Query 047464
Match_columns 94
No_of_seqs 113 out of 350
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 19:55:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dz1_A DALS D-alanine transpor 99.0 8.5E-10 2.9E-14 77.5 5.8 77 9-93 127-237 (259)
2 4h5g_A Amino acid ABC superfam 99.0 1.3E-09 4.4E-14 76.2 6.6 75 9-93 113-220 (243)
3 4f3p_A Glutamine-binding perip 98.9 2.1E-09 7E-14 74.6 6.9 75 9-93 120-225 (249)
4 1ii5_A SLR1257 protein; membra 98.9 3E-09 1E-13 71.9 7.5 72 10-93 107-209 (233)
5 3k4u_A Binding component of AB 98.9 3.6E-09 1.2E-13 73.0 6.7 77 9-93 103-211 (245)
6 2pyy_A Ionotropic glutamate re 98.9 5.8E-09 2E-13 70.1 7.3 73 9-93 102-205 (228)
7 1yae_A Glutamate receptor, ion 98.9 1.6E-09 5.5E-14 78.6 4.5 83 3-93 147-270 (312)
8 3mpk_A Virulence sensor protei 98.9 4.4E-09 1.5E-13 74.3 6.4 76 9-94 129-237 (267)
9 3del_B Arginine binding protei 98.8 7.9E-09 2.7E-13 70.8 6.5 74 9-93 108-215 (242)
10 4gvo_A LMO2349 protein; struct 98.8 5.3E-09 1.8E-13 73.1 5.3 82 4-93 103-218 (243)
11 2q88_A EHUB, putative ABC tran 98.8 7.6E-09 2.6E-13 71.6 5.6 77 10-93 112-223 (257)
12 3h7m_A Sensor protein; histidi 98.8 1E-08 3.6E-13 69.3 6.0 74 10-93 108-213 (234)
13 3kg2_A Glutamate receptor 2; I 98.8 4.8E-09 1.6E-13 84.7 4.3 93 1-94 614-743 (823)
14 4i62_A Amino acid ABC transpor 98.8 1.7E-08 5.9E-13 69.7 6.5 75 9-93 140-247 (269)
15 3hv1_A Polar amino acid ABC up 98.7 1.2E-08 4E-13 71.4 5.6 75 10-93 118-231 (268)
16 4eq9_A ABC transporter substra 98.7 2.3E-08 8E-13 68.2 6.9 78 8-93 104-218 (246)
17 3kbr_A Cyclohexadienyl dehydra 98.7 1.6E-08 5.4E-13 69.1 5.8 76 10-93 114-220 (239)
18 3qax_A Probable ABC transporte 98.7 2.1E-08 7.3E-13 69.2 6.3 74 9-93 129-236 (268)
19 3tql_A Arginine-binding protei 98.7 1.5E-08 5E-13 68.1 4.1 74 11-93 101-211 (227)
20 1wdn_A GLNBP, glutamine bindin 98.7 4.8E-08 1.6E-12 65.5 6.6 74 10-93 100-205 (226)
21 2pvu_A ARTJ; basic amino acid 98.7 9.9E-08 3.4E-12 67.1 8.2 76 9-93 137-245 (272)
22 2rc8_A Glutamate [NMDA] recept 98.7 2.6E-08 8.8E-13 71.9 5.3 78 9-93 154-271 (294)
23 2vha_A Periplasmic binding tra 98.6 7.6E-08 2.6E-12 68.0 6.9 77 9-93 120-231 (287)
24 3i6v_A Periplasmic His/Glu/Gln 98.6 3.8E-08 1.3E-12 67.9 4.8 67 14-93 102-200 (232)
25 2y7i_A STM4351; arginine-bindi 98.6 9.6E-08 3.3E-12 64.4 6.3 73 11-93 104-211 (229)
26 2iee_A ORF2, probable ABC tran 98.6 7.8E-08 2.7E-12 67.9 5.5 72 10-93 123-229 (271)
27 1lst_A Lysine, arginine, ornit 98.5 2.1E-07 7.1E-12 63.3 7.0 57 12-76 104-160 (239)
28 2a5s_A N-methyl-D-aspartate re 98.5 3E-08 1E-12 71.2 2.6 77 9-93 142-262 (284)
29 2yjp_A Putative ABC transporte 98.5 1.9E-07 6.7E-12 66.8 6.7 75 9-93 154-259 (291)
30 1xt8_A Putative amino-acid tra 98.5 2.2E-07 7.7E-12 66.0 6.6 75 9-93 143-248 (292)
31 2yln_A Putative ABC transporte 98.5 2.7E-07 9.3E-12 65.9 6.5 56 9-76 154-209 (283)
32 3g3k_A Glutamate receptor, ion 98.5 2.3E-07 8E-12 64.4 5.4 78 8-93 118-236 (259)
33 3kzg_A Arginine 3RD transport 98.4 3.4E-07 1.2E-11 62.6 6.0 58 9-76 100-157 (237)
34 1pb7_A N-methyl-D-aspartate re 98.4 1.2E-07 4.2E-12 68.5 3.9 79 9-93 154-269 (292)
35 2v3u_A Glutamate receptor delt 98.4 8.9E-07 3E-11 61.2 7.3 78 8-93 114-241 (265)
36 2v25_A Major cell-binding fact 98.3 1.2E-06 4.1E-11 59.9 6.5 76 9-93 138-244 (259)
37 1mqi_A Glutamate receptor 2; G 98.2 6E-06 2.1E-10 57.3 8.1 75 9-93 119-239 (263)
38 3ix1_A N-formyl-4-amino-5-amin 97.8 2.4E-05 8.1E-10 56.1 4.9 60 8-76 95-158 (302)
39 3uif_A Sulfonate ABC transport 97.7 6E-05 2.1E-09 55.4 6.1 61 8-76 108-172 (348)
40 3ksx_A Nitrate transport prote 97.7 8.4E-05 2.9E-09 53.9 6.2 61 8-76 120-184 (324)
41 2x26_A Periplasmic aliphatic s 97.6 0.00014 4.8E-09 51.9 6.1 59 9-76 95-158 (308)
42 3qsl_A Putative exported prote 97.6 0.00012 4.2E-09 52.4 5.5 58 10-76 129-193 (346)
43 2ozz_A Hypothetical protein YH 97.5 8.4E-05 2.9E-09 54.4 4.6 48 22-76 113-161 (231)
44 3un6_A Hypothetical protein sa 97.4 0.00016 5.5E-09 52.9 4.9 61 8-76 142-208 (341)
45 2xxp_A CPS2A; replication, pep 97.3 0.0002 6.8E-09 55.8 4.4 58 8-76 25-88 (398)
46 2de3_A Dibenzothiophene desulf 97.3 0.00037 1.3E-08 52.5 5.2 60 8-76 108-224 (365)
47 4ddd_A Immunogenic protein; ss 97.3 0.0006 2E-08 50.6 6.2 62 8-78 135-203 (327)
48 3p7i_A PHND, subunit of alkylp 97.2 0.00052 1.8E-08 51.1 5.4 78 8-93 111-235 (321)
49 3n5l_A Binding protein compone 97.2 0.00059 2E-08 50.2 5.4 78 8-93 101-226 (310)
50 4esw_A Pyrimidine biosynthesis 97.1 0.00073 2.5E-08 49.6 5.3 58 9-76 101-162 (342)
51 2f5x_A BUGD; periplasmic bindi 96.9 0.0028 9.4E-08 47.4 7.1 62 8-76 120-191 (312)
52 2qpq_A Protein BUG27; alpha/be 96.8 0.0042 1.4E-07 46.0 7.0 62 8-76 111-182 (301)
53 1us5_A Putative GLUR0 ligand b 96.7 0.0033 1.1E-07 44.8 5.9 59 9-76 121-186 (314)
54 2zzv_A ABC transporter, solute 96.7 0.0024 8.1E-08 47.9 5.1 55 8-76 163-217 (361)
55 2dvz_A BUGE, putative exported 96.6 0.0062 2.1E-07 45.5 7.1 62 8-76 124-195 (314)
56 2pfz_A Putative exported prote 96.6 0.0031 1.1E-07 46.2 5.3 54 9-76 128-181 (301)
57 2pfy_A Putative exported prote 96.5 0.0034 1.2E-07 45.9 4.8 54 9-76 129-182 (301)
58 2vpn_A Periplasmic substrate b 96.5 0.0039 1.3E-07 45.9 5.2 55 9-76 130-184 (316)
59 2hpg_A ABC transporter, peripl 96.4 0.0041 1.4E-07 46.4 5.1 56 8-76 147-202 (327)
60 2x7q_A Ca3427, possible thiami 96.2 0.0095 3.2E-07 43.2 5.8 57 10-76 111-176 (321)
61 2xwv_A Sialic acid-binding per 96.1 0.0089 3E-07 44.2 5.4 55 9-76 133-187 (312)
62 2g29_A Nitrate transport prote 96.1 0.0092 3.1E-07 45.4 5.5 54 15-76 151-210 (417)
63 1zbm_A Hypothetical protein AF 96.0 0.0057 2E-07 43.1 3.7 51 15-76 99-150 (280)
64 2czl_A Hypothetical protein TT 96.0 0.011 3.7E-07 41.5 4.9 53 14-76 91-143 (272)
65 2i49_A Bicarbonate transporter 95.9 0.016 5.4E-07 44.8 6.0 57 14-76 153-218 (429)
66 2hzl_A Trap-T family sorbitol/ 95.6 0.013 4.4E-07 43.9 4.3 54 8-76 162-215 (365)
67 1sw5_A Osmoprotection protein 94.6 0.026 8.9E-07 40.6 3.3 59 10-76 124-189 (275)
68 3fxb_A Trap dicarboxylate tran 93.8 0.099 3.4E-06 38.8 5.2 55 9-76 144-198 (326)
69 1r9l_A Glycine betaine-binding 93.0 0.13 4.5E-06 37.8 4.8 60 10-76 107-187 (309)
70 1xs5_A 29 kDa protein, membran 91.6 0.25 8.6E-06 35.4 4.7 60 8-76 89-170 (241)
71 2rin_A Putative glycine betain 91.5 0.27 9.2E-06 35.9 4.8 59 10-76 104-177 (298)
72 3hn0_A Nitrate transport prote 90.9 0.28 9.7E-06 35.1 4.3 49 17-76 94-149 (283)
73 3u65_B TP33 protein; tetratric 90.0 0.33 1.1E-05 36.1 4.2 55 9-76 145-201 (328)
74 3mwb_A Prephenate dehydratase; 89.4 0.25 8.7E-06 37.4 3.2 50 21-76 6-57 (313)
75 4ef1_A Pheromone COB1/lipoprot 88.6 0.89 3E-05 33.3 5.5 62 8-76 90-175 (246)
76 1p99_A Hypothetical protein PG 88.4 0.39 1.3E-05 35.4 3.5 27 9-36 126-152 (295)
77 3tmg_A Glycine betaine, L-prol 87.7 0.83 2.8E-05 33.1 4.9 60 10-76 109-181 (280)
78 1ofu_X SULA, hypothetical prot 86.8 0.44 1.5E-05 31.1 2.7 46 30-76 44-89 (119)
79 2qmw_A PDT, prephenate dehydra 86.1 1.1 3.6E-05 33.2 4.7 49 22-76 4-54 (267)
80 2qmx_A Prephenate dehydratase; 83.4 1.5 5E-05 32.6 4.5 45 21-76 6-52 (283)
81 4ib2_A Putative lipoprotein; p 83.3 1.1 3.7E-05 33.0 3.6 47 22-76 13-65 (252)
82 3l6g_A Betaine ABC transporter 82.8 0.69 2.4E-05 33.1 2.4 59 10-76 95-164 (256)
83 2nxo_A Hypothetical protein SC 80.3 0.4 1.4E-05 34.2 0.4 51 13-76 95-150 (291)
84 3tqw_A Methionine-binding prot 77.0 2.7 9.2E-05 30.6 4.0 48 22-76 5-58 (240)
85 1xs5_A 29 kDa protein, membran 76.8 1.7 5.9E-05 31.0 2.9 47 22-76 5-57 (241)
86 3k2d_A ABC-type metal ION tran 75.9 2.6 9E-05 30.7 3.6 48 22-76 8-61 (237)
87 1oft_A SULA, hypothetical prot 74.6 2.3 8E-05 29.3 3.0 46 30-76 86-131 (161)
88 3luy_A Probable chorismate mut 73.3 2.8 9.4E-05 31.8 3.3 48 22-76 7-62 (329)
89 3up9_A Putative uncharacterize 73.1 2.3 8E-05 31.1 2.8 48 22-76 9-62 (245)
90 4ef1_A Pheromone COB1/lipoprot 73.1 2.4 8.3E-05 30.9 2.9 47 22-76 6-58 (246)
91 1h3d_A ATP-phosphoribosyltrans 72.8 3.5 0.00012 31.0 3.7 55 10-76 115-169 (299)
92 3gxa_A Outer membrane lipoprot 72.3 2.6 8.8E-05 31.4 2.9 47 22-76 25-78 (275)
93 3ir1_A Outer membrane lipoprot 70.3 3.1 0.00011 30.5 2.9 47 22-76 3-56 (245)
94 1nh8_A ATP phosphoribosyltrans 67.9 4.2 0.00014 30.7 3.3 64 10-85 120-183 (304)
95 3hn0_A Nitrate transport prote 67.1 4.3 0.00015 28.8 3.0 48 22-76 7-60 (283)
96 2y7p_A LYSR-type regulatory pr 64.3 5.3 0.00018 26.2 2.9 19 58-76 45-63 (218)
97 2vd3_A ATP phosphoribosyltrans 63.3 4.6 0.00016 30.2 2.7 65 10-85 105-169 (289)
98 1p99_A Hypothetical protein PG 62.5 5.7 0.0002 29.0 3.1 46 22-76 41-92 (295)
99 3o66_A Glycine betaine/carniti 61.7 15 0.00053 26.6 5.3 59 10-76 129-195 (282)
100 4hy3_A Phosphoglycerate oxidor 59.9 5.2 0.00018 30.5 2.5 28 58-85 272-304 (365)
101 3oxn_A Putative transcriptiona 59.3 9.1 0.00031 25.0 3.4 19 58-76 56-74 (241)
102 2yvq_A Carbamoyl-phosphate syn 58.7 9.8 0.00034 24.9 3.4 58 15-76 44-102 (143)
103 2hxr_A HTH-type transcriptiona 58.4 11 0.00039 24.4 3.7 51 21-76 31-85 (238)
104 3r6u_A Choline-binding protein 56.5 24 0.00081 25.6 5.5 59 10-76 130-196 (284)
105 3mst_A Putative nitrate transp 56.2 12 0.00041 27.6 3.8 51 20-81 88-143 (244)
106 3ksx_A Nitrate transport prote 55.8 9 0.00031 27.0 3.1 48 22-76 31-85 (324)
107 1b93_A Protein (methylglyoxal 55.2 22 0.00076 24.0 4.8 35 33-76 49-88 (152)
108 3cni_A Putative ABC type-2 tra 55.0 13 0.00044 24.0 3.5 50 21-81 10-65 (156)
109 4ab5_A Transcriptional regulat 52.5 8.7 0.0003 24.4 2.3 19 58-76 45-63 (222)
110 3jv9_A OXYR, transcriptional r 52.3 10 0.00035 23.9 2.6 19 58-76 41-59 (219)
111 3p7i_A PHND, subunit of alkylp 52.3 12 0.0004 27.3 3.3 36 34-76 38-73 (321)
112 3ho7_A OXYR; beta-alpha-barrel 52.2 12 0.00039 24.0 2.9 19 58-76 48-66 (232)
113 1i6a_A OXYR, hydrogen peroxide 50.3 12 0.00042 24.0 2.8 19 58-76 42-60 (219)
114 4esw_A Pyrimidine biosynthesis 50.2 6.7 0.00023 28.2 1.6 34 35-76 32-65 (342)
115 3n5l_A Binding protein compone 50.1 11 0.00037 27.1 2.7 36 34-76 28-63 (310)
116 1sw5_A Osmoprotection protein 49.8 11 0.00038 26.5 2.7 47 22-76 8-62 (275)
117 2xw6_A MGS, methylglyoxal synt 49.2 37 0.0013 22.4 5.1 35 33-76 41-80 (134)
118 1vmd_A MGS, methylglyoxal synt 49.2 29 0.00099 24.2 4.7 35 33-76 65-104 (178)
119 2ql3_A Probable transcriptiona 48.1 18 0.00062 22.8 3.3 19 58-76 42-60 (209)
120 2duw_A Putative COA-binding pr 46.1 19 0.00065 23.3 3.2 60 12-80 4-80 (145)
121 3r26_A Molybdate-binding perip 44.9 19 0.00064 24.6 3.2 58 11-76 107-173 (237)
122 1atg_A MODA, periplasmic molyb 44.0 14 0.00049 23.6 2.3 57 13-76 95-163 (231)
123 2vd2_A ATP phosphoribosyltrans 43.8 29 0.00098 24.8 4.1 61 13-86 107-167 (214)
124 4got_A Methionine-binding lipo 43.7 14 0.00049 26.9 2.5 47 22-76 8-60 (249)
125 3bsu_A Ribonuclease H1, RNAse 42.6 28 0.00097 19.3 3.2 41 21-69 11-51 (53)
126 2h9b_A HTH-type transcriptiona 40.7 23 0.00078 24.4 3.1 50 22-76 92-145 (312)
127 2q5c_A NTRC family transcripti 37.3 29 0.00098 23.7 3.2 45 13-67 134-178 (196)
128 3cg4_A Response regulator rece 36.6 44 0.0015 19.7 3.7 33 34-76 25-57 (142)
129 1ve4_A ATP phosphoribosyltrans 36.4 23 0.00079 25.1 2.6 54 21-84 108-161 (206)
130 2fyi_A HTH-type transcriptiona 36.0 27 0.00094 22.5 2.8 19 58-76 51-69 (228)
131 2i6e_A Hypothetical protein; N 35.8 42 0.0014 24.1 4.0 50 12-76 99-153 (301)
132 3gt7_A Sensor protein; structu 35.2 35 0.0012 20.9 3.1 33 34-76 25-57 (154)
133 3i42_A Response regulator rece 35.2 28 0.00095 20.3 2.5 34 33-76 20-53 (127)
134 3grc_A Sensor protein, kinase; 34.2 37 0.0013 20.1 3.0 33 34-76 24-56 (140)
135 3gzg_A Molybdate-binding perip 34.0 48 0.0017 23.1 4.0 60 10-76 119-189 (253)
136 1gtk_A Porphobilinogen deamina 33.7 26 0.00088 26.5 2.6 16 61-76 65-80 (313)
137 3o66_A Glycine betaine/carniti 33.2 33 0.0011 24.8 3.1 48 22-75 11-67 (282)
138 2j6i_A Formate dehydrogenase; 33.2 19 0.00065 27.0 1.8 28 58-85 263-296 (364)
139 3r6u_A Choline-binding protein 33.1 29 0.001 25.1 2.8 48 22-75 14-68 (284)
140 3eod_A Protein HNR; response r 32.2 50 0.0017 19.2 3.4 45 22-76 8-57 (130)
141 3f6p_A Transcriptional regulat 31.4 53 0.0018 19.0 3.4 33 34-76 20-52 (120)
142 2h98_A HTH-type transcriptiona 31.3 34 0.0012 23.7 2.8 50 22-76 92-145 (313)
143 3onm_A Transcriptional regulat 30.3 39 0.0013 21.9 2.8 50 22-76 29-82 (238)
144 2b4l_A Glycine betaine-binding 30.3 31 0.0011 24.6 2.5 47 22-77 167-220 (268)
145 1uth_A LYSR-type regulatory pr 30.0 35 0.0012 23.5 2.7 19 58-76 142-160 (315)
146 3t6k_A Response regulator rece 29.8 48 0.0016 19.8 3.0 33 34-76 22-54 (136)
147 2qxy_A Response regulator; reg 29.8 51 0.0017 19.5 3.1 33 34-76 22-54 (142)
148 3em5_A Beta-1,3-glucanase; gly 29.7 57 0.002 24.4 3.9 40 31-79 18-57 (316)
149 1z7m_E ATP phosphoribosyltrans 29.6 23 0.00078 25.1 1.6 59 14-84 105-163 (208)
150 4h1h_A LMO1638 protein; MCCF-l 29.6 82 0.0028 23.1 4.8 58 17-76 9-84 (327)
151 3hdv_A Response regulator; PSI 29.4 76 0.0026 18.5 3.9 34 33-76 24-58 (136)
152 3lte_A Response regulator; str 28.7 54 0.0018 19.1 3.1 33 34-76 24-56 (132)
153 2lpm_A Two-component response 28.6 97 0.0033 19.3 4.4 42 31-82 23-67 (123)
154 3gl9_A Response regulator; bet 28.3 55 0.0019 19.1 3.1 33 34-76 20-52 (122)
155 3ur8_A Glucan endo-1,3-beta-D- 28.3 62 0.0021 24.2 3.9 40 32-80 20-59 (323)
156 2qr3_A Two-component system re 28.1 51 0.0018 19.3 2.9 25 46-76 29-53 (140)
157 3k5p_A D-3-phosphoglycerate de 27.9 45 0.0015 25.8 3.1 24 58-81 250-274 (416)
158 1al3_A Cys regulon transcripti 26.9 59 0.002 22.4 3.4 19 58-76 130-148 (324)
159 2pln_A HP1043, response regula 26.5 62 0.0021 19.0 3.1 50 21-82 18-72 (137)
160 3kht_A Response regulator; PSI 26.4 83 0.0028 18.6 3.7 35 34-76 23-57 (144)
161 4g2n_A D-isomer specific 2-hyd 26.2 43 0.0015 25.1 2.7 29 58-86 269-302 (345)
162 2rdm_A Response regulator rece 26.1 78 0.0027 18.2 3.5 37 34-80 23-62 (132)
163 1ixc_A CBNR, LYSR-type regulat 26.1 34 0.0012 22.9 2.0 19 58-76 128-146 (294)
164 3ecr_A Porphobilinogen deamina 25.8 41 0.0014 26.0 2.5 17 60-76 82-98 (364)
165 3fzv_A Probable transcriptiona 25.4 54 0.0019 22.0 2.9 19 58-76 132-150 (306)
166 3fxq_A LYSR type regulator of 25.3 41 0.0014 22.9 2.3 19 58-76 129-147 (305)
167 3hv2_A Response regulator/HD d 24.9 48 0.0017 20.1 2.4 46 22-76 15-64 (153)
168 2gkg_A Response regulator homo 24.7 50 0.0017 18.8 2.4 37 33-79 22-60 (127)
169 3pp8_A Glyoxylate/hydroxypyruv 24.6 58 0.002 23.9 3.1 28 58-85 235-268 (315)
170 1o63_A ATP phosphoribosyltrans 24.3 29 0.00098 24.9 1.3 54 21-84 103-156 (219)
171 2rjn_A Response regulator rece 24.3 71 0.0024 19.2 3.1 33 34-76 25-57 (154)
172 1qhk_A RNAse HI, protein (ribo 24.1 92 0.0031 16.7 3.3 38 21-66 9-46 (47)
173 2j48_A Two-component sensor ki 23.8 56 0.0019 18.1 2.4 33 34-76 19-51 (119)
174 1ryo_A Serotransferrin; iron t 23.8 39 0.0013 25.2 2.0 19 58-76 44-62 (327)
175 3m6m_D Sensory/regulatory prot 23.7 54 0.0018 19.8 2.5 46 22-76 15-64 (143)
176 1iej_A Ovotransferrin; iron, m 23.2 40 0.0014 25.2 2.0 19 58-76 41-59 (332)
177 3nhm_A Response regulator; pro 22.8 95 0.0032 17.9 3.4 37 33-76 17-53 (133)
178 3bbl_A Regulatory protein of L 22.8 1.1E+02 0.0039 20.5 4.2 38 35-76 33-70 (287)
179 2kl0_A Putative thiamin biosyn 22.6 71 0.0024 18.5 2.7 26 21-48 7-32 (73)
180 1iuk_A Hypothetical protein TT 22.6 50 0.0017 21.1 2.2 58 14-80 6-80 (140)
181 1h45_A Lactoferrin; metal tran 22.3 43 0.0015 25.0 2.0 19 58-76 42-60 (334)
182 3kwm_A Ribose-5-phosphate isom 22.2 46 0.0016 23.7 2.1 53 17-76 23-87 (224)
183 2pju_A Propionate catabolism o 22.2 56 0.0019 23.0 2.6 47 23-76 111-160 (225)
184 2kg5_A ARF-GAP, RHO-GAP domain 22.1 54 0.0018 20.3 2.2 25 17-42 14-38 (100)
185 3h5i_A Response regulator/sens 22.0 98 0.0034 18.3 3.4 38 33-80 22-62 (140)
186 1aq0_A 1,3-1,4-beta-glucanase; 21.5 97 0.0033 22.9 3.8 38 32-78 18-55 (306)
187 1ghs_A 1,3-beta-glucanase; hyd 21.4 86 0.0029 23.2 3.5 38 33-79 19-56 (306)
188 4gmk_A Ribose-5-phosphate isom 21.3 1.5E+02 0.0051 21.2 4.7 22 17-38 18-39 (228)
189 2d59_A Hypothetical protein PH 21.1 83 0.0028 20.0 3.0 59 13-80 14-87 (144)
190 2zay_A Response regulator rece 21.1 48 0.0017 19.7 1.8 34 33-76 25-58 (147)
191 3cnb_A DNA-binding response re 21.1 1.1E+02 0.0037 17.8 3.4 24 47-76 37-60 (143)
192 3evt_A Phosphoglycerate dehydr 20.8 71 0.0024 23.5 3.0 28 58-85 233-266 (324)
193 3a10_A Response regulator; pho 20.7 96 0.0033 17.4 3.0 33 34-76 19-51 (116)
194 3hg7_A D-isomer specific 2-hyd 20.5 72 0.0025 23.6 2.9 28 58-85 236-269 (324)
195 3fvv_A Uncharacterized protein 20.4 1.1E+02 0.0037 19.7 3.6 30 13-43 100-132 (232)
196 3uw1_A Ribose-5-phosphate isom 20.3 64 0.0022 23.3 2.5 50 21-76 33-93 (239)
197 3kto_A Response regulator rece 20.1 38 0.0013 20.2 1.1 29 46-80 32-62 (136)
No 1
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=98.96 E-value=8.5e-10 Score=77.47 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhh---CCCC-CCcccccCCCCCCChhhHHHHHhcCCeeEEEE--------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVL---NFKP-GSNKKINAKNGYNSITSYPMAFESGDIAAAFL-------- 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~---~~~~-~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~-------- 76 (94)
..+++++||+ |++||+..||....++.+.+ |+++ .++..|+ +.++.+++|.+|+|||++.
T Consensus 127 ~~i~~~~dL~--g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~------~~~~~~~~l~~G~vDa~~~~~~~~~~~ 198 (259)
T 4dz1_A 127 ITLNNLNELN--KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYP------TYNETMADLKNGNLDLAFIEEPVYFTF 198 (259)
T ss_dssp CCCCSGGGGG--GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEES------SHHHHHHHHHHTSCSEEEEEHHHHHHH
T ss_pred CCCCCHHHhC--CCEEEEeCCcHHHHHHHHhcccccccccceeEecC------CHHHHHHHHHcCCCCEEEecHHHHHHH
Confidence 3689999999 79999999999999988732 2222 4678888 9999999999999999998
Q ss_pred ----------------------eecCCCCChHHhHHHhh
Q 047464 77 ----------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 ----------------------afpkGSpL~~dvn~aiL 93 (94)
+|+|+++|+..||++|-
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~ 237 (259)
T 4dz1_A 199 KNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLK 237 (259)
T ss_dssp HHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHH
T ss_pred hccCCCceEeecccCCCceEEEEEeCChHHHHHHHHHHH
Confidence 99999999999999984
No 2
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=98.96 E-value=1.3e-09 Score=76.22 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=66.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
..+.+++||+ |++||++.|+....++.+.+ ...++..|+ +.++++++|.+|+|||++.
