Query 047467
Match_columns 146
No_of_seqs 131 out of 1249
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 19:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 1.7E-37 5.8E-42 207.8 3.2 79 5-83 1-79 (90)
2 1egw_A MADS box transcription 100.0 1.2E-37 4.2E-42 203.5 2.2 74 5-78 1-74 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 7.2E-37 2.4E-41 208.0 1.3 75 1-75 13-87 (100)
4 1hbx_A SRF, serum response fac 100.0 3.6E-37 1.2E-41 206.9 -0.2 74 1-74 7-80 (92)
5 1k6o_B SRF, serum response fac 100.0 1.7E-36 5.7E-41 207.4 -0.0 72 1-72 6-77 (103)
6 2yy0_A C-MYC-binding protein; 76.5 8.9 0.0003 22.3 5.7 31 94-124 20-50 (53)
7 3l4q_C Phosphatidylinositol 3- 45.1 43 0.0015 24.1 5.3 59 67-125 77-135 (170)
8 2rpa_A Katanin P60 ATPase-cont 42.7 18 0.0006 22.7 2.5 34 32-76 16-49 (78)
9 1nkp_B MAX protein, MYC proto- 41.9 59 0.002 20.0 7.5 37 91-127 45-81 (83)
10 3efg_A Protein SLYX homolog; x 38.7 47 0.0016 20.6 4.1 37 90-126 25-61 (78)
11 1t6f_A Geminin; coiled-coil, c 36.1 51 0.0017 17.5 4.0 25 96-120 10-34 (37)
12 2dgc_A Protein (GCN4); basic d 35.8 66 0.0023 19.0 4.3 28 93-120 30-57 (63)
13 1uii_A Geminin; human, DNA rep 35.2 82 0.0028 19.9 4.8 30 96-125 49-78 (83)
14 2wg5_A General control protein 34.3 54 0.0019 21.5 4.1 28 93-120 7-34 (109)
15 2oqq_A Transcription factor HY 33.8 62 0.0021 17.8 5.5 32 93-124 10-41 (42)
16 2phn_A F420-0:gamma-glutamyl l 33.5 7.2 0.00025 30.0 -0.5 29 36-64 137-165 (254)
17 2oxj_A Hybrid alpha/beta pepti 33.4 55 0.0019 17.1 4.5 29 95-123 3-31 (34)
18 1hjb_A Ccaat/enhancer binding 32.7 96 0.0033 19.7 5.5 36 93-128 43-78 (87)
19 1m2d_A [2Fe-2S] ferredoxin; th 31.7 22 0.00077 23.1 1.8 29 46-75 63-92 (110)
20 2z5i_A TM, general control pro 30.9 77 0.0026 18.0 5.8 38 90-127 9-46 (52)
21 2ky6_A Mediator of RNA polymer 30.5 34 0.0011 24.6 2.6 21 39-59 116-136 (166)
22 2pnv_A Small conductance calci 30.2 73 0.0025 17.5 5.1 32 93-124 9-40 (43)
23 1kd8_B GABH BLL, GCN4 acid bas 29.7 68 0.0023 17.0 5.0 29 95-123 3-31 (36)
24 3m48_A General control protein 28.2 69 0.0024 16.7 3.6 24 97-120 4-27 (33)
25 1a93_B MAX protein, coiled coi 27.0 75 0.0026 16.7 4.7 27 99-125 6-32 (34)
26 3twe_A Alpha4H; unknown functi 26.9 61 0.0021 15.6 3.8 17 107-123 8-24 (27)
27 2w6b_A RHO guanine nucleotide 26.9 99 0.0034 18.0 5.5 33 92-124 16-48 (56)
28 1nkp_A C-MYC, MYC proto-oncoge 26.6 1.2E+02 0.0042 18.9 5.6 38 90-127 49-86 (88)
29 1wlq_A Geminin; coiled-coil; 2 26.2 1.3E+02 0.0043 19.1 4.5 29 96-124 41-69 (83)
30 3nr7_A DNA-binding protein H-N 26.0 1.3E+02 0.0044 19.0 6.2 8 138-145 71-78 (86)
31 2l5g_B Putative uncharacterize 25.0 94 0.0032 17.1 5.2 29 93-121 9-37 (42)
32 3mud_A DNA repair protein XRCC 24.8 1.7E+02 0.0058 21.1 5.6 36 90-125 132-167 (175)
33 3nrf_A APAG protein; structura 24.5 12 0.00041 25.0 -0.6 43 15-62 22-64 (106)
34 1deb_A APC protein, adenomatou 24.2 1.1E+02 0.0037 17.5 3.9 14 96-109 13-26 (54)
35 2vlg_A Sporulation kinase A; h 23.9 68 0.0023 20.2 3.1 27 42-69 6-32 (111)
36 1s94_A S-syntaxin; three helix 23.8 1.5E+02 0.0052 20.6 5.2 33 94-126 37-69 (180)
37 3c3f_A Alpha/beta peptide with 23.6 88 0.003 16.3 4.5 27 96-122 4-30 (34)
38 2zvv_Y Cyclin-dependent kinase 23.5 19 0.00065 17.6 0.2 12 18-29 15-26 (26)
39 2zxx_A Geminin; coiled-coil, c 23.4 1.2E+02 0.0041 19.0 4.0 28 96-123 37-64 (79)
40 1j1d_C Troponin I, TNI; THIN f 23.3 1.5E+02 0.005 20.4 4.8 39 103-146 25-64 (133)
41 3mq7_A Bone marrow stromal ant 22.3 1.8E+02 0.0063 19.5 5.4 30 94-123 72-101 (121)
42 3rrk_A V-type ATPase 116 kDa s 21.8 2.7E+02 0.0094 21.3 7.0 50 65-119 201-252 (357)
43 2cly_B ATP synthase D chain, m 20.6 2.2E+02 0.0077 19.9 6.0 37 104-145 99-135 (160)
44 2hq4_A Hypothetical protein PH 20.6 63 0.0022 22.5 2.4 26 49-74 134-159 (161)
45 2wt7_A Proto-oncogene protein 20.0 1.4E+02 0.0048 17.3 5.4 30 94-123 24-53 (63)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.7e-37 Score=207.77 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=75.4
Q ss_pred ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCCCCCCCCCC
Q 047467 5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNI 83 (146)
Q Consensus 5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~~~~~~~~~ 83 (146)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.||+||+..++++...+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~ 79 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRT 79 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEEC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887766544
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.2e-37 Score=203.54 Aligned_cols=74 Identities=34% Similarity=0.536 Sum_probs=70.2
