Query 047467
Match_columns 146
No_of_seqs 131 out of 1249
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:19:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.1E-33 2.4E-38 186.3 4.1 73 5-77 1-73 (77)
2 KOG0014 MADS box transcription 100.0 2.3E-32 5E-37 207.0 8.2 76 4-79 1-78 (195)
3 cd00266 MADS_SRF_like SRF-like 100.0 7.7E-31 1.7E-35 175.1 5.3 74 5-78 1-75 (83)
4 smart00432 MADS MADS domain. 100.0 5.3E-30 1.2E-34 160.3 4.4 59 5-63 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3.8E-29 8.3E-34 156.5 3.5 59 5-63 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 9.6E-27 2.1E-31 141.4 -0.2 51 12-62 1-51 (51)
7 KOG0015 Regulator of arginine 99.9 1.2E-22 2.5E-27 160.8 3.2 78 1-78 59-145 (338)
8 COG5068 ARG80 Regulator of arg 99.5 4.9E-15 1.1E-19 122.0 3.2 69 3-71 80-148 (412)
9 PF01486 K-box: K-box region; 95.1 0.039 8.5E-07 37.5 4.1 44 97-146 9-52 (100)
10 PF08432 Vfa1: AAA-ATPase Vps4 82.0 6.8 0.00015 29.5 6.5 23 42-64 11-41 (182)
11 PF09151 DUF1936: Domain of un 74.1 3.4 7.4E-05 22.3 2.0 28 37-64 2-31 (36)
12 PF10584 Proteasome_A_N: Prote 62.5 0.78 1.7E-05 23.1 -1.8 12 47-58 4-15 (23)
13 PF10491 Nrf1_DNA-bind: NLS-bi 61.7 9.2 0.0002 29.7 2.9 40 35-74 45-87 (214)
14 PF04977 DivIC: Septum formati 56.6 42 0.00091 20.9 5.1 33 94-126 18-50 (80)
15 PF09941 DUF2173: Uncharacteri 52.0 20 0.00044 24.9 3.1 25 35-60 3-27 (108)
16 PRK00888 ftsB cell division pr 51.8 53 0.0011 22.5 5.2 32 95-126 29-60 (105)
17 PRK00736 hypothetical protein; 49.7 64 0.0014 20.3 5.6 39 89-127 15-53 (68)
18 TIGR01916 F420_cofE F420-0:gam 49.4 18 0.00038 28.8 2.8 29 36-64 133-161 (243)
19 PRK02119 hypothetical protein; 49.3 68 0.0015 20.5 5.6 40 89-128 19-58 (73)
20 KOG0861 SNARE protein YKT6, sy 46.2 41 0.00088 25.6 4.1 52 63-124 121-172 (198)
21 PRK04325 hypothetical protein; 46.1 78 0.0017 20.2 5.5 39 89-127 19-57 (74)
22 PRK00295 hypothetical protein; 45.9 74 0.0016 20.0 5.5 39 89-127 15-53 (68)
23 PF04102 SlyX: SlyX; InterPro 45.5 69 0.0015 20.0 4.7 38 90-127 15-52 (69)
24 PRK02793 phi X174 lysis protei 42.3 89 0.0019 19.8 5.6 40 89-128 18-57 (72)
25 PF01502 PRA-CH: Phosphoribosy 41.9 8.4 0.00018 25.1 -0.0 33 24-56 22-63 (75)
26 PRK00846 hypothetical protein; 40.1 1E+02 0.0023 20.0 5.4 40 89-128 23-62 (77)
27 COG0139 HisI Phosphoribosyl-AM 39.9 11 0.00024 26.4 0.3 38 20-57 49-96 (111)
28 COG1938 Archaeal enzymes of AT 38.5 1.1E+02 0.0025 24.2 5.8 27 96-122 207-233 (244)
29 cd01365 KISc_KIF1A_KIF1B Kines 38.1 38 0.00082 27.9 3.3 26 39-64 83-111 (356)
30 PF02183 HALZ: Homeobox associ 35.9 90 0.0019 18.0 4.4 30 96-125 8-37 (45)
31 PF08537 NBP1: Fungal Nap bind 35.8 45 0.00098 27.6 3.3 50 93-142 175-224 (323)
32 PLN03230 acetyl-coenzyme A car 35.0 2.8E+02 0.0062 24.0 8.0 26 56-81 38-73 (431)
33 PRK04406 hypothetical protein; 34.8 1.3E+02 0.0027 19.4 6.6 40 89-128 21-60 (75)
34 PF04873 EIN3: Ethylene insens 34.5 13 0.00028 31.1 0.0 42 25-66 50-92 (354)
35 PRK13293 F420-0--gamma-glutamy 33.6 43 0.00094 26.6 2.8 29 36-64 134-162 (245)
36 COG1723 Uncharacterized conser 33.4 1.3E+02 0.0028 25.0 5.5 87 12-114 206-294 (331)
37 PF09403 FadA: Adhesion protei 33.4 1.8E+02 0.0039 20.7 5.7 17 59-75 16-32 (126)
38 PRK10884 SH3 domain-containing 32.9 57 0.0012 25.1 3.3 30 95-124 134-163 (206)
39 PF13540 RCC1_2: Regulator of 32.3 28 0.0006 18.0 1.1 24 39-63 3-26 (30)
40 KOG0184 20S proteasome, regula 31.3 27 0.00058 27.6 1.2 22 39-60 3-24 (254)
41 PF14782 BBS2_C: Ciliary BBSom 30.9 1.6E+02 0.0035 25.4 5.9 27 91-117 59-85 (431)
42 KOG4637 Adaptor for phosphoino 30.6 41 0.00089 28.6 2.3 42 36-77 367-413 (464)
43 PRK09555 feoA ferrous iron tra 29.3 89 0.0019 19.9 3.3 33 29-61 20-52 (74)
44 PLN03229 acetyl-coenzyme A car 29.2 3.4E+02 0.0074 25.2 7.9 36 45-80 49-93 (762)
45 PRK02759 bifunctional phosphor 29.0 30 0.00066 26.7 1.2 36 20-55 47-92 (203)
46 COG1382 GimC Prefoldin, chaper 28.4 1.6E+02 0.0034 20.9 4.6 39 91-129 75-113 (119)
47 COG4831 Roadblock/LC7 domain [ 28.0 66 0.0014 22.0 2.5 30 33-63 3-32 (109)
48 cd01368 KISc_KIF23_like Kinesi 27.9 69 0.0015 26.3 3.2 26 39-64 83-111 (345)
49 PF01996 F420_ligase: F420-0:G 27.9 16 0.00036 28.4 -0.4 29 36-64 141-169 (228)
50 KOG0183 20S proteasome, regula 27.7 37 0.00079 26.7 1.4 17 43-59 3-19 (249)
51 PF14009 DUF4228: Domain of un 27.5 85 0.0018 22.4 3.3 34 42-75 12-46 (181)
52 KOG1690 emp24/gp25L/p24 family 27.0 1.6E+02 0.0035 22.9 4.8 43 92-134 145-187 (215)
53 KOG4252 GTP-binding protein [S 26.9 57 0.0012 25.2 2.3 27 42-74 91-117 (246)
54 PF08172 CASP_C: CASP C termin 26.3 2.6E+02 0.0056 22.2 6.0 34 93-126 100-133 (248)
55 COG5179 TAF1 Transcription ini 26.0 1.1E+02 0.0023 28.1 4.1 45 29-74 446-490 (968)
56 PF07676 PD40: WD40-like Beta 25.9 67 0.0015 17.0 2.0 18 45-62 10-27 (39)
57 PTZ00046 rifin; Provisional 25.7 67 0.0015 27.0 2.7 29 39-76 39-68 (358)
58 cd00187 TOP4c DNA Topoisomeras 25.0 4E+02 0.0086 23.0 7.4 26 47-75 302-327 (445)
59 cd01363 Motor_domain Myosin an 24.5 62 0.0014 23.9 2.2 25 39-63 18-45 (186)
60 cd00106 KISc Kinesin motor dom 24.2 83 0.0018 25.3 3.0 25 40-64 74-101 (328)
61 PF11943 DUF3460: Protein of u 24.0 59 0.0013 20.2 1.6 25 112-138 14-38 (60)
62 PF04678 DUF607: Protein of un 23.9 3.1E+02 0.0067 20.4 6.8 51 60-119 32-83 (180)
63 smart00415 HSF heat shock fact 23.8 89 0.0019 21.0 2.7 37 40-76 12-51 (105)
64 TIGR00634 recN DNA repair prot 23.4 4.8E+02 0.01 22.9 7.8 11 65-75 146-156 (563)
65 TIGR02894 DNA_bind_RsfA transc 23.3 3.2E+02 0.0069 20.4 6.4 21 96-116 114-134 (161)
66 PF05325 DUF730: Protein of un 23.2 2.3E+02 0.005 19.4 4.5 15 39-53 20-34 (122)
67 KOG4445 Uncharacterized conser 23.1 3E+02 0.0066 22.9 5.9 69 31-119 100-177 (368)
68 TIGR02338 gimC_beta prefoldin, 22.7 2.5E+02 0.0055 18.9 5.0 33 93-125 74-106 (110)
69 PF09432 THP2: Tho complex sub 22.7 2.8E+02 0.0062 19.9 5.1 13 64-76 39-51 (132)
70 PF11232 Med25: Mediator compl 22.6 76 0.0016 23.4 2.2 20 40-59 109-128 (152)