T Consensus 113 ~~~~~~~dl~--g~~i~v~~g~~~~~~l~~~~--~~~~i~~~~------~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~ 182 (243)
T 4h5g_A 113 EKYKDLTSLE--SANIAAQKGTVPESMVKEQL--PKAQLTSLT------NMGEAVNELQAGKIDAVHMDEPVALSYAAKN 182 (243)
T ss_dssp TTCCSHHHHH--TSEEEEETTSHHHHHHHHHC--TTSEEEEES------CHHHHHHHHHHTSCSEEEEEHHHHHHHHHHC
T ss_pred ccccccccCC--CCEEEecCCcHHHHHHHHhc--ccceeEEeC------CHHHHHHHHHcCCccEEEecHHHHHHHHHHC
Confidence 4578999999 79999999999999998743 335788999 9999999999999999987
Q ss_pred --------------------eecCCCC-ChHHhHHHhh
Q 047464 77 --------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 --------------------afpkGSp-L~~dvn~aiL 93 (94)
||+||+| |+..||++|-
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~aL~ 220 (243)
T 4h5g_A 183 AGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKVIQ 220 (243)
T ss_dssp TTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHHHH
T ss_pred CCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHHHH
Confidence 9999997 9999999984
No 3
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=98.94 E-value=2.1e-09 Score=74.56 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=66.9
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
+.+++++||+ |++||+..|+....++.+.+ ...++..++ +.++.+++|.+|+|||++.
T Consensus 120 ~~i~~~~dL~--g~~i~v~~g~~~~~~l~~~~--~~~~~~~~~------~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~ 189 (249)
T 4f3p_A 120 TTIKSIDDLN--GKVIAAKTGTATIDWIKAHL--KPKEIRQFP------NIDQAYLALEAGRVDAAMHDTPNVLFFVNNE 189 (249)
T ss_dssp CSCCSSGGGT--TSEEEEETTSHHHHHHHHHC--CCSEEEEES------SHHHHHHHHHTTSSSEEEEEHHHHHHHHHTT
T ss_pred CCcCChHHhC--CCEEEEeCCChHHHHHHhcC--CCceEEEcC------CHHHHHHHHHcCCeeEEEeCcHHHHHHHHhC
Confidence 3589999998 79999999999999998843 334788899 9999999999999999998
Q ss_pred -------------------eecCCCCChHHhHHHhh
Q 047464 77 -------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 -------------------afpkGSpL~~dvn~aiL 93 (94)
+|+|++||+..||++|.
T Consensus 190 ~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~ 225 (249)
T 4f3p_A 190 GKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELA 225 (249)
T ss_dssp TTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHH
T ss_pred CCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHH
Confidence 99999999999999984
No 4
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=98.93 E-value=3e-09 Score=71.94 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=66.0
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE-------------
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------- 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------- 76 (94)
.+.+++||+ |++||+..|+....+|.+ .++ ++..++ +.++++++|.+|+|||++.
T Consensus 107 ~i~~~~dL~--g~~v~~~~g~~~~~~l~~-~~~---~~~~~~------~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~ 174 (233)
T 1ii5_A 107 LFRSVGDLK--NKEVAVVRDTTAVDWANF-YQA---DVRETN------NLTAAITLLQKKQVEAVMFDRPALIYYTRQNP 174 (233)
T ss_dssp TCSSGGGGT--TCEEEEETTSHHHHHHHH-TTC---EEEEES------SHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCG
T ss_pred CCCCHHHhC--CCeEEEECCccHHHHHHH-cCC---CeEEcC------CHHHHHHHHHcCCccEEEeCHHHHHHHHHhCC
Confidence 689999998 799999999999999988 555 688889 9999999999999999998
Q ss_pred ------------------eecCCCCChHHhHHHhh
Q 047464 77 ------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 ------------------afpkGSpL~~dvn~aiL 93 (94)
+|+|++||++.+|++|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~ 209 (233)
T 1ii5_A 175 NLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEML 209 (233)
T ss_dssp GGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHH
T ss_pred CCcEEEeCccccccceEEEEcCCchHHHHHHHHHH
Confidence 89999999999999984
No 5
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=98.89 E-value=3.6e-09 Score=72.97 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=68.3
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
+.+++++||++.|++||+..|+....++.+. +...++..++ +.++++++|.+|+|||++.
T Consensus 103 ~~i~~~~dL~~~g~~i~v~~g~~~~~~l~~~--~~~~~~~~~~------~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~ 174 (245)
T 3k4u_A 103 KGVKSYKDLDKPELTLVTKFGVSAEYAAKRL--FKNAKLKTYD------TEAEAVQEVLNGKADMFIFDLPFNVAFMAQK 174 (245)
T ss_dssp TTCCSGGGGCCSSCEEEEETTSHHHHHHHHH--CSSSEEEEES------SHHHHHHHHHSSSSEEEEEEHHHHHHHHHHT
T ss_pred cccCCHHHhccCCcEEEEeCCcHHHHHHHhh--CCcCCEEEeC------CHHHHHHHHHcCCCcEEEEcHHHHHHHHhcC
Confidence 5689999999778999999999999999874 3334788899 9999999999999999999
Q ss_pred -------------------eecCCCC-ChHHhHHHhh
Q 047464 77 -------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 -------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~ 211 (245)
T 3k4u_A 175 GQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLA 211 (245)
T ss_dssp TTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHHH
T ss_pred CccceeecCCCcccccEEEEEcCCCHHHHHHHHHHHH
Confidence 9999998 9999999985
No 6
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.88 E-value=5.8e-09 Score=70.13 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
..+.+++||+ |++||+..|+....+|.+ .++ ++..++ +.++.+++|.+|++||++.
T Consensus 102 ~~~~~~~dL~--g~~i~~~~g~~~~~~l~~-~~~---~~~~~~------~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~ 169 (228)
T 2pyy_A 102 GDIRSIDDLP--GKVVATTAGSTAATYLRE-HHI---SVLEVP------KIEEAYKALQTKKADAVVFDAPVLLFYAANE 169 (228)
T ss_dssp CCCCSGGGCT--TCEEEEETTSHHHHHHHH-TTC---EEEEES------SHHHHHHHHHTTSSSEEEEEHHHHHHHHHTT
T ss_pred CCcCCHHHcC--CCeEEEEcCcHHHHHHHH-cCC---ceEecC------CHHHHHHHHHcCCCCEEEecHHHHHHHHHhC
Confidence 3689999998 799999999999999987 777 677888 9999999999999999998
Q ss_pred -------------------eecCCCCChHHhHHHhh
Q 047464 77 -------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 -------------------afpkGSpL~~dvn~aiL 93 (94)
+++|+++|.+.+|++|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 205 (228)
T 2pyy_A 170 GKGKVEIVGSILREESYGIILPNNSPYRKPINQALL 205 (228)
T ss_dssp TTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHH
T ss_pred CCCcEEEecccccceeEEEEEeCChHHHHHHHHHHH
Confidence 89999999999999985
No 7
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=98.87 E-value=1.6e-09 Score=78.56 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=59.6
Q ss_pred cccccCCCCCChhHHHhC-CCeeeecCCccHHHHHHHhhCCC-----------CCCcccccCCCCCCChhhHHHHHhcCC
Q 047464 3 TVSRLQPSTVDIKTLQRR-NAAVGCNGNSFIIRYLINVLNFK-----------PGSNKKINAKNGYNSITSYPMAFESGD 70 (94)
Q Consensus 3 TV~~l~~~i~~i~dL~~~-~~~VG~~~gSf~~~~L~~~~~~~-----------~~~i~~~~~~~~~~s~~~~~~aL~~g~ 70 (94)
||+++.+.|.+++||+.. +.+||++.+++..+++.+ .++. ..++..++ +.++++++|.+|+
T Consensus 147 tv~~~~~~i~~~~dL~g~~~~~vg~v~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~G~ 219 (312)
T 1yae_A 147 GSERMESPIDSADDLAKQTKIEYGAVEDGATMTFFKK-SKISTYDKMWAFMSSRRQSVLVK------SNEEGIQRVLTSD 219 (312)
T ss_dssp --------CCSHHHHHTCSSSEEECBTTSHHHHHHHH-CCBHHHHHHHHHHHHTHHHHCBS------SHHHHHHHHHHSS
T ss_pred ccccccCCCCCHHHHhhccCceEEEEeCChHHHHHHh-ccCchHHHHHHHHHhcCCCcccC------CHHHHHHHHHcCC
Confidence 677777889999999942 228998777666777765 3331 01355677 9999999999999
Q ss_pred eeEEEE-----------------------------eecCCCCChHHhHHHhh
Q 047464 71 IAAAFL-----------------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 71 i~A~v~-----------------------------afpkGSpL~~dvn~aiL 93 (94)
||++. ||+||+||+..||++|.
T Consensus 220 -Da~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~ 270 (312)
T 1yae_A 220 -YAFLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAIL 270 (312)
T ss_dssp -EEEEEEHHHHHHHHTTCTTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHH
T ss_pred -cEEEeccHHHHHHHhcCCCEEEecccccccceEEEEeCCCCcHHHHHHHHH
Confidence 99998 99999999999999985
No 8
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=98.86 E-value=4.4e-09 Score=74.25 Aligned_cols=76 Identities=18% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
+.+++++||+ |++||+..|+....+|.+.+ ...++..++ +.++++++|.+|+|||++.
T Consensus 129 ~~i~~~~dL~--g~~i~v~~g~~~~~~l~~~~--~~~~~~~~~------~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~ 198 (267)
T 3mpk_A 129 DAPVDADHLD--GRTVALVRNSAAIPLLQRRY--PQAKVVTAD------NPSEAMLMVANGQADAVVQTQISASYYVNRY 198 (267)
T ss_dssp TSCSSGGGCT--TCEEEEETTCTHHHHHHHHC--TTSEEEEES------SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHH
T ss_pred CCCCCHHHHC--CCEEEEeCCchhHHHHHHhC--CCcEEEEeC------CHHHHHHHHHcCCCCEEEecHHHHHHHHHhc
Confidence 5589999999 79999999999999998743 234788899 9999999999999999999
Q ss_pred --------------------eecCCCC-ChHHhHHHhhC
Q 047464 77 --------------------VFPRGSP-LALDISEAILK 94 (94)
Q Consensus 77 --------------------afpkGSp-L~~dvn~aiL~ 94 (94)
+++|++| |+..||++|.+
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~ 237 (267)
T 3mpk_A 199 FAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYS 237 (267)
T ss_dssp CTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHHHHT
T ss_pred CCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHHHHh
Confidence 8999987 99999999853
No 9
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=98.82 E-value=7.9e-09 Score=70.77 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=65.8
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
+.+++++||+ |++||+..||....++.+ ....++..++ +.++.+++|.+|+|||++.
T Consensus 108 ~~i~~~~dL~--g~~i~v~~g~~~~~~l~~---~~~~~~~~~~------~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~ 176 (242)
T 3del_B 108 ENKHPLPLTQ--YRSVAVQTGTYQEAYLQS---LSEVHIRSFD------STLEVLMEVMHGKSPVAVLEPSIAQVVLKDF 176 (242)
T ss_dssp CCSCCCCGGG--SSCEEEETTSHHHHHHHH---STTCCEEEES------SHHHHHHHHHTTSSSEEEECHHHHHHHGGGC
T ss_pred CCCCCHHHhC--CCEEEEEcCcHHHHHHHh---CCCceEEEEC------CHHHHHHHHHcCCCCEEEecHHHHHHHHHhC
Confidence 6689999998 799999999999999988 3334788899 9999999999999999999
Q ss_pred ---------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ---------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ---------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~ 215 (242)
T 3del_B 177 PALSTATIDLPEDQWVLGYGIGVASDRPALALKIEAAVQ 215 (242)
T ss_dssp TTEEEEEEECCGGGCEEEEEEEEETTCHHHHHHHHHHHH
T ss_pred CCeEEecCccCcccccceEEEEEeCCCHHHHHHHHHHHH
Confidence 7888886 9999999884
No 10
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=98.80 E-value=5.3e-09 Score=73.07 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=64.0
Q ss_pred ccccCCCCCChhHHHhCCCeeeecCCccHHHHHHHh---hCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE----
Q 047464 4 VSRLQPSTVDIKTLQRRNAAVGCNGNSFIIRYLINV---LNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL---- 76 (94)
Q Consensus 4 V~~l~~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~---~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~---- 76 (94)
+.+=.+.+++++||+ |++||+..||....++.+. .+........+. +.++++++|.+|+|||++.
T Consensus 103 ~~~~~~~~~~~~dL~--g~~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~GrvDa~i~~~~~ 174 (243)
T 4gvo_A 103 VLDSNNSINSTKDLA--GKRVITSATSNGALVLKKINEEQGNNFEIAYEGQ------GSNDTANQLKTGRADATISTPFA 174 (243)
T ss_dssp EETTCCSCSSGGGGT--TCEEEECTTCHHHHHHHHHHHHTTSCSEEEECCS------GGGSHHHHHHHTSCSBEEECHHH
T ss_pred EeccccccCchHHhc--CCeEEEecCchHHHHHHHHHHhccccceeccccC------ChHHHHHHHHcCCccEEEccHHH
Confidence 334456799999998 7999999999888877652 222111122456 8899999999999999998
Q ss_pred --------------------------eecCCCC-ChHHhHHHhh
Q 047464 77 --------------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 --------------------------afpkGSp-L~~dvn~aiL 93 (94)
||+|++| |+..||++|-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~in~~l~ 218 (243)
T 4gvo_A 175 VDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKKVDEALQ 218 (243)
T ss_dssp HHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHHHHHHHH
Confidence 9999987 9999999984
No 11
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=98.79 E-value=7.6e-09 Score=71.62 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=65.6
Q ss_pred CCCChhHHHhC-CCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 10 STVDIKTLQRR-NAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 10 ~i~~i~dL~~~-~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
.+++++||+.. |++||+..|+....+|.+ .|++..++..++ +.++.+++|.+|+|||++.
T Consensus 112 ~i~~~~dL~~~~g~~i~~~~g~~~~~~l~~-~~~~~~~~~~~~------~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~ 184 (257)
T 2q88_A 112 GLKSYKDIADNPDAKIGAPGGGTEEKLALE-AGVPRDRVIVVP------DGQSGLKMLQDGRIDVYSLPVLSINDLVSKA 184 (257)
T ss_dssp CCCBHHHHHHCTTCCEEECTTSHHHHHHHH-TTCCGGGEEECS------SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHH
T ss_pred CCCCHHHHhccCCceEEEECCcccHHHHHh-cCCCCceEEEcC------CHHHHHHHHHcCCCcEEEcCHHHHHHHHHhC
Confidence 48999999954 699999999999999987 777655778888 9999999999999999998
Q ss_pred ---------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ---------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ---------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~ 223 (257)
T 2q88_A 185 NDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAFDVELA 223 (257)
T ss_dssp CCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHHHHHHH
T ss_pred CCcceeeecccCCccccceEEEEcCCCHHHHHHHHHHHH
Confidence 6777754 8888888774
No 12
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=98.78 E-value=1e-08 Score=69.29 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE-------------
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------- 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------- 76 (94)
.+++++||+ |++||+..|+....+|.+ .+. ..++..++ +.++.+++|.+|+|||++.
T Consensus 108 ~~~~~~dL~--g~~i~~~~g~~~~~~l~~-~~~-~~~~~~~~------~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~ 177 (234)
T 3h7m_A 108 PAAGLEDLR--GRKVALHRDGIMHEYLAE-RGY-GKDLVLTP------TPADALRLLAAGGCDYAVVAMVPGMYIIRENR 177 (234)
T ss_dssp CCSSGGGGT--TSCEEEETTSHHHHHHHT-TTC-GGGEEEES------SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTT
T ss_pred CCCCHHHhC--CCEEEEEeCchHHHHHHh-cCC-CceEEEeC------CHHHHHHHHHcCCceEEEeccHHHHHHHHhcC
Confidence 489999998 799999999999999987 443 23677788 9999999999999999998
Q ss_pred ------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |++.||++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 213 (234)
T 3h7m_A 178 LTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGLA 213 (234)
T ss_dssp CTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHHH
T ss_pred CCceEEeccccCCCceEEEEeCCCHHHHHHHHHHHH
Confidence 8999986 9999999884
No 13
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=98.76 E-value=4.8e-09 Score=84.68 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=69.6
Q ss_pred CccccccCCCCCChhHHHhC-CCeeeecCCccHHHHHHHhhCCCC-CC----cccccCCCCCCChhhHHHHHh-cCCeeE
Q 047464 1 MLTVSRLQPSTVDIKTLQRR-NAAVGCNGNSFIIRYLINVLNFKP-GS----NKKINAKNGYNSITSYPMAFE-SGDIAA 73 (94)
Q Consensus 1 mLTV~~l~~~i~~i~dL~~~-~~~VG~~~gSf~~~~L~~~~~~~~-~~----i~~~~~~~~~~s~~~~~~aL~-~g~i~A 73 (94)
+||++++++.|++++||.++ +..+|+..++...+|+.+ ..+.. .+ ++.+.|..-+.+.+++++.++ +++.+|
T Consensus 614 ~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 692 (823)
T 3kg2_A 614 FLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRR-SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYA 692 (823)
T ss_dssp HHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHH-CCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEE
T ss_pred HhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHh-ccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccCCceE
Confidence 48999999999999999974 357899988888888876 43321 00 111222223348999999997 566677
Q ss_pred EEE------------------------------eecCCCCChHHhHHHhhC
Q 047464 74 AFL------------------------------VFPRGSPLALDISEAILK 94 (94)
Q Consensus 74 ~v~------------------------------afpkGSpL~~dvn~aiL~ 94 (94)
++. +|||||||++.+|++|++
T Consensus 693 ~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~ 743 (823)
T 3kg2_A 693 YLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 743 (823)
T ss_dssp EEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSHHHHHHHHHH
T ss_pred EEechHHHHHHHhcCCCceEEccccccccceeEeecCCChHHHHHHHHHHH
Confidence 776 999999999999999974
No 14
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=98.75 E-value=1.7e-08 Score=69.73 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=64.9
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
+.+++++||+ |++||+..|+....++.+.+ ...++..++ +.++.+++|.+|+|||++.
T Consensus 140 ~~i~~~~dL~--g~~i~~~~g~~~~~~l~~~~--~~~~~~~~~------~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~ 209 (269)
T 4i62_A 140 ATYQSVNDLA--QKKVGAQKGSIQETMAKDLL--QNSSLVSLP------KNGNLITDLKSGQVDAVIFEEPVAKGFVENN 209 (269)
T ss_dssp TTCSSGGGGC---CEEEEETTSHHHHHHHHHC--TTSEEEEES------CHHHHHHHHHTTSSSEEEEEHHHHHHHHHHC
T ss_pred ccccCHHHhC--CCeEEEecCchHHHHHHHhC--CCCcEEecC------CHHHHHHHHHcCCCCEEEeChHHHHHHHHhC
Confidence 5689999998 79999999999999998743 234688899 9999999999999999997
Q ss_pred --------------------eecCCCC-ChHHhHHHhh
Q 047464 77 --------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 --------------------afpkGSp-L~~dvn~aiL 93 (94)
+++|++| |++.+|++|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 247 (269)
T 4i62_A 210 PDLAIADLNFEKEQDDSYAVAMKKDSKELKEAVDKTIQ 247 (269)
T ss_dssp TTEEECSCCCCC-CCCEECCEEESSCHHHHHHHHHHHH
T ss_pred CCCeEEeeccCCCcccceEEEEeCCCHHHHHHHHHHHH
Confidence 8899986 9999999874
No 15
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=98.75 E-value=1.2e-08 Score=71.42 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=64.6
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhC------CCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE-------
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLN------FKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------- 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~------~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------- 76 (94)
.+++++||+ |++||+..|+....+|.. .+ +...++..++ +.++.+++|.+|+|||++.
T Consensus 118 ~i~~~~dL~--g~~i~v~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~GrvDa~i~~~~~~~~ 188 (268)
T 3hv1_A 118 GIDSVAGMA--GKTLGAQAGSSGYDAFNA-SPKILKDVVANQKVVQYS------TFTQALIDLNSGRIDGLLIDRVYANY 188 (268)
T ss_dssp CCCSSGGGT--TCCEEEETTCHHHHHHHH-CTTTTTTTSGGGCEEEES------SHHHHHHHHHHTSCSEEEEEHHHHHH
T ss_pred CCCCHHHhC--CCEEEEEeCCchHHHHHH-hhHHHhhhcccceEEEeC------CHHHHHHHHHcCCCCEEEeCHHHHHH
Confidence 688999998 799999999999999886 33 2223567788 9999999999999999998
Q ss_pred -------------------------eecCCCC-ChHHhHHHhh
Q 047464 77 -------------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 -------------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 189 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~ 231 (268)
T 3hv1_A 189 YLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLIKKINQGFE 231 (268)
T ss_dssp HHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHHHHHHHHHH
Confidence 9999986 9999999985
No 16
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=98.75 E-value=2.3e-08 Score=68.21 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=63.1
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHHHHHHH---hhCCCCCCcc-cccCCCCCCChhhHHHHHhcCCeeEEEE-------
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFIIRYLIN---VLNFKPGSNK-KINAKNGYNSITSYPMAFESGDIAAAFL------- 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~---~~~~~~~~i~-~~~~~~~~~s~~~~~~aL~~g~i~A~v~------- 76 (94)
.+.+++++||+ |++||+..|+....++.+ ..+...-.+. .+. +.++.+++|.+|+|||++.
T Consensus 104 ~~~i~~~~dL~--g~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~L~~g~vDa~~~~~~~~~~ 175 (246)
T 4eq9_A 104 DSSIKSLDDIG--GKSTEVVQATTSAKQLEAYNAEHTDNPTILNYTKA------DFQQIMVRLSDGQFDYKIFDKIGVET 175 (246)
T ss_dssp CCSCSSGGGCT--TCEEEECTTCHHHHHHHHHHHHCTTSCCEEEECCC------CHHHHHHHHHTTSSSEEEEEHHHHHH
T ss_pred CCCCCCHHHhC--CCEEEEecCccHHHHHHHHHhhCCCcceEEEecCC------CHHHHHHHHHcCCceEEEecHHHHHH
Confidence 45689999999 799999999999998887 3332111232 235 8999999999999999999
Q ss_pred -------------------------eecCCCC-ChHHhHHHhh
Q 047464 77 -------------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 -------------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~ 218 (246)
T 4eq9_A 176 VIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDELKSFVDKRIK 218 (246)
T ss_dssp HHHHHTCTTEEEEECCCSSCCEECCEEETTCHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHHHHHHHHHHH
Confidence 8999986 9999999985
No 17
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=98.73 E-value=1.6e-08 Score=69.12 Aligned_cols=76 Identities=7% Similarity=0.032 Sum_probs=65.4
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE-------------
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------- 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------- 76 (94)
.+++++||++.|++||+..|+....++.+. ++..++..++ +.++++++|.+|+|||++.
T Consensus 114 ~i~~~~dL~~~g~~v~~~~g~~~~~~l~~~--~~~~~~~~~~------~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~ 185 (239)
T 3kbr_A 114 RFQTLEQIDQPGVTAIVNPGGTNEKFARAN--LKKARILVHP------DNVTIFQQIVDGKADLMMTDAIEARLQSRLHP 185 (239)
T ss_dssp GGSSHHHHSSTTCEEEECTTSHHHHHHHHH--CSSSEEEECC------CTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCT
T ss_pred ccCCHHHhcCCCcEEEEcCCCcHHHHHHHh--CCCCceEEeC------CHHHHHHHHHcCCcCEEEEchHHHHHHHHhCC
Confidence 588999999767999999999999999873 3334788888 9999999999999999998
Q ss_pred ------------------eecCCCCChHHhHHHhh
Q 047464 77 ------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 ------------------afpkGSpL~~dvn~aiL 93 (94)
+|+|+..|+..||++|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l~ 220 (239)
T 3kbr_A 186 ELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLH 220 (239)
T ss_dssp TEEECCCC-CCCCEEECCEECSCHHHHHHHHHHHH
T ss_pred CcEEecCCCCccccceEEEEcCCHHHHHHHHHHHH
Confidence 88884459999999874
No 18
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.73 E-value=2.1e-08 Score=69.22 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=65.1
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
+.+++++||+ |++||+..||....++.. ....++..++ +.++.+++|.+|+|||++.
T Consensus 129 ~~i~~~~dL~--g~~i~~~~g~~~~~~l~~---~~~~~~~~~~------~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~ 197 (268)
T 3qax_A 129 LETPVLPLTQ--YSSVAVQTGTYQEHYLLS---QPGICVRSFD------STLEVIMEVRYGKSPVAVLEPSVGRVVLKDF 197 (268)
T ss_dssp SCSCCCCGGG--SSCEEEETTSHHHHHHHT---STTCCEEEES------CHHHHHHHHHTTSSSEEEECHHHHHHHGGGC
T ss_pred CCCCCHHHhC--CCEEEEecCcHHHHHHHh---CCCceEEecC------CHHHHHHHHHcCCCCEEEecHHHHHHHHHhC
Confidence 5689999999 799999999999999987 3334788899 9999999999999999998
Q ss_pred ---------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ---------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ---------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |++.+|++|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~ 236 (268)
T 3qax_A 198 PNLVATRLELPPECWVLGCGLGVAKDRPEEIQTIQQAIT 236 (268)
T ss_dssp TTEEEEEEECCGGGCBCCEEEEECTTCHHHHHHHHHHHH
T ss_pred CCcEEecCccCcccccccEEEEEeCCCHHHHHHHHHHHH
Confidence 7888886 8899998874
No 19
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=98.68 E-value=1.5e-08 Score=68.09 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=63.2
Q ss_pred CCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE--------------
Q 047464 11 TVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL-------------- 76 (94)
Q Consensus 11 i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~-------------- 76 (94)
+++++||+ |++||+..|+....++.+... +..++..++ +.++.+++|.+|+|||++.
T Consensus 101 ~~~~~dL~--g~~v~~~~g~~~~~~l~~~~~-~~~~~~~~~------~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~ 171 (227)
T 3tql_A 101 TLSKQGLK--GKIIGVQGGTTFDSYLQDSFG-NSITIQRYP------SEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGR 171 (227)
T ss_dssp CCSTTTTT--TCEEEEETTSHHHHHHHHHHG-GGSEEEEES------SHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTC
T ss_pred CCCHHHhC--CCEEEEEecccHHHHHHHhcc-ccceEEEcC------CHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCC
Confidence 37999998 799999999999999988432 113678888 9999999999999999998
Q ss_pred ----------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ----------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ----------------------afpkGSp-L~~dvn~aiL 93 (94)
+++|++| |+..||++|.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 211 (227)
T 3tql_A 172 REYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLKLNKALA 211 (227)
T ss_dssp CSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHHHHHHHH
T ss_pred CCEEEecCcccCccccccceEEEEcCCCHHHHHHHHHHHH
Confidence 7788887 8999999874
No 20
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=98.67 E-value=4.8e-08 Score=65.50 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=64.3
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE-------------
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------- 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------- 76 (94)
.+++++||+ |++||+..|+....+|.+. +...++..++ +.++.+++|.+|++||++.
T Consensus 100 ~i~~~~dL~--g~~i~~~~g~~~~~~l~~~--~~~~~~~~~~------~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~ 169 (226)
T 1wdn_A 100 DVKSVKDLD--GKVVAVKSGTGSVDYAKAN--IKTKDLRQFP------NIDNAYMELGTNRADAVLHDTPNILYFIKTAG 169 (226)
T ss_dssp SCSSSTTTT--TCEEEEETTSHHHHHHHHH--CCCSEEEEES------SHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTT
T ss_pred CCCCHHHhC--CCEEEEEcCCcHHHHHHHh--CCCceEEEeC------CHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCC
Confidence 589999998 7999999999999999884 2333677788 9999999999999999998
Q ss_pred ------------------eecCCC-CChHHhHHHhh
Q 047464 77 ------------------VFPRGS-PLALDISEAIL 93 (94)
Q Consensus 77 ------------------afpkGS-pL~~dvn~aiL 93 (94)
+|+|++ +|++.+|++|.
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~ 205 (226)
T 1wdn_A 170 NGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALK 205 (226)
T ss_dssp TTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred CCceEEecCCcccCceEEEEeCCCHHHHHHHHHHHH
Confidence 899998 49999999874
No 21
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.66 E-value=9.9e-08 Score=67.08 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=65.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
..+++++||+ |++||+..|+....++.+.++ ...++..++ +.++.+++|.+|+|||++.