Q ss_pred ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCCCCC
Q 047467 5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHL 78 (146)
Q Consensus 5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~~~~ 78 (146)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.||+||+..+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=7.2e-37 Score=208.05 Aligned_cols=75 Identities=43% Similarity=0.624 Sum_probs=71.1
Q ss_pred CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCC
Q 047467 1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGM 75 (146)
Q Consensus 1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~ 75 (146)
+++|||+||+|++|+|+.+|++||+|||.||||||+||||||||+||||||||+|++|+|+||++..||++|.+.
T Consensus 13 ~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~ 87 (100)
T 1mnm_A 13 GQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR 87 (100)
T ss_dssp --CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred CCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999653
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=3.6e-37 Score=206.93 Aligned_cols=74 Identities=41% Similarity=0.573 Sum_probs=71.3
Q ss_pred CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhC
Q 047467 1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLG 74 (146)
Q Consensus 1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~ 74 (146)
|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|++|++++||++|.+
T Consensus 7 k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 7 KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999987654
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.7e-36 Score=207.39 Aligned_cols=72 Identities=40% Similarity=0.564 Sum_probs=70.0
Q ss_pred CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHh
Q 047467 1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRF 72 (146)
Q Consensus 1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry 72 (146)
|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||+++
T Consensus 6 k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 6 KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999874
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.55 E-value=8.9 Score=22.26 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 94 RINELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 94 ~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
.+..|..+...|+.+++.+.+++..+.....
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888777777765543
No 7
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=45.12 E-value=43 Score=24.07 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHHHhhCCCCCCCCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047467 67 AVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRG 125 (146)
Q Consensus 67 ~vl~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~ 125 (146)
.++++|.....++.-............++..++..-..|.+.|......+..+++.+-.
T Consensus 77 ~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemns 135 (170)
T 3l4q_C 77 EYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNS 135 (170)
T ss_dssp GGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556655544333222222333456777888888888888888777776666555443
No 8
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.71 E-value=18 Score=22.71 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=28.0
Q ss_pred hhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCCC
Q 047467 32 YKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMN 76 (146)
Q Consensus 32 ~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~~ 76 (146)
.|+|.|.+.+++=+.|++.|.- +..-|++|...-
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~ 49 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhc
Confidence 5889999999999998887765 677888997764
No 9
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=41.93 E-value=59 Score=19.96 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047467 91 RQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKE 127 (146)
Q Consensus 91 ~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~ 127 (146)
....|..|..+...+..+++.++.++..|+..+....
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566788888888898999999888888887776544
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.73 E-value=47 Score=20.63 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047467 90 HRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGK 126 (146)
Q Consensus 90 ~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~ 126 (146)
+....+..||..+.+.+.+++.+..+...|.+..+..