71 PF11853 DUF3373: Protein of u 22.5 78 0.0017 27.7 2.6 26 94-119 32-57 (489)
72 PRK02195 V-type ATP synthase s 22.3 2.8E+02 0.0061 21.1 5.4 51 56-119 107-159 (201)
73 TIGR02209 ftsL_broad cell divi 22.3 2.1E+02 0.0046 18.0 5.5 29 96-124 27-55 (85)
74 KOG1123 RNA polymerase II tran 22.2 92 0.002 27.9 3.0 30 47-76 545-588 (776)
75 PF06156 DUF972: Protein of un 22.2 2.7E+02 0.0059 19.1 5.3 32 94-125 23-54 (107)
76 cd03063 TRX_Fd_FDH_beta TRX-li 21.9 1.3E+02 0.0028 20.1 3.1 36 41-76 44-81 (92)
77 cd01370 KISc_KIP3_like Kinesin 21.9 95 0.0021 25.4 2.9 26 39-64 82-110 (338)
78 PRK10803 tol-pal system protei 21.8 1.1E+02 0.0023 24.4 3.1 38 36-74 10-47 (263)
79 PF09638 Ph1570: Ph1570 protei 21.7 89 0.0019 22.6 2.3 27 49-75 125-151 (152)
80 PRK13294 F420-0--gamma-glutamy 21.4 88 0.0019 27.0 2.7 29 36-64 134-162 (448)
81 PF04019 DUF359: Protein of un 21.2 40 0.00086 23.8 0.5 15 50-64 81-95 (121)
82 PF08657 DASH_Spc34: DASH comp 21.1 3.2E+02 0.007 21.8 5.7 43 91-135 178-220 (259)
83 PF00816 Histone_HNS: H-NS his 21.1 2.5E+02 0.0054 18.2 4.6 17 97-113 2-18 (93)
84 COG3411 Ferredoxin [Energy pro 21.0 97 0.0021 19.5 2.2 30 47-76 18-48 (64)
85 cd01371 KISc_KIF3 Kinesin moto 21.0 1.2E+02 0.0025 24.7 3.3 25 39-63 76-103 (333)
86 KOG3718 Carnitine O-acyltransf 20.6 2.9E+02 0.0063 24.5 5.6 25 52-76 15-39 (609)
87 PF11172 DUF2959: Protein of u 20.6 1E+02 0.0022 23.8 2.6 13 65-77 44-56 (201)
88 PF01166 TSC22: TSC-22/dip/bun 20.2 2.3E+02 0.005 17.5 4.7 30 93-122 14-43 (59)
89 PF13188 PAS_8: PAS domain; PD 20.2 1E+02 0.0022 17.9 2.2 29 40-70 6-34 (64)
90 cd01366 KISc_C_terminal Kinesi 20.1 1.1E+02 0.0023 24.8 2.9 24 39-62 72-98 (329)
91 PF05873 Mt_ATP-synt_D: ATP sy 20.1 3.2E+02 0.0069 20.1 5.2 34 107-145 103-136 (161)
92 PF04568 IATP: Mitochondrial A 20.0 2.8E+02 0.006 18.9 4.5 11 101-111 73-83 (100)
No 1
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=1.1e-33 Score=186.33 Aligned_cols=73 Identities=45% Similarity=0.698 Sum_probs=71.1
Q ss_pred ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCCCC
Q 047467 5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNH 77 (146)
Q Consensus 5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~~~ 77 (146)
||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++|.|++|++++||+||+..+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998753
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.97 E-value=2.3e-32 Score=206.96 Aligned_cols=76 Identities=53% Similarity=0.785 Sum_probs=72.8
Q ss_pred cccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCc--hHHHHHHhhCCCCCC
Q 047467 4 KWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPS--VEAVANRFLGMNHLP 79 (146)
Q Consensus 4 ~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~--~~~vl~ry~~~~~~~ 79 (146)
|||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|.|++|+ |+.|+++|.......
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 78 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS 78 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999988 999999999876543
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=7.7e-31 Score=175.08 Aligned_cols=74 Identities=53% Similarity=0.759 Sum_probs=70.9
Q ss_pred ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCc-hHHHHHHhhCCCCC
Q 047467 5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPS-VEAVANRFLGMNHL 78 (146)
Q Consensus 5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~-~~~vl~ry~~~~~~ 78 (146)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ +.++|++|...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~ 75 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL 75 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence 799999999999999999999999999999999999999999999999999999998877 99999999998754
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=5.3e-30 Score=160.35 Aligned_cols=59 Identities=51% Similarity=0.824 Sum_probs=58.1
Q ss_pred ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCC
Q 047467 5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHP 63 (146)
Q Consensus 5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p 63 (146)
||+||+|++|+|++.|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=3.8e-29 Score=156.54 Aligned_cols=59 Identities=53% Similarity=0.754 Sum_probs=57.7
Q ss_pred ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCC
Q 047467 5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHP 63 (146)
Q Consensus 5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p 63 (146)
||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999876
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.92 E-value=9.6e-27 Score=141.38 Aligned_cols=51 Identities=51% Similarity=0.838 Sum_probs=46.7
Q ss_pred EEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecC
Q 047467 12 KKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGH 62 (146)
Q Consensus 12 ~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~ 62 (146)
++|+|+..|++||+||+.||||||+|||+||||+||||||||+|++|.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 579999999999999999999999999999999999999999999999986
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.86 E-value=1.2e-22 Score=160.79 Aligned_cols=78 Identities=42% Similarity=0.599 Sum_probs=70.8
Q ss_pred CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCch---------HHHHHH
Q 047467 1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV---------EAVANR 71 (146)
Q Consensus 1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~---------~~vl~r 71 (146)
|++.||+||+|+||+|+..|.+||+|||.||||||+||++|+|.+|-|+|.|.+|.+|.|++|.+ +++|..
T Consensus 59 k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~ 138 (338)
T KOG0015|consen 59 KKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQA 138 (338)
T ss_pred ccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999974 456666
Q ss_pred hhCCCCC
Q 047467 72 FLGMNHL 78 (146)
Q Consensus 72 y~~~~~~ 78 (146)
.++.+..