T Consensus 137 ~~i~~~~dL~--g~~i~~~~g~~~~~~l~~~~~-~~~~i~~~~------~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~ 207 (272)
T 2pvu_A 137 SPVKNALDLK--GKTIGVQNATTGQEAAEKLFG-KGPHIKKFE------TTVVAIMELLNGGVDAVITDNAVANEYVKNN 207 (272)
T ss_dssp CCCCSGGGGT--TSCEEEETTSHHHHHHHHHHC-SSTTEEEES------SHHHHHHHHHTTSCSEEEEEHHHHHHHHHHC
T ss_pred CCCCCHHHhC--CCeEEEEcCchHHHHHHHhcC-CCCeEEEcC------CHHHHHHHHHcCCccEEEeCHHHHHHHHHhC
Confidence 3488999998 799999999999999988656 445788888 9999999999999999998
Q ss_pred ---------------------eecCCCCChHHhHHHhh
Q 047464 77 ---------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 ---------------------afpkGSpL~~dvn~aiL 93 (94)
+|+|+.+|++.+|++|.
T Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~ 245 (272)
T 2pvu_A 208 PNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALK 245 (272)
T ss_dssp GGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHHHH
T ss_pred CCCceEEeccccccCCceEEEEEeCCHHHHHHHHHHHH
Confidence 77888668888888874
No 22
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=98.66 E-value=2.6e-08 Score=71.91 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=63.2
Q ss_pred CCCCChhHHH----hCCCeeeecCCccHHHHHHHhhCCCC-CCc--ccccCCCCCCChhhHHHHHhc--CCeeEEEE---
Q 047464 9 PSTVDIKTLQ----RRNAAVGCNGNSFIIRYLINVLNFKP-GSN--KKINAKNGYNSITSYPMAFES--GDIAAAFL--- 76 (94)
Q Consensus 9 ~~i~~i~dL~----~~~~~VG~~~gSf~~~~L~~~~~~~~-~~i--~~~~~~~~~~s~~~~~~aL~~--g~i~A~v~--- 76 (94)
+.+++++||+ ..|++||++.||....|+.+.+ -+. ..+ ..+. +.++.+++|.+ |++||++.
T Consensus 154 ~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~-~~~~~~i~~~~~~------~~~~~~~~l~~~~GrvDa~i~~~~ 226 (294)
T 2rc8_A 154 TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSF-PEMHEYMRRYNVP------ATPDGVQYLKNDPEKLDAFIMDKA 226 (294)
T ss_dssp CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHC-HHHHHHHGGGCBS------SHHHHHHHHHSSSCCCSEEEEEHH
T ss_pred CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHH-HHHHHHHHHhcCC------CHHHHHHHHHhccCceeEEEecHH
Confidence 3588999998 2379999999999999998731 100 012 2356 99999999999 99999998
Q ss_pred ----------------------------eecCCCCChHHhHHHhh
Q 047464 77 ----------------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 ----------------------------afpkGSpL~~dvn~aiL 93 (94)
|||||+||+..||++|.
T Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~ 271 (294)
T 2rc8_A 227 LLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELIS 271 (294)
T ss_dssp HHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHH
Confidence 99999999999999986
No 23
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=98.63 E-value=7.6e-08 Score=68.01 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=64.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhC--CCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE----------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLN--FKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL---------- 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~--~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~---------- 76 (94)
..+++++||+ |++||+..||....++.+... ....++..|. +.++.+++|.+|+|||++.
T Consensus 120 ~~i~sl~dL~--g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~L~~G~vDa~i~~~~~~~~~~~ 191 (287)
T 2vha_A 120 GDIKDFADLK--GKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAK------DHGDSFRTLESGRAVAFMMDDALLAGERA 191 (287)
T ss_dssp SSCCSGGGGT--TCEEEEETTSHHHHHHHHHHHHTTCCCEEEEES------SHHHHHHHHHTTSCSEEEEEHHHHHHHHT
T ss_pred CCCCCHHHcC--CCEEEEeCCCcHHHHHHHHhhccCCCceEEEcC------CHHHHHHHHHcCCeeEEEeChHHHHHHHH
Confidence 4589999998 799999999999988877321 0122677788 9999999999999999998
Q ss_pred ----------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ----------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ----------------------afpkGSp-L~~dvn~aiL 93 (94)
+++|++| |+..+|++|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~ 231 (287)
T 2vha_A 192 KAKKPDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIA 231 (287)
T ss_dssp TSSSGGGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred hCCCCCceEecCCccccCceEEEEeCCCHHHHHHHHHHHH
Confidence 8999987 9999999884
No 24
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=98.61 E-value=3.8e-08 Score=67.94 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=60.6
Q ss_pred hhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE-----------------
Q 047464 14 IKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL----------------- 76 (94)
Q Consensus 14 i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~----------------- 76 (94)
++||+ | +||+..|+....++.+ .++ ++..++ +.++++++|.+|+|||++.
T Consensus 102 ~~dL~--g-~igv~~g~~~~~~l~~-~~~---~~~~~~------~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~ 168 (232)
T 3i6v_A 102 GADLS--G-IVAAQTATIQAGYIAE-SGA---TLVEFA------TPEETIAAVRNGEADAVFADRDYLVPIVAESGGELM 168 (232)
T ss_dssp TCCTT--S-EEEEETTSHHHHHHHH-SSS---EEEEES------SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSE
T ss_pred hHHhC--C-CEEEecCchHHHHHHh-cCC---eEEEeC------CHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeE
Confidence 67887 8 9999999999999998 554 788899 9999999999999999998
Q ss_pred --------------eecCCCC-ChHHhHHHhh
Q 047464 77 --------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 --------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 169 ~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~ 200 (232)
T 3i6v_A 169 FVGDDVPLGGGVGMGLRESDGELRGKFDAAIT 200 (232)
T ss_dssp EEEEEEECSSCEEEEECTTCHHHHHHHHHHHH
T ss_pred EecCCCCCCCcEEEEEeCCCHHHHHHHHHHHH
Confidence 8999986 9999999984
No 25
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=98.59 E-value=9.6e-08 Score=64.45 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=61.6
Q ss_pred CCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE--------------
Q 047464 11 TVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL-------------- 76 (94)
Q Consensus 11 i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~-------------- 76 (94)
+.+++||+ |++||+..|+....+|.+.+ ...++..++ +.++.+++|.+|+|||++.
T Consensus 104 ~~~~~dL~--g~~v~~~~g~~~~~~l~~~~--~~~~~~~~~------~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~ 173 (229)
T 2y7i_A 104 YHTFADLK--GKKVGLENGTTHQRYLQDKQ--QAITPVAYD------SYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPD 173 (229)
T ss_dssp CCSTGGGT--TCEEEEETTSHHHHHHHHHC--TTSEEEEES------CHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTT
T ss_pred CCCHHHHC--CCEEEEecCCcHHHHHHHhC--CCCeEEecC------CHHHHHHHHHcCCcCEEEechHHHHHHHHhCCC
Confidence 78999998 79999999999999998732 223677888 9999999999999999998
Q ss_pred --------------------eecCCCC-ChHHhHHHhh
Q 047464 77 --------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 --------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 211 (229)
T 2y7i_A 174 YAIMDERASDPDYYGKGLGIAVRKDNDALLQEINAALD 211 (229)
T ss_dssp EEECSCCBCCTTTSCCCBCCEECTTCHHHHHHHHHHHH
T ss_pred eEEeccccccccccccceEEEEeCCCHHHHHHHHHHHH
Confidence 6667766 8888888774
No 26
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=98.57 E-value=7.8e-08 Score=67.90 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhH--HHHHhcCCeeEEEE-----------
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSY--PMAFESGDIAAAFL----------- 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~--~~aL~~g~i~A~v~----------- 76 (94)
.+++++||+ |++||+..|+....+|++ .+. ++..++ +.++. +++|.+|+||++++
T Consensus 123 ~i~~~~dL~--g~~i~v~~g~~~~~~l~~-~~~---~~~~~~------~~~~~~l~~~L~~GrvD~i~~~~~~~~~~~~~ 190 (271)
T 2iee_A 123 GIKTLKDLK--GKKAAGAATTVYMEVARK-YGA---KEVIYD------NATNEQYLKDVANGRTDVILNDYYLQTLALAA 190 (271)
T ss_dssp GCSSGGGGT--TCEEESCTTSHHHHHHHH-TTC---EEEECS------SCCHHHHHHHHHHTSSCEEEEEHHHHHHHHHH
T ss_pred CCCCHHHhC--CCEEEEeCCccHHHHHHH-cCC---ceEEeC------ChhhHHHHHHHHcCCccEEeccHHHHHHHHHh
Confidence 588999998 799999999999999977 666 788888 99999 99999999995554
Q ss_pred ---------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ---------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ---------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..||++|.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al~ 229 (271)
T 2iee_A 191 FPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEALK 229 (271)
T ss_dssp CTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHHH
T ss_pred CCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHHH
Confidence 8899886 8999999874
No 27
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=98.55 E-value=2.1e-07 Score=63.33 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=47.7
Q ss_pred CChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 12 VDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 12 ~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+++||+ |++||+..||....+|.+.+.-..-++..++ +.++.+++|.+|++||++.
T Consensus 104 ~~~~dL~--g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~l~~G~vDa~~~ 160 (239)
T 1lst_A 104 PTLESLK--GKHVGVLQGSTQEAYANDNWRTKGVDVVAYA------NQDLIYSDLTAGRLDAALQ 160 (239)
T ss_dssp SSHHHHT--TCEEEEETTSHHHHHHHHHTGGGTCEEEEES------SHHHHHHHHHTTSCSEEEE
T ss_pred CCHHHhC--CCEEEEEcCccHHHHHHHhcccCCCeEEEcC------CHHHHHHHHHcCCCCEEEe
Confidence 4899998 7999999999999999874311112677788 9999999999999999997
No 28
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=98.53 E-value=3e-08 Score=71.22 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=58.0
Q ss_pred CCCCChhHHHhC-------CCeeeecCCccHHHHHHHhhCCCC--CCcccc--cCCCCCCChhhHHHHHhcCCeeEEEE-
Q 047464 9 PSTVDIKTLQRR-------NAAVGCNGNSFIIRYLINVLNFKP--GSNKKI--NAKNGYNSITSYPMAFESGDIAAAFL- 76 (94)
Q Consensus 9 ~~i~~i~dL~~~-------~~~VG~~~gSf~~~~L~~~~~~~~--~~i~~~--~~~~~~~s~~~~~~aL~~g~i~A~v~- 76 (94)
..+++++||+.. +.+||++.+++..+++.+. +.. ..++.| . +.++++++|.+|++||++.
T Consensus 142 ~~~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~~l~~~--~~~~~~~i~~~~~~------~~~~~l~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 142 TQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNN--YPYMHQYMTRFNQR------GVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp CCCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHTT--CHHHHHHHGGGCCS------SHHHHHHHHHTTSCSEEEEE
T ss_pred cccccccccccCChhHcCCCceEEEEeCCchHHHHHHH--HHHHHHHHHhccCC------CHHHHHHHHHcCCeeEEEEc
Confidence 447777787743 6799987655555555542 211 125556 6 9999999999999999998
Q ss_pred --------------------------------eecCCCCChHHhHHHhh
Q 047464 77 --------------------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 --------------------------------afpkGSpL~~dvn~aiL 93 (94)
||+|+|||+..||++|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~ 262 (284)
T 2a5s_A 214 AAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALL 262 (284)
T ss_dssp HHHHHHHHHTCTTSCEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCCEEEeCCccccccCceEEEecCCCHHHHHHHHHHH
Confidence 89999999999999986
No 29
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=98.53 E-value=1.9e-07 Score=66.76 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=64.3
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
..|++++||+ |++||+..|+....+|.+.+ ...++..++ +.++.+++|.+|+|||++.
T Consensus 154 ~~i~sl~dL~--gk~v~~~~g~~~~~~l~~~~--~~~~~~~~~------~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~ 223 (291)
T 2yjp_A 154 KPITDMAQLK--DQTLLVNKGTTADAFFTKSH--PEVKLLKFD------QNTETFDALKDGRGVALAHDNALLWAWAKEN 223 (291)
T ss_dssp SCCCSGGGGT--TSEEEEETTSHHHHHHHHHC--TTSEEEEES------SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHC
T ss_pred CCCCCHHHhC--CCEEEEecCCcHHHHHHHhC--CCceEEEeC------CHHHHHHHHHcCCccEEEecHHHHHHHHHhC
Confidence 3689999998 79999999999999998843 233677888 9999999999999999998
Q ss_pred ------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |++.+|++|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~al~ 259 (291)
T 2yjp_A 224 PNFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIA 259 (291)
T ss_dssp TTEEEEECCSSSCEEECCEEETTCHHHHHHHHHHHH
T ss_pred CCeEEcCCcccCCcceEEEEeCCCHHHHHHHHHHHH
Confidence 7888876 8888988874
No 30
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=98.51 E-value=2.2e-07 Score=66.03 Aligned_cols=75 Identities=15% Similarity=0.066 Sum_probs=64.4
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE------------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL------------ 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~------------ 76 (94)
..+++++||+ |++||+..||....++.+.+ ...++..++ +.++.+++|.+|+|||++.
T Consensus 143 ~~i~~~~dL~--g~~i~~~~g~~~~~~l~~~~--~~~~~~~~~------~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~ 212 (292)
T 1xt8_A 143 SNITSVEDLK--DKTLLLNKGTTADAYFTQNY--PNIKTLKYD------QNTETFAALMDKRGDALSHDNTLLFAWVKDH 212 (292)
T ss_dssp CCCCSSGGGT--TSEEEEETTSHHHHHHHHHC--TTSEEEEES------SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHC
T ss_pred CCCCCHHHhC--CCEEEEeCCCcHHHHHHHhC--CCceEEEcC------CHHHHHHHHHcCCccEEEecHHHHHHHHHhC
Confidence 3689999998 79999999999999998732 223677788 9999999999999999998
Q ss_pred ------------------eecCCCC-ChHHhHHHhh
Q 047464 77 ------------------VFPRGSP-LALDISEAIL 93 (94)
Q Consensus 77 ------------------afpkGSp-L~~dvn~aiL 93 (94)
+|+|++| |+..+|++|.
T Consensus 213 ~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~~l~ 248 (292)
T 1xt8_A 213 PDFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLII 248 (292)
T ss_dssp TTEEEEEEEEEEEEEECCEEETTCHHHHHHHHHHHH
T ss_pred CCeEEcccccccCceeEEEEeCCCHHHHHHHHHHHH
Confidence 7888887 8999998874
No 31
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=98.48 E-value=2.7e-07 Score=65.89 Aligned_cols=56 Identities=7% Similarity=-0.053 Sum_probs=50.4
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|++++||+ |++||+..|+....+|.+ .++ ++..+. +.++.+++|.+|+|||++.
T Consensus 154 ~~i~s~~dL~--G~~v~v~~g~~~~~~l~~-~~~---~~~~~~------~~~~~~~~l~~g~vDa~i~ 209 (283)
T 2yln_A 154 SNIKSIADIK--GVKTAQSLTSNYGEKAKA-AGA---QLVPVD------GLAQSLTLIEQKRADATLN 209 (283)
T ss_dssp CSCCSGGGCT--TSEEEECTTSHHHHHHHH-TTC---EEEECS------SHHHHHHHHHTTSCCEEEE
T ss_pred CCCCCHHHhC--CCEEEEecCchHHHHHHH-cCC---eEEEeC------CHHHHHHHHHcCCCCEEEe
Confidence 4489999997 899999999999999987 666 688888 9999999999999999998
No 32
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=98.45 E-value=2.3e-07 Score=64.43 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCCCCChhHHHhC-CCeeeecCCccHHHHHHHhhCCCC-----------CCcccccCCCCCCChhhHHHHHhcCCeeEEE
Q 047464 8 QPSTVDIKTLQRR-NAAVGCNGNSFIIRYLINVLNFKP-----------GSNKKINAKNGYNSITSYPMAFESGDIAAAF 75 (94)
Q Consensus 8 ~~~i~~i~dL~~~-~~~VG~~~gSf~~~~L~~~~~~~~-----------~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v 75 (94)
...+++++||+.. +..||+..+++..+++.+ .++.. ..+..++ +.++++++|.+|+ ||++
T Consensus 118 ~~~i~~~~dL~g~~~~~ig~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~g~-da~i 189 (259)
T 3g3k_A 118 GTPIDSADDLAKQTKIEYGAVEDGATMTFFKR-SKISTYDKMWAFMSSRRQSVLVK------SNEEGIQRVLTSD-YAFL 189 (259)
T ss_dssp SSSCCSHHHHHTCSSSEEEEETTSHHHHHHHH-CCSHHHHHHHHHHHHTHHHHEES------SHHHHHHHHHHSS-EEEE
T ss_pred CccccCHHHhccCCCceEEEecCcHHHHHHhh-ccchhHHHHHHHHHhcCCCcccC------CHHHHHHHHHhCC-eEEE
Confidence 3458999999942 234999999888888876 33310 1234567 9999999999999 9888
Q ss_pred E-----------------------------eecCCCCChHHhHHHhh
Q 047464 76 L-----------------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 76 ~-----------------------------afpkGSpL~~dvn~aiL 93 (94)
. ||+||+||+..||++|.
T Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~ 236 (259)
T 3g3k_A 190 MESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAIL 236 (259)
T ss_dssp EEHHHHHHHHHHCTTEEEESSCSSCEEECCEEETTCTHHHHHHHHHH
T ss_pred echHHHHHHhcCCceEEEecccceeeeEEEEECCCCccHHHHHHHHH
Confidence 7 99999999999999985
No 33
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=98.45 E-value=3.4e-07 Score=62.63 Aligned_cols=58 Identities=9% Similarity=0.163 Sum_probs=49.3
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..+++++||+ |++||+..|+....++.+.+ ...++..++ +.++.+++|.+|+|||++.
T Consensus 100 ~~~~~~~dL~--g~~i~~~~g~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~l~~G~vDa~~~ 157 (237)
T 3kzg_A 100 SKISTFDDLH--GKKIGVRKGTPYARQVLSEN--RNNQVIFYE------LIQDMLLGLSNNQVDASLM 157 (237)
T ss_dssp CSCCSGGGGT--TCEEEEETTSTHHHHHHHTC--SSCEEEEES------SHHHHHHHHHTTSSSEEEE
T ss_pred CCCCCHHHhC--CCEEEEecCCHHHHHHHHhC--CCCcEEEeC------CHHHHHHHHHcCCCCEEEe
Confidence 3489999999 79999999999777777633 224788899 9999999999999999987
No 34
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=98.45 E-value=1.2e-07 Score=68.52 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=62.0
Q ss_pred CCCCChhHHHhCC---Ce-eeecCCccHHHHHHHhhCCC----CCCcccccCCCCCCChhhHHHHHhcCCeeEEEE----
Q 047464 9 PSTVDIKTLQRRN---AA-VGCNGNSFIIRYLINVLNFK----PGSNKKINAKNGYNSITSYPMAFESGDIAAAFL---- 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~---~~-VG~~~gSf~~~~L~~~~~~~----~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~---- 76 (94)
..+++++||+..| +. +|++.||....|+.+...+. ..++..++ +.++.+++|.+|++||++.
T Consensus 154 ~~i~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~G~vDa~i~d~~~ 227 (292)
T 1pb7_A 154 TRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYE------SAAEAIQAVRDNKLHAFIWDSAV 227 (292)
T ss_dssp CCCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBS------SHHHHHHHHHTTSCSEEEEEHHH
T ss_pred cCCCCCcCccccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCC------CHHHHHHHHHcCCceEEEEcHHH
Confidence 4578899998433 24 58999999988886522110 11355677 9999999999999999998
Q ss_pred -------------------------eecCCCCChHHhHHHhh
Q 047464 77 -------------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 77 -------------------------afpkGSpL~~dvn~aiL 93 (94)
||||||||+..||++|+
T Consensus 228 ~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~ 269 (292)
T 1pb7_A 228 LEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSIL 269 (292)
T ss_dssp HHHHHHHCTTEEECSSCSEEEEECCEEETTCSSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEcCccccCCceEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999986
No 35
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=98.40 E-value=8.9e-07 Score=61.18 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=59.3
Q ss_pred CCCCCChhHHHh-CCCeeeecCCccHHHHHHHhhCCCCCC------------------cccccCCCCCCChhhHHHHHhc
Q 047464 8 QPSTVDIKTLQR-RNAAVGCNGNSFIIRYLINVLNFKPGS------------------NKKINAKNGYNSITSYPMAFES 68 (94)
Q Consensus 8 ~~~i~~i~dL~~-~~~~VG~~~gSf~~~~L~~~~~~~~~~------------------i~~~~~~~~~~s~~~~~~aL~~ 68 (94)
...+++++||++ -+...|+..+++...++.+ .|++... +..++ +.++.+++|.+
T Consensus 114 ~~~i~~~~dL~~~v~v~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~l~~ 186 (265)
T 2v3u_A 114 GTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRM-KGLNPFERDSMYSQMWRMINRSNGSENNVL------ESQAGIQKVKY 186 (265)
T ss_dssp TCCCCSHHHHHTCSSSCEECBTTSHHHHHHHH-HHTCTTCSCTHHHHHHHHHCC-----CCBS------SHHHHHHHHHH
T ss_pred CCCccchhhhhhhhcEEEEEeccHHHHHHHHh-cCCCcccccHHHHHHHHHHHhhcCcccccC------CHHHHHHHHHc
Confidence 345899999983 1345677777778888877 5554221 23566 99999999999
Q ss_pred CCeeEEEE-------------------------------eecCCCCChHHhHHHhh
Q 047464 69 GDIAAAFL-------------------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 69 g~i~A~v~-------------------------------afpkGSpL~~dvn~aiL 93 (94)
|++ |++. ||+|++||++.||++|.
T Consensus 187 G~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~ 241 (265)
T 2v3u_A 187 GNY-AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRIL 241 (265)
T ss_dssp SSC-EEEEEHHHHHHHHHHCTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHH
T ss_pred CCE-EEEEcchHHHHHHhcCCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHH
Confidence 999 6655 99999999999999985
No 36
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.33 E-value=1.2e-06 Score=59.88 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=63.0
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHh---hCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE---------
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINV---LNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL--------- 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~---~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~--------- 76 (94)
..+.+++||+ |++||+..||....++.+. .|++ .++..++ +.++.+++|.+|+|||++.
T Consensus 138 ~~i~~~~dL~--g~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~------~~~~~~~~l~~g~vDa~~~~~~~~~~~~ 208 (259)
T 2v25_A 138 KKYKSLADMK--GANIGVAQAATTKKAIGEAAKKIGID-VKFSEFP------DYPSIKAALDAKRVDAFSVDKSILLGYV 208 (259)
T ss_dssp GCCCSGGGCT--TCEEEEETTCSHHHHHHHHHHHTTCC-CEEEEES------SHHHHHHHHHTTSSSEEEEEHHHHTTTC
T ss_pred CCCCCHHHhC--CCEEEEecCCchHHHHHHHHHhcCCc-eeEEEeC------CHHHHHHHHHcCCCcEEEecHHHHHHHH
Confidence 4578999998 7999999999988777652 3653 2466788 9999999999999999998
Q ss_pred ------------------eecCCC-CChHHhHHHhh
Q 047464 77 ------------------VFPRGS-PLALDISEAIL 93 (94)
Q Consensus 77 ------------------afpkGS-pL~~dvn~aiL 93 (94)
+|+|++ +|++.+|++|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l~ 244 (259)
T 2v25_A 209 DDKSEILPDSFEPQSYGIVTKKDDPAFAKYVDDFVK 244 (259)
T ss_dssp CTTEEECSCCCSEEEECCEEETTCHHHHHHHHHHHH
T ss_pred HhCCCccccccccceeEEEEcCCCHHHHHHHHHHHH
Confidence 899998 48999998874
No 37
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=98.22 E-value=6e-06 Score=57.31 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=55.5
Q ss_pred CCCCChhHHHhCCCe---eeecCCccHHHHHHHhhCCC-----------CCCcccccCCCCCCChhhHHHHH--hcCCee
Q 047464 9 PSTVDIKTLQRRNAA---VGCNGNSFIIRYLINVLNFK-----------PGSNKKINAKNGYNSITSYPMAF--ESGDIA 72 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~---VG~~~gSf~~~~L~~~~~~~-----------~~~i~~~~~~~~~~s~~~~~~aL--~~g~i~ 72 (94)
..+++++||+ |++ ||++.+++..+++.+ .++. ..++..++ +.++++++| .+|+ |
T Consensus 119 ~~i~~~~dL~--g~~~~~ig~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~g~-d 188 (263)
T 1mqi_A 119 TPIESAEDLS--KQTEIAYGTLDSGSTKEFFRR-SKIAVFDKMWTYMRSAEPSVFVR------TTAEGVARVRKSKGK-Y 188 (263)
T ss_dssp CSCCSHHHHH--TCSSSEEECBSSSHHHHHHHH-CCSHHHHHHHHHHHHCSSCCCBS------SHHHHHHHHHHTTTS-E
T ss_pred cccCCHHHHh--cccCeeEEEEeccHHHHHHHh-ccchhHHHHHHHHhhCCCceecC------CHHHHHHHHhhcCCc-E
Confidence 4589999999 455 686554444455544 3321 12466677 999999999 9999 7
Q ss_pred EEEE------------------------------eecCCCCChHHhHHHhh
Q 047464 73 AAFL------------------------------VFPRGSPLALDISEAIL 93 (94)
Q Consensus 73 A~v~------------------------------afpkGSpL~~dvn~aiL 93 (94)
|++. ||+|+++|+..||++|.
T Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~ 239 (263)
T 1mqi_A 189 AYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVL 239 (263)
T ss_dssp EEEEEHHHHHHHTTSTTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHH
T ss_pred EEEechHHHHHHHhcCCCceEEcCCcccccceEEEEeCCCccHHHHHHHHH
Confidence 7776 89999999999999985
No 38
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.80 E-value=2.4e-05 Score=56.07 Aligned_cols=60 Identities=12% Similarity=-0.051 Sum_probs=46.9
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHH----HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFII----RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~----~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.|++++||+ |++||+..+++.. .+|++ .|++++.++.++ ...+...+|.+|+|||++.
T Consensus 95 ~s~i~s~~DL~--Gk~i~~~~~~~~~~~~~~~l~~-~Gl~~~~v~~~~------~~~~~~~al~~G~vDa~~~ 158 (302)
T 3ix1_A 95 EQDFDSPADLV--GLTVGYPGIPVNEPILKTMVEA-AGGDYEQVHLMD------VGFELGASIVSGRADAVVG 158 (302)
T ss_dssp GGCCSSGGGGT--TSEEEECSCTTHHHHHHHHHHH-TTCCGGGCEEEE------CTTCHHHHHHHSSSSEEEE
T ss_pred CCCCCChHHcC--CCEEEeCCCcchHHHHHHHHHH-cCCCHHHeEEEe------cCccHHHHHhCCCCCEEEE
Confidence 35699999999 8999999998754 34444 788776777666 5566788999999999983
No 39
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.72 E-value=6e-05 Score=55.41 Aligned_cols=61 Identities=16% Similarity=0.126 Sum_probs=47.2
Q ss_pred CCCCCChhHHHhCCCeeeecCCccH----HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFI----IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~----~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.|++++||+ |++||+..||.. ..+|+. .|++.+.++... -+..+...+|.+|+|||++.
T Consensus 108 ~s~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~-~Gl~~~~v~~v~-----~~~~~~~~al~~G~vDa~~~ 172 (348)
T 3uif_A 108 NSTAKSIKDLK--GKKIALHRGRPWELAFSNLLQS-EGLTFKDFKIVN-----VNPQVGAAALASGTVDGFFS 172 (348)
T ss_dssp TCCCCSGGGGT--TSEEEECTTSTHHHHHHHHHHH-TTCCGGGSEEEC-----CCHHHHHHHHHHTSSSEEEE
T ss_pred CCCCCCHHHcC--CCEEEecCCChHHHHHHHHHHH-cCCCHHHeEEEE-----CCHHHHHHHHHcCCCCEEEe
Confidence 45699999999 899999999887 445555 788655555432 15678899999999999887
No 40
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.68 E-value=8.4e-05 Score=53.89 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=47.1
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHH----HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFII----RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~----~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.|++++||+ |++||+..||... .+|++ .|+++..++... + +..+...+|.+|+|||++.