T Consensus 25 fqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 25 FQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777777777777776555543
No 11
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.15 E-value=51 Score=17.53 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILT 120 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~ 120 (146)
..|+..++.-.+++..+++++..|.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4566677777777777777777665
No 12
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.85 E-value=66 Score=18.99 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILT 120 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~ 120 (146)
..+..|..++..|..+...+..++..|+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555444444
No 13
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.20 E-value=82 Score=19.94 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILTQMRRG 125 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~~~~~~ 125 (146)
..|+.+++.++.++...++.++.|+....+
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888777777765543
No 14
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.29 E-value=54 Score=21.48 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILT 120 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~ 120 (146)
.++..|..+...++.++...+++++.++
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777777776665
No 15
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.80 E-value=62 Score=17.80 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
.+...+.....+|.+.+.-+..++..|++.++
T Consensus 10 ~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 45566667777777777777777777776553
No 16
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=33.53 E-value=7.2 Score=30.02 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=23.6
Q ss_pred HhhhhhcCCceEEEEecCCCCCeeecCCc
Q 047467 36 CELVTLTGSEIAVVVFSQSGKPYTFGHPS 64 (146)
Q Consensus 36 ~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~ 64 (146)
.+|.-.+|++|+|||+.+.|+++..+.+.
T Consensus 137 ~~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 137 RRILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 35567789999999999999888776654
No 17
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.38 E-value=55 Score=17.13 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 95 INELNQQHNELRRQLEEEKEQEKILTQMR 123 (146)
Q Consensus 95 ~~~l~~~~~~l~~el~~ek~~~~~l~~~~ 123 (146)
+..|...++.|..+.+.++.+...|+...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556666666666666666666665544
No 18
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.67 E-value=96 Score=19.67 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQMRRGKET 128 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~ 128 (146)
..+..|..+...|+.+++.++.++..|.......-+
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 445566666666666676666666666666655433
No 19
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=31.68 E-value=22 Score=23.06 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=18.8
Q ss_pred eEEEEecCCCCCeeecCCc-hHHHHHHhhCC
Q 047467 46 IAVVVFSQSGKPYTFGHPS-VEAVANRFLGM 75 (146)
Q Consensus 46 v~~ii~s~~g~~~~~~~p~-~~~vl~ry~~~ 75 (146)
-.|+|+ |+|..|...+|. +..||+.+...
T Consensus 63 P~v~V~-P~~~~y~~vt~e~v~~il~~~l~~ 92 (110)
T 1m2d_A 63 PVVVVY-PDGVWYGQVKPEDVDEIVEKHLKG 92 (110)
T ss_dssp SCEEEE-TTTEEECSCCGGGHHHHHHHTTTT
T ss_pred CEEEEE-eCCEEEecCCHHHHHHHHHHHHHC
Confidence 345555 777555555555 88999997543
No 20
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.95 E-value=77 Score=18.04 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047467 90 HRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKE 127 (146)
Q Consensus 90 ~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~ 127 (146)
+....+..|...+..|..++..++.+...+.+.+....
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999888887776543
No 21
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=30.48 E-value=34 Score=24.58 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=17.3
Q ss_pred hhhcCCceEEEEecCCCCCee
Q 047467 39 VTLTGSEIAVVVFSQSGKPYT 59 (146)
Q Consensus 39 s~Lc~~~v~~ii~s~~g~~~~ 59 (146)
+.-|.+.|-+++|||+-+.|.
T Consensus 116 ~~~ceiKvLiLlYs~~k~afl 136 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFM 136 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEE
T ss_pred CCCcceEEEEEEEcCCcceee
Confidence 345999999999999888774
No 22
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.15 E-value=73 Score=17.55 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
+-+.+++...+.|...+..+..+++.|.+...
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888876654
No 23
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.67 E-value=68 Score=17.00 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 95 INELNQQHNELRRQLEEEKEQEKILTQMR 123 (146)
Q Consensus 95 ~~~l~~~~~~l~~el~~ek~~~~~l~~~~ 123 (146)
+..|...+++|......++.+...|+...
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34455555555555555555555555443
No 24
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.22 E-value=69 Score=16.66 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 97 ELNQQHNELRRQLEEEKEQEKILT 120 (146)
Q Consensus 97 ~l~~~~~~l~~el~~ek~~~~~l~ 120 (146)
.|...+++|..+...+..+...|+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444444444444444444
No 25
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.98 E-value=75 Score=16.66 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047467 99 NQQHNELRRQLEEEKEQEKILTQMRRG 125 (146)
Q Consensus 99 ~~~~~~l~~el~~ek~~~~~l~~~~~~ 125 (146)
+.+....+.+++.+++++..|+..++.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 334444555666667777777666653
No 26
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.92 E-value=61 Score=15.62 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047467 107 RQLEEEKEQEKILTQMR 123 (146)
Q Consensus 107 ~el~~ek~~~~~l~~~~ 123 (146)
.+++.++++..+++...