T Consensus 139 cLn~pd~ 145 (338)
T KOG0015|consen 139 CLNAPDT 145 (338)
T ss_pred HhcCCCC
Confidence 6766543
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.52 E-value=4.9e-15 Score=122.01 Aligned_cols=69 Identities=39% Similarity=0.549 Sum_probs=64.7
Q ss_pred CcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHH
Q 047467 3 TKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANR 71 (146)
Q Consensus 3 ~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~r 71 (146)
+|||+||.|.+|+|+.+|.|||+||+.||+|||.||++|+|++|.++|.|.+|..+.|+.|....|+.-
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 689999999999999999999999999999999999999999999999999999999999986655543
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.09 E-value=0.039 Score=37.50 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCChhhcC
Q 047467 97 ELNQQHNELRRQLEEEKEQEKILTQMRRGKETQPRWWETPVDEHNLQELL 146 (146)
Q Consensus 97 ~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~~~~~w~~~l~~L~~eELe 146 (146)
.+...++.+..++...+.+++.|+...+...|+ +|++|+++||+
T Consensus 9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ge------dL~~Ls~~eL~ 52 (100)
T PF01486_consen 9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGE------DLESLSLKELQ 52 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccchHHHH
Confidence 456677778888888899999999999999997 99999999984
No 10
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=82.02 E-value=6.8 Score=29.49 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=16.3
Q ss_pred cCCceEEEEecCC--------CCCeeecCCc
Q 047467 42 TGSEIAVVVFSQS--------GKPYTFGHPS 64 (146)
Q Consensus 42 c~~~v~~ii~s~~--------g~~~~~~~p~ 64 (146)
.++..|.|||-|+ +.-|.|..|+
T Consensus 11 ~~~k~C~IC~KpsttVL~t~~~~DfFY~C~~ 41 (182)
T PF08432_consen 11 TDAKACFICYKPSTTVLITPDNKDFFYVCPS 41 (182)
T ss_pred CCCCceeEecCCCceEEecCCCCCeEEeCcc
Confidence 5677777777654 6777777776
No 11
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=74.07 E-value=3.4 Score=22.35 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=18.6
Q ss_pred hhhhhcCCceEEEEecCCCCCeee--cCCc
Q 047467 37 ELVTLTGSEIAVVVFSQSGKPYTF--GHPS 64 (146)
Q Consensus 37 ELs~Lc~~~v~~ii~s~~g~~~~~--~~p~ 64 (146)
.|+--||+-|.+.||...|..-.| ++|.
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 467789999999999999955444 6664
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=62.54 E-value=0.78 Score=23.11 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=9.0
Q ss_pred EEEEecCCCCCe
Q 047467 47 AVVVFSQSGKPY 58 (146)
Q Consensus 47 ~~ii~s~~g~~~ 58 (146)
.+.+|||+|+.+
T Consensus 4 ~~t~FSp~Grl~ 15 (23)
T PF10584_consen 4 SITTFSPDGRLF 15 (23)
T ss_dssp STTSBBTTSSBH
T ss_pred CceeECCCCeEE
Confidence 345799999875
No 13
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=61.65 E-value=9.2 Score=29.65 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=31.4
Q ss_pred hHhhhhhcCCceEEEEecCCC---CCeeecCCchHHHHHHhhC
Q 047467 35 ACELVTLTGSEIAVVVFSQSG---KPYTFGHPSVEAVANRFLG 74 (146)
Q Consensus 35 a~ELs~Lc~~~v~~ii~s~~g---~~~~~~~p~~~~vl~ry~~ 74 (146)
..|++|-+|-++.|++++|+- ..-.||..-...|+..|.+
T Consensus 45 ~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 45 IDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 489999999999999999853 3446788777777777654
No 14
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.58 E-value=42 Score=20.85 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047467 94 RINELNQQHNELRRQLEEEKEQEKILTQMRRGK 126 (146)
Q Consensus 94 ~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~ 126 (146)
....++.++..++.+++..+.++..|+..+...
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666555544
No 15
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=51.99 E-value=20 Score=24.92 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=20.5
Q ss_pred hHhhhhhcCCceEEEEecCCCCCeee
Q 047467 35 ACELVTLTGSEIAVVVFSQSGKPYTF 60 (146)
Q Consensus 35 a~ELs~Lc~~~v~~ii~s~~g~~~~~ 60 (146)
-.+|..|-|| +|+..||++|++.+|
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~ 27 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEY 27 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEee
Confidence 4678888888 556789999999887
No 16
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=51.83 E-value=53 Score=22.45 Aligned_cols=32 Identities=13% Similarity=-0.009 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047467 95 INELNQQHNELRRQLEEEKEQEKILTQMRRGK 126 (146)
Q Consensus 95 ~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~ 126 (146)
...+++++..++.+++..+.++..|+..+...
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555554433
No 17
>PRK00736 hypothetical protein; Provisional
Probab=49.70 E-value=64 Score=20.28 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=30.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047467 89 GHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKE 127 (146)
Q Consensus 89 ~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~ 127 (146)
++....+..||..+.+.+.+++.+..+...|.+.++...
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678889999999998889888888888877666544
No 18
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=49.37 E-value=18 Score=28.76 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=25.1
Q ss_pred HhhhhhcCCceEEEEecCCCCCeeecCCc
Q 047467 36 CELVTLTGSEIAVVVFSQSGKPYTFGHPS 64 (146)
Q Consensus 36 ~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~ 64 (146)
.+|.-.+|++|+|||+.+.|.++--+.+.
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~g 161 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQVG 161 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCCC
Confidence 45777899999999999999998888775
No 19
>PRK02119 hypothetical protein; Provisional
Probab=49.33 E-value=68 Score=20.48 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047467 89 GHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKET 128 (146)
Q Consensus 89 ~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~ 128 (146)
++....+..||..+.+.+.+++.+..+...|...++...+
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~ 58 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQP 58 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556788899999999999999988888888777776543
No 20
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.25 E-value=41 Score=25.63 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=24.6
Q ss_pred CchHHHHHHhhCCCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 63 PSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 63 p~~~~vl~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
|..+..|++|+++.++.+- .....+|...-.-|.+-++..-+++++|.....
T Consensus 121 ~~L~~~l~kyqdP~ead~l----------~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~ 172 (198)
T KOG0861|consen 121 PYLDTLLSKYQDPAEADPL----------LKVQNELDETKIILHKTIESVLERGEKLDDLVS 172 (198)
T ss_pred hhHHHHHHHhcChhhhChH----------HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4566777777665433111 111123333333344445555556666655443
No 21
>PRK04325 hypothetical protein; Provisional
Probab=46.06 E-value=78 Score=20.23 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047467 89 GHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKE 127 (146)
Q Consensus 89 ~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~ 127 (146)
++....+..|+..+...+.++..+..+...|...++...
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678888999988888888888888888876666654
No 22
>PRK00295 hypothetical protein; Provisional
Probab=45.90 E-value=74 Score=19.97 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=30.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047467 89 GHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKE 127 (146)
Q Consensus 89 ~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~ 127 (146)
++..+.+..||..+.+.+.+++.+..+...|...++...
T Consensus 15 a~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 15 AFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888999998888888888888888877666554
No 23
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.52 E-value=69 Score=20.04 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=25.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047467 90 HRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKE 127 (146)
Q Consensus 90 ~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~ 127 (146)
+....+..|+..+...+.+++.++.....|...++...
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567788888888888888888888877777666554
No 24
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.33 E-value=89 Score=19.84 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=31.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047467 89 GHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKET 128 (146)
Q Consensus 89 ~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~ 128 (146)
++....+..||..+...+.+++.+..+...|...++....
T Consensus 18 afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 18 AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556788889999988888888888888888777766544
No 25
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=41.94 E-value=8.4 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=25.4
Q ss_pred ccccccchhhh---------hHhhhhhcCCceEEEEecCCCC
Q 047467 24 FSKRRSGIYKK---------ACELVTLTGSEIAVVVFSQSGK 56 (146)
Q Consensus 24 f~kR~~gl~kK---------a~ELs~Lc~~~v~~ii~s~~g~ 56 (146)
||+-|++|..| +.|+.+-||.|.-++..-|.|.
T Consensus 22 ~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 22 YSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp EETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred EEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 47777777555 5789999999999999998886
No 26
>PRK00846 hypothetical protein; Provisional
Probab=40.07 E-value=1e+02 Score=20.01 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=31.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047467 89 GHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKET 128 (146)
Q Consensus 89 ~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~ 128 (146)
++....+..||..+...+.+++.+..+...+...++....
T Consensus 23 AfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 23 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456778888888888888888888888888777776543
No 27
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=39.90 E-value=11 Score=26.35 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=27.6
Q ss_pred ccccc-cccccchh---------hhhHhhhhhcCCceEEEEecCCCCC
Q 047467 20 RLITF-SKRRSGIY---------KKACELVTLTGSEIAVVVFSQSGKP 57 (146)
Q Consensus 20 r~~tf-~kR~~gl~---------kKa~ELs~Lc~~~v~~ii~s~~g~~ 57 (146)
+.++| |+=|+-|. .|+.|+.+-||.|+-+++..|.|.+
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~ 96 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGP 96 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 34444 65555454 4568999999999999999996644
No 28
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=38.54 E-value=1.1e+02 Score=24.25 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILTQM 122 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~~~ 122 (146)
..|.++.+.+..++++..++.+..++.
T Consensus 207 d~L~keAe~i~~~lekl~eq~~~~~~~ 233 (244)
T COG1938 207 DKLEKEAEEIEEQLEKLAEQLEKEEER 233 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777776666655543
No 29
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=38.14 E-value=38 Score=27.89 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=20.5
Q ss_pred hhhcCCceEEEEecCCC--CCee-ecCCc
Q 047467 39 VTLTGSEIAVVVFSQSG--KPYT-FGHPS 64 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g--~~~~-~~~p~ 64 (146)
+++.|..++|++|+++| |.|. ||.+.
T Consensus 83 ~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~ 111 (356)
T cd01365 83 HAFEGYNVCLFAYGQTGSGKSYTMMGYKE 111 (356)
T ss_pred HHhCCCceEEEEecCCCCCCeEEecCCCC
Confidence 36889999999999875 7775 46654
No 30
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.94 E-value=90 Score=18.04 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILTQMRRG 125 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~~~~~~ 125 (146)
..|...|+.|..+.+.+..++..|+..+..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777776666666666655543
No 31
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=35.81 E-value=45 Score=27.57 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCh
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQMRRGKETQPRWWETPVDEHNL 142 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~~~~~w~~~l~~L~~ 142 (146)
+.+..|+.++.+|..+|...+.+++.+++.++-......|+..-|++.++
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddani 224 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANI 224 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55555555555555555555555555544443222211344444444443
No 32
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=34.97 E-value=2.8e+02 Score=23.95 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=16.3
Q ss_pred CCeeecCCc------h----HHHHHHhhCCCCCCCC
Q 047467 56 KPYTFGHPS------V----EAVANRFLGMNHLPND 81 (146)
Q Consensus 56 ~~~~~~~p~------~----~~vl~ry~~~~~~~~~ 81 (146)
..++|++|. + -..|.+|..+...+.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (431)
T PLN03230 38 LEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPKP 73 (431)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCCC
Confidence 347776654 3 3588888887654443
No 33
>PRK04406 hypothetical protein; Provisional
Probab=34.77 E-value=1.3e+02 Score=19.37 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=31.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047467 89 GHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKET 128 (146)
Q Consensus 89 ~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~ 128 (146)
++....+..||..+...+.+++.+..+...|.+.++...+
T Consensus 21 AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 21 AFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556788899999999888888888888888777766543
No 34
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=34.51 E-value=13 Score=31.09 Aligned_cols=42 Identities=31% Similarity=0.351 Sum_probs=0.0
Q ss_pred cccccchhhhhHhhhhhcCCceEE-EEecCCCCCeeecCCchH
Q 047467 25 SKRRSGIYKKACELVTLTGSEIAV-VVFSQSGKPYTFGHPSVE 66 (146)
Q Consensus 25 ~kR~~gl~kKa~ELs~Lc~~~v~~-ii~s~~g~~~~~~~p~~~ 66 (146)
+.=..||+|=.--..-+|+|.-+| -+++..|++.+|++|+.+
T Consensus 50 s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 50 SRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp -------------------------------------------
T ss_pred hhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 333456666667778899999999 788888999999999976
No 35
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=33.61 E-value=43 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=24.1
Q ss_pred HhhhhhcCCceEEEEecCCCCCeeecCCc
Q 047467 36 CELVTLTGSEIAVVVFSQSGKPYTFGHPS 64 (146)
Q Consensus 36 ~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~ 64 (146)
.+|.-.+|++|+|||....|.++-.+...
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t~ 162 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQRG 162 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCcc
Confidence 45677899999999999999888777654
No 36
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=33.40 E-value=1.3e+02 Score=25.01 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=56.3
Q ss_pred EEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecC--CCCCeeecCCchHHHHHHhhCCCCCCCCCCcchhhh
Q 047467 12 KKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQ--SGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVG 89 (146)
Q Consensus 12 ~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~--~g~~~~~~~p~~~~vl~ry~~~~~~~~~~~~~~~~~ 89 (146)
+.|..+-++.-.-+.+|.-|+|+..+|-.+ .+-|-..|. +...|.|..|...++-......-+-
T Consensus 206 ~~~pq~la~~gkvslsr~eilk~iG~LFll---R~~iNL~s~IlDtPef~W~ePqleplY~~~~~yLdI----------- 271 (331)
T COG1723 206 KPIPQELARTGKVSLSRKEILKQIGKLFLL---RVSINLHSDILDTPEFFWSEPQLEPLYLAVREYLDI----------- 271 (331)
T ss_pred chhHHHHhhcCCccccHHHHHHHHhHHhhe---eeeeeeeeccccCchhcccCcchhHHHHHHHHHhch-----------
Confidence 444455556666788999999999999876 444444443 3456778899988776555444221
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 047467 90 HRQVRINELNQQHNELRRQLEEEKE 114 (146)
Q Consensus 90 ~~~~~~~~l~~~~~~l~~el~~ek~ 114 (146)
..++..|+.+++-+.+.++...+
T Consensus 272 --~~RvnvLN~Rl~vi~d~l~il~e 294 (331)
T COG1723 272 --NPRVNVLNRRLEVISDLLDILNE 294 (331)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHH
Confidence 13566777777776666655543
No 37
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=33.39 E-value=1.8e+02 Score=20.71 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=6.3
Q ss_pred eecCCchHHHHHHhhCC
Q 047467 59 TFGHPSVEAVANRFLGM 75 (146)
Q Consensus 59 ~~~~p~~~~vl~ry~~~ 75 (146)
+|+.|...+|..++.+.
T Consensus 16 sfaA~~~~~v~~~l~~L 32 (126)
T PF09403_consen 16 SFAATATASVESELNQL 32 (126)
T ss_dssp -------HHHHHHHHHH
T ss_pred HHHcccchHHHHHHHHH
Confidence 45555566677666554
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.86 E-value=57 Score=25.14 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 95 INELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 95 ~~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
+..|..+..+|.+++...+.+++.++..+.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666555544433
No 39
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=32.26 E-value=28 Score=18.01 Aligned_cols=24 Identities=21% Similarity=0.345 Sum_probs=16.6
Q ss_pred hhhcCCceEEEEecCCCCCeeecCC
Q 047467 39 VTLTGSEIAVVVFSQSGKPYTFGHP 63 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g~~~~~~~p 63 (146)
+|-||....+++.++ |..|.|+..
T Consensus 3 ~ia~G~~ht~al~~~-g~v~~wG~n 26 (30)
T PF13540_consen 3 QIACGGYHTCALTSD-GEVYCWGDN 26 (30)
T ss_dssp EEEEESSEEEEEE-T-TEEEEEE--
T ss_pred EEEecCCEEEEEEcC-CCEEEEcCC
Confidence 356888888777765 999999864
No 40
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=31.29 E-value=27 Score=27.55 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.0
Q ss_pred hhhcCCceEEEEecCCCCCeee
Q 047467 39 VTLTGSEIAVVVFSQSGKPYTF 60 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g~~~~~ 60 (146)
||=+|-|.|.-+|||+|..|..