T Consensus 120 ~s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~-~Gl~~~~v~~v~----~-~~~~~~~al~~G~vDa~~~ 184 (324)
T 3ksx_A 120 KSALRTVADLK--GKRIAFQKGSSAHNLLLRVLAK-SGLSMRDITPLY----L-SPANARAAFAAGQVDAWAI 184 (324)
T ss_dssp TCSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHH-TTCCGGGSEEEE----C-CHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCCHHHhC--CCEEEecCCChHHHHHHHHHHH-cCCCHHHeEEEe----C-CHHHHHHHHHcCCCCEEEE
Confidence 35699999999 8999999998654 45555 788765555432 1 5788999999999999887
No 41
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.58 E-value=0.00014 Score=51.91 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=46.7
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHH----HHHHhhCCCCCCcc-cccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIR----YLINVLNFKPGSNK-KINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~----~L~~~~~~~~~~i~-~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
+.|++++||+ |++||+..||.... +|.+ .|+++..++ .+. +..+...+|.+|+|||++.
T Consensus 95 ~~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~-~Gl~~~~v~~~~~------~~~~~~~al~~G~vDa~~~ 158 (308)
T 2x26_A 95 SPIKTVADLK--GHKVAFQKGSSSHNLLLRALRQ-AGLKFTDIQPTYL------TPADARAAFQQGNVDAWAI 158 (308)
T ss_dssp CSCCSGGGGT--TSEEEECTTSHHHHHHHHHHHH-TTCCGGGSEEEEC------CHHHHHHHHHTTSSSEEEE
T ss_pred CCCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHH-cCCCHHHeEEEec------ChHHHHHHHHcCCCCEEEe
Confidence 4589999999 79999998887654 3444 688655554 355 7888999999999999987
No 42
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.55 E-value=0.00012 Score=52.42 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=45.9
Q ss_pred CCCChhHHHhCCCeeeec-CCccHH----HHHHHhhCCCCCCc--ccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 10 STVDIKTLQRRNAAVGCN-GNSFII----RYLINVLNFKPGSN--KKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~-~gSf~~----~~L~~~~~~~~~~i--~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.|++++||+ |++||+. .||... .+|.+ .|++++.+ ..+. +..+...+|.+|+|||++.
T Consensus 129 ~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~-~G~~~~~v~~~~~~------~~~~~~~al~~G~vDa~~~ 193 (346)
T 3qsl_A 129 GYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAK-HGLKASDVSFIGVG------AGAGAVTALRSGQIDAISN 193 (346)
T ss_dssp TCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHH-TTCCGGGSEEEECC------SSHHHHHHHHHTSCSEEEE
T ss_pred CCCChHHcC--CCEEEECCCCcHHHHHHHHHHHH-cCCCHHHeEEEecC------CcHHHHHHHHcCCccEEEe
Confidence 799999998 7999998 687653 44444 78875554 4455 7789999999999999997
No 43
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.54 E-value=8.4e-05 Score=54.40 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=41.5
Q ss_pred CeeeecCCccHHHHHHHhhCCCCCCcccc-cCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFIIRYLINVLNFKPGSNKKI-NAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~~~L~~~~~~~~~~i~~~-~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
++||++.||.-+.+|.+. .+....+..| . +..+.+++|.+|+|||++-
T Consensus 113 krVGvd~gS~dq~~lt~~-~~~g~~Ve~ve~------~y~~~i~~L~~G~IDA~Iw 161 (231)
T 2ozz_A 113 KRVGLDSRSADQKIMTDV-FFGDSDVERVDL------SYHESLQRIVKGDVDAVIW 161 (231)
T ss_dssp CEEEECTTCHHHHHHHHH-HHTTSCCEEEEC------CHHHHHHHHHHTSCCEEEE
T ss_pred EEEEecCCChhHHHHHhh-hcCCCeEEEEEC------CHHHHHHHHHcCCccEEEE
Confidence 799999999999999884 3444467788 7 8999999999999999998
No 44
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.43 E-value=0.00016 Score=52.95 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=46.1
Q ss_pred CCCCCChhHH-HhCCCeeeecCCccHHH-----HHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTL-QRRNAAVGCNGNSFIIR-----YLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL-~~~~~~VG~~~gSf~~~-----~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.|++++|| + |++||+..++.... +|++ .|++++.++... + +..+...+|.+|+|||++.
T Consensus 142 ~s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~-~Gl~~~dv~~~~----~-~~~~~~~al~~G~vDa~~~ 208 (341)
T 3un6_A 142 GMHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQ-LKIKPGHFSYHE----M-SPAEMPAALSEHRITGYSV 208 (341)
T ss_dssp TCCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHH-TTCCTTSEEEEE----C-CGGGHHHHHHTTSCSEEEE
T ss_pred CCCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHH-cCCCHHHeEEEE----c-ChHHHHHHHHcCCCCEEEe
Confidence 4568999999 6 89999998655443 4555 888776655433 1 4678899999999999987
No 45
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=97.31 E-value=0.0002 Score=55.80 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=47.8
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHHHHHHHhh------CCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVL------NFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~------~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.|++++||+ | ||++.|+....|....- |.+ -.++.|+ +.++++.+|.+|++||+|.
T Consensus 25 ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~~-~~~~~y~------~~~~a~~aL~nG~vDAiv~ 88 (398)
T 2xxp_A 25 DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNTD-LTVNQSS------SYLAAYKSLIAGETKAIVL 88 (398)
T ss_dssp TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCCC-CEEEECS------SHHHHHHHHHTTSCSCEEE
T ss_pred CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCCc-ceEEecC------CHHHHHHHHHcCCCCEEEE
Confidence 45799999999 4 99999999987765422 532 2477888 9999999999999999998
No 46
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=97.25 E-value=0.00037 Score=52.54 Aligned_cols=60 Identities=15% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCCCCChhHHHhCCCeeeecC-------Ccc-----------------------HHHHHHHhhCCCCCCccc--ccCCCC
Q 047464 8 QPSTVDIKTLQRRNAAVGCNG-------NSF-----------------------IIRYLINVLNFKPGSNKK--INAKNG 55 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~-------gSf-----------------------~~~~L~~~~~~~~~~i~~--~~~~~~ 55 (94)
.+.|++++||+ |++||+.. ||. ...+|++ .|++.+.++. ++
T Consensus 108 ds~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~~-~Gl~~~dv~~v~~~---- 180 (365)
T 2de3_A 108 DSPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEH-GELGVDDVELVPIS---- 180 (365)
T ss_dssp TCSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHH-TTCCGGGSEEEECC----
T ss_pred CCCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHHH-cCCCHHHeEEEECC----
Confidence 35699999999 89999986 652 4566766 8887655543 33
Q ss_pred CCChh-------------------------hHHHHHhcCCeeEEEE
Q 047464 56 YNSIT-------------------------SYPMAFESGDIAAAFL 76 (94)
Q Consensus 56 ~~s~~-------------------------~~~~aL~~g~i~A~v~ 76 (94)
..+ +...+|.+|+|||++.
T Consensus 181 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~vDA~~~ 224 (365)
T 2de3_A 181 --SPGVDVPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYS 224 (365)
T ss_dssp --CTTTCCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEE
T ss_pred --CccccccccccccccccccccccccchhhHHHHHhCCCcCEEEE
Confidence 221 2689999999999987
No 47
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=97.25 E-value=0.0006 Score=50.65 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=47.3
Q ss_pred CCCCCChhHHHhCCCeeeec-CCccHH----HHHHHhhCCCCCCc--ccccCCCCCCChhhHHHHHhcCCeeEEEEee
Q 047464 8 QPSTVDIKTLQRRNAAVGCN-GNSFII----RYLINVLNFKPGSN--KKINAKNGYNSITSYPMAFESGDIAAAFLVF 78 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~-~gSf~~----~~L~~~~~~~~~~i--~~~~~~~~~~s~~~~~~aL~~g~i~A~v~af 78 (94)
.+.|++++||+ |++|++. .||... .++.. .|++.+++ ..|. +..+...+|.+|+|||+|...
T Consensus 135 ds~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~-~Gi~~~~v~~v~~~------g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 135 SSNISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGE-KGWTKKDFSVMAEL------KSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp TSSCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHH-HTCCGGGCSEEECC------CHHHHHHHHHTTSCSBEEEEE
T ss_pred CCCCCCHHHhC--CCEEecCCCCccHHHHHHHHHHH-cCCChHhcchhhcC------CHHHHHHHHHcCCCCEEEEcc
Confidence 45699999998 7899984 566432 34444 88875544 4567 999999999999999999844
No 48
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.19 E-value=0.00052 Score=51.09 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=55.9
Q ss_pred CCCCCChhHH----HhCCCeeee-cCCccH----HHH-HHHhhCCCCCCc--ccccCCCCCCChhhHHHHHhcCCeeEEE
Q 047464 8 QPSTVDIKTL----QRRNAAVGC-NGNSFI----IRY-LINVLNFKPGSN--KKINAKNGYNSITSYPMAFESGDIAAAF 75 (94)
Q Consensus 8 ~~~i~~i~dL----~~~~~~VG~-~~gSf~----~~~-L~~~~~~~~~~i--~~~~~~~~~~s~~~~~~aL~~g~i~A~v 75 (94)
.+.|++++|| + |++||+ ..||++ ..+ |....|+++..+ ..+. +.++.+.+|.+|+|||++
T Consensus 111 ds~i~sl~DL~~~~k--gk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~------~~~~a~~al~~G~vDa~~ 182 (321)
T 3p7i_A 111 DSPINNLNDLLAKRK--DLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNA------GHETNALAVANKQVDVAT 182 (321)
T ss_dssp TCSCCSHHHHHHTGG--GCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEEC------CHHHHHHHHHTTSSSEEE
T ss_pred CCCCCCHHHHHhhcC--CCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecC------CHHHHHHHHHCCCceEEE
Confidence 4569999999 6 689985 445543 233 323367754332 2345 788999999999999999
Q ss_pred E---------------------------------eecCC-C-CChHHhHHHhh
Q 047464 76 L---------------------------------VFPRG-S-PLALDISEAIL 93 (94)
Q Consensus 76 ~---------------------------------afpkG-S-pL~~dvn~aiL 93 (94)
. ++|+| + ++++.|+.+|+
T Consensus 183 ~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~ 235 (321)
T 3p7i_A 183 NNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFM 235 (321)
T ss_dssp EEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHH
T ss_pred echHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHH
Confidence 7 78998 3 38999999886
No 49
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.17 E-value=0.00059 Score=50.25 Aligned_cols=78 Identities=13% Similarity=0.148 Sum_probs=54.4
Q ss_pred CCCCCChhHH----HhCCCeeee-cCCccHH----HH-HHHhhCCCCC---CcccccCCCCCCChhhHHHHHhcCCeeEE
Q 047464 8 QPSTVDIKTL----QRRNAAVGC-NGNSFII----RY-LINVLNFKPG---SNKKINAKNGYNSITSYPMAFESGDIAAA 74 (94)
Q Consensus 8 ~~~i~~i~dL----~~~~~~VG~-~~gSf~~----~~-L~~~~~~~~~---~i~~~~~~~~~~s~~~~~~aL~~g~i~A~ 74 (94)
.+.|++++|| + |++||+ ..||++. .+ |....|+++. ....+. +.++.+.+|.+|+|||+
T Consensus 101 ds~i~sl~DL~~~~k--gk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g------~~~~~~~al~~G~vDa~ 172 (310)
T 3n5l_A 101 DSKIDSLEDMLANAK--SLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNS------SHEVNALAVANKQVDVA 172 (310)
T ss_dssp TCSCCSHHHHHHTGG--GCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEEC------CHHHHHHHHHTTSSSEE
T ss_pred CCCCCCHHHHhhhcC--CCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccC------CHHHHHHHHHcCCccEE
Confidence 4569999999 6 689996 4555432 22 3222565421 122235 77789999999999999
Q ss_pred EE---------------------------------eecCCC-C-ChHHhHHHhh
Q 047464 75 FL---------------------------------VFPRGS-P-LALDISEAIL 93 (94)
Q Consensus 75 v~---------------------------------afpkGS-p-L~~dvn~aiL 93 (94)
+. ++|+|- | ++..||++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~ 226 (310)
T 3n5l_A 173 TFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFF 226 (310)
T ss_dssp EEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHH
T ss_pred EecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHH
Confidence 98 789983 3 8999999886
No 50
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=97.10 E-value=0.00073 Score=49.64 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=45.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHH----HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFII----RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~----~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
+.+++++||+ |++||+.+ |+.. .+|++ .|++++.+...+ ...+...+|.+|+|||++.
T Consensus 101 ~~~~~~~dLk--GK~ig~~~-~~~~~~l~~~L~~-~Gl~~~dv~~v~------~~~~~~~al~~G~vDa~~~ 162 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYVG-EFGKIQVDELTKH-YGMTPDDYVAVR------CGMNVAKYILEGTIDCGIG 162 (342)
T ss_dssp SCCSSGGGGT--TCEEEESS-SHHHHHHHHHHGG-GTCCGGGSEEEE------CGGGHHHHHHHTSSSEEEE
T ss_pred cccCCHHHhC--CCEEEecC-CchHHHHHHHHHH-cCCChhheEEec------CCHHHHHHHHcCCCCEEEE
Confidence 4467899999 89999964 4433 34444 899888888877 6677789999999999987
No 51
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.91 E-value=0.0028 Score=47.43 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=45.6
Q ss_pred CCCCCChhHHHh------CCCeeeecC-CccHH---HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQR------RNAAVGCNG-NSFII---RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~------~~~~VG~~~-gSf~~---~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.+++++||+. ....+|..+ ||... ..+.+..|++.. ..+|. +..+...+|.+|+||++|.
T Consensus 120 ds~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~~-~Vpy~------G~~~a~~aL~~G~VD~~~~ 191 (312)
T 2f5x_A 120 DFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLL-TIPYK------GTAPAMNDLLGKQVDLMCD 191 (312)
T ss_dssp TCSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCCE-EEECS------SHHHHHHHHHTTSSCEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCeE-EeccC------ChHHHHHHHHcCCccEEEe
Confidence 456899999974 246899884 66532 334444788422 34577 9999999999999999998
No 52
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.76 E-value=0.0042 Score=46.04 Aligned_cols=62 Identities=10% Similarity=-0.020 Sum_probs=45.2
Q ss_pred CCCCCChhHHHh------CCCeeeecC-CccHH---HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQR------RNAAVGCNG-NSFII---RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~------~~~~VG~~~-gSf~~---~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.+++++||.. ....+|..+ ||... ..+.+..|++. ...+|. +..+...+|.+|+||++|.
T Consensus 111 ~s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~-~~Vpy~------g~~~a~~al~~G~vD~~~~ 182 (301)
T 2qpq_A 111 GSKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHM-VHVPYK------GCGPALNDVLGSQIGLAVV 182 (301)
T ss_dssp TCSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECS------SHHHHHHHHHTTSSSCEEE
T ss_pred CCCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCe-EEeccC------ChHHHHHHHHCCCccEEEE
Confidence 456899999974 235888875 55433 33444478842 234577 9999999999999999998
No 53
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=96.70 E-value=0.0033 Score=44.80 Aligned_cols=59 Identities=12% Similarity=-0.034 Sum_probs=44.6
Q ss_pred CCCCChhHHHhCCCeeee-cCCccHH----HHHHHhhCCCCCCc--ccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGC-NGNSFII----RYLINVLNFKPGSN--KKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~-~~gSf~~----~~L~~~~~~~~~~i--~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..+++++||+ |++|++ ..||... .+++. .|++...+ ..|. +..+...+|.+|+|||++.
T Consensus 121 ~~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~-~G~~~~~v~~~~~~------~~~~~~~al~~G~vda~~~ 186 (314)
T 1us5_A 121 AGIRTVADLK--GKRVVVGDVGSGTEQNARQILEA-YGLTFDDLGQAIRV------SASQGIQLMQDKRADALFY 186 (314)
T ss_dssp SSCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHH-TTCCGGGSSEEECC------CHHHHHHHHHTTSCSEEEE
T ss_pred CCCCcHHHhC--CCEeecCCCCchHHHHHHHHHHH-cCCCHHHcCceecC------CHHHHHHHHHcCCccEEEE
Confidence 4588999999 689988 5677543 34444 78864444 2455 8889999999999999997
No 54
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=96.66 E-value=0.0024 Score=47.92 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=43.7
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
...|++++||+ |++|.+. |+....+++. +|.. ...+ +..|.+.||++|.|||++.
T Consensus 163 ~~pI~s~~DLk--G~kirv~-~~~~~~~~~~-lGa~---pv~~-------~~~e~~~ALq~G~VDg~~~ 217 (361)
T 2zzv_A 163 KKPIRRFEDFK--GVKLRVP-GGMIAEVFAA-AGAS---TVLL-------PGGEVYPALERGVIDAADF 217 (361)
T ss_dssp SSCCCSGGGGT--TCEEECC-SHHHHHHHHH-TTCE---EECC-------CGGGHHHHHHTTSCSEEEC
T ss_pred CCCcCChHHhC--CCEEeec-CHHHHHHHHH-cCCe---eeec-------ChHHHHHHHHcCCcceeec
Confidence 35699999999 8999998 5666777777 8884 3333 3668899999999999975
No 55
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.62 E-value=0.0062 Score=45.53 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=45.5
Q ss_pred CCCCCChhHHHh------CCCeeeecC-CccH---HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQR------RNAAVGCNG-NSFI---IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~------~~~~VG~~~-gSf~---~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.+++++||+. ....+|..+ ||.. ...+.+..|++.. ..+|. +..+...+|.+|+||++|.
T Consensus 124 ds~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~~-~Vpy~------G~~~a~~al~~G~vD~~~~ 195 (314)
T 2dvz_A 124 KFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIV-HVPYK------GSGPAVADAVGGQIELIFD 195 (314)
T ss_dssp TSSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCCE-EEECS------SHHHHHHHHHHTSSSEEEE
T ss_pred CCCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCeE-EcccC------CHHHHHHHHHcCCceEEEE
Confidence 456899999974 236888884 6643 2344444788422 34577 9999999999999999998
No 56
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=96.61 E-value=0.0031 Score=46.15 Aligned_cols=54 Identities=6% Similarity=0.044 Sum_probs=43.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|++++||+ |++|.+. |+....+++. +|.. .... +..|.+.||++|.|||+..
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~-lGa~---pv~~-------~~~E~y~ALq~G~vDg~~~ 181 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAEL-VGAQ---PVTV-------QQAELAQAMATGVIDSYMS 181 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHHH-HTCE---EEEC-------CGGGHHHHHHTTSCSEEEE
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHHH-cCCc---ceec-------CHHHHHHHHhcCeeeEEec
Confidence 4699999999 7999997 6666777777 8883 3333 4678999999999999976
No 57
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=96.49 E-value=0.0034 Score=45.86 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|++++||+ |++|.+. |+....+++. +|.. .... ...|.+.||++|.|||+..
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~-lGa~---pv~~-------~~~E~y~ALq~G~vDg~~~ 182 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMAAL-MGAV---PTTV-------QTPEVPQAFSTGVIDAMLT 182 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHHHH-TTSE---EEEC-------CGGGHHHHHHTTSCSBEEE
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHHHH-cCCc---ceec-------cHHHHHHHHhcceeeeEec
Confidence 4699999999 7999997 6666777777 8873 3333 4678999999999999976
No 58
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=96.48 E-value=0.0039 Score=45.89 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=45.3
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|++++||+ |++|.+..+....++++. +|.. .... ...|.+.||++|.|||+..
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~~~-lGa~---pv~m-------~~~Evy~ALq~G~VDg~~~ 184 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETYKA-FGAT---PTPL-------PWGEVYGGLQTGIIDGQEN 184 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHH-HTCE---EEEC-------CGGGHHHHHHHTSCSEEEE
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHHHH-cCCe---eeec-------CHHHHHHHHHcCCcceeeC
Confidence 5699999999 899999877777788887 9984 3333 4678999999999999986
No 59
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=96.45 E-value=0.0041 Score=46.39 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=44.7
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
...|++++||+ |++|.+.++.....+++. +|.. .... ...|.+.||++|.||++..
T Consensus 147 ~~pI~s~~DLk--G~KiRv~~~~~~~~~~~a-lGa~---pv~m-------~~~Evy~ALq~G~VDg~~~ 202 (327)
T 2hpg_A 147 NKPIRKPEDLN--GLRIRTPGAPAWQESIRS-LGAI---PVAV-------NFGEIYTAVQTRAVDGAEL 202 (327)
T ss_dssp SSCCSSGGGGT--TCEEECCSSHHHHHHHHH-HTSE---EECC-------CGGGHHHHHHTTSCSEEEE
T ss_pred CCCCCCHHHHC--CCEEEeCCCHHHHHHHHH-cCCE---eeec-------CHHHHHHHHHcCCeeEEEC
Confidence 35699999999 799998865566777877 9984 3333 4678999999999999987
No 60
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.19 E-value=0.0095 Score=43.16 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=42.6
Q ss_pred CCCChhHHHhCCCeeeecC-CccHH---HHHHHhhCCCC-CCcccccCCCCCCChhhHHHHHhcC----CeeEEEE
Q 047464 10 STVDIKTLQRRNAAVGCNG-NSFII---RYLINVLNFKP-GSNKKINAKNGYNSITSYPMAFESG----DIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~-gSf~~---~~L~~~~~~~~-~~i~~~~~~~~~~s~~~~~~aL~~g----~i~A~v~ 76 (94)
.|++++|| ++||+.. ||... .++.+..|+++ -++..++ +..+...+|.+| +|||++.
T Consensus 111 ~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~------~~~~~~~al~~G~~~~~vDa~~~ 176 (321)
T 2x7q_A 111 DVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLS------NFKNLRDSVNLKDGVEGSDAFMW 176 (321)
T ss_dssp TCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECC------SHHHHHHHHTTCTTSCCCSEEEE
T ss_pred CCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcC------ChHHHHHHHHcCCCccceEEEEe
Confidence 79999999 7899987 66543 23333378865 2455666 888999999999 9999764
No 61
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=96.12 E-value=0.0089 Score=44.18 Aligned_cols=55 Identities=5% Similarity=0.083 Sum_probs=43.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|++++||+ |++|.+.++.....+++. +|.. .... ...|.+.||++|.|||+..
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~a-lGa~---pv~m-------~~~Evy~ALq~G~vDg~~~ 187 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAKY-VGAS---PTPM-------AFSEVYLALQTNAVDGQEN 187 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHH-HTCE---EEEC-------CGGGHHHHHHTTSSSEEEE
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHHH-cCCe---eeec-------CHHHHHHHHHcCCcceEec
Confidence 5699999999 799998864444577777 9983 3333 3678999999999999987
No 62
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=96.09 E-value=0.0092 Score=45.41 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=39.0
Q ss_pred hHHHhCCCeeeec-CCccHH----HHHHHhhCCCCC-CcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 15 KTLQRRNAAVGCN-GNSFII----RYLINVLNFKPG-SNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 15 ~dL~~~~~~VG~~-~gSf~~----~~L~~~~~~~~~-~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
+||+ |++||+. .||... .+|.+ .|+++. .++... + .+.++..+|.+|+|||++.
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~-~Gl~~~~dv~~v~----~-~~~~~~~aL~~G~vDa~~~ 210 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAA-GGMEPGKDFSTIV----V-PPAQMVANVKVNAMESFCV 210 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHH-TTCCBTTTBEEEE----C-CGGGHHHHHHTTSCSEEEE
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHH-cCCCCCCceEEEE----C-CHHHHHHHHHcCCCCEEEe
Confidence 7787 8999998 577654 34445 788765 443321 1 4578999999999999987
No 63
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=96.00 E-value=0.0057 Score=43.12 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=35.2
Q ss_pred hHHHhCCCeeeecC-CccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 15 KTLQRRNAAVGCNG-NSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 15 ~dL~~~~~~VG~~~-gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
+||+ |++||+.. ||+..-++...+. ..++ .+- +.++...+|.+|+|||++.
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~-~~~------~~~~~~~al~~G~vDa~~~ 150 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEP-VEM------PFDRIIQAVLDEEVDAGLL 150 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEE-EEC------CGGGHHHHHHTTSSSEEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCce-Eec------CHHHHHHHHHcCCCCEEEE
Confidence 7898 89999974 4544433544222 1133 244 6789999999999999885
No 64
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=95.95 E-value=0.011 Score=41.53 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=38.8
Q ss_pred hhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 14 IKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 14 i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
++||+ |++||+..+|.+..++...+ ....++. +- ...+...+|.+|+|||++.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~l-l~~~~~~-~~------~~~~~~~al~~G~vDa~~~ 143 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLY-AQGFVPV-EV------RYDRILPMVAQGEVEAGLI 143 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHH-CSSCEEE-EC------CGGGHHHHHHTTSSSEEEE
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHH-hccCcee-ec------ChHHHHHHHHCCCCCEEEE
Confidence 78998 89999998777766655533 2211222 33 5678999999999999986
No 65
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=95.88 E-value=0.016 Score=44.76 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=41.9
Q ss_pred hhHH-HhCCC--eeeec-CCccHH----HHHHHhhCCCCC-CcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 14 IKTL-QRRNA--AVGCN-GNSFII----RYLINVLNFKPG-SNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 14 i~dL-~~~~~--~VG~~-~gSf~~----~~L~~~~~~~~~-~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
++|| +..|+ +||+. .||+.. .+|.. .|++++ .++... + .+.++..+|++|+|||++.
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~-~Gl~p~~DV~~v~----~-~~~~~~~aL~~G~iDa~~~ 218 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAA-GGVDPDTDIDLLA----V-PPAETVQGMRNGTMDAFST 218 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHH-TTCCTTTTSEEEE----C-CHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHh-cCCCCCCcEEEEE----C-ChHHHHHHHHcCCccEEEe
Confidence 6899 74467 99997 677653 45555 799875 454432 1 5688999999999999987
No 66
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=95.59 E-value=0.013 Score=43.87 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=41.8
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
...|++++||+ |++|.+. | ....+++. +|.. .... ...|.+.||++|.|||+..
T Consensus 162 ~~pI~s~~DLk--G~KiR~~-~-~~~~~~~~-lGa~---pv~~-------~~~e~y~ALq~G~VDg~~~ 215 (365)
T 2hzl_A 162 RREINTVADMQ--GLKMRVG-G-FAGKVMER-LGVV---PQQI-------AGGDIYPALEKGTIDATEW 215 (365)
T ss_dssp SSCCCSTGGGT--TCEEECC-T-THHHHHHT-TTCE---EECC-------CTTSHHHHHHHTSCSEECC
T ss_pred cCCCCChHHhC--CCEEecC-C-cHHHHHHH-cCCc---ceec-------CHHHHHHHHhCCCcceeec
Confidence 35699999999 7999988 5 55677776 8874 2323 3568889999999999874
No 67
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=94.56 E-value=0.026 Score=40.56 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=38.4
Q ss_pred CCCChhHHHhC--CCeeeecCCccHH-----HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 10 STVDIKTLQRR--NAAVGCNGNSFII-----RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~~--~~~VG~~~gSf~~-----~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.|++++||++. ...+|...+-+.+ .+++ ..|++...++.. ++.+...||++|++||++.
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~-~yGl~~~~~~~~-------~~~~~~~Al~~g~vd~~~~ 189 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKK-VYGFEFKEVKQM-------EPTLMYEAIKNKQVDVIPA 189 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHH-HHTCCCSEEEEC-------CGGGHHHHHHTTSCSEEEE
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHHH-hcCCCcccccCC-------CHHHHHHHHHcCCCeEEEE
Confidence 68999999942 1155554332211 1444 488864444433 4568899999999999988
No 68
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=93.79 E-value=0.099 Score=38.77 Aligned_cols=55 Identities=5% Similarity=0.001 Sum_probs=45.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|++++||+ |.+|-+..+....++++. +|.. -.+.+ ..|.+.||+.|-||+...
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~~a-lGa~---pv~m~-------~~Evy~ALq~GvvDg~e~ 198 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESYKA-FGAT---PTPLP-------WGEVYGGLQTNVIQGQEN 198 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHHHH-HTSE---EEECC-------GGGHHHHHHTTSCCEEEE
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHHHH-cCCe---eeecC-------HHHHHHHHHcCCcceEec
Confidence 4699999999 899999887777888887 9984 33333 678999999999999987
No 69
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=93.01 E-value=0.13 Score=37.75 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=41.7
Q ss_pred CCCChhHHH--h-----------CCCeeeecCCccHHH----HHHHhhCCCCCCcccccCCCCCCCh----hhHHHHHhc
Q 047464 10 STVDIKTLQ--R-----------RNAAVGCNGNSFIIR----YLINVLNFKPGSNKKINAKNGYNSI----TSYPMAFES 68 (94)
Q Consensus 10 ~i~~i~dL~--~-----------~~~~VG~~~gSf~~~----~L~~~~~~~~~~i~~~~~~~~~~s~----~~~~~aL~~ 68 (94)
.|++++||+ + .|+.+||..|+.... .|+. +|++. .++... .+. .+...|+++
T Consensus 107 ~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~-yGL~~-~~~~~~-----~s~~~~~~~~~~A~~~ 179 (309)
T 1r9l_A 107 KITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAA-YELTN-TVTHNQ-----GNYAAMMADTISRYKE 179 (309)
T ss_dssp TCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHH-TTCTT-TEEEEC-----SCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHh-cCCCC-ceEEcC-----CCHHHHHHHHHHHHHC
Confidence 578999997 1 136899999988755 4444 78853 355433 032 356689999
Q ss_pred CCeeEEEE
Q 047464 69 GDIAAAFL 76 (94)
Q Consensus 69 g~i~A~v~ 76 (94)
|+++++..
T Consensus 180 g~~~v~~~ 187 (309)
T 1r9l_A 180 GKPVFYYT 187 (309)
T ss_dssp TCCCEEEE
T ss_pred CCCEEEEe
Confidence 99999887
No 70
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=91.65 E-value=0.25 Score=35.42 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=40.0
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHH----HHHHHhhCC------------------CCCCcccccCCCCCCChhhHHHH
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFII----RYLINVLNF------------------KPGSNKKINAKNGYNSITSYPMA 65 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~----~~L~~~~~~------------------~~~~i~~~~~~~~~~s~~~~~~a 65 (94)
+..+++++||++ |++||+.++++.. .+|++ .|+ ++.+++-.. -...+...+
T Consensus 89 s~kiksl~dL~~-G~~Iaip~d~sn~~ral~lL~~-aGli~l~~~~~~~~t~~dI~~np~~v~~~~-----l~~~~~~~a 161 (241)
T 1xs5_A 89 SRTYRHVSDFPA-GAVIAIPNDSSNEARALRLLEA-AGFIRMRAGSGLFATVEDVQQNVRNVVLQE-----VESALLPRV 161 (241)
T ss_dssp CSSCCSGGGCCT-TCEEEEECSHHHHHHHHHHHHH-TTSCEECTTCCTTCCGGGEEECTTCCEEEE-----ECGGGHHHH
T ss_pred cCCCCChHHcCC-CCEEEEeCCCchHHHHHHHHHH-CCCEEecCCCCCccChhhhhcCCCceEEEE-----eCHHHHHHh
Confidence 356999999954 8999999987664 34544 665 233332211 035677788
Q ss_pred HhcCCeeEEEE
Q 047464 66 FESGDIAAAFL 76 (94)
Q Consensus 66 L~~g~i~A~v~ 76 (94)
| ++|||++.
T Consensus 162 l--~~VDaa~i 170 (241)
T 1xs5_A 162 F--DQVDGAVI 170 (241)
T ss_dssp G--GGSSEEEE
T ss_pred h--hccCEEEE
Confidence 8 58999987
No 71
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=91.50 E-value=0.27 Score=35.89 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCCChhHHHhC-----CCeeeecCCccHHHH----HH-HhhCCCCCCcccccCCCCCCChh-----hHHHHHhcCCeeEE
Q 047464 10 STVDIKTLQRR-----NAAVGCNGNSFIIRY----LI-NVLNFKPGSNKKINAKNGYNSIT-----SYPMAFESGDIAAA 74 (94)
Q Consensus 10 ~i~~i~dL~~~-----~~~VG~~~gSf~~~~----L~-~~~~~~~~~i~~~~~~~~~~s~~-----~~~~aL~~g~i~A~ 74 (94)
.|++++||++. |+.+||..|+....+ |+ +.+|++ .++... +.+ +...|+++|+++++
T Consensus 104 ~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~--d~~~v~------~~~~~~~a~~~~A~~~g~~~v~ 175 (298)
T 2rin_A 104 GIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLK--GFEVVE------SSEQGMLAQVARAEKSGDPIVF 175 (298)
T ss_dssp TCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCT--TCEEEC------CCHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCC--Cceecc------CCHHHHHHHHHHHHHCCCCEEE
Confidence 58899999832 799999998887543 43 246774 355444 322 34578899999988
Q ss_pred EE
Q 047464 75 FL 76 (94)
Q Consensus 75 v~ 76 (94)
..
T Consensus 176 ~~ 177 (298)
T 2rin_A 176 LG 177 (298)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 72
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=90.87 E-value=0.28 Score=35.11 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=34.4
Q ss_pred HHhCCCeeeec-CCccHHH----HHHHhhCCCCCCccc-ccCCCCCC-ChhhHHHHHhcCCeeEEEE
Q 047464 17 LQRRNAAVGCN-GNSFIIR----YLINVLNFKPGSNKK-INAKNGYN-SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 17 L~~~~~~VG~~-~gSf~~~----~L~~~~~~~~~~i~~-~~~~~~~~-s~~~~~~aL~~g~i~A~v~ 76 (94)
|+ |++||+. .||+..- +|++ .|+ .+.. |- . ++.+...||.+|+|||++.
T Consensus 94 Lk--GK~Iav~~~gs~~~~ll~~~L~~-~Gl---dv~~~~~-----~~~~~~~~~al~~G~vDa~~~ 149 (283)
T 3hn0_A 94 LK--EPALYVFGNGTTPDILTRYYLGR-QRL---DYPLNYA-----FNTAGEITQGILAGKVNRAVL 149 (283)
T ss_dssp CC--SCCEECSSTTSHHHHHHHHHHHH-HTC---CCCEECS-----CCSHHHHHHHHHHTSCSEEEE
T ss_pred CC--CCEEEecCCCCcHHHHHHHHHHH-cCC---ceEEEEc-----cCCHHHHHHHHHcCCCCEEEe
Confidence 77 8999985 6776543 3444 677 2222 32 1 3899999999999999987
No 73
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=90.03 E-value=0.33 Score=36.09 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=43.0
Q ss_pred CCCCChhHHHhCCCeeee-cCC-ccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 9 PSTVDIKTLQRRNAAVGC-NGN-SFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~-~~g-Sf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|++++||+ |.+|-+ ..| ....++++. +|.. ....+ ..|.+.||+.|-||+...
T Consensus 145 kpI~s~~Dlk--GlKiR~~~~~s~~~~~~~~a-lGa~---pv~m~-------~~Evy~ALq~GvvDg~e~ 201 (328)
T 3u65_B 145 APYASLGQLK--KQTIALSSLDSSVLGTCFRI-CGFD---IKDAP-------NARLAPLLKAGSIDGFLS 201 (328)
T ss_dssp SCCSSHHHHH--HSEEEECSTTHHHHHHHHHH-HTCE---EEECT-------TCCHHHHHHHTSCCEEEE
T ss_pred CCCCCHHHHC--CCEEEECCCCChHHHHHHHH-CCCe---eeecC-------HHHHHHHHHcCccceEec
Confidence 4699999999 699988 555 455677776 9984 44444 567889999999999987
No 74
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=89.45 E-value=0.25 Score=37.36 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=39.1
Q ss_pred CCeeeecC--CccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 21 NAAVGCNG--NSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 21 ~~~VG~~~--gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..+|+|++ |||+...+.+.++-+...+.++. |.++.++++++|++|..|.
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~------s~~~vf~aV~~g~~d~gVv 57 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCT------NVNTALERVRAGEADAAMV 57 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEES------SHHHHHHHHHTTSCSEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecC------CHHHHHHHHHcCCCCeeEE
Confidence 47899974 99999988773221234577888 9999999999999998776
No 75
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=88.64 E-value=0.89 Score=33.27 Aligned_cols=62 Identities=8% Similarity=0.080 Sum_probs=41.9
Q ss_pred CCCCCChhHHHhCCCeeeecCCccHH----HHHHHhhCC---C----------------CCCcccc-cCCCCCCChhhHH
Q 047464 8 QPSTVDIKTLQRRNAAVGCNGNSFII----RYLINVLNF---K----------------PGSNKKI-NAKNGYNSITSYP 63 (94)
Q Consensus 8 ~~~i~~i~dL~~~~~~VG~~~gSf~~----~~L~~~~~~---~----------------~~~i~~~-~~~~~~~s~~~~~ 63 (94)
+..+++++||+. |++|++-++.+-. ..|++ .|+ + +.+++ | - --...+..
T Consensus 90 S~kiksl~dL~~-Ga~IAIpnd~sn~~RaL~lL~~-~GLI~Lk~~~~~~~~t~~DI~~Npk~l~-~~~----el~aaql~ 162 (246)
T 4ef1_A 90 SKKYKSLQEIPD-GSTIYVSSSVSDWPRVLTILED-AGLITLKEGVDRTTATFDDIDKNTKKLK-FNH----ESDPAIMT 162 (246)
T ss_dssp CSSCSSGGGSCT-TCEEEEESCGGGHHHHHHHHHH-TTSEEECTTCCGGGCCGGGEEEETTCCE-EEE----EECGGGHH
T ss_pred cCCCCCHHHcCC-CCEEEeecCCchHHHHHHHHHH-CCCeeecCCCCcCcCCHhHHhcCCCccE-Eee----ecCHHHHH
Confidence 346899999996 8999998887642 34444 565 0 11111 1 0 01357789
Q ss_pred HHHhcCCeeEEEE
Q 047464 64 MAFESGDIAAAFL 76 (94)
Q Consensus 64 ~aL~~g~i~A~v~ 76 (94)
.+|.+|++||++-
T Consensus 163 ~al~dg~vDaavi 175 (246)
T 4ef1_A 163 TLYDNEEGAAVLI 175 (246)
T ss_dssp HHHHTTCSSEEEE
T ss_pred HHhccccccEEEE
Confidence 9999999999987
No 76
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=88.40 E-value=0.39 Score=35.37 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=21.5
Q ss_pred CCCCChhHHHhCCCeeeecCCccHHHHH
Q 047464 9 PSTVDIKTLQRRNAAVGCNGNSFIIRYL 36 (94)
Q Consensus 9 ~~i~~i~dL~~~~~~VG~~~gSf~~~~L 36 (94)
+.|++++||++ |++||+.++++...++
T Consensus 126 ~~iksl~DL~~-Gk~IAip~~~s~~~~~ 152 (295)
T 1p99_A 126 DKIKDVKKVKD-GAKVVIPNDVSNQARA 152 (295)
T ss_dssp SSCSCGGGCCT-TCEEEEECSHHHHHHH
T ss_pred CCCCChHHcCC-CCEEEecCCCcHHHHH
Confidence 56999999944 8999999988765443
No 77
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=87.73 E-value=0.83 Score=33.06 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=39.9
Q ss_pred CCCChhHHHhC-----CCeeeecCCccHH----HHHHHhhCCCCCCcccccCCCCCCChh----hHHHHHhcCCeeEEEE
Q 047464 10 STVDIKTLQRR-----NAAVGCNGNSFII----RYLINVLNFKPGSNKKINAKNGYNSIT----SYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~~-----~~~VG~~~gSf~~----~~L~~~~~~~~~~i~~~~~~~~~~s~~----~~~~aL~~g~i~A~v~ 76 (94)
.|++++||++. ++.+|+..|+... ..++. +|++ ..++... -+.. +...|+++|+++++..
T Consensus 109 ~i~sisDL~~~~~~f~~~~~g~~~G~~~~~~~~~~l~~-yGL~-~~~~~v~-----~s~~~m~~~l~~A~~~g~~~v~~~ 181 (280)
T 3tmg_A 109 PISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQALNY-YGLS-KEYELVP-----SSESVMLASLDSSIKRNEWILVPL 181 (280)
T ss_dssp CCCBGGGGTTCGGGGTTEEECCSTTCHHHHHHHHHHHH-TTCT-TTSEEEC-----CCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCCCHHHHHhhHHHcCCeEEecCCCchhHHHHHHHHHh-cCCC-CceEEEe-----CCHHHHHHHHHHHHHCCCCEEEEE
Confidence 58999999852 2469999997643 34444 8885 3355433 0222 3358999999998777
No 78
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=86.77 E-value=0.44 Score=31.14 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=38.8
Q ss_pred ccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 30 SFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 30 Sf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.....+|.. .|++.+++....|.+.....+.+-++|++|...||+.
T Consensus 44 ~~~~~~L~~-~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~ 89 (119)
T 1ofu_X 44 SLTHEWLRR-AGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 89 (119)
T ss_dssp TSCHHHHHH-TTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCHHHHHH-cCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEE
Confidence 344678888 9999999998887777777788889999999999997
No 79
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=86.14 E-value=1.1 Score=33.18 Aligned_cols=49 Identities=6% Similarity=-0.036 Sum_probs=38.8
Q ss_pred Ceeeec--CCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCN--GNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~--~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|+|+ .|||+...+.+.++-....+..+. |.++.++++++|++|..|.
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~------s~~~v~~aV~~g~~d~gVv 54 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKS------NLFEVIKAVADDDTSIGVV 54 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEES------SHHHHHHHHHHCSSEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcC------CHHHHHHHHHcCCCCEEEE
Confidence 578995 699999988874432112278899 9999999999999998876
No 80
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=83.45 E-value=1.5 Score=32.64 Aligned_cols=45 Identities=9% Similarity=-0.046 Sum_probs=38.6
Q ss_pred CCeeeec--CCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 21 NAAVGCN--GNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 21 ~~~VG~~--~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..+|+|+ .|||+.....+. | .+.++. |.++.++++++|++|..|.
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~--f---~~~p~~------s~~~vf~aV~~g~~d~gVv 52 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRF--G---EPLPCE------SFDDVFSAVTEQKADYAVI 52 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHH--S---EEEEES------CHHHHHHHHHTTSCSEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHH--h---HhCcCC------CHHHHHHHHHCCCCCEEEE
Confidence 3579996 799999988873 3 578899 9999999999999998887
No 81
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=83.25 E-value=1.1 Score=32.97 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=36.1
Q ss_pred CeeeecCCccH------HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFI------IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~------~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..+... ..++++ .|++ -.++.|+ +......||.+|+|||.++
T Consensus 13 ikVG~~~~p~~~il~~v~~~~~k-~Gi~-veiv~F~------Dy~~pN~AL~~G~iDaN~f 65 (252)
T 4ib2_A 13 IKVAASATPHAEILEQAKSILKK-EGYQ-LEVTVFD------DYVQPNEVVESGEFDANYF 65 (252)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHH-TTCE-EEEEECS------SSSHHHHHHHTTSSSEEEE
T ss_pred EEEEEcCCChHHHHHHHHHHHHh-cCCe-EEEEEec------ChhhHHHHHHcCCcCeeec
Confidence 68999888643 345655 6774 3477788 8888889999999999887
No 82
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=82.76 E-value=0.69 Score=33.05 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=39.5
Q ss_pred CCCChhHHHh--CCCeeeecCCccHHH----HHHHhh-CCCCCCcccccCCCCCCChh----hHHHHHhcCCeeEEEE
Q 047464 10 STVDIKTLQR--RNAAVGCNGNSFIIR----YLINVL-NFKPGSNKKINAKNGYNSIT----SYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~--~~~~VG~~~gSf~~~----~L~~~~-~~~~~~i~~~~~~~~~~s~~----~~~~aL~~g~i~A~v~ 76 (94)
.|++++||+. .|+.+||..|+.... .++. + |++ .++... .+.. +...|+++|+++++..
T Consensus 95 ~i~si~DL~~~~~g~~~g~~~G~~~~~~~~~~l~~-y~gL~--~~~~v~-----~s~~~m~~~l~~A~~~g~~~v~~~ 164 (256)
T 3l6g_A 95 NVNSIEDLTNQANKTITGIEPGAGVMAASEKTLNS-YDNLK--DWKLVP-----SSSGAMTVALGEAIKQHKDIVITG 164 (256)
T ss_dssp CCCBGGGCSSGGGGEEECCCTTCHHHHHHHHHHTT-CGGGT--TCEEEC-----CCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCCCHHHHHHhcCCeEEecCCCchhhHHHHHHHHh-cCCCC--CeEEec-----CCHHHHHHHHHHHHHCCCCEEEEe
Confidence 5889999963 268999999998754 3333 6 663 233322 0332 2348999999999888
No 83
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=80.28 E-value=0.4 Score=34.23 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=26.7
Q ss_pred ChhHHHhCCCeeeecCCccHHHHHHH----h-hCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 13 DIKTLQRRNAAVGCNGNSFIIRYLIN----V-LNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 13 ~i~dL~~~~~~VG~~~gSf~~~~L~~----~-~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
+++||+ |++||+..+|.+..+|.. . +|+++ ++.... +++.. ||. ++||++.
T Consensus 95 ~i~DLk--GKkIav~~~s~t~~~ll~~ll~~~~Gl~~-~~v~~~-------~~~~~-al~--~vDA~~~ 150 (291)
T 2nxo_A 95 PLDRLD--GARVALGSTSRTSVRLAQLLLSERFGVQP-DYYTCP-------PDLSL-MMQ--EADAAVL 150 (291)
T ss_dssp CTTSCS--SSEEEEETTCSHHHHHHHHHHHHTSCCCC-EEEEEC-------CCSSC-C-------CCEE
T ss_pred CHHHhC--CCEEEeCCCChHHHHHHHHHHHHhhCCCC-eEEEcC-------CCHHH-Hhh--cCCEEEE
Confidence 468999 899999987766554332 2 37753 222222 22333 555 7888653
No 84
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=76.96 E-value=2.7 Score=30.62 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=35.1
Q ss_pred CeeeecCCccHH------HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFII------RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~------~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..+.... ..+++..|++ -.++.|+ +..+-..||.+|+|||-++
T Consensus 5 ikVG~~~~p~~~i~~~~~~~l~~~~Gi~-veiv~F~------Dy~~pN~AL~~G~iDaN~f 58 (240)
T 3tqw_A 5 VRVGTIAGPETQLMEVAKQVALNRYGLH-VNIITFS------DYNTPNEALADGSVDANMF 58 (240)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHCCC-EEEEEES------CTTSHHHHHHTTSCSEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHhcCCe-EEEEEeC------ChHhHHHHHHcCCcCeecc
Confidence 578998876532 3344335774 3477788 7777788999999999987
No 85
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=76.82 E-value=1.7 Score=30.96 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=34.5
Q ss_pred CeeeecCCccH------HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFI------IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~------~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..+... ..++++ .|++ -.++.|+ +..+..+||.+|+||+.+.
T Consensus 5 i~vG~~~~~~~~~~~~~~~~~~~-~Gl~-ve~~~f~------d~~~~n~AL~~G~iD~n~f 57 (241)
T 1xs5_A 5 VGVGVLSEPHARLLEIAKEEVKK-QHIE-LRIVEFT------NYVALNEAVMRGDILMNFF 57 (241)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHT-TTEE-EEEEECS------CHHHHHHHHHHTSSSEEEE
T ss_pred EEEEecCCCcHHHHHHHHHHHHH-cCCe-EEEEEcC------ChHHHHHHHHcCCCCEecc
Confidence 46888877532 345555 4653 2477788 9999999999999999875
No 86
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=75.86 E-value=2.6 Score=30.65 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=35.3
Q ss_pred CeeeecCCccHH------HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFII------RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~------~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..+.... ..+++..|++ -.++.|+ +..+-..||.+|+|||-++
T Consensus 8 ikVG~~~~p~~~il~~~~~~l~~k~Gi~-veiv~F~------Dy~~pN~AL~~G~IDaN~f 61 (237)
T 3k2d_A 8 VKVGVMAGAEAQVAEVAAKVAKEKYGLD-VELVTFT------DYVTPNAALDDGSIDMNAF 61 (237)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHCCC-EEEEEES------CTTSHHHHHHHTSCSEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHhcCCE-EEEEEeC------ChHhHHHHHHcCCCCeecc
Confidence 578998875443 3344336774 3477788 7777888999999999988
No 87
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=74.63 E-value=2.3 Score=29.27 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=40.0
Q ss_pred ccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 30 SFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 30 Sf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.....+|.. .|++.+++.-..+++.......+-++|++|...||+.
T Consensus 86 ~l~~~~L~~-~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~ 131 (161)
T 1oft_A 86 SLTHEWLRR-AGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVS 131 (161)
T ss_dssp TSCHHHHHH-TTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHHHH-cCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEE
Confidence 345678888 9999999999888888888888889999999999997
No 88
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=73.28 E-value=2.8 Score=31.83 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=37.4
Q ss_pred CeeeecC--CccHHHHHHHhhC----C--CCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNG--NSFIIRYLINVLN----F--KPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~--gSf~~~~L~~~~~----~--~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|+|++ |||+...+.+.++ | +...+.++. |.++.++++++|. |..|.
T Consensus 7 ~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~------s~~~vf~aV~~g~-d~gVV 62 (329)
T 3luy_A 7 RKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMD------DVPQILDAAQHGD-GWGIV 62 (329)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEES------SHHHHHHHHHHTS-SEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCC------CHHHHHHHHHcCC-CEEEE
Confidence 5799965 9999887776321 2 234577888 9999999999999 98876
No 89
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=73.12 E-value=2.3 Score=31.08 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=34.8
Q ss_pred CeeeecCCccHHH------HHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFIIR------YLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~~------~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..+....- .+.+..|++ -.++.|+ +..+-..||.+|+|||-++
T Consensus 9 ikVG~~~~p~~~il~~v~~~l~k~~Gi~-veiv~F~------Dy~~pN~AL~~G~IDaN~f 62 (245)
T 3up9_A 9 LTVGATPSPHAKILTYINDNLAADAGIK-LDIVEYT------DYVQPNTALNDGDLDANFY 62 (245)
T ss_dssp EEEEECTTTHHHHHHHHHHHTHHHHTEE-EEEEECS------SSHHHHHHHHTTSCSEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHcCCe-EEEEEec------CcccHHHHHHcCCCceecc
Confidence 5799988865532 233324653 2477788 8888889999999999887
No 90
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=73.09 E-value=2.4 Score=30.91 Aligned_cols=47 Identities=23% Similarity=0.185 Sum_probs=34.4
Q ss_pred CeeeecCCccH------HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFI------IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~------~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..+... +.+|++ .|++ -.++.|+ +......||.+|+|||.+.
T Consensus 6 i~VG~~~~p~~~i~~~v~~~l~k-~Gi~-veiv~F~------dy~~pN~AL~~G~iD~n~f 58 (246)
T 4ef1_A 6 LKVGASPVPHAEILEHVKPLLEK-EGVK-LEVTTYT------DYVLPNKALESGDIDANYF 58 (246)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHH-TTEE-EEEEECS------SSSHHHHHHHHTSCSEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHh-cCCE-EEEEEeC------CchhHHHHHHCCCCCEEec
Confidence 47888877543 344555 5663 3467788 7777788999999999987
No 91
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=72.80 E-value=3.5 Score=31.00 Aligned_cols=55 Identities=16% Similarity=0.012 Sum_probs=44.9
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
...++++|. |++|++--=-.+++|+.+ .|++-.-++.+. ++|- |-.-|-.||+|+
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~~-~gi~~~ii~l~G------svE~---aP~~GlADaIvD 169 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLDQ-KGISFKSCLLNG------SVEV---APRAGLADAICD 169 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHHH-HTCCCEEEECSS------CTTH---HHHTTSCSEEEE
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHHH-cCCcEEEEECCC------ceee---ccCCCccceEEe
Confidence 356788887 799999888899999988 899765677788 8886 445788999999
No 92
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=72.34 E-value=2.6 Score=31.41 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=35.2
Q ss_pred CeeeecCCccHH-------HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFII-------RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~-------~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..+.... ..+++ .|++ -.++.|+ +......||.+|+|||-++
T Consensus 25 IkVG~~~~p~~~il~~~~k~~l~k-~Gi~-veiv~F~------Dy~~pN~AL~~G~IDaN~f 78 (275)
T 3gxa_A 25 IVFGTTVGDFGDMVKEQIQPELEK-KGYT-VKLVEFT------DYVRPNLALAEGELDINVF 78 (275)
T ss_dssp EEEEEETTHHHHHHHHTHHHHHHT-TTCE-EEEEEES------SSSHHHHHHHHTSCSEEEE
T ss_pred EEEEEeCCChHHHHHHHHHHHHHH-cCCe-EEEEEeC------CcHhHHHHHHcCCCCeeec
Confidence 589999886443 34444 5763 3467788 8888889999999999987
No 93
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=70.28 E-value=3.1 Score=30.47 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=33.8
Q ss_pred CeeeecCCccHH-------HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFII-------RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~-------~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..|.... ..+++ .|++ -.++.|+ +...-..||.+|+|||-++
T Consensus 3 ikVG~~~~p~~~il~~~~k~~l~k-~Gi~-leiv~F~------Dy~~pN~AL~~G~iDaN~f 56 (245)
T 3ir1_A 3 IVFGTTVGDFGDMVKEQIQPELEK-KGYT-VKLVEFT------DYVRPNLALAEGELDINVF 56 (245)
T ss_dssp EEEEEETTHHHHHHHHTHHHHHHT-TTCE-EEEEEES------SSSHHHHHHHHTSCSEEEE
T ss_pred EEEEEcCCChHHHHHHHHHHHHHH-cCce-EEEEEeC------CcHhHHHHHHCCCcCeecc
Confidence 468888776433 34444 5663 2467788 7777788999999999987
No 94
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=67.89 E-value=4.2 Score=30.72 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=48.5
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecCCCCCh
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPRGSPLA 85 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkGSpL~ 85 (94)
.+.+++||. +++|++--=-.+++|+.+ .|++-.=++.+. ++|- |-.-|-.||+|+..--|+.|+
T Consensus 120 ~~~~~~~l~--~~RIATkYp~l~r~yf~~-~gi~~~Ii~l~G------svE~---aP~~GlADaIvDiVsTG~TLr 183 (304)
T 1nh8_A 120 RNWTTADLA--GMRIATAYPNLVRKDLAT-KGIEATVIRLDG------AVEI---SVQLGVADAIADVVGSGRTLS 183 (304)
T ss_dssp SCCCGGGGT--TCEEEESCHHHHHHHHHH-HTCCCEEEECSS------CCTH---HHHTTSCSEEEEEESSSHHHH
T ss_pred CcCChHHhC--CCEEEeCcHHHHHHHHHH-CCCeEEEEECCC------ceee---ccCCCcccEEEEEeCChHHHH
Confidence 566788997 699999888899999988 899744466677 8886 445788999999554554443
No 95
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=67.05 E-value=4.3 Score=28.81 Aligned_cols=48 Identities=17% Similarity=0.058 Sum_probs=34.4
Q ss_pred CeeeecCCccHHH---HHHHhhCCC---CCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFIIR---YLINVLNFK---PGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~~---~L~~~~~~~---~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||++.|..+.. ++++ ..+. .-.+..|. +.++..++|.+|++|..+.
T Consensus 7 irvg~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~------~~~~~~~al~~G~~D~~~~ 60 (283)
T 3hn0_A 7 IKVSVLRGPSVIAFADWLEN-PPIIDNKKVQVKVVD------SPDLAQALLIKQETDIAVL 60 (283)
T ss_dssp EEEEEESSTHHHHTHHHHHS-CCEETTEEEEEEEES------CHHHHHHHHHTTCCSEEEE
T ss_pred EEEEecCCCcHHHHHHHHhc-cccccCccEEEEEeC------CHHHHHHHHHCCCCCEEEE
Confidence 6899999976543 3333 2211 01356788 9999999999999999886
No 96
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=64.31 E-value=5.3 Score=26.20 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.4
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..++|.+|++|.+|.
T Consensus 45 ~~~~l~~~L~~g~iDl~i~ 63 (218)
T 2y7p_A 45 NAGNLKEDMESGAVDLALG 63 (218)
T ss_dssp CTTTHHHHHHHTSSCEEEE
T ss_pred CcccHHHHHhCCCceEEEe
Confidence 4567889999999999987
No 97
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=63.30 E-value=4.6 Score=30.22 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=48.7
Q ss_pred CCCChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecCCCCCh
Q 047464 10 STVDIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPRGSPLA 85 (94)
Q Consensus 10 ~i~~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkGSpL~ 85 (94)
.+.+++||.. +++|++--=-.+++|+.+ .|++-.=++.+. ++|- |-.-|-.||+|+..--|+.|+
T Consensus 105 ~~~~~~~l~~-~~RIATkyp~l~~~yf~~-~gi~~~ii~l~G------svE~---ap~~GlADaIvDivsTG~TLr 169 (289)
T 2vd3_A 105 TIRGPEDIPR-GAVIATEFPGITENYLRE-HGIDAEVVELTG------STEI---APFIGVADLITDLSSTGTTLR 169 (289)
T ss_dssp SCCSGGGCCT-TCEEEESCHHHHHHHHHH-TTCCCEEEECSS------CGGG---TTTTTSCSEEEEEESSTHHHH
T ss_pred CCCCHHHhcC-CCEEEeCcHHHHHHHHHH-cCCcEEEEECCC------ceee---ccCCCcccEEEEEeCChHHHH
Confidence 4667888832 799999988899999988 899754466677 8886 456788999999444444443
No 98
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=62.51 E-value=5.7 Score=28.99 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=34.1
Q ss_pred CeeeecCCcc------HHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSF------IIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf------~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+. +.. ++.|+++ .|++ -+++.|+ +..+..+||.+|+||+.+.
T Consensus 41 i~IG~~-~~~~~~~~~~~~~~~~-~G~~-Ve~~~f~------~~~~~~~AL~~G~iD~~~~ 92 (295)
T 1p99_A 41 VTIGVA-SNDTKAWEKVKELAKK-DDID-VEIKHFS------DYNLPNKALNDGDIDMNAF 92 (295)
T ss_dssp EEEEES-SSCCHHHHHHHHHHGG-GTCC-EEEEECS------STTSHHHHHHTTSSSEEEE
T ss_pred EEEEEe-CCcHHHHHHHHHHHHH-cCCe-EEEEEeC------ChHHHHHHHHcCCCCEEcc
Confidence 689998 543 2345656 5773 3566788 8888899999999999875
No 99
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=61.65 E-value=15 Score=26.60 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=39.7
Q ss_pred CCCChhHHHhC--CCeeeecCC------ccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 10 STVDIKTLQRR--NAAVGCNGN------SFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~~--~~~VG~~~g------Sf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+++|+||.+. ...+|...+ .-... |.+.+|++-..++..+ .....+|+++|+++++..
T Consensus 129 ~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~-l~~~Ygl~~~~~~~~d-------~g~~~~A~~~~~~~v~~~ 195 (282)
T 3o66_A 129 HLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEG-FKKEYGFDFGTVRPMQ-------IGLVYDALNTEKLDVALG 195 (282)
T ss_dssp TCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHH-HHHHHCCCCSEEEEEC-------GGGHHHHHHTTSCSEEEE
T ss_pred CCCCHHHHHhcccceEEecCcccccCchhHHHH-HHHHcCCCCccccccC-------HHHHHHHHHcCCCeEEEE
Confidence 58899999863 247887663 22233 4455888533444444 337889999999998887
No 100
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=59.87 E-value=5.2 Score=30.49 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=22.5
Q ss_pred ChhhHHHHHhcCCeeEEEEeec-----CCCCCh
Q 047464 58 SITSYPMAFESGDIAAAFLVFP-----RGSPLA 85 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~afp-----kGSpL~ 85 (94)
+.++..+||++|.|.|++|+|+ .++||.
T Consensus 272 de~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~ 304 (365)
T 4hy3_A 272 DFDALMAAVSSGHIVAASDVYPEEPLPLDHPVR 304 (365)
T ss_dssp CHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGG
T ss_pred CHHHHHHHHHcCCceEEeeCCCCCCCCCCChhh
Confidence 5788899999999999999774 456654
No 101
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=59.31 E-value=9.1 Score=25.01 Aligned_cols=19 Identities=5% Similarity=-0.104 Sum_probs=16.9
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..++|.+|++|.+|.
T Consensus 56 ~~~~~~~~l~~g~~Dl~i~ 74 (241)
T 3oxn_A 56 QHDRLSDQLTYEGADLAIC 74 (241)
T ss_dssp CGGGHHHHHHTSCCSEEEE
T ss_pred CcccHHHHHHcCCCCEEEe
Confidence 5677889999999999998
No 102
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=58.69 E-value=9.8 Score=24.91 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=34.1
Q ss_pred hHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCC-CChhhHHHHHhcCCeeEEEE
Q 047464 15 KTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGY-NSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 15 ~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~-~s~~~~~~aL~~g~i~A~v~ 76 (94)
..|...|..+=.-+|+ ..||++ .|++-..+.... |.+- .+..+..+.+++|+||.||.
T Consensus 44 ~~l~~lGf~i~AT~GT--a~~L~~-~Gi~v~~v~k~~-egg~~~~~~~i~d~i~~g~i~lVIn 102 (143)
T 2yvq_A 44 EQLHNEGFKLFATEAT--SDWLNA-NNVPATPVAWPS-QEGQNPSLSSIRKLIRDGSIDLVIN 102 (143)
T ss_dssp HHHHTTTCEEEEEHHH--HHHHHH-TTCCCEEECCGG-GC-----CBCHHHHHHTTSCCEEEE
T ss_pred HHHHHCCCEEEECchH--HHHHHH-cCCeEEEEEecc-CCCcccccccHHHHHHCCCceEEEE
Confidence 3455555554444444 568887 899644444333 1100 01145788899999999998
No 103
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=58.41 E-value=11 Score=24.40 Aligned_cols=51 Identities=6% Similarity=0.040 Sum_probs=29.7
Q ss_pred CCeeeecC---CccHHHHHHHhh-CCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 21 NAAVGCNG---NSFIIRYLINVL-NFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 21 ~~~VG~~~---gSf~~~~L~~~~-~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..+||+.. ..+....+..-. ..+.-++.... .+.++..+.|.+|++|.+|.
T Consensus 31 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~~~~-----~~~~~~~~~l~~g~~Dl~i~ 85 (238)
T 2hxr_A 31 SLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQE-----MSQEKIEDMLCRDELDVGIA 85 (238)
T ss_dssp CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEE-----CCHHHHHHHHHTTSCSEEEE
T ss_pred eEEEeechhhHHHHHHHHHHHHHHhCCCcEEEEEE-----CCHHHHHHHHHcCCCcEEEE
Confidence 36888864 344445544311 12222344333 14567778899999999886
No 104
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=56.55 E-value=24 Score=25.63 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=38.9
Q ss_pred CCCChhHHHhC--CCeeeecCC------ccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 10 STVDIKTLQRR--NAAVGCNGN------SFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~i~dL~~~--~~~VG~~~g------Sf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+++|+||.+. ...+|...+ .=... +.+.+|++-..++..+ .....+|+++|+++++..
T Consensus 130 ~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~-l~~~YGl~~~~~~~~~-------~g~~~~A~~~~~~~v~~~ 196 (284)
T 3r6u_A 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQD-FTKTYGMTFGGTYPMQ-------IGLVYDAVKSGKMDIVLA 196 (284)
T ss_dssp TCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHH-HHHHHCCCCSEEEECC-------GGGHHHHHHHTSCSEEEE
T ss_pred CCCCHHHHHhhhhceeeccCcccccCchhHHHH-HHHHcCCCcccccccC-------HHHHHHHHHcCCCeEEEE
Confidence 48899999863 246887653 22233 4455888533444444 335689999999998887
No 105
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=56.19 E-value=12 Score=27.57 Aligned_cols=51 Identities=6% Similarity=-0.080 Sum_probs=34.4
Q ss_pred CCCeeeecCCccHHHHHHHh----hCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE-eecCC
Q 047464 20 RNAAVGCNGNSFIIRYLINV----LNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL-VFPRG 81 (94)
Q Consensus 20 ~~~~VG~~~gSf~~~~L~~~----~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~-afpkG 81 (94)
.|++|||-+--++.+++.+. .| ..++ |. ...+.+++|.+|+ .|++. +|-+|
T Consensus 88 ~GkkIgvwrkGSaaDVl~R~ll~~~g---~eVv-y~------Dw~di~~ml~~Ge-sAVva~~~~~G 143 (244)
T 3mst_A 88 SSGRIYTLRKGTLADFNARILAYYDK---AQVI-NA------DGDTCIKMANEGY-SALVGNEISIG 143 (244)
T ss_dssp TSSEEEESSTTSHHHHHHHHHHHHHT---CEEE-EC------CHHHHHHHHHTTC-EEEEETTTCCC
T ss_pred CCCeEeccCCCcHHHHHHHHHHHHhC---CeEE-EC------CHHHHHHHHhCCC-cEEEeecccCc
Confidence 37999997766666655542 33 1333 33 6888999999999 77777 55344
No 106
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=55.85 E-value=9 Score=27.02 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=33.5
Q ss_pred CeeeecCCccHH------HHHHHhh-CCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFII------RYLINVL-NFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~------~~L~~~~-~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..++... .|+.+.+ |++ -.+..|+ +..+..++|.+|++|.++.
T Consensus 31 lrig~~~~~~p~~~a~~~g~~~~~~~g~~-v~~~~~~------~~~~~~~al~~G~~D~~~~ 85 (324)
T 3ksx_A 31 LRIGYQKAVSSLVLAKQHRLLEQRFPRTK-ITWVEFP------AGPQLLEALNVGSIDLGGA 85 (324)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHCTTSE-EEEEEES------SHHHHHHHHHTTSCSEEEE
T ss_pred EEEEecCCchhHHHHHhhCHHHHhcCCCc-eEEEECC------CHHHHHHHHHCCCCCEEee
Confidence 579999876422 2344422 442 2456677 8889999999999999866
No 107
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=55.17 E-value=22 Score=24.03 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=26.7
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhh-----HHHHHhcCCeeEEEE
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITS-----YPMAFESGDIAAAFL 76 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~-----~~~aL~~g~i~A~v~ 76 (94)
..+|.+..|++ +..+. +..+ ..+.+++|+||.+|.
T Consensus 49 a~~L~e~~Gl~---v~~v~------k~~eGG~p~I~d~I~~geIdlVIn 88 (152)
T 1b93_A 49 GNLISRATGMN---VNAML------SGPMGGDQQVGALISEGKIDVLIF 88 (152)
T ss_dssp HHHHHHHHCCC---CEEEC------CGGGTHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHhCce---eEEEE------ecCCCCCchHHHHHHCCCccEEEE
Confidence 37787768994 55555 5444 788999999999998
No 108
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=54.98 E-value=13 Score=24.05 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=34.1
Q ss_pred CCeeeecC---CccHHHHHHHhhCCCCCCccc---ccCCCCCCChhhHHHHHhcCCeeEEEEeecCC
Q 047464 21 NAAVGCNG---NSFIIRYLINVLNFKPGSNKK---INAKNGYNSITSYPMAFESGDIAAAFLVFPRG 81 (94)
Q Consensus 21 ~~~VG~~~---gSf~~~~L~~~~~~~~~~i~~---~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkG 81 (94)
+.+||++. +..+++++.. +.| +++. +. +.+++.++|.+|++++++. +|+|
T Consensus 10 ~~~vaVvd~D~s~~s~~l~~~-l~~---~~~~~~~~~------s~~ea~~~l~~g~~~~~l~-IP~~ 65 (156)
T 3cni_A 10 GQKVAIVREDTGTIAELAEKA-LGN---MVDIVYAGS------DLKEAEEAVKKEKAPAIIV-IPKG 65 (156)
T ss_dssp -CEEEEEECCCSHHHHHHHHH-HHT---SSEEEEEES------CHHHHHHHHHHHTCSEEEE-ECTT
T ss_pred CCcEEEEECCCCHHHHHHHHH-hcC---cEEEEecCC------CHHHHHHHHHcCCeeEEEE-ECcc
Confidence 47778754 4555666655 434 3333 36 8999999999999999886 5554
No 109
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=52.46 E-value=8.7 Score=24.40 Aligned_cols=19 Identities=5% Similarity=-0.218 Sum_probs=16.3
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 45 ~~~~~~~~l~~g~~Di~i~ 63 (222)
T 4ab5_A 45 FQADPVGLLLQHRADLAIV 63 (222)
T ss_dssp CCSCTHHHHHTTSCSEEEE
T ss_pred CHHHHHHHHHcCCcCEEEe
Confidence 4467788999999999998
No 110
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=52.32 E-value=10 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=16.8
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 41 ~~~~~~~~l~~g~~Dl~i~ 59 (219)
T 3jv9_A 41 YTHTLTESLKRGDVDAIIV 59 (219)
T ss_dssp CHHHHHHHHHHTSSSEEEE
T ss_pred CcHHHHHHHHcCCCCEEEE
Confidence 5678889999999999998
No 111
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=52.27 E-value=12 Score=27.28 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=27.5
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
++|.+.+|++ -++..+. +.++..++|.+|++|.++.
T Consensus 38 ~~L~k~lG~~-ve~~~~~------~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 38 QDMEKKLGVK-VNAFFAP------DYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp HHHHHHHTSC-EEEECCS------SHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHHCCC-EEEEecC------CHHHHHHHHHcCCCcEEEE
Confidence 4677778883 2344456 8889999999999999985
No 112
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=52.24 E-value=12 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=17.1
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 48 ~~~~~~~~l~~g~~Dl~i~ 66 (232)
T 3ho7_A 48 QTSRCLASLLSGEIDMAII 66 (232)
T ss_dssp CHHHHHHHHHHTSCSEEEE
T ss_pred CHHHHHHHHHcCCCCEEEE
Confidence 5678889999999999998
No 113
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=50.27 E-value=12 Score=24.03 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=16.6
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 42 ~~~~~~~~l~~g~~Dl~i~ 60 (219)
T 1i6a_A 42 QTHQLLAQLDSGKLDAVIL 60 (219)
T ss_dssp CHHHHHHHHHHTSCSEEEE
T ss_pred ChHHHHHHHHcCCeeEEEe
Confidence 5678889999999999987
No 114
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=50.16 E-value=6.7 Score=28.19 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 35 YLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 35 ~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
|.++ .|++ -.+..+. +..+..++|.+|++|..+.
T Consensus 32 ~f~e-~GLd-Vei~~~~------~~~~~~~al~sG~~D~g~~ 65 (342)
T 4esw_A 32 YFKD-ENLD-IAILEPS------NPSDVTELVGSGKVDMGLK 65 (342)
T ss_dssp HHHH-TTCE-EEEEEES------SGGGHHHHHHHTSSSEEEE
T ss_pred chHH-cCCe-EEEEeCC------ChHHHHHHHHcCCcCEEEe
Confidence 5555 6774 3466788 9999999999999998876
No 115
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=50.10 E-value=11 Score=27.15 Aligned_cols=36 Identities=3% Similarity=-0.009 Sum_probs=27.2
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
++|.+.+|++ -.+..+. +.++...+|.+|++|.++.
T Consensus 28 ~~l~k~lG~~-ve~~~~~------~~~~~i~al~~G~vDi~~~ 63 (310)
T 3n5l_A 28 KDMSQQTGYQ-VKAFFAP------DYAGIIQGMRFDKVDIAWY 63 (310)
T ss_dssp HHHHHHHSSE-EEEECCS------SHHHHHHHHHTTSCSEEEC
T ss_pred HHHHHHhCCC-EEEEeCC------CHHHHHHHHHcCCCCEEEE
Confidence 4677778883 2233456 8889999999999999975
No 116
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=49.79 E-value=11 Score=26.53 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=31.2
Q ss_pred CeeeecCCcc-------HHHHHHHhhCCCCCCccc-ccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSF-------IIRYLINVLNFKPGSNKK-INAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf-------~~~~L~~~~~~~~~~i~~-~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+...+- ...+|++ .|++- .++. +. +...+.+||.+|+||+.+.
T Consensus 8 i~ig~~~~~~~~~~~~~~~~~le~-~G~~V-e~~~~~g------~~~~~~~al~~G~iD~~~e 62 (275)
T 1sw5_A 8 VVIGSKPFNEQYILANMIAILLEE-NGYKA-EVKEGLG------GTLVNYEALKRNDIQLYVE 62 (275)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHHH-TTCCE-EECTTCC------SHHHHHHHHHHTSSSEEEE
T ss_pred EEEEcCCCcHHHHHHHHHHHHHHH-cCCcE-EEEeCCC------chHHHHHHHHcCCCcEEEe
Confidence 4566665431 1245555 57742 2343 66 7888999999999999984
No 117
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=49.20 E-value=37 Score=22.41 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=26.6
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChh-----hHHHHHhcCCeeEEEE
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSIT-----SYPMAFESGDIAAAFL 76 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~-----~~~~aL~~g~i~A~v~ 76 (94)
..+|.+..|++ +..+. +.. +..+.+++|+||.+|.
T Consensus 41 a~~L~e~~Gl~---v~~v~------k~~~eG~p~I~d~I~~geIdlVIn 80 (134)
T 2xw6_A 41 GRRIEEATGLT---VEKLL------SGPLGGDQQMGARVAEGRILAVIF 80 (134)
T ss_dssp HHHHHHHHCCC---CEECS------CGGGTHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhhCce---EEEEE------ecCCCCcchHHHHHHCCCccEEEE
Confidence 47787768994 55555 443 5788999999999998
No 118
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=49.20 E-value=29 Score=24.19 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhh-----HHHHHhcCCeeEEEE
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITS-----YPMAFESGDIAAAFL 76 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~-----~~~aL~~g~i~A~v~ 76 (94)
..+|.+..|++ +..+. +..+ ..+.+++|+||.+|.
T Consensus 65 a~~L~e~~Gl~---v~~v~------k~~eGG~pqI~d~I~~geIdlVIn 104 (178)
T 1vmd_A 65 GALLQEKLGLK---VHRLK------SGPLGGDQQIGAMIAEGKIDVLIF 104 (178)
T ss_dssp HHHHHHHHCCC---CEECS------CGGGTHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHHHHhCce---eEEEe------ecCCCCCchHHHHHHCCCccEEEE
Confidence 47787768994 55555 5444 788999999999998
No 119
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=48.13 E-value=18 Score=22.80 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=16.1
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 42 ~~~~l~~~l~~g~~Dl~i~ 60 (209)
T 2ql3_A 42 TQNRLRTQLEGGELDVAIV 60 (209)
T ss_dssp CHHHHHHHHHTTSCSEEEE
T ss_pred cHHHHHHHHHcCCccEEEE
Confidence 5567778999999999886
No 120
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=46.06 E-value=19 Score=23.31 Aligned_cols=60 Identities=17% Similarity=0.344 Sum_probs=39.1
Q ss_pred CChhHHHhCCCeeeecCCc--------cHHHHHHHhhCCCCCCcccccCCC---------CCCChhhHHHHHhcCCeeEE
Q 047464 12 VDIKTLQRRNAAVGCNGNS--------FIIRYLINVLNFKPGSNKKINAKN---------GYNSITSYPMAFESGDIAAA 74 (94)
Q Consensus 12 ~~i~dL~~~~~~VG~~~gS--------f~~~~L~~~~~~~~~~i~~~~~~~---------~~~s~~~~~~aL~~g~i~A~ 74 (94)
..++.|.++-+.|++++-| ....+|.+ .|+ ++-.++|+. -|.|+++.. ..+|.+
T Consensus 4 ~~l~~ll~~p~~IavIGas~~~g~~G~~~~~~L~~-~G~---~v~~vnp~~~g~~i~G~~~~~sl~el~-----~~~Dlv 74 (145)
T 2duw_A 4 NDIAGILTSTRTIALVGASDKPDRPSYRVMKYLLD-QGY---HVIPVSPKVAGKTLLGQQGYATLADVP-----EKVDMV 74 (145)
T ss_dssp CSHHHHHHHCCCEEEESCCSCTTSHHHHHHHHHHH-HTC---CEEEECSSSTTSEETTEECCSSTTTCS-----SCCSEE
T ss_pred HHHHHHHhCCCEEEEECcCCCCCChHHHHHHHHHH-CCC---EEEEeCCcccccccCCeeccCCHHHcC-----CCCCEE
Confidence 4466776545778887754 34566766 788 466677665 245666532 379999
Q ss_pred EEeecC
Q 047464 75 FLVFPR 80 (94)
Q Consensus 75 v~afpk 80 (94)
+.+.|.
T Consensus 75 ii~vp~ 80 (145)
T 2duw_A 75 DVFRNS 80 (145)
T ss_dssp ECCSCS
T ss_pred EEEeCH
Confidence 997773
No 121
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=44.90 E-value=19 Score=24.58 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=37.3
Q ss_pred CCChhHHHhCCCeeeecC------CccHHHHHHHhhCCC---CCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 11 TVDIKTLQRRNAAVGCNG------NSFIIRYLINVLNFK---PGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 11 i~~i~dL~~~~~~VG~~~------gSf~~~~L~~~~~~~---~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..++.+|.+ +.+|++.. |....++|+. +|+- ..++.... +..+..+.+.+|++|+.|-
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~~-~g~~~~l~~~~~~~~------~~~~~~~~v~~Ge~d~gi~ 173 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQK-LGAWDTLSPKLAPAE------DVRGALALVERNEAPLGIV 173 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHHH-TTCHHHHGGGEEEES------SHHHHHHHHHTTSSSEEEE
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHHH-cCCHHHhhhcEEecC------CHHHHHHHHHcCCCCEEEE
Confidence 356666664 46677653 2334556665 6651 12344445 7888899999999999887
No 122
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=43.99 E-value=14 Score=23.65 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=34.3
Q ss_pred ChhHHHhCCC-eeeecC-C-cc----HHHHHHHhhCCCC-----CCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 13 DIKTLQRRNA-AVGCNG-N-SF----IIRYLINVLNFKP-----GSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 13 ~i~dL~~~~~-~VG~~~-g-Sf----~~~~L~~~~~~~~-----~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
+++||.+.+. +++... + +. ...++.+ .|+.. .++...+ +.+...+.+.+|.+++.|.
T Consensus 95 ~~~dL~~~~~~~i~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~------~~~~~~~~v~~G~~~i~~~ 163 (231)
T 1atg_A 95 QGKVLAGNGWRHIAISNPQIAPYGLAGTQVLTH-LGLLDKLTAQERIVEAN------SVGQAHSQTASGAADLGFV 163 (231)
T ss_dssp TSGGGGSSSCSCEEEECTTTCHHHHHHHHHHHH-TTCHHHHHHTTCEEEES------SHHHHHHHHHTTSSSEEEE
T ss_pred chhhhccCCCCEEEecCCCCCchhHHHHHHHHH-CCCcccccccceEEecC------CHHHHHHHHHcCCCCEEEE
Confidence 6889985321 565432 2 32 3345555 66532 1333455 7888999999998766665
No 123
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=43.83 E-value=29 Score=24.76 Aligned_cols=61 Identities=15% Similarity=0.012 Sum_probs=46.3
Q ss_pred ChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecCCCCChH
Q 047464 13 DIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPRGSPLAL 86 (94)
Q Consensus 13 ~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkGSpL~~ 86 (94)
+++++ +++|++--=-.+++|+.+ .|++-.-++.+. ++|- |-.-|-.||+|+..--|+.|++
T Consensus 107 ~~~~~---~~RIATkyp~l~~~yf~~-~gi~~~ii~l~G------svE~---aP~~GlADaIvDivsTG~TLra 167 (214)
T 2vd2_A 107 DWSGV---APRIATKYPNVASSYFRE-QGEQVEIIKLNG------SIEL---APLIGLADRIVDIVSTGQTLKE 167 (214)
T ss_dssp CCCSS---SCEEEESCHHHHHHHHHH-HCCCCEEEECCS------CTTH---HHHTTSCSEEEEEECCSSSSCT
T ss_pred ChhhC---CcEEEECcHHHHHHHHHH-cCCcEEEEECCC------ceee---ccCCCCceEEEEEeCCHHHHHH
Confidence 45555 589999888889999988 899754466677 8886 4457899999996666766653
No 124
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=43.74 E-value=14 Score=26.88 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=33.7
Q ss_pred CeeeecCCccHH------HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFII------RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~~------~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+..|..+. ..|++ .|++ -.++.|+ +...-..||.+|+|||-++
T Consensus 8 i~vgat~~P~aeil~~vk~~l~k-~Gi~-leiv~F~------Dy~~pN~AL~~G~iDaN~f 60 (249)
T 4got_A 8 IVVAATKTPHAEILKEAEPLLKE-KGYT-LKVKVLS------DYKMYNKALADKEVDANYF 60 (249)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHT-TTCE-EEEECCS------STHHHHHHHHTTSCSEEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHHh-cCCe-EEEEEeC------CccchhHHHHcCCcceeec
Confidence 468888776543 33444 5663 2466788 7777788999999999987
No 125
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=42.61 E-value=28 Score=19.30 Aligned_cols=41 Identities=12% Similarity=-0.080 Sum_probs=29.0
Q ss_pred CCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcC
Q 047464 21 NAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESG 69 (94)
Q Consensus 21 ~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g 69 (94)
|...|+-. .-.+--.++.|++....+.|. |.+|+-+.|..+
T Consensus 11 G~~~GIy~--sW~ec~~qV~g~~ga~yK~F~------t~~eA~~~l~~~ 51 (53)
T 3bsu_A 11 GRKTGVFL--TWNECRAQVDRFPAARFKKFA------TEDEAWAFVRKS 51 (53)
T ss_dssp SSSCEEES--SHHHHHHHHTTCTTCEEEEES------SHHHHHHHHHC-
T ss_pred CCCCceEC--CHHHHHHHhcCCCCCccCCCC------CHHHHHHHHHhC
Confidence 34444444 223445667899999999999 999999888765
No 126
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=40.66 E-value=23 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=29.2
Q ss_pred CeeeecCC---ccHHHHHHHhhC-CCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGN---SFIIRYLINVLN-FKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~g---Sf~~~~L~~~~~-~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+... .+....+.+... .+.-++.... .+.++..+.|.+|++|.+|.
T Consensus 92 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~-----~~~~~~~~~l~~g~~Dlai~ 145 (312)
T 2h9b_A 92 IRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYE-----MGTKAQTEALKEGRIDAGFG 145 (312)
T ss_dssp EEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEE-----CCHHHHHHHHHTTSCSEEEE
T ss_pred EEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEe-----CCHHHHHHHHHcCCCCEEEE
Confidence 57887653 344455544111 2212333322 14577889999999999997
No 127
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=37.26 E-value=29 Score=23.70 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=31.9
Q ss_pred ChhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHh
Q 047464 13 DIKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFE 67 (94)
Q Consensus 13 ~i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~ 67 (94)
-+++|++.|..| +++|+.+.++.++ +|++ .+-.+. +.+...+||.
T Consensus 134 ~i~~l~~~G~~v-vVG~~~~~~~A~~-~Gl~--~vli~s------g~eSI~~Ai~ 178 (196)
T 2q5c_A 134 LISKVKTENIKI-VVSGKTVTDEAIK-QGLY--GETINS------GEESLRRAIE 178 (196)
T ss_dssp HHHHHHHTTCCE-EEECHHHHHHHHH-TTCE--EEECCC------CHHHHHHHHH
T ss_pred HHHHHHHCCCeE-EECCHHHHHHHHH-cCCc--EEEEec------CHHHHHHHHH
Confidence 356788877665 7778899999988 9995 444455 5776666664
No 128
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=36.56 E-value=44 Score=19.74 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=25.8
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+..+. +.+++.+.+.....|.++.
T Consensus 25 ~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlii~ 57 (142)
T 3cg4_A 25 TILSD-AGF---HIISAD------SGGQCIDLLKKGFSGVVLL 57 (142)
T ss_dssp HHHHH-TTC---EEEEES------SHHHHHHHHHTCCCEEEEE
T ss_pred HHHHH-CCe---EEEEeC------CHHHHHHHHHhcCCCEEEE
Confidence 45554 566 577788 9999999999988998887
No 129
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=36.41 E-value=23 Score=25.12 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=40.7
Q ss_pred CCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecCCCCC
Q 047464 21 NAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPRGSPL 84 (94)
Q Consensus 21 ~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkGSpL 84 (94)
+++|++--=-.+++|+.+ .|++-.-++.+. ++|- |-.-|-.||+|+..--|+.|
T Consensus 108 ~~RIATkyp~l~~~yf~~-~gi~~~ii~l~G------svE~---ap~~GlAD~IvDivsTG~TL 161 (206)
T 1ve4_A 108 IRRVATKYPNFTARLLKE-RGWAADVVELSG------NIEL---AAVTGLADAVVDVVQTGATL 161 (206)
T ss_dssp CCEEEESCHHHHHHHHHH-TTCCCEEEECSS------CTHH---HHHTTSSSEEEEEESSSHHH
T ss_pred CCEEEECchHHHHHHHHH-CCCcEEEEECCC------ceee---ccCCCCceEEEEeccCHHHH
Confidence 588888887889999988 899755567777 8886 44578899999944444443
No 130
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=36.01 E-value=27 Score=22.51 Aligned_cols=19 Identities=5% Similarity=0.163 Sum_probs=16.4
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 51 ~~~~~~~~l~~g~~Dl~i~ 69 (228)
T 2fyi_A 51 TPQEIATLLQNGEADIGIA 69 (228)
T ss_dssp CHHHHHHHHHHTSCSEEEE
T ss_pred CHHHHHHHHHcCCccEEEE
Confidence 4578888999999999987
No 131
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=35.81 E-value=42 Score=24.11 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=31.3
Q ss_pred CChhHHHhCCCeeeecCCccHHHHHHHh----hCCCCCCcccccCCCCCCChh-hHHHHHhcCCeeEEEE
Q 047464 12 VDIKTLQRRNAAVGCNGNSFIIRYLINV----LNFKPGSNKKINAKNGYNSIT-SYPMAFESGDIAAAFL 76 (94)
Q Consensus 12 ~~i~dL~~~~~~VG~~~gSf~~~~L~~~----~~~~~~~i~~~~~~~~~~s~~-~~~~aL~~g~i~A~v~ 76 (94)
..++|| ++|++.++|.+..+|.+. .|+++ . |. ..+ +...+| .|++||++.
T Consensus 99 ~~i~~L----k~Va~~~~s~t~~~Ll~~lL~~~Gl~~---~-~~------~~~~~~~~~l-~~~~da~l~ 153 (301)
T 2i6e_A 99 CPLPEL----RRVALTSQSAMSVALLEVLLRQKGLSP---V-LE------RAEGTAESLL-AAGYDGVLR 153 (301)
T ss_dssp SCGGGC----CEEEECTTCHHHHHHHHHHHHHTTCCC---E-EE------ECCSCHHHHH-TTTCSEEEE
T ss_pred CCHHHc----CEEEECCCChHHHHHHHHHHHHCCCCc---E-EE------eCCchHHHHh-ccCcCEEEE
Confidence 345777 789999998887655542 36643 2 32 222 333344 689999887
No 132
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=35.23 E-value=35 Score=20.91 Aligned_cols=33 Identities=3% Similarity=-0.065 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+..+. +.+++.+.+.+...|++|.
T Consensus 25 ~~L~~-~g~---~v~~~~------~~~~al~~l~~~~~dlii~ 57 (154)
T 3gt7_A 25 HILEE-TGY---QTEHVR------NGREAVRFLSLTRPDLIIS 57 (154)
T ss_dssp HHHHT-TTC---EEEEES------SHHHHHHHHTTCCCSEEEE
T ss_pred HHHHH-CCC---EEEEeC------CHHHHHHHHHhCCCCEEEE
Confidence 44544 566 577788 9999999999999999888
No 133
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=35.20 E-value=28 Score=20.32 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..+|.. .|+ .+..+. +.+++.+.+.+...|.++.
T Consensus 20 ~~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlii~ 53 (127)
T 3i42_A 20 KELLEM-LGF---QADYVM------SGTDALHAMSTRGYDAVFI 53 (127)
T ss_dssp HHHHHH-TTE---EEEEES------SHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHH-cCC---CEEEEC------CHHHHHHHHHhcCCCEEEE
Confidence 345555 666 577788 9999999999889998887
No 134
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=34.18 E-value=37 Score=20.11 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=26.6
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.+ .|+ .+..+. +.+++.+.+.....|.++.
T Consensus 24 ~~l~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlvi~ 56 (140)
T 3grc_A 24 LMLEK-GGF---DSDMVH------SAAQALEQVARRPYAAMTV 56 (140)
T ss_dssp HHHHH-TTC---EEEEEC------SHHHHHHHHHHSCCSEEEE
T ss_pred HHHHH-CCC---eEEEEC------CHHHHHHHHHhCCCCEEEE
Confidence 45555 666 577788 9999999999999999888
No 135
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=34.00 E-value=48 Score=23.05 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=37.8
Q ss_pred CCCC--hhHHHhCCCeeeecCC------ccHHHHHHHhhCCC---CCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 10 STVD--IKTLQRRNAAVGCNGN------SFIIRYLINVLNFK---PGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 10 ~i~~--i~dL~~~~~~VG~~~g------Sf~~~~L~~~~~~~---~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.|++ +.+|.+.+.+|++-.- ....++|.. +|+- ..++..-. +..+....+.+|++|+.|-
T Consensus 119 ~i~~~dl~~l~~~~~~iai~dP~~~p~G~~a~~~l~~-~g~~~~l~~~~v~~~------~~~~~~~~v~~Gead~giv 189 (253)
T 3gzg_A 119 PRAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRK-LGQWDSVSNRLAESE------SVRAALMLVSRGEAPLGIV 189 (253)
T ss_dssp TTSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHH-TTCHHHHTTSEEEES------SHHHHHHHHHTTSSSEEEE
T ss_pred CCCHHHHHHhhcCCCEEEEeCCCCCchHHHHHHHHHH-cCcHHHHhhceeecC------CHHHHHHHHHcCCCCEEEE
Confidence 3665 4444333467777542 233456655 6651 23454455 8888999999999999887
No 136
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=33.73 E-value=26 Score=26.50 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=14.3
Q ss_pred hHHHHHhcCCeeEEEE
Q 047464 61 SYPMAFESGDIAAAFL 76 (94)
Q Consensus 61 ~~~~aL~~g~i~A~v~ 76 (94)
|.-+||.+|+||.+|+
T Consensus 65 ELe~aLl~g~iDiAVH 80 (313)
T 1gtk_A 65 ELEVALLENRADIAVH 80 (313)
T ss_dssp HHHHHHHTTSCSEEEE
T ss_pred HHHHHHHcCCCcEEEe
Confidence 5568999999999999
No 137
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=33.23 E-value=33 Score=24.80 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=32.0
Q ss_pred CeeeecCCccH-------HHHHHHhhC--CCCCCcccccCCCCCCChhhHHHHHhcCCeeEEE
Q 047464 22 AAVGCNGNSFI-------IRYLINVLN--FKPGSNKKINAKNGYNSITSYPMAFESGDIAAAF 75 (94)
Q Consensus 22 ~~VG~~~gSf~-------~~~L~~~~~--~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v 75 (94)
..||...-+-. ...|++..| ++-.....+. +..-+..||.+|+||++.
T Consensus 11 I~ig~~~~te~~il~~i~~~~Le~~~G~~~~V~~~~~lg------~~~~~~~al~~G~iDv~~ 67 (282)
T 3o66_A 11 VKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLG------SSTIQHNALINGDANISG 67 (282)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHTTTSCCCEEEEEES------SHHHHHHHHHHTSCSEEE
T ss_pred EEEEcCCCcHHHHHHHHHHHHHHhccCCceeEEEEecCC------CcHHHHHHHHcCCCCEee
Confidence 56777764432 245555348 7533333366 777789999999999999
No 138
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Probab=33.15 E-value=19 Score=27.05 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=20.7
Q ss_pred ChhhHHHHHhcCCee-EEEEee-----cCCCCCh
Q 047464 58 SITSYPMAFESGDIA-AAFLVF-----PRGSPLA 85 (94)
Q Consensus 58 s~~~~~~aL~~g~i~-A~v~af-----pkGSpL~ 85 (94)
+.++..++|++|+|. |++|+| |.++||.
T Consensus 263 d~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~ 296 (364)
T 2j6i_A 263 VAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWR 296 (364)
T ss_dssp CHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHH
T ss_pred CHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHH
Confidence 567889999999998 556677 4455554
No 139
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=33.07 E-value=29 Score=25.10 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=32.1
Q ss_pred CeeeecCCccH-------HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEE
Q 047464 22 AAVGCNGNSFI-------IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAF 75 (94)
Q Consensus 22 ~~VG~~~gSf~-------~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v 75 (94)
..||...-+-. ...|++..|++-.....+. +..-+.+||.+|+||++.
T Consensus 14 I~ig~~~~te~~il~~i~~~~Le~~~G~~V~~~~~lg------~~~~~~~al~~G~iDv~~ 68 (284)
T 3r6u_A 14 IKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLG------SNAVQQQALMNGEIDIAA 68 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHSSCCEEEEEEEC------SHHHHHHHHHTTSCSEEE
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHhcCCCCeEEEecCC------chHHHHHHHHcCCCCEEe
Confidence 56777764432 2455553488533333466 667789999999999999
No 140
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=32.23 E-value=50 Score=19.18 Aligned_cols=45 Identities=2% Similarity=-0.166 Sum_probs=31.1
Q ss_pred CeeeecCCccH-----HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFI-----IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~-----~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|-+...... ..+|.+ .|+ .+..+. +.+++.+.+.+...|.++.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlvi~ 57 (130)
T 3eod_A 8 KQILIVEDEQVFRSLLDSWFSS-LGA---TTVLAA------DGVDALELLGGFTPDLMIC 57 (130)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH-TTC---EEEEES------CHHHHHHHHTTCCCSEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHh-CCc---eEEEeC------CHHHHHHHHhcCCCCEEEE
Confidence 45555544332 345555 566 566678 9999999999999999887
No 141
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=31.41 E-value=53 Score=19.02 Aligned_cols=33 Identities=9% Similarity=-0.116 Sum_probs=24.7
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+..+. +.+++.+.+.....|.++.
T Consensus 20 ~~L~~-~g~---~v~~~~------~~~~al~~~~~~~~dlii~ 52 (120)
T 3f6p_A 20 FNLRK-EGY---EVHCAH------DGNEAVEMVEELQPDLILL 52 (120)
T ss_dssp HHHHH-TTC---EEEEES------SHHHHHHHHHTTCCSEEEE
T ss_pred HHHHh-CCE---EEEEeC------CHHHHHHHHhhCCCCEEEE
Confidence 44544 566 566677 8888888888888888887
No 142
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=31.31 E-value=34 Score=23.72 Aligned_cols=50 Identities=12% Similarity=0.065 Sum_probs=29.0
Q ss_pred CeeeecCC---ccHHHHHHHhhC-CCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGN---SFIIRYLINVLN-FKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~g---Sf~~~~L~~~~~-~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+... .+....+.+... .+.-++.... .+.++..+.|.+|++|.+|.
T Consensus 92 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~-----~~~~~~~~~l~~g~~Dlai~ 145 (313)
T 2h98_A 92 LRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIE-----CGTKDQINALKQGKIDLGFG 145 (313)
T ss_dssp EEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEE-----CCHHHHHHHHHHTSCSEEEE
T ss_pred EEEEechHhHHhHHHHHHHHHHHHCCCeEEEEEe-----CChHHHHHHHHcCCCCEEEE
Confidence 57888643 334444443111 2212333322 14577889999999999987
No 143
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=30.29 E-value=39 Score=21.89 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=29.3
Q ss_pred CeeeecCC---ccHHHHHHHhh-CCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGN---SFIIRYLINVL-NFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~g---Sf~~~~L~~~~-~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+||+... .+....+.+.. .++.-++.... .+..+..+.|.+|++|.+|.
T Consensus 29 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~-----~~~~~~~~~L~~g~~Dl~i~ 82 (238)
T 3onm_A 29 LIIGASDDTADTLLPFLLNRVATLYPRLAIDVRV-----KRSPFIADMLSSGEVDLAIT 82 (238)
T ss_dssp EEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEE-----CCHHHHHHHHHHTSCSEEEE
T ss_pred EEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEE-----CCHHHHHHHHHCCCccEEEE
Confidence 47888543 34444444411 12222343322 15667889999999999998
No 144
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=30.28 E-value=31 Score=24.65 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=31.9
Q ss_pred CeeeecCCcc-------HHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEe
Q 047464 22 AAVGCNGNSF-------IIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLV 77 (94)
Q Consensus 22 ~~VG~~~gSf-------~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~a 77 (94)
.+||++.-+- ....|++ +|++- ..+.+. + .-+.+||.+|+||+...+
T Consensus 167 I~ig~~~w~e~~~~~~v~~~~Le~-~Gy~V-e~~~~~------~-~~~~~al~~G~iD~~~e~ 220 (268)
T 2b4l_A 167 INLAYVAWDSEIASTNVIGKVLED-LGYEV-TLTQVE------A-GPMWTAIATGSADASLSA 220 (268)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHH-HTCEE-EEEECC------T-THHHHHHHHTSSSEEEEE
T ss_pred eEEEccCccHHHHHHHHHHHHHHH-cCCce-EEEECC------h-HHHHHHHHCCCCeEEehh
Confidence 5678876443 1355665 88852 234466 6 667789999999998763
No 145
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=29.98 E-value=35 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 142 ~~~~~~~~l~~g~~Dl~i~ 160 (315)
T 1uth_A 142 NAGNLKEDMESGAVDLALG 160 (315)
T ss_dssp TSSCHHHHHHHTSCCEEEE
T ss_pred CcccHHHHHHCCCCCEEEe
Confidence 4467788999999999987
No 146
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=29.83 E-value=48 Score=19.77 Aligned_cols=33 Identities=9% Similarity=-0.098 Sum_probs=25.5
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+.... +.+++.+.+.....|.++.
T Consensus 22 ~~L~~-~g~---~v~~~~------~~~~al~~~~~~~~dlvl~ 54 (136)
T 3t6k_A 22 LVLRG-AGY---EVRRAA------SGEEALQQIYKNLPDALIC 54 (136)
T ss_dssp HHHHH-TTC---EEEEES------SHHHHHHHHHHSCCSEEEE
T ss_pred HHHHH-CCC---EEEEeC------CHHHHHHHHHhCCCCEEEE
Confidence 45555 566 566777 8999999898888998887
No 147
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=29.75 E-value=51 Score=19.50 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=24.6
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+..+. +.+++.+.+.....|.+|.
T Consensus 22 ~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlvi~ 54 (142)
T 2qxy_A 22 NALEK-DGF---NVIWAK------NEQEAFTFLRREKIDLVFV 54 (142)
T ss_dssp HHHGG-GTC---EEEEES------SHHHHHHHHTTSCCSEEEE
T ss_pred HHHHh-CCC---EEEEEC------CHHHHHHHHhccCCCEEEE
Confidence 44444 566 566777 8888888888888888876
No 148
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A*
Probab=29.69 E-value=57 Score=24.39 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=32.3
Q ss_pred cHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeec
Q 047464 31 FIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFP 79 (94)
Q Consensus 31 f~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afp 79 (94)
-+.+.|+. .||+ ++|.|+ .-.+.++||++=+|..++.+..
T Consensus 18 ~vv~llks-~gi~--~VRlYd------aD~~vL~Al~~sgi~v~vGV~n 57 (316)
T 3em5_A 18 EVIALYKK-SNIT--RMRIYD------PNQAVLEALRGSNIELILGVPN 57 (316)
T ss_dssp HHHHHHHH-TTCC--EEECSS------CCHHHHHHHTTCCCEEEEEECG
T ss_pred HHHHHHHH-cCCC--EEEEec------CCHHHHHHhhcCCceEEEeccc
Confidence 34567777 8895 899999 7788999999888999888543
No 149
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=29.64 E-value=23 Score=25.13 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=42.7
Q ss_pred hhHHHhCCCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecCCCCC
Q 047464 14 IKTLQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPRGSPL 84 (94)
Q Consensus 14 i~dL~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkGSpL 84 (94)
++++. +++|++--=-.+++|+.+ .|++-.=++.+. ++|- |-.-|-.||+|+..--|+.|
T Consensus 105 ~~~~~--~~RIATkyp~l~~~yf~~-~gi~~~ii~l~G------svE~---ap~~GlAD~IvDivsTG~TL 163 (208)
T 1z7m_E 105 KNFQR--HKRIASKYPRVTKKYFAQ-KQEDIEIIKLEG------SVEL---GPVVGLADAIVDIVETGNTL 163 (208)
T ss_dssp CCCSS--CEEEEESCHHHHHHHHHH-TTCCEEEEECSS------CTTH---HHHTTSCSEEEEEESSSHHH
T ss_pred chhcC--CCEEEECchHHHHHHHHH-cCCceEEEECCC------ceee---ccCCCcccEEEEEeCChHHH
Confidence 34454 689999888889999988 899643466677 8886 44578899999944444443
No 150
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=29.58 E-value=82 Score=23.12 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=34.5
Q ss_pred HHhCCCeeeecCCcc------------HHHHHHHhhCCCCCCcccccCCCCCC--C----hhhHHHHHhcCCeeEEEE
Q 047464 17 LQRRNAAVGCNGNSF------------IIRYLINVLNFKPGSNKKINAKNGYN--S----ITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 17 L~~~~~~VG~~~gSf------------~~~~L~~~~~~~~~~i~~~~~~~~~~--s----~~~~~~aL~~g~i~A~v~ 76 (94)
|+. |.+||.+.=|. +.++|++ +|++..--.......+|- + .+|..+||.+-+|+|++-
T Consensus 9 L~~-GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~ 84 (327)
T 4h1h_A 9 LKQ-GDEIRIIAPSRSIGIMADNQVEIAVNRLTD-MGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILT 84 (327)
T ss_dssp CCT-TCEEEEECSSSCGGGSCHHHHHHHHHHHHH-TTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCC-CCEEEEEeCCCCcCccCHHHHHHHHHHHHh-CCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 565 89999986552 2356776 888421111111112222 2 346677888999999997
No 151
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=29.37 E-value=76 Score=18.52 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=26.1
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCC-eeEEEE
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGD-IAAAFL 76 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~-i~A~v~ 76 (94)
..+|.+ .|+ .+..+. +.+++...+.... .|.+|.
T Consensus 24 ~~~L~~-~g~---~v~~~~------~~~~a~~~~~~~~~~dlvi~ 58 (136)
T 3hdv_A 24 ILYLKS-RGI---DAVGAD------GAEEARLYLHYQKRIGLMIT 58 (136)
T ss_dssp HHHHHH-TTC---CEEEES------SHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHH-cCc---eEEEeC------CHHHHHHHHHhCCCCcEEEE
Confidence 345555 677 577788 8999998888777 998887
No 152
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=28.70 E-value=54 Score=19.05 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=25.4
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.+ .|+ .+..+. +.+++.+.+.....|.++.
T Consensus 24 ~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlii~ 56 (132)
T 3lte_A 24 RVLKR-DHW---QVEIAH------NGFDAGIKLSTFEPAIMTL 56 (132)
T ss_dssp HHHHH-TTC---EEEEES------SHHHHHHHHHHTCCSEEEE
T ss_pred HHHHH-CCc---EEEEeC------CHHHHHHHHHhcCCCEEEE
Confidence 45554 566 577788 8999999998888888887
No 153
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=28.58 E-value=97 Score=19.35 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=31.6
Q ss_pred cHHHHHHHhhCCCCCCc-ccccCCCCCCChhhHHHHHhcCCeeEEEE--eecCCC
Q 047464 31 FIIRYLINVLNFKPGSN-KKINAKNGYNSITSYPMAFESGDIAAAFL--VFPRGS 82 (94)
Q Consensus 31 f~~~~L~~~~~~~~~~i-~~~~~~~~~~s~~~~~~aL~~g~i~A~v~--afpkGS 82 (94)
....+|.+ +|+ .+ .... |.+++++.+++...|.++. -+|..+
T Consensus 23 ~l~~~L~~-~G~---~v~~~a~------~g~eAl~~~~~~~~DlvllDi~mP~~~ 67 (123)
T 2lpm_A 23 LIEDTLCE-LGH---EVAATAS------RMQEALDIARKGQFDIAIIDVNLDGEP 67 (123)
T ss_dssp HHHHHHHH-HCC---CCCBCSC------CHHHHHHHHHHCCSSEEEECSSSSSCC
T ss_pred HHHHHHHH-CCC---EEEEEEC------CHHHHHHHHHhCCCCEEEEecCCCCCC
Confidence 34567776 888 44 3567 8999999999999999998 555444
No 154
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=28.35 E-value=55 Score=19.07 Aligned_cols=33 Identities=6% Similarity=-0.178 Sum_probs=24.9
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+..+. +.+++.+.+.....|.++.
T Consensus 20 ~~l~~-~g~---~v~~~~------~~~~al~~l~~~~~dlvll 52 (122)
T 3gl9_A 20 FNLKK-EGY---EVIEAE------NGQIALEKLSEFTPDLIVL 52 (122)
T ss_dssp HHHHH-TTC---EEEEES------SHHHHHHHHTTBCCSEEEE
T ss_pred HHHHH-CCc---EEEEeC------CHHHHHHHHHhcCCCEEEE
Confidence 44544 566 566777 8888888888888888887
No 155
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A
Probab=28.33 E-value=62 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecC
Q 047464 32 IIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPR 80 (94)
Q Consensus 32 ~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpk 80 (94)
+.+.|+. .||+ ++|.|+ .-++.+.||++-+|..++.+...
T Consensus 20 Vv~llks-~gi~--~VRlY~------~D~~vL~Al~~sgi~V~lGV~n~ 59 (323)
T 3ur8_A 20 VIKLYNA-NNIK--KMRIYY------PHTNVFNALKGSNIEIILDVPNQ 59 (323)
T ss_dssp HHHHHHH-TTCC--EEEESS------CCHHHHHHHTTCCCEEEEEECGG
T ss_pred HHHHHHh-CCCC--eEEecC------CCHHHHHHHHhcCCeEEEecccc
Confidence 3466766 7895 899999 77899999999899999986543
No 156
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=28.08 E-value=51 Score=19.30 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.1
Q ss_pred CcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 46 SNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 46 ~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+..+. +.+++.+.+.....|.++.
T Consensus 29 ~v~~~~------~~~~a~~~l~~~~~dlvi~ 53 (140)
T 2qr3_A 29 KVITLS------SPVSLSTVLREENPEVVLL 53 (140)
T ss_dssp EEEEEC------CHHHHHHHHHHSCEEEEEE
T ss_pred EEEEeC------CHHHHHHHHHcCCCCEEEE
Confidence 566777 8999999999888998887
No 157
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=27.93 E-value=45 Score=25.83 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=19.6
Q ss_pred ChhhHHHHHhcCCee-EEEEeecCC
Q 047464 58 SITSYPMAFESGDIA-AAFLVFPRG 81 (94)
Q Consensus 58 s~~~~~~aL~~g~i~-A~v~afpkG 81 (94)
+.++..+||++|+|. |+.|+|+.-
T Consensus 250 d~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 250 DLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp CHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hHHHHHHHHHcCCccEEEeCCCCCC
Confidence 578889999999997 677788763
No 158
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=26.91 E-value=59 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=16.1
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 130 ~~~~~~~~l~~g~~Dlai~ 148 (324)
T 1al3_A 130 SPTQIAEAVSKGNADFAIA 148 (324)
T ss_dssp CHHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHCCCceEEEE
Confidence 4567888999999999987
No 159
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=26.46 E-value=62 Score=19.02 Aligned_cols=50 Identities=8% Similarity=-0.025 Sum_probs=34.3
Q ss_pred CCeeeecCCccH-----HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecCCC
Q 047464 21 NAAVGCNGNSFI-----IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPRGS 82 (94)
Q Consensus 21 ~~~VG~~~gSf~-----~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkGS 82 (94)
+.+|-+...... ..+|.. .|+ .+..+. +.+++...+.....|.++ +|..+
T Consensus 18 ~~~ilivdd~~~~~~~l~~~L~~-~g~---~v~~~~------~~~~al~~l~~~~~dlvi--~~~~~ 72 (137)
T 2pln_A 18 SMRVLLIEKNSVLGGEIEKGLNV-KGF---MADVTE------SLEDGEYLMDIRNYDLVM--VSDKN 72 (137)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH-TTC---EEEEES------CHHHHHHHHHHSCCSEEE--ECSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCc---EEEEeC------CHHHHHHHHHcCCCCEEE--EcCcc
Confidence 456666555432 234544 566 577788 999999999999999998 65433
No 160
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=26.39 E-value=83 Score=18.60 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=24.7
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+. ..+..+. +.+++.+.+.....|.+|.
T Consensus 23 ~~L~~-~~~~-~~v~~~~------~~~~a~~~l~~~~~dlii~ 57 (144)
T 3kht_A 23 RVLDR-KDIH-CQLEFVD------NGAKALYQVQQAKYDLIIL 57 (144)
T ss_dssp HHHHH-TTCC-EEEEEES------SHHHHHHHHTTCCCSEEEE
T ss_pred HHHHh-cCCC-eeEEEEC------CHHHHHHHhhcCCCCEEEE
Confidence 44544 5551 1266677 8889888888888888887
No 161
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=26.22 E-value=43 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=21.1
Q ss_pred ChhhHHHHHhcCCee-EEEEeec----CCCCChH
Q 047464 58 SITSYPMAFESGDIA-AAFLVFP----RGSPLAL 86 (94)
Q Consensus 58 s~~~~~~aL~~g~i~-A~v~afp----kGSpL~~ 86 (94)
+.++..+||++|.|. |+.|+|. .++||..
T Consensus 269 de~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~ 302 (345)
T 4g2n_A 269 NDDALIEALRSKHLFAAGLDVFANEPAIDPRYRS 302 (345)
T ss_dssp CHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGG
T ss_pred CHHHHHHHHHhCCceEEEecCCCCCCCCCchHHh
Confidence 477889999999998 5666774 3466543
No 162
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=26.15 E-value=78 Score=18.24 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcC-CeeEEEE--eecC
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESG-DIAAAFL--VFPR 80 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g-~i~A~v~--afpk 80 (94)
.+|.. .|+ .+..+. +.+++.+.+... ..|.++. .+|.
T Consensus 23 ~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~~dlvi~d~~l~~ 62 (132)
T 2rdm_A 23 STLTD-AGF---LVTAVS------SGAKAIEMLKSGAAIDGVVTDIRFCQ 62 (132)
T ss_dssp HHHHH-TTC---EEEEES------SHHHHHHHHHTTCCCCEEEEESCCSS
T ss_pred HHHHH-cCC---EEEEEC------CHHHHHHHHHcCCCCCEEEEeeeCCC
Confidence 44544 566 566677 888988888887 7888887 4453
No 163
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=26.06 E-value=34 Score=22.87 Aligned_cols=19 Identities=16% Similarity=0.181 Sum_probs=16.1
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 128 ~~~~~~~~l~~g~~Dl~i~ 146 (294)
T 1ixc_A 128 TKDEQVEGLLAGTIHVGFS 146 (294)
T ss_dssp CHHHHHHHHHHTSCSEEEE
T ss_pred CHHHHHHHHHCCCccEEEE
Confidence 3567788999999999987
No 164
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=25.82 E-value=41 Score=26.01 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=14.5
Q ss_pred hhHHHHHhcCCeeEEEE
Q 047464 60 TSYPMAFESGDIAAAFL 76 (94)
Q Consensus 60 ~~~~~aL~~g~i~A~v~ 76 (94)
.|.-+||.+|+||.+|+
T Consensus 82 kELe~ALl~g~iDiAVH 98 (364)
T 3ecr_A 82 KELEHALEKNEVDLVVH 98 (364)
T ss_dssp HHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 44557899999999999
No 165
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=25.39 E-value=54 Score=21.97 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.2
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+..+..+.|.+|++|.+|.