T Consensus 8 keledlqerlrklrkkl 24 (27)
T 3twe_A 8 KELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444455555554443
No 27
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.90 E-value=99 Score=17.99 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 92 QVRINELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 92 ~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
.+.+.+|+++..+|..-++.+++-...|+..++
T Consensus 16 kDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 16 KDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666654444544443
No 28
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.61 E-value=1.2e+02 Score=18.94 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=28.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 047467 90 HRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKE 127 (146)
Q Consensus 90 ~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~ 127 (146)
.....|..|..+...+..+++.+..++..|...+....
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888888888888888888888877766543
No 29
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.24 E-value=1.3e+02 Score=19.06 Aligned_cols=29 Identities=10% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILTQMRR 124 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~~~~~ 124 (146)
..|+..++.+++++..+++.+..|+....
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777765544
No 30
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=26.03 E-value=1.3e+02 Score=19.00 Aligned_cols=8 Identities=38% Similarity=0.414 Sum_probs=5.1
Q ss_pred CCCChhhc
Q 047467 138 DEHNLQEL 145 (146)
Q Consensus 138 ~~L~~eEL 145 (146)
+|++.+||
T Consensus 71 ~GI~~eeL 78 (86)
T 3nr7_A 71 DGIDPNEL 78 (86)
T ss_dssp TCCCHHHH
T ss_pred cCCCHHHH
Confidence 56666665
No 31
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.01 E-value=94 Score=17.08 Aligned_cols=29 Identities=10% Similarity=0.323 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 93 VRINELNQQHNELRRQLEEEKEQEKILTQ 121 (146)
Q Consensus 93 ~~~~~l~~~~~~l~~el~~ek~~~~~l~~ 121 (146)
..+...+.++.+..+++...+++...|.+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666555555543
No 32
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=24.80 E-value=1.7e+02 Score=21.06 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=28.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047467 90 HRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRG 125 (146)
Q Consensus 90 ~~~~~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~ 125 (146)
+....+..|+.++..|++++..++.+...+.+.+..
T Consensus 132 ~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 132 YCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999888877766543
No 33
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=24.50 E-value=12 Score=24.96 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=31.2
Q ss_pred cCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecC
Q 047467 15 EKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGH 62 (146)
Q Consensus 15 ~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~ 62 (146)
.++.....||.=.-.-|.++.-+|+ ..|++.|+|+|+.|-..+
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLs-----k~C~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLK-----NSCLVAQSAAGQSFRLDT 64 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECT-----TCEEEEEETTSCEEEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccc-----hhhheeeCcCCCEEEecc
Confidence 3444556666666777777888888 567999999998876644
No 34
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.19 E-value=1.1e+02 Score=17.54 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQL 109 (146)
Q Consensus 96 ~~l~~~~~~l~~el 109 (146)
..|..+...|+.++
T Consensus 13 e~Lk~ENshLrrEL 26 (54)
T 1deb_A 13 EALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHH
Confidence 33333333333333
No 35
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=23.93 E-value=68 Score=20.23 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=17.4
Q ss_pred cCCceEEEEecCCCCCeeecCCchHHHH
Q 047467 42 TGSEIAVVVFSQSGKPYTFGHPSVEAVA 69 (146)
Q Consensus 42 c~~~v~~ii~s~~g~~~~~~~p~~~~vl 69 (146)
-.+.-++++++++| .+.|.||++..++
T Consensus 6 e~~~d~i~v~d~~G-~i~yvn~~~~~~l 32 (111)
T 2vlg_A 6 QTKTDIHAVLASNG-RIIYISANSKLHL 32 (111)
T ss_dssp ---CCEEEEECTTS-BEEEECTTHHHHH
T ss_pred hcCCCEEEEEcCCC-eEEEEChHHHHHh
Confidence 34455677778766 5679999977554
No 36
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.79 E-value=1.5e+02 Score=20.61 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 047467 94 RINELNQQHNELRRQLEEEKEQEKILTQMRRGK 126 (146)
Q Consensus 94 ~~~~l~~~~~~l~~el~~ek~~~~~l~~~~~~~ 126 (146)
.+..+-.++..++..+.........|...+...
