BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047464
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2
Length = 947
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 2 LTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLI----NVLNFKP-GSNKKINAKNGY 56
LTV R QP+ +++K L + VG +F+ +LI NV KP GS+++ +A
Sbjct: 664 LTVQRFQPAAINVKDLIKNGDYVGYQHGAFVKDFLIKEGFNVSKLKPFGSSEECHALLSN 723
Query: 57 NSITS------------------YPMAFESGDIAAAFLVFPRGSPLALDISEAIL 93
SI++ Y + + A FPR SPL D+S+AIL
Sbjct: 724 GSISAAFDEVAYLRAILSQYCSKYAIVEPTFKTAGFGFAFPRNSPLTGDVSKAIL 778
>sp|Q84W41|GLR36_ARATH Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1
Length = 903
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 27/121 (22%)
Query: 1 MLTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFK---------PGSNKKI- 50
+LTV +L I+TLQ + +G SF+ YLI+ LN P K
Sbjct: 662 ILTVHQLSSPIKGIETLQTNHDPIGYPQGSFVRDYLIHELNIHVSRLVPLRSPEEYDKAL 721
Query: 51 ---NAKNGYNSIT---SYPMAF-----ESGDIAAAF------LVFPRGSPLALDISEAIL 93
K G ++ +Y F E G + F FPR SPLA+D+S AIL
Sbjct: 722 RDGPGKGGVAAVVDERAYIELFLSNRCEFGIVGQEFTKNGWGFAFPRNSPLAVDVSAAIL 781
Query: 94 K 94
+
Sbjct: 782 Q 782
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1
Length = 920
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 47/122 (38%), Gaps = 29/122 (23%)
Query: 1 MLTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNK------------ 48
+LT +L P+ + +L R VG SFI+ L N F S
Sbjct: 666 LLTSQQLNPTITSMSSLLHRGETVGYQRTSFILGKL-NETGFPQSSLVPFDTAEECDELL 724
Query: 49 KINAKNG----------YNSI------TSYPMAFESGDIAAAFLVFPRGSPLALDISEAI 92
K KNG Y + +Y M E ++ VFP GSPL D+S AI
Sbjct: 725 KKGPKNGGVAAAFLGTPYVRLFLGQYCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAI 784
Query: 93 LK 94
LK
Sbjct: 785 LK 786
>sp|Q01521|RPOP_PODAS Probable DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 948
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 2 LTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNK 48
L LQ T+DI+ +++ N N++I + L+N +N KP + K
Sbjct: 65 LITYDLQDHTIDIEEMKKENLEKSFKSNTYIFKCLLNTINNKPINEK 111
>sp|Q9SW97|GLR35_ARATH Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2
Length = 953
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 32/124 (25%)
Query: 1 MLTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSIT 60
+LTV +L + TL N +G +F ++L+N LN P ++ I K+ ++
Sbjct: 692 ILTVQQLTSRIEGMDTLIASNEPIGVQDGTFAWKFLVNELNIAP--SRIIPLKDEEEYLS 749
Query: 61 SYPMAFESGDIAAAF------------------------------LVFPRGSPLALDISE 90
+ G +AA F R SPLA+D+S
Sbjct: 750 ALQRGPRGGGVAAIVDELPYIKALLSNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMST 809
Query: 91 AILK 94
AIL+
Sbjct: 810 AILQ 813
>sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1
Length = 895
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 27/121 (22%)
Query: 1 MLTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYL-------INVLNFKPGSN------ 47
+LT +L P+ + +L + VG SFI+ L +++ F
Sbjct: 666 LLTSQKLNPTITSMSSLLEKGETVGYQRTSFILGKLKERGFPQSSLVPFDTAEECDELLS 725
Query: 48 ---KKINAKNGYNSI-----------TSYPMAFESGDIAAAFLVFPRGSPLALDISEAIL 93
KK + I +Y M E ++ VFP GSPL D+S AIL
Sbjct: 726 KGPKKGGVSGAFLEIPYLRLFLGQFCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAIL 785
Query: 94 K 94
K
Sbjct: 786 K 786
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
Length = 952
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 25/117 (21%)
Query: 1 MLTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNF-----KP-GSNKKINAKN 54
TV LQP+ + K L + N +G +F+ R L+ F KP GS + +
Sbjct: 668 FFTVKLLQPTVTNWKDLIKFNKNIGYQRGTFV-RELLKSQGFDESQLKPFGSAVECDELF 726
Query: 55 GYNSITS------------------YPMAFESGDIAAAFLVFPRGSPLALDISEAIL 93
+IT+ Y M S A VFP+ SPL D+S AIL
Sbjct: 727 SNGTITASFDEVAYIKVILSQNSSKYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAIL 783
>sp|Q8GXJ4|GLR34_ARATH Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2
Length = 959
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 32/124 (25%)
Query: 1 MLTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSIT 60
+LT+ +L I +L N +G +F YLIN LN P ++ + K+ ++
Sbjct: 699 ILTIRQLTSRIEGIDSLVTSNEPIGVQDGTFARNYLINELNILP--SRIVPLKDEEQYLS 756
Query: 61 SYPMAFESGDIAAAF------------------------------LVFPRGSPLALDISE 90
+ +G +AA F R SPLA+D+S
Sbjct: 757 ALQRGPNAGGVAAIVDELPYIEVLLTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMST 816
Query: 91 AILK 94
AIL+
Sbjct: 817 AILQ 820
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2
Length = 896
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 62 YPMAFESGDIAAAFLVFPRGSPLALDISEAILK 94
Y M D+ VFP GSPL D+S AILK
Sbjct: 739 YKMVEVPFDVDGFGFVFPIGSPLVADVSRAILK 771
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1
Length = 940
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 45/122 (36%), Gaps = 34/122 (27%)
Query: 2 LTVSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITS 61
LTV LQP+ ++ L + VG G +F+ L+ L F K ++ + + S
Sbjct: 653 LTVQSLQPTVTNVNDLIKNRDCVGYQGGAFVKDILLG-LGFHEDQLKPFDSAKDADDLLS 711
Query: 62 YPMAFESGDIAAAF------------------------------LVFPRGSPLALDISEA 91
+S IAAAF FP+ SPL + S A
Sbjct: 712 ---KGKSKGIAAAFDEVAYLKAILSQSCSKYVMVEPTFKTGGFGFAFPKNSPLTGEFSRA 768
Query: 92 IL 93
IL
Sbjct: 769 IL 770
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2
Length = 901
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 76 LVFPRGSPLALDISEAILK 94
VFP GSPL DIS AILK
Sbjct: 761 FVFPIGSPLVADISRAILK 779
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,692,172
Number of Sequences: 539616
Number of extensions: 1105912
Number of successful extensions: 2013
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1997
Number of HSP's gapped (non-prelim): 19
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)