T Consensus 3 sIGtGyDls~s~fSpdGrvfQv 24 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQV 24 (254)
T ss_pred cccccccccceeeCCCCceehH
Confidence 4557889999999999988753
No 41
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=30.86 E-value=1.6e+02 Score=25.37 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047467 91 RQVRINELNQQHNELRRQLEEEKEQEK 117 (146)
Q Consensus 91 ~~~~~~~l~~~~~~l~~el~~ek~~~~ 117 (146)
....+++|.++-..|..||...++...
T Consensus 59 ~~~~lreL~qkKQ~Ll~EL~nyEe~~~ 85 (431)
T PF14782_consen 59 EQEALRELSQKKQNLLLELRNYEENAK 85 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888888888877776665543
No 42
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=30.58 E-value=41 Score=28.61 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=29.2
Q ss_pred HhhhhhcCCceEEEEecCCCCCeeecCCc-----hHHHHHHhhCCCC
Q 047467 36 CELVTLTGSEIAVVVFSQSGKPYTFGHPS-----VEAVANRFLGMNH 77 (146)
Q Consensus 36 ~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~-----~~~vl~ry~~~~~ 77 (146)
+-|||+||-+|--.+.-.+...|-|..|. ..+++..|...+-
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSL 413 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhH
Confidence 46899998766554434445667777775 5788889987653
No 43
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=29.27 E-value=89 Score=19.87 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=29.2
Q ss_pred cchhhhhHhhhhhcCCceEEEEecCCCCCeeec
Q 047467 29 SGIYKKACELVTLTGSEIAVVVFSQSGKPYTFG 61 (146)
Q Consensus 29 ~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~ 61 (146)
..+..+-.++-++.|++|-++-.+|.|.|..+.
T Consensus 20 ~~~~~rL~~mGl~pG~~V~v~~~aP~gdPi~i~ 52 (74)
T PRK09555 20 PAYRQKLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (74)
T ss_pred hHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEE
Confidence 457888999999999999999999999888774
No 44
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=29.23 E-value=3.4e+02 Score=25.24 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCCeeecCCc---------hHHHHHHhhCCCCCCC
Q 047467 45 EIAVVVFSQSGKPYTFGHPS---------VEAVANRFLGMNHLPN 80 (146)
Q Consensus 45 ~v~~ii~s~~g~~~~~~~p~---------~~~vl~ry~~~~~~~~ 80 (146)
++.|+.--..|+-+.|+||. +-..|.+|..+...+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (762)
T PLN03229 49 DLAVVAKIRKGKKHEYPWPADPDPNVKGGVLSYLSHFKPLKEKPK 93 (762)
T ss_pred ceEEEeeeccccccCCCCCCCCCCCcccchhhHhhccCCCCCCCC
Confidence 45666655668778887764 3456677766654433
No 45
>PRK02759 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed
Probab=28.95 E-value=30 Score=26.70 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.1
Q ss_pred ccccc-cccccchhhhh---------HhhhhhcCCceEEEEecCCC
Q 047467 20 RLITF-SKRRSGIYKKA---------CELVTLTGSEIAVVVFSQSG 55 (146)
Q Consensus 20 r~~tf-~kR~~gl~kKa---------~ELs~Lc~~~v~~ii~s~~g 55 (146)
..++| |+-|+.|..|- .++.+-||.|.-++..-|.|
T Consensus 47 g~~~~~SRSr~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G 92 (203)
T PRK02759 47 GEVTFFSRSKQRLWTKGETSGNTQKVVSIRLDCDNDTLLVLVEPIG 92 (203)
T ss_pred CcEEEEeCCCCcccCCCCCCCCeEEEEEEEecCCCCeEEEEEEecC
Confidence 44555 77778887665 58999999999999988865
No 46
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.40 E-value=1.6e+02 Score=20.87 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 047467 91 RQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKETQ 129 (146)
Q Consensus 91 ~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~~ 129 (146)
...+...|..++.-|..+.+...++.++|+..+..+.++
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445667777888888888888888888888887766553
No 47
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=27.97 E-value=66 Score=22.04 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=22.3
Q ss_pred hhhHhhhhhcCCceEEEEecCCCCCeeecCC
Q 047467 33 KKACELVTLTGSEIAVVVFSQSGKPYTFGHP 63 (146)
Q Consensus 33 kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p 63 (146)
-|-.||--+-||- |.=.|||+|+..+|-.|
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeCC
Confidence 3567777777774 44579999999999553
No 48
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=27.92 E-value=69 Score=26.29 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=20.5
Q ss_pred hhhcCCceEEEEecCCC--CCee-ecCCc
Q 047467 39 VTLTGSEIAVVVFSQSG--KPYT-FGHPS 64 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g--~~~~-~~~p~ 64 (146)
.++-|..+++++|+++| |.|. ||++.
T Consensus 83 ~~l~G~n~ti~aYGqtGSGKTyTm~G~~~ 111 (345)
T cd01368 83 DLLKGKNSLLFTYGVTNSGKTYTMQGSPG 111 (345)
T ss_pred HHhCCCceEEEEeCCCCCCCeEEecCCCC
Confidence 46789999999999886 7776 46654
No 49
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=27.91 E-value=16 Score=28.44 Aligned_cols=29 Identities=28% Similarity=0.644 Sum_probs=22.0
Q ss_pred HhhhhhcCCceEEEEecCCCCCeeecCCc
Q 047467 36 CELVTLTGSEIAVVVFSQSGKPYTFGHPS 64 (146)
Q Consensus 36 ~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~ 64 (146)
.+|.-.||++|+|||..++|.++..+++.
T Consensus 141 ~~l~~~~g~~v~ViI~Dt~gr~~r~G~~~ 169 (228)
T PF01996_consen 141 EELKERTGKDVGVIITDTNGRPWRLGQTG 169 (228)
T ss_dssp HHHHHHHS---EEEEEEEEEETTEECEEE
T ss_pred HHHHHHHCCceEEEEECCCCcEEecCCcc
Confidence 56777899999999999999888888765
No 50
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.67 E-value=37 Score=26.70 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.6
Q ss_pred CCceEEEEecCCCCCee
Q 047467 43 GSEIAVVVFSQSGKPYT 59 (146)
Q Consensus 43 ~~~v~~ii~s~~g~~~~ 59 (146)
+-|-|+-||||+|..+.
T Consensus 3 rydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 3 RYDRALTVFSPDGHLFQ 19 (249)
T ss_pred ccccceEEECCCCCEEe
Confidence 35778999999998764
No 51
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=27.47 E-value=85 Score=22.37 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=23.5
Q ss_pred cCCceEEEEecCCCCCeeecCCc-hHHHHHHhhCC
Q 047467 42 TGSEIAVVVFSQSGKPYTFGHPS-VEAVANRFLGM 75 (146)
Q Consensus 42 c~~~v~~ii~s~~g~~~~~~~p~-~~~vl~ry~~~ 75 (146)
|+...++-|..++|....|..|- +..|+..|=++
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 33444444444789999998875 78888887554
No 52
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.97 E-value=1.6e+02 Score=22.86 Aligned_cols=43 Identities=19% Similarity=0.546 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 047467 92 QVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKETQPRWWE 134 (146)
Q Consensus 92 ~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~~~~~w~ 134 (146)
..++..|+++++.++.+-.....+.+..+..-........||-
T Consensus 145 ~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Ws 187 (215)
T KOG1690|consen 145 EGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWS 187 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehh
Confidence 4577788888888777766666666666655554444456884
No 53
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=26.87 E-value=57 Score=25.23 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=18.7
Q ss_pred cCCceEEEEecCCCCCeeecCCchHHHHHHhhC
Q 047467 42 TGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLG 74 (146)
Q Consensus 42 c~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~ 74 (146)
-||++||+|||.++.. |++.+++=|..