T Consensus 37 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 69 (180)
T 1s94_A 37 FMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDI 69 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777776666553
No 37
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=23.64 E-value=88 Score=16.31 Aligned_cols=27 Identities=4% Similarity=0.171 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILTQM 122 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~~~ 122 (146)
..|...+++|..+...+..+...|+..
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 38
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=23.52 E-value=19 Score=17.55 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=7.9
Q ss_pred CCcccccccccc
Q 047467 18 DERLITFSKRRS 29 (146)
Q Consensus 18 ~~r~~tf~kR~~ 29 (146)
+.|.+-|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 456677777764
No 39
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.43 E-value=1.2e+02 Score=18.97 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 96 NELNQQHNELRRQLEEEKEQEKILTQMR 123 (146)
Q Consensus 96 ~~l~~~~~~l~~el~~ek~~~~~l~~~~ 123 (146)
..|+.+++.++.++..+++.+..|....
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777767766665554443
No 40
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=23.28 E-value=1.5e+02 Score=20.38 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccCCCCCCCCCCCCCChhhcC
Q 047467 103 NELRRQLEEEKEQEKIL-TQMRRGKETQPRWWETPVDEHNLQELL 146 (146)
Q Consensus 103 ~~l~~el~~ek~~~~~l-~~~~~~~~~~~~~w~~~l~~L~~eELe 146 (146)
....+++++++++.+.- +..+.++... -+|++||.++|+
T Consensus 25 ~kA~e~l~kE~e~k~eeKkkiLaER~~p-----L~id~ls~~~L~ 64 (133)
T 1j1d_C 25 QIAKQELEREAEERRGEKGRALSTRAQP-----LELAGLGFAELQ 64 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC-----CCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCCCCCHHHHH
Confidence 33445555555543332 3444444432 269999999884
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.32 E-value=1.8e+02 Score=19.52 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 94 RINELNQQHNELRRQLEEEKEQEKILTQMR 123 (146)
Q Consensus 94 ~~~~l~~~~~~l~~el~~ek~~~~~l~~~~ 123 (146)
.+.+|..++..|..+|.....+.+.|+...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355566666666666655555555555444
No 42
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.77 E-value=2.7e+02 Score=21.30 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=25.1
Q ss_pred hHHHHHHhhCCCCCCCCCCcchhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 65 VEAVANRFLGMNHLPNDNIHSLVVG--HRQVRINELNQQHNELRRQLEEEKEQEKIL 119 (146)
Q Consensus 65 ~~~vl~ry~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~l~~el~~ek~~~~~l 119 (146)
+..|++.|.-....-++ ..+ .....+..++.++..+..+++..+++...+
T Consensus 201 v~~il~s~~f~~~~~p~-----~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 201 ARSSLSRLGLAELRFPG-----AYGAMPLGKAAARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp HHHHHHTTTCCBCCCCG-----GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeeccCCc-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777544322211 112 233445566666666666655555544444
No 43
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=20.63 E-value=2.2e+02 Score=19.85 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCChhhc
Q 047467 104 ELRRQLEEEKEQEKILTQMRRGKETQPRWWETPVDEHNLQEL 145 (146)
Q Consensus 104 ~l~~el~~ek~~~~~l~~~~~~~~~~~~~w~~~l~~L~~eEL 145 (146)
....-.+..+++...|+..+......+ +++.|+.+|+
T Consensus 99 ~a~~~~~~s~~ri~~lekeL~~i~~~~-----P~~~mT~dd~ 135 (160)
T 2cly_B 99 SCAEFLTQSKTRIQEYEKELEKMRNII-----PFDQMTIEDL 135 (160)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChHhCCHHHH
Confidence 333444455566666666666665542 6778877764
No 44
>2hq4_A Hypothetical protein PH1570; singleton protein, structural genomics, PSI southeast collaboratory for structural genomics, secsg; 1.99A {Pyrococcus horikoshii} SCOP: d.342.1.1
Probab=20.56 E-value=63 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.494 Sum_probs=21.7
Q ss_pred EEecCCCCCeeecCCchHHHHHHhhC
Q 047467 49 VVFSQSGKPYTFGHPSVEAVANRFLG 74 (146)
Q Consensus 49 ii~s~~g~~~~~~~p~~~~vl~ry~~ 74 (146)
.+..|.|..|.|.-|++...|=+|..
T Consensus 134 filD~kg~LfvFNKPs~~e~ilKYi~ 159 (161)
T 2hq4_A 134 FILDPRGRLFIFNKPSIANKILKYIW 159 (161)
T ss_dssp EEECTTSEEEEESSTTHHHHHHTTTT
T ss_pred eEECCCceEEEecