score = 56 (24.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query:    73 AAF-LVFPRGSPLALDISEAIL 93
             A F   FPR SPL  D+S+AIL
Sbjct:   757 AGFGFAFPRNSPLTGDVSKAIL 778


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.49    29
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  457 (49 KB)
  Total size of DFA:  83 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.11u 0.14s 10.25t   Elapsed:  00:00:01
  Total cpu time:  10.11u 0.14s 10.25t   Elapsed:  00:00:01
  Start:  Sat May 11 09:04:56 2013   End:  Sat May 11 09:04:57 2013

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