T Consensus 91 rgaqa~vLVFSTTDr~------SFea~~~w~~k 117 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY------SFEATLEWYNK 117 (246)
T ss_pred ccccceEEEEecccHH------HHHHHHHHHHH
Confidence 5899999999987643 34555555543
No 54
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.26 E-value=2.6e+02 Score=22.17 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQMRRGK 126 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~ 126 (146)
..+..+.+++..|+.+++.++.-+-+|=+.++..
T Consensus 100 ~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 100 EELRKQQQTISSLRREVESLRADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777776666654
No 55
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=25.99 E-value=1.1e+02 Score=28.15 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=39.4
Q ss_pred cchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhC
Q 047467 29 SGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLG 74 (146)
Q Consensus 29 ~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~ 74 (146)
.+||++|.||.+=--+.+.++=||. ..|+..+.|.|-+.|..|-.
T Consensus 446 ~e~i~t~~elTvgDtsp~~L~EySE-e~P~~Lsn~GMas~l~nYYR 490 (968)
T COG5179 446 QEIIKTAGELTVGDTSPFSLFEYSE-EEPFFLSNPGMASLLNNYYR 490 (968)
T ss_pred hhhhccccceeccCCCceeeeeecc-cCceeecCchHHHHHHHHHH
Confidence 6899999999999999999999998 77888899999877777754
No 56
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=25.90 E-value=67 Score=16.98 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=13.2
Q ss_pred ceEEEEecCCCCCeeecC
Q 047467 45 EIAVVVFSQSGKPYTFGH 62 (146)
Q Consensus 45 ~v~~ii~s~~g~~~~~~~ 62 (146)
.-.-..+||+|+-..|++
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 455678999999888865
No 57
>PTZ00046 rifin; Provisional
Probab=25.71 E-value=67 Score=27.00 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.1
Q ss_pred hhhcCCceEEEEecCCCCCeeec-CCchHHHHHHhhCCC
Q 047467 39 VTLTGSEIAVVVFSQSGKPYTFG-HPSVEAVANRFLGMN 76 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g~~~~~~-~p~~~~vl~ry~~~~ 76 (146)
-+||-+|. |+| -|. .|.|.+|.+.|....
T Consensus 39 R~LcECeL----Y~p-----nYDNDPeMK~Vme~F~rqT 68 (358)
T PTZ00046 39 RLLCECEL----YSS-----NYDNDPEMKSVMENFDRQT 68 (358)
T ss_pred hhhhhhhc----CCC-----CCCCcHHHHHHHHHHhHHH
Confidence 46888887 454 243 499999999997764
No 58
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=25.05 E-value=4e+02 Score=23.04 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=21.9
Q ss_pred EEEEecCCCCCeeecCCchHHHHHHhhCC
Q 047467 47 AVVVFSQSGKPYTFGHPSVEAVANRFLGM 75 (146)
Q Consensus 47 ~~ii~s~~g~~~~~~~p~~~~vl~ry~~~ 75 (146)
-++++.++|++..| ++.++|+.|...
T Consensus 302 Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 302 NMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred eEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 67888889999888 788899988775
No 59
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=24.54 E-value=62 Score=23.88 Aligned_cols=25 Identities=32% Similarity=0.719 Sum_probs=18.5
Q ss_pred hhhcCCceEEEEecCCC--CCeee-cCC
Q 047467 39 VTLTGSEIAVVVFSQSG--KPYTF-GHP 63 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g--~~~~~-~~p 63 (146)
.++.|.++|+++|+++| |.|.- +.+
T Consensus 18 ~~~~G~n~~i~~yG~tGsGKT~Tm~G~~ 45 (186)
T cd01363 18 SALDGYNVCIFAYGQTGSGKTYTMEGKR 45 (186)
T ss_pred HHhCCcceeEEEECCCCCcceEecCCCC
Confidence 34679999999999985 76653 443
No 60
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=24.20 E-value=83 Score=25.27 Aligned_cols=25 Identities=40% Similarity=0.798 Sum_probs=19.2
Q ss_pred hhcCCceEEEEecCCC--CCee-ecCCc
Q 047467 40 TLTGSEIAVVVFSQSG--KPYT-FGHPS 64 (146)
Q Consensus 40 ~Lc~~~v~~ii~s~~g--~~~~-~~~p~ 64 (146)
++.|..+|+++|+++| |.|. ||++.
T Consensus 74 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~ 101 (328)
T cd00106 74 VLEGYNGTIFAYGQTGSGKTYTMFGSPK 101 (328)
T ss_pred HhCCCceeEEEecCCCCCCeEEecCCCC
Confidence 4679999999999875 7775 46543
No 61
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=23.98 E-value=59 Score=20.21 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCC
Q 047467 112 EKEQEKILTQMRRGKETQPRWWETPVD 138 (146)
Q Consensus 112 ek~~~~~l~~~~~~~~~~~~~w~~~l~ 138 (146)
.+++.-.+.+..+. |..-|||.+++
T Consensus 14 lk~~~Pele~~Q~~--GRallWDk~~d 38 (60)
T PF11943_consen 14 LKAKHPELEEEQRA--GRALLWDKPQD 38 (60)
T ss_pred HHHhCCchHHHHHH--hhHHhcCCCCC
Confidence 34444444433333 22269998654
No 62
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=23.87 E-value=3.1e+02 Score=20.35 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=29.0
Q ss_pred ecCCc-hHHHHHHhhCCCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 60 FGHPS-VEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKIL 119 (146)
Q Consensus 60 ~~~p~-~~~vl~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l 119 (146)
+-.|. +...+.+-.+.... +.+...+...+..++..++.+++...+....+
T Consensus 32 ~L~P~~v~~~v~~~~~~~~~---------~~~~~~~~~~l~~~l~~~~~el~~le~~k~~i 83 (180)
T PF04678_consen 32 YLRPKQVKEAVHRLLPLLNV---------EEYQNSRERQLRKRLEELRQELAPLEKIKQEI 83 (180)
T ss_pred eECHHHHHHHHHHHhccccc---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55575 66677666665422 12223455666667777777776666554444
No 63
>smart00415 HSF heat shock factor.
Probab=23.85 E-value=89 Score=21.05 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=26.9
Q ss_pred hhcCCceE-EEEecCCCCCeeecCCc--hHHHHHHhhCCC
Q 047467 40 TLTGSEIA-VVVFSQSGKPYTFGHPS--VEAVANRFLGMN 76 (146)
Q Consensus 40 ~Lc~~~v~-~ii~s~~g~~~~~~~p~--~~~vl~ry~~~~ 76 (146)
+|.+.+.. +|-.+|+|..+....|. ...||-+|-..+
T Consensus 12 ~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~ 51 (105)
T smart00415 12 LVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHN 51 (105)
T ss_pred HHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCC
Confidence 34555554 88899999988887766 467888886653
No 64
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.38 E-value=4.8e+02 Score=22.94 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=7.5
Q ss_pred hHHHHHHhhCC
Q 047467 65 VEAVANRFLGM 75 (146)
Q Consensus 65 ~~~vl~ry~~~ 75 (146)
-..+||+|.+.
T Consensus 146 ~~~lLD~~~~~ 156 (563)
T TIGR00634 146 QRQLLDTFAGA 156 (563)
T ss_pred HHHHHHHhcCc
Confidence 45777777763
No 65
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.30 E-value=3.2e+02 Score=20.36 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQLEEEKEQE 116 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~ 116 (146)
..|..+++.|..+++.+.++.
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 66
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=23.22 E-value=2.3e+02 Score=19.40 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=12.1
Q ss_pred hhhcCCceEEEEecC
Q 047467 39 VTLTGSEIAVVVFSQ 53 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~ 53 (146)
.|.||+.+.|+|..+
T Consensus 20 ~ie~dcnakvvvats 34 (122)
T PF05325_consen 20 PIECDCNAKVVVATS 34 (122)
T ss_pred ceeccCCceEEEEec
Confidence 688999999988654
No 67
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.10 E-value=3e+02 Score=22.87 Aligned_cols=69 Identities=19% Similarity=0.288 Sum_probs=41.6
Q ss_pred hhhhhHhhhhhc-----CCceEEEEecCCCCCeeecCCc---h-HHHHHHhhCCCCCCCCCCcchhhhhhhhhhHHHHHH
Q 047467 31 IYKKACELVTLT-----GSEIAVVVFSQSGKPYTFGHPS---V-EAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQ 101 (146)
Q Consensus 31 l~kKa~ELs~Lc-----~~~v~~ii~s~~g~~~~~~~p~---~-~~vl~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 101 (146)
||.+.+|+-+-. ++-|||+.|.+ +..|.. ++. | -.-|.||+.. -...|+++
T Consensus 100 lie~~~e~LT~nn~p~gqCvICLygfa~-~~~ft~-T~C~Hy~H~~ClaRyl~~------------------~~~~lrqe 159 (368)
T KOG4445|consen 100 LIEHCSEFLTENNHPNGQCVICLYGFAS-SPAFTV-TACDHYMHFACLARYLTE------------------CLTGLRQE 159 (368)
T ss_pred HHHHHHHHcccCCCCCCceEEEEEeecC-CCceee-ehhHHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence 555556654433 34567777765 322222 222 2 3667788764 34678888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047467 102 HNELRRQLEEEKEQEKIL 119 (146)
Q Consensus 102 ~~~l~~el~~ek~~~~~l 119 (146)
+.+++.++...+.+.+.+
T Consensus 160 ~q~~~~~~qh~~~~~eav 177 (368)
T KOG4445|consen 160 IQDAQKERQHMKEQVEAV 177 (368)
T ss_pred HHHHHHHHHHhhhhHhhh
Confidence 888888777777776666
No 68
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.72 E-value=2.5e+02 Score=18.94 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQMRRG 125 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~ 125 (146)
.++..+...+..+..+++...++...++..++.
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555443
No 69
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=22.71 E-value=2.8e+02 Score=19.90 Aligned_cols=13 Identities=0% Similarity=0.253 Sum_probs=10.6
Q ss_pred chHHHHHHhhCCC
Q 047467 64 SVEAVANRFLGMN 76 (146)
Q Consensus 64 ~~~~vl~ry~~~~ 76 (146)
.+.+||+.|...+
T Consensus 39 el~~iLe~y~~~~ 51 (132)
T PF09432_consen 39 ELQSILEKYNTPS 51 (132)
T ss_pred HHHHHHHHHcCCC
Confidence 4799999998843
No 70
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=22.65 E-value=76 Score=23.42 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=15.5
Q ss_pred hhcCCceEEEEecCCCCCee
Q 047467 40 TLTGSEIAVVVFSQSGKPYT 59 (146)
Q Consensus 40 ~Lc~~~v~~ii~s~~g~~~~ 59 (146)
.-|++.|-+++|||.-+.|.
T Consensus 109 p~c~iKvL~LlYs~kk~~fl 128 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFL 128 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEE
T ss_pred CCCceEEEEEEEcCCCceEE
Confidence 46889999999999877654
No 71
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.51 E-value=78 Score=27.75 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 94 RINELNQQHNELRRQLEEEKEQEKIL 119 (146)
Q Consensus 94 ~~~~l~~~~~~l~~el~~ek~~~~~l 119 (146)
++++|.+++++|++|++..+++..+.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 45555555555555555444444444
No 72
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=22.30 E-value=2.8e+02 Score=21.09 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=28.8
Q ss_pred CCeee-cCC-chHHHHHHhhCCCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 56 KPYTF-GHP-SVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKIL 119 (146)
Q Consensus 56 ~~~~~-~~p-~~~~vl~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l 119 (146)
.+|.| ++| .++..++.|...-+ ..-.+..+...+..|..++++-..+...+
T Consensus 107 ~~Y~~~~t~~~lD~a~~~~~~ll~-------------~~i~lAe~E~~l~~L~~ei~kT~rRVNal 159 (201)
T PRK02195 107 IEYSLLNTPIWVDTGIELLKELVQ-------------LKIEAEVLQERLLLLEEELRKTTQRVNLF 159 (201)
T ss_pred CCcCCccCCHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45655 333 47888888865421 12234455566666666666666665544
No 73
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.28 E-value=2.1e+02 Score=17.95 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
..+..++..++.+++..+.++..|+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544444433
No 74
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=22.23 E-value=92 Score=27.94 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=23.4
Q ss_pred EEEEecCC-----------CCCeeecCCch---HHHHHHhhCCC
Q 047467 47 AVVVFSQS-----------GKPYTFGHPSV---EAVANRFLGMN 76 (146)
Q Consensus 47 ~~ii~s~~-----------g~~~~~~~p~~---~~vl~ry~~~~ 76 (146)
-+||||++ |+||.||..+- -.||+.|+-.+
T Consensus 545 KiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~ 588 (776)
T KOG1123|consen 545 KIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNP 588 (776)
T ss_pred eEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCC
Confidence 37899988 99999987653 47899987643
No 75
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.22 E-value=2.7e+02 Score=19.11 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047467 94 RINELNQQHNELRRQLEEEKEQEKILTQMRRG 125 (146)
Q Consensus 94 ~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~ 125 (146)
.+..|..++..|.++...+.-++..|++.+..
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555545444455555555555443
No 76
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=21.90 E-value=1.3e+02 Score=20.13 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=25.5
Q ss_pred hcCCceEEEEecCCC-CCeeecCCc-hHHHHHHhhCCC
Q 047467 41 LTGSEIAVVVFSQSG-KPYTFGHPS-VEAVANRFLGMN 76 (146)
Q Consensus 41 Lc~~~v~~ii~s~~g-~~~~~~~p~-~~~vl~ry~~~~ 76 (146)
+|..+--|.|+.|.| -.|...+|. +.+|++.+...+
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~~ 81 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALEG 81 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhcC
Confidence 488888888887777 344445565 789999887643
No 77
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=21.87 E-value=95 Score=25.36 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=20.1
Q ss_pred hhhcCCceEEEEecCCC--CCeee-cCCc
Q 047467 39 VTLTGSEIAVVVFSQSG--KPYTF-GHPS 64 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g--~~~~~-~~p~ 64 (146)
+++-|..+|+++|+++| |.|.. |.+.
T Consensus 82 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~~ 110 (338)
T cd01370 82 GVLNGYNATVFAYGATGAGKTHTMLGTDS 110 (338)
T ss_pred HHHCCCCceEEeeCCCCCCCeEEEcCCCC
Confidence 45789999999999875 77764 6543
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.83 E-value=1.1e+02 Score=24.36 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=16.0
Q ss_pred HhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhC
Q 047467 36 CELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLG 74 (146)
Q Consensus 36 ~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~ 74 (146)
--|+.|++|-+....+.|. .+...+++++..-+.+...
T Consensus 10 ~~~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~le~ 47 (263)
T PRK10803 10 LSLSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQLER 47 (263)
T ss_pred HHHHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHHHH
Confidence 3456666643333333332 1122345555544444443
No 79
>PF09638 Ph1570: Ph1570 protein; InterPro: IPR018596 This entry includes a hypothetical protein from Pyrococcus horikoshii, which has no known function. It contains six alpha helices and eight beta strands and is thought to be monomeric. ; PDB: 2HQ4_B.
Probab=21.67 E-value=89 Score=22.63 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=21.6
Q ss_pred EEecCCCCCeeecCCchHHHHHHhhCC
Q 047467 49 VVFSQSGKPYTFGHPSVEAVANRFLGM 75 (146)
Q Consensus 49 ii~s~~g~~~~~~~p~~~~vl~ry~~~ 75 (146)
.+..+.|..|.|.-|++...|=+|..+
T Consensus 125 fild~~g~LfvFnKPs~~e~ilKYig~ 151 (152)
T PF09638_consen 125 FILDERGRLFVFNKPSARELILKYIGM 151 (152)
T ss_dssp EEE-TTSEEEEESSTTHHHHHHTTTTT
T ss_pred eEECCCceEEEEcCccHHHHHHHHHhc
Confidence 345677899999999999999998753
No 80
>PRK13294 F420-0--gamma-glutamyl ligase; Provisional
Probab=21.40 E-value=88 Score=26.98 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=23.1
Q ss_pred HhhhhhcCCceEEEEecCCCCCeeecCCc
Q 047467 36 CELVTLTGSEIAVVVFSQSGKPYTFGHPS 64 (146)
Q Consensus 36 ~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~ 64 (146)
.+|.-.||++|+|||....|.++-.|...
T Consensus 134 ~~l~~~~g~~v~vii~Dt~gr~~r~g~~~ 162 (448)
T PRK13294 134 AGLRERLGVDVAVVVTDTMGRAWRNGQTD 162 (448)
T ss_pred HHHHHHHCCCEEEEEecCCCCccccCccc
Confidence 46777899999999999988877665543
No 81
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=21.16 E-value=40 Score=23.82 Aligned_cols=15 Identities=20% Similarity=0.698 Sum_probs=12.0
Q ss_pred EecCCCCCeeecCCc
Q 047467 50 VFSQSGKPYTFGHPS 64 (146)
Q Consensus 50 i~s~~g~~~~~~~p~ 64 (146)
+++|.|....||.|.
T Consensus 81 l~aP~gs~V~YGQP~ 95 (121)
T PF04019_consen 81 LYAPEGSVVLYGQPG 95 (121)
T ss_pred HhCCCCCEEEECCCC
Confidence 355778889999997
No 82
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.10 E-value=3.2e+02 Score=21.78 Aligned_cols=43 Identities=12% Similarity=0.062 Sum_probs=33.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 047467 91 RQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKETQPRWWET 135 (146)
Q Consensus 91 ~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~~~~~w~~ 135 (146)
...++..|.++|..+.+.++.++++....+..+..+.. .|++.
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~--~~~~~ 220 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR--SSSDS 220 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--Ccccc
Confidence 46788899999999999999999988888777766544 44443
No 83
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=21.09 E-value=2.5e+02 Score=18.24 Aligned_cols=17 Identities=41% Similarity=0.689 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047467 97 ELNQQHNELRRQLEEEK 113 (146)
Q Consensus 97 ~l~~~~~~l~~el~~ek 113 (146)
+|..++.+++.+++...
T Consensus 2 eL~~~~~~l~~~~~~~~ 18 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERR 18 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555555554433
No 84
>COG3411 Ferredoxin [Energy production and conversion]
Probab=21.01 E-value=97 Score=19.51 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=21.6
Q ss_pred EEEEecCCCCCeeecCCc-hHHHHHHhhCCC
Q 047467 47 AVVVFSQSGKPYTFGHPS-VEAVANRFLGMN 76 (146)
Q Consensus 47 ~~ii~s~~g~~~~~~~p~-~~~vl~ry~~~~ 76 (146)
.++++.|+|-.|..-+|. ++.|++..+...
T Consensus 18 Pvl~vYpegvWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 18 PVLVVYPEGVWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CEEEEecCCeeEeccCHHHHHHHHHHHHhCC
Confidence 355666778888776655 789998887643
No 85
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=20.98 E-value=1.2e+02 Score=24.73 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.8
Q ss_pred hhhcCCceEEEEecCCC--CCee-ecCC
Q 047467 39 VTLTGSEIAVVVFSQSG--KPYT-FGHP 63 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g--~~~~-~~~p 63 (146)
+++-|..+|+++|+++| |.|. ||++
T Consensus 76 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 103 (333)
T cd01371 76 SVLEGYNGTIFAYGQTGTGKTFTMEGVR 103 (333)
T ss_pred HHhCCCceeEEecCCCCCCCcEeecCCC
Confidence 67889999999999875 7776 4644
No 86
>KOG3718 consensus Carnitine O-acyltransferase CROT [Lipid transport and metabolism]
Probab=20.58 E-value=2.9e+02 Score=24.53 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=17.3
Q ss_pred cCCCCCeeecCCchHHHHHHhhCCC
Q 047467 52 SQSGKPYTFGHPSVEAVANRFLGMN 76 (146)
Q Consensus 52 s~~g~~~~~~~p~~~~vl~ry~~~~ 76 (146)
|-.+...+-+=|+....|.+|...-
T Consensus 15 s~qdsLPSLPlPeLeETleKYl~s~ 39 (609)
T KOG3718|consen 15 SFQDSLPSLPLPELEETLEKYLSSI 39 (609)
T ss_pred cccccCCCCCCchHHHHHHHHHHhc
Confidence 3344444555578999999998764
No 87
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.57 E-value=1e+02 Score=23.83 Aligned_cols=13 Identities=8% Similarity=0.279 Sum_probs=8.5
Q ss_pred hHHHHHHhhCCCC
Q 047467 65 VEAVANRFLGMNH 77 (146)
Q Consensus 65 ~~~vl~ry~~~~~ 77 (146)
+.+-|++|.....
T Consensus 44 F~sALe~f~sl~~ 56 (201)
T PF11172_consen 44 FKSALEQFKSLVN 56 (201)
T ss_pred HHHHHHHHHHhhC
Confidence 5667777776643
No 88
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=20.21 E-value=2.3e+02 Score=17.51 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQM 122 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~~ 122 (146)
..+..|..++.+|..++..++.++..|+..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888887777777777777544
No 89
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=20.15 E-value=1e+02 Score=17.88 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=21.5
Q ss_pred hhcCCceEEEEecCCCCCeeecCCchHHHHH
Q 047467 40 TLTGSEIAVVVFSQSGKPYTFGHPSVEAVAN 70 (146)
Q Consensus 40 ~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ 70 (146)
++-.+..+|+|+. +| .+.+.+|.+..++.
T Consensus 6 l~~~~~~~i~i~d-~~-~i~~~N~~~~~l~g 34 (64)
T PF13188_consen 6 LFDNSPDGILIID-GG-RIIYVNPAFEELFG 34 (64)
T ss_dssp HHCCSSSEEEEEE-TS-BEEEE-HHHHHHHC
T ss_pred HHHcCccceEEEE-CC-ChHHhhHHHHHHhC
Confidence 4557788999999 55 78888888776664
No 90
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=20.15 E-value=1.1e+02 Score=24.80 Aligned_cols=24 Identities=33% Similarity=0.738 Sum_probs=18.9
Q ss_pred hhhcCCceEEEEecCCC--CCeee-cC
Q 047467 39 VTLTGSEIAVVVFSQSG--KPYTF-GH 62 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g--~~~~~-~~ 62 (146)
+++-|..+|+++|+++| |.|.. |.
T Consensus 72 ~~~~G~~~~i~ayG~tgSGKT~tl~G~ 98 (329)
T cd01366 72 SALDGYNVCIFAYGQTGSGKTYTMEGP 98 (329)
T ss_pred HHhCCCceEEEEeCCCCCCCcEEecCC
Confidence 45679999999999875 77754 55
No 91
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=20.12 E-value=3.2e+02 Score=20.08 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCChhhc
Q 047467 107 RQLEEEKEQEKILTQMRRGKETQPRWWETPVDEHNLQEL 145 (146)
Q Consensus 107 ~el~~ek~~~~~l~~~~~~~~~~~~~w~~~l~~L~~eEL 145 (146)
......++++..++..+...... .+++.|+.+|+
T Consensus 103 ~~~~~s~~~i~~l~keL~~i~~~-----~P~e~mT~dd~ 136 (161)
T PF05873_consen 103 EFEAESKKRIAELEKELANIESA-----RPFEQMTVDDY 136 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----CChHhCCHHHH
Confidence 33444455666666666666554 26778877764
No 92
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.05 E-value=2.8e+02 Score=18.93 Aligned_cols=11 Identities=36% Similarity=0.613 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 047467 101 QHNELRRQLEE 111 (146)
Q Consensus 101 ~~~~l~~el~~ 111 (146)
++.+|+.++..
T Consensus 73 qL~~Lk~kl~~ 83 (100)
T PF04568_consen 73 QLKKLKEKLKE 83 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444444
Done!