T Consensus 132 ~~~~~~~~l~~g~~Dl~i~ 150 (306)
T 3fzv_A 132 EQQELVQGLTSGRFDLAFL 150 (306)
T ss_dssp CHHHHHHHHHHTSCSEEEE
T ss_pred CHHHHHHHHHCCCccEEEE
Confidence 4566788999999999987
No 166
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=25.32 E-value=41 Score=22.88 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=15.9
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.++..+.|.+|++|.+|.
T Consensus 129 ~~~~~~~~l~~g~~Dlai~ 147 (305)
T 3fxq_A 129 MYPAVSPQLRDGTLDFALT 147 (305)
T ss_dssp CTTTTHHHHHHTSSSEEEE
T ss_pred CHHHHHHHHHcCCCCEEEe
Confidence 3466778999999999997
No 167
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.91 E-value=48 Score=20.08 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=31.1
Q ss_pred CeeeecCCcc-HHHHHHHh---hCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSF-IIRYLINV---LNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf-~~~~L~~~---~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|-+....- ....+... .|+ .+..+. +.+++.+.+.....|.++.
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~---~v~~~~------~~~~a~~~l~~~~~dlvi~ 64 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPY---TLHFAR------DATQALQLLASREVDLVIS 64 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSC---EEEEES------SHHHHHHHHHHSCCSEEEE
T ss_pred ceEEEECCCHHHHHHHHHHhcccCc---EEEEEC------CHHHHHHHHHcCCCCEEEE
Confidence 4555555443 23333332 444 577788 9999999999999999988
No 168
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.75 E-value=50 Score=18.78 Aligned_cols=37 Identities=8% Similarity=-0.050 Sum_probs=27.3
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE--eec
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL--VFP 79 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~--afp 79 (94)
..+|.. .|+ ++..+. +.+++.+.+.....|.++. .+|
T Consensus 22 ~~~L~~-~g~---~v~~~~------~~~~a~~~~~~~~~dlvi~d~~~~ 60 (127)
T 2gkg_A 22 RSALEG-RGF---TVDETT------DGKGSVEQIRRDRPDLVVLAVDLS 60 (127)
T ss_dssp HHHHHH-HTC---EEEEEC------CHHHHHHHHHHHCCSEEEEESBCG
T ss_pred HHHHHh-cCc---eEEEec------CHHHHHHHHHhcCCCEEEEeCCCC
Confidence 345555 677 566777 8889888888888888876 444
No 169
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=24.56 E-value=58 Score=23.92 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=21.1
Q ss_pred ChhhHHHHHhcCCeeE-EEEee-----cCCCCCh
Q 047464 58 SITSYPMAFESGDIAA-AFLVF-----PRGSPLA 85 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A-~v~af-----pkGSpL~ 85 (94)
+.++..+||++|+|.+ ++++| |.++||.
T Consensus 235 d~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~ 268 (315)
T 3pp8_A 235 QEADLLAALDSGKLKGAMLDVFSQEPLPQESPLW 268 (315)
T ss_dssp CHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGG
T ss_pred hHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhh
Confidence 5788899999999985 55655 5567765
No 170
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=24.27 E-value=29 Score=24.92 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=39.4
Q ss_pred CCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeecCCCCC
Q 047464 21 NAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFPRGSPL 84 (94)
Q Consensus 21 ~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afpkGSpL 84 (94)
+++|++--=-.+++|+.+ .|++-.-++.+. ++|- |-.-|-.||+|+..--|+.|
T Consensus 103 ~~RIATkyp~l~r~yf~~-~Gi~~~Ii~l~G------svE~---aP~~GlADaIvDivsTG~TL 156 (219)
T 1o63_A 103 EKRIATKFPNVTQRYCES-KGWHCRIIPLKG------SVEL---APIAGLSDLIVDITETGRTL 156 (219)
T ss_dssp CEEEEESCHHHHHHHHHH-HTCCEEEEECSS------CTTH---HHHHTSCSEEEEEESSSHHH
T ss_pred CcEEEECcHHHHHHHHHH-CCCceEEEECCC------ceee---ccCCCCcceeEEeeccHHHH
Confidence 578888777789999988 899744466677 8886 34568899999944444443
No 171
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=24.26 E-value=71 Score=19.23 Aligned_cols=33 Identities=12% Similarity=0.056 Sum_probs=25.3
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+..+. +.+++...+.....|.++.
T Consensus 25 ~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlvi~ 57 (154)
T 2rjn_A 25 RLIKR-LGC---NIITFT------SPLDALEALKGTSVQLVIS 57 (154)
T ss_dssp HHHHT-TTC---EEEEES------CHHHHHHHHTTSCCSEEEE
T ss_pred HHHHH-cCC---eEEEeC------CHHHHHHHHhcCCCCEEEE
Confidence 34444 555 566778 9999999999888999887
No 172
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=24.10 E-value=92 Score=16.66 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=26.3
Q ss_pred CCeeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHH
Q 047464 21 NAAVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAF 66 (94)
Q Consensus 21 ~~~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL 66 (94)
|...|+-. .-.+--.++.|++....+.|. |.+|+-+-|
T Consensus 9 G~~~GIy~--sW~ec~~qV~g~~ga~yK~F~------t~~eA~~~l 46 (47)
T 1qhk_A 9 GRETGIYN--TWNECKNQVDGYGGAIYKKFN------SYEQAKSFL 46 (47)
T ss_dssp SSSCEEEE--EHHHHHHHSSSCSSCCCEEES------CHHHHHHHH
T ss_pred CCCCceEC--CHHHHHHHhcCCCCCccCCCC------CHHHHHHHh
Confidence 44445444 224445667899999999999 999876654
No 173
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.83 E-value=56 Score=18.11 Aligned_cols=33 Identities=6% Similarity=-0.063 Sum_probs=24.3
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ ++..+. +.+++.+.+.....|.++.
T Consensus 19 ~~l~~-~g~---~v~~~~------~~~~~~~~l~~~~~dlii~ 51 (119)
T 2j48_A 19 EMLTA-AGF---KVIWLV------DGSTALDQLDLLQPIVILM 51 (119)
T ss_dssp HHHHH-TTC---EEEEES------CHHHHHHHHHHHCCSEEEE
T ss_pred HHHHh-CCc---EEEEec------CHHHHHHHHHhcCCCEEEE
Confidence 44544 566 566777 8888888888888888776
No 174
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=23.81 E-value=39 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.2
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.+++++++++|++|+++.
T Consensus 44 dy~~ci~ai~~g~aD~~~l 62 (327)
T 1ryo_A 44 SYLDCIRAIAANEADAVTL 62 (327)
T ss_dssp SHHHHHHHHHTTSCCBEEE
T ss_pred CHHHHHHHHHcCCCcEEEe
Confidence 6778888888888888776
No 175
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.72 E-value=54 Score=19.78 Aligned_cols=46 Identities=11% Similarity=-0.021 Sum_probs=30.3
Q ss_pred CeeeecCCccH-HHHHHHh---hCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 22 AAVGCNGNSFI-IRYLINV---LNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 22 ~~VG~~~gSf~-~~~L~~~---~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|-++..... ...|... .|+ .+..+. +.+++.+.+.....|.++.
T Consensus 15 ~~iLivdd~~~~~~~l~~~L~~~g~---~v~~~~------~~~~al~~~~~~~~dlvl~ 64 (143)
T 3m6m_D 15 MRMLVADDHEANRMVLQRLLEKAGH---KVLCVN------GAEQVLDAMAEEDYDAVIV 64 (143)
T ss_dssp CEEEEECSSHHHHHHHHHHHHC--C---EEEEES------SHHHHHHHHHHSCCSEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCC---eEEEeC------CHHHHHHHHhcCCCCEEEE
Confidence 56666655433 3333332 455 566678 9999999999999999887
No 176
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=23.17 E-value=40 Score=25.21 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=15.0
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
|.+++++++++|++|+++.
T Consensus 41 s~~~Ci~aI~~g~aD~~~l 59 (332)
T 1iej_A 41 TYLDCIKAIANNEADAITL 59 (332)
T ss_dssp SHHHHHHHHHTTSCCBEEE
T ss_pred CHHHHHHHHHcCCCcEEEe
Confidence 6778888888888888776
No 177
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=22.79 E-value=95 Score=17.93 Aligned_cols=37 Identities=8% Similarity=-0.244 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
...+...+. ..-.+..+. +.+++.+.+.+...|.++.
T Consensus 17 ~~~l~~~l~-~~~~v~~~~------~~~~a~~~l~~~~~dlvi~ 53 (133)
T 3nhm_A 17 RETLRLLLS-GEFDCTTAA------DGASGLQQALAHPPDVLIS 53 (133)
T ss_dssp HHHHHHHHT-TTSEEEEES------SHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHh-CCcEEEEEC------CHHHHHHHHhcCCCCEEEE
Confidence 344444443 223566777 8889888888888888887
No 178
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.77 E-value=1.1e+02 Score=20.55 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=25.5
Q ss_pred HHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 35 YLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 35 ~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+.+ .|+ .+..++..++.....++.+.|.+.++|+++.
T Consensus 33 ~a~~-~g~---~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi 70 (287)
T 3bbl_A 33 EAGA-VNY---FVLPFPFSEDRSQIDIYRDLIRSGNVDGFVL 70 (287)
T ss_dssp HHHH-TTC---EEEECCCCSSTTCCHHHHHHHHTTCCSEEEE
T ss_pred HHHH-cCC---EEEEEeCCCchHHHHHHHHHHHcCCCCEEEE
Confidence 3444 666 4555554444445567888899999999987
No 179
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=22.57 E-value=71 Score=18.46 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=19.5
Q ss_pred CCeeeecCCccHHHHHHHhhCCCCCCcc
Q 047464 21 NAAVGCNGNSFIIRYLINVLNFKPGSNK 48 (94)
Q Consensus 21 ~~~VG~~~gSf~~~~L~~~~~~~~~~i~ 48 (94)
|+..-+ .++++.++|.. +++++..+.
T Consensus 7 G~~~e~-~~~Tl~~LL~~-l~~~~~~vA 32 (73)
T 2kl0_A 7 GEQREV-QSASVAALMTE-LDCTGGHFA 32 (73)
T ss_dssp TEEECC-CCSBHHHHHHH-TTCCSSSCE
T ss_pred CEEEEc-CCCcHHHHHHH-cCCCCCcEE
Confidence 566666 78899999988 998765543
No 180
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=22.55 E-value=50 Score=21.11 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=35.3
Q ss_pred hhHHHhCCCeeeecCCc--------cHHHHHHHhhCCCCCCcccccCC--C-------CCCChhhHHHHHhcCCeeEEEE
Q 047464 14 IKTLQRRNAAVGCNGNS--------FIIRYLINVLNFKPGSNKKINAK--N-------GYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 14 i~dL~~~~~~VG~~~gS--------f~~~~L~~~~~~~~~~i~~~~~~--~-------~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
++.|.++-+.|++++.| ....||.+ .|| ++-..+|+ . -|.|++|.. ..+|.++.
T Consensus 6 l~~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~-~G~---~v~~vnp~~~~~~i~G~~~~~sl~el~-----~~vDlavi 76 (140)
T 1iuk_A 6 LRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLRE-QGY---RVLPVNPRFQGEELFGEEAVASLLDLK-----EPVDILDV 76 (140)
T ss_dssp HHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHH-TTC---EEEEECGGGTTSEETTEECBSSGGGCC-----SCCSEEEE
T ss_pred HHHHHcCCCEEEEECCCCCCCChHHHHHHHHHH-CCC---EEEEeCCCcccCcCCCEEecCCHHHCC-----CCCCEEEE
Confidence 45566335778888764 45567776 777 35555555 1 245776633 37898888
Q ss_pred eecC
Q 047464 77 VFPR 80 (94)
Q Consensus 77 afpk 80 (94)
+.|.
T Consensus 77 ~vp~ 80 (140)
T 1iuk_A 77 FRPP 80 (140)
T ss_dssp CSCH
T ss_pred EeCH
Confidence 5544
No 181
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=22.26 E-value=43 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.038 Sum_probs=15.4
Q ss_pred ChhhHHHHHhcCCeeEEEE
Q 047464 58 SITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 58 s~~~~~~aL~~g~i~A~v~ 76 (94)
+.+++++++++|++|+++.
T Consensus 42 ~~~~ci~aI~~g~AD~~~l 60 (334)
T 1h45_A 42 SPIQCIQAIAENRADAVTL 60 (334)
T ss_dssp SHHHHHHHHHTTSCCBEEE
T ss_pred CHHHHHHHHHcCCCCEEEe
Confidence 6778888888888888776
No 182
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=22.22 E-value=46 Score=23.70 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=32.8
Q ss_pred HHhCCCeeeecCCccHHHHHHHhhCCCCCCccc-ccCCCCCCChhhHHHHHhc-----------CCeeEEEE
Q 047464 17 LQRRNAAVGCNGNSFIIRYLINVLNFKPGSNKK-INAKNGYNSITSYPMAFES-----------GDIAAAFL 76 (94)
Q Consensus 17 L~~~~~~VG~~~gSf~~~~L~~~~~~~~~~i~~-~~~~~~~~s~~~~~~aL~~-----------g~i~A~v~ 76 (94)
+.+.|..||.-.||++..+++. ++-...+++. .+ |-....+.+++ ..+|-+|+
T Consensus 23 ~V~~g~~IglgsGST~~~~i~~-L~~~~~~itv~Vt------nS~~~a~~l~~~gi~l~~l~~~~~iD~afd 87 (224)
T 3kwm_A 23 SITTEITLGVGTGSTVGFLIEE-LVNYRDKIKTVVS------SSEDSTRKLKALGFDVVDLNYAGEIDLYID 87 (224)
T ss_dssp TCCSSEEEEECCSHHHHHHHHH-GGGCTTTEEEEEE------SCHHHHHHHHHTTCCBCCHHHHCSEEEEEE
T ss_pred hCCCCCEEEECCcHHHHHHHHH-HHhhcCceEEEEC------CcHHHHHHHHHcCCeEEecCccccccEEEE
Confidence 4456889999999999877766 5432125655 55 33333333332 35888887
No 183
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=22.20 E-value=56 Score=22.99 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=30.5
Q ss_pred eeeecCCccHHHHHHHhhCCCCCCcccccCCCCCCChhhHH---HHHhcCCeeEEEE
Q 047464 23 AVGCNGNSFIIRYLINVLNFKPGSNKKINAKNGYNSITSYP---MAFESGDIAAAFL 76 (94)
Q Consensus 23 ~VG~~~gSf~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~---~aL~~g~i~A~v~ 76 (94)
.||+.+=....+.+.+.+++ +++.|. |.+.+|.. +.++..+++++|+
T Consensus 111 vVg~~~~~~~~~~i~~ll~~---~i~~~~----~~~~ee~~~~i~~l~~~G~~vVVG 160 (225)
T 2pju_A 111 VVTYQETIPALVAFQKTFNL---RLDQRS----YITEEDARGQINELKANGTEAVVG 160 (225)
T ss_dssp EEEESSCCHHHHHHHHHHTC---CEEEEE----ESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCchhhhHHHHHHHHhCC---ceEEEE----eCCHHHHHHHHHHHHHCCCCEEEC
Confidence 34555545556777888888 455433 22766554 5556788999999
No 184
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=22.11 E-value=54 Score=20.31 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHhCCCeeeecCCccHHHHHHHhhCC
Q 047464 17 LQRRNAAVGCNGNSFIIRYLINVLNF 42 (94)
Q Consensus 17 L~~~~~~VG~~~gSf~~~~L~~~~~~ 42 (94)
|..++...++...+.+.+||.. +|+
T Consensus 14 ~~~~~~~m~~~~~~~V~~WL~~-lgL 38 (100)
T 2kg5_A 14 LVPRGSHMAAPQDLDIAVWLAT-VHL 38 (100)
T ss_dssp ------CCSCCTTCBHHHHHGG-GTC
T ss_pred cccCccccCCCCcChHHHHHHH-CCC
Confidence 4445566777777889999988 655
No 185
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.00 E-value=98 Score=18.28 Aligned_cols=38 Identities=3% Similarity=-0.127 Sum_probs=27.3
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhc-CCeeEEEE--eecC
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFES-GDIAAAFL--VFPR 80 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~-g~i~A~v~--afpk 80 (94)
..+|.. .|+ .+..+. +.+++.+.+.+ ...|.+|. .+|.
T Consensus 22 ~~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~~dlvi~D~~l~~ 62 (140)
T 3h5i_A 22 ANILNK-YGY---TVEIAL------TGEAAVEKVSGGWYPDLILMDIELGE 62 (140)
T ss_dssp HHHHHH-TTC---EEEEES------SHHHHHHHHHTTCCCSEEEEESSCSS
T ss_pred HHHHHH-cCC---EEEEec------ChHHHHHHHhcCCCCCEEEEeccCCC
Confidence 345555 566 567788 88998888887 57888887 5554
No 186
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A
Probab=21.49 E-value=97 Score=22.86 Aligned_cols=38 Identities=11% Similarity=-0.015 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEee
Q 047464 32 IIRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVF 78 (94)
Q Consensus 32 ~~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~af 78 (94)
+.+.|+. .||+ ++|.|+ +-.+.++||++-+|..++.+.
T Consensus 18 vv~llk~-~~i~--~VRlY~------~d~~vL~A~~~tgi~v~lgv~ 55 (306)
T 1aq0_A 18 VVSMFKS-NGIK--SMRLYA------PNQAALQAVGGTGINVVVGAP 55 (306)
T ss_dssp HHHHHHH-HTCC--EEEESS------CCHHHHHHHTTSCCEEEEEEC
T ss_pred HHHHHHh-cCCC--EEEEcC------CCHHHHHHHHhcCCEEEEecc
Confidence 3456766 8885 899999 778999999998898888754
No 187
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3
Probab=21.37 E-value=86 Score=23.15 Aligned_cols=38 Identities=5% Similarity=-0.064 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEEeec
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFLVFP 79 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~afp 79 (94)
.+.|+. .||+ ++|.|+ +-.+.++||++-+|..++.+..
T Consensus 19 v~llk~-~~i~--~vRlY~------~d~~vL~A~~~tgi~v~lgv~n 56 (306)
T 1ghs_A 19 VQLYRS-KGIN--GMRIYF------ADGQALSALRNSGIGLILDIGN 56 (306)
T ss_dssp HHHHHH-HTCC--EEEESS------CCHHHHHHTTTSCCEEEEECCG
T ss_pred HHHHHh-cCCC--EEEEcC------CCHHHHHHHHhcCCEEEEeccc
Confidence 456766 8885 899999 7789999999888998888543
No 188
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=21.28 E-value=1.5e+02 Score=21.20 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=17.1
Q ss_pred HHhCCCeeeecCCccHHHHHHH
Q 047464 17 LQRRNAAVGCNGNSFIIRYLIN 38 (94)
Q Consensus 17 L~~~~~~VG~~~gSf~~~~L~~ 38 (94)
+.++|..||.-.||++.-|++.
T Consensus 18 ~V~~gmvvGlGTGSTv~~~i~~ 39 (228)
T 4gmk_A 18 WIKDGMIVGLGTGSTVKYMVDA 39 (228)
T ss_dssp GCCTTCEEEECCSHHHHHHHHH
T ss_pred hCCCCCEEEECchHHHHHHHHH
Confidence 4456899999999999866554
No 189
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=21.10 E-value=83 Score=20.04 Aligned_cols=59 Identities=24% Similarity=0.428 Sum_probs=36.0
Q ss_pred ChhHHHhCCCeeeecCCc--------cHHHHHHHhhCCCCCCcccccCCC-------CCCChhhHHHHHhcCCeeEEEEe
Q 047464 13 DIKTLQRRNAAVGCNGNS--------FIIRYLINVLNFKPGSNKKINAKN-------GYNSITSYPMAFESGDIAAAFLV 77 (94)
Q Consensus 13 ~i~dL~~~~~~VG~~~gS--------f~~~~L~~~~~~~~~~i~~~~~~~-------~~~s~~~~~~aL~~g~i~A~v~a 77 (94)
.++.|.++-..|++++.| ....+|.+ .|| ++-..+|+. -|.|+++.. ..+|.++.+
T Consensus 14 ~l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~-~G~---~v~~Vnp~~~~i~G~~~y~sl~~l~-----~~vDlvvi~ 84 (144)
T 2d59_A 14 DIREILTRYKKIALVGASPKPERDANIVMKYLLE-HGY---DVYPVNPKYEEVLGRKCYPSVLDIP-----DKIEVVDLF 84 (144)
T ss_dssp HHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHH-TTC---EEEEECTTCSEETTEECBSSGGGCS-----SCCSEEEEC
T ss_pred HHHHHHcCCCEEEEEccCCCCCchHHHHHHHHHH-CCC---EEEEECCCCCeECCeeccCCHHHcC-----CCCCEEEEE
Confidence 366777545788888764 44567776 777 355555442 234666532 368888885
Q ss_pred ecC
Q 047464 78 FPR 80 (94)
Q Consensus 78 fpk 80 (94)
.|.
T Consensus 85 vp~ 87 (144)
T 2d59_A 85 VKP 87 (144)
T ss_dssp SCH
T ss_pred eCH
Confidence 554
No 190
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=21.09 E-value=48 Score=19.74 Aligned_cols=34 Identities=9% Similarity=-0.111 Sum_probs=26.4
Q ss_pred HHHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 33 IRYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 33 ~~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
..+|.. .|+ .+..+. +.+++.+.+.....|.+|.
T Consensus 25 ~~~L~~-~g~---~v~~~~------~~~~a~~~l~~~~~dlii~ 58 (147)
T 2zay_A 25 ISALSQ-EGF---DIIQCG------NAIEAVPVAVKTHPHLIIT 58 (147)
T ss_dssp HHHHHH-HTE---EEEEES------SHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHH-cCC---eEEEeC------CHHHHHHHHHcCCCCEEEE
Confidence 355655 677 577788 8999998888888888887
No 191
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.08 E-value=1.1e+02 Score=17.78 Aligned_cols=24 Identities=8% Similarity=-0.154 Sum_probs=19.9
Q ss_pred cccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 47 NKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 47 i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
+..+. +.+++.+.+.....|.+|.
T Consensus 37 v~~~~------~~~~a~~~l~~~~~dlii~ 60 (143)
T 3cnb_A 37 IKIAY------NPFDAGDLLHTVKPDVVML 60 (143)
T ss_dssp EEEEC------SHHHHHHHHHHTCCSEEEE
T ss_pred EEEEC------CHHHHHHHHHhcCCCEEEE
Confidence 66777 8888888888888888887
No 192
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=20.81 E-value=71 Score=23.53 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=21.2
Q ss_pred ChhhHHHHHhcCCee-EEEEee-----cCCCCCh
Q 047464 58 SITSYPMAFESGDIA-AAFLVF-----PRGSPLA 85 (94)
Q Consensus 58 s~~~~~~aL~~g~i~-A~v~af-----pkGSpL~ 85 (94)
+.++..+||++|.|. |++++| |.++||.
T Consensus 233 d~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~ 266 (324)
T 3evt_A 233 DTTALMTALDHHQLSMAALDVTEPEPLPTDHPLW 266 (324)
T ss_dssp CHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGG
T ss_pred hHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhh
Confidence 578889999999997 566666 4567764
No 193
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=20.69 E-value=96 Score=17.41 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=22.2
Q ss_pred HHHHHhhCCCCCCcccccCCCCCCChhhHHHHHhcCCeeEEEE
Q 047464 34 RYLINVLNFKPGSNKKINAKNGYNSITSYPMAFESGDIAAAFL 76 (94)
Q Consensus 34 ~~L~~~~~~~~~~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~ 76 (94)
.+|.. .|+ .+.... +.+++.+.+.....|.++.
T Consensus 19 ~~l~~-~~~---~v~~~~------~~~~a~~~~~~~~~dlvl~ 51 (116)
T 3a10_A 19 EELQE-EGY---EIDTAE------NGEEALKKFFSGNYDLVIL 51 (116)
T ss_dssp HHHHH-TTC---EEEEES------SHHHHHHHHHHSCCSEEEE
T ss_pred HHHHH-CCC---EEEEeC------CHHHHHHHHhcCCCCEEEE
Confidence 34444 455 455666 7788887777777787776
No 194
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=20.51 E-value=72 Score=23.59 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=21.2
Q ss_pred ChhhHHHHHhcCCee-EEEEee-----cCCCCCh
Q 047464 58 SITSYPMAFESGDIA-AAFLVF-----PRGSPLA 85 (94)
Q Consensus 58 s~~~~~~aL~~g~i~-A~v~af-----pkGSpL~ 85 (94)
+.++..+||++|.|. |++++| |.++||.
T Consensus 236 de~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~ 269 (324)
T 3hg7_A 236 NEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLW 269 (324)
T ss_dssp CHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTT
T ss_pred CHHHHHHHHHcCCceEEEeccCCCCCCCCCChhh
Confidence 477889999999997 556665 5667764
No 195
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=20.35 E-value=1.1e+02 Score=19.67 Aligned_cols=30 Identities=0% Similarity=-0.156 Sum_probs=22.3
Q ss_pred ChhHHHhCCCeeeecCCccH---HHHHHHhhCCC
Q 047464 13 DIKTLQRRNAAVGCNGNSFI---IRYLINVLNFK 43 (94)
Q Consensus 13 ~i~dL~~~~~~VG~~~gSf~---~~~L~~~~~~~ 43 (94)
-++.|++.|.+++..+++.. ...+.. +|++
T Consensus 100 ~l~~l~~~g~~~~ivS~~~~~~~~~~~~~-~g~~ 132 (232)
T 3fvv_A 100 VVRGHLAAGDLCALVTATNSFVTAPIARA-FGVQ 132 (232)
T ss_dssp HHHHHHHTTCEEEEEESSCHHHHHHHHHH-TTCC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHH-cCCC
Confidence 35677888999999998875 445555 8874
No 196
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=20.27 E-value=64 Score=23.26 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=30.4
Q ss_pred CCeeeecCCccHHHHHHHhhCCCCCCccc-ccCCCCCCChhhHHHHHhc----------CCeeEEEE
Q 047464 21 NAAVGCNGNSFIIRYLINVLNFKPGSNKK-INAKNGYNSITSYPMAFES----------GDIAAAFL 76 (94)
Q Consensus 21 ~~~VG~~~gSf~~~~L~~~~~~~~~~i~~-~~~~~~~~s~~~~~~aL~~----------g~i~A~v~ 76 (94)
|..||.-.||++..+++. ++-...+++. .+ +|......+.+. ..+|.+|+
T Consensus 33 g~vIGLGtGST~~~~i~~-L~~~~~~i~~~V~-----tS~~t~~~~~~~Gi~l~~l~~~~~iD~a~D 93 (239)
T 3uw1_A 33 GAVIGVGTGSTANCFIDA-LAAVKDRYRGAVS-----SSVATTERLKSHGIRVFDLNEIESLQVYVD 93 (239)
T ss_dssp TCEEEECCSHHHHHHHHH-HHTTGGGSCEEEE-----SSHHHHHHHHHTTCCBCCGGGCSCEEEEEE
T ss_pred CCEEEECccHHHHHHHHH-HHhhhccceEEeC-----CcHHHHHHHHHcCCcEEecccccccCEEEE
Confidence 899999999999877766 4332123542 44 133333333332 35888888
No 197
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=20.12 E-value=38 Score=20.15 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=23.5
Q ss_pred CcccccCCCCCCChhhHHHHHhcCCeeEEEE--eecC
Q 047464 46 SNKKINAKNGYNSITSYPMAFESGDIAAAFL--VFPR 80 (94)
Q Consensus 46 ~i~~~~~~~~~~s~~~~~~aL~~g~i~A~v~--afpk 80 (94)
.+..+. +.+++.+.+.....|.+|. .+|.
T Consensus 32 ~v~~~~------~~~~a~~~l~~~~~dlvi~D~~l~~ 62 (136)
T 3kto_A 32 TIQCFA------SAESFMRQQISDDAIGMIIEAHLED 62 (136)
T ss_dssp EEEEES------SHHHHTTSCCCTTEEEEEEETTGGG
T ss_pred EEEEeC------CHHHHHHHHhccCCCEEEEeCcCCC
Confidence 566778 9999999999999999887 4554
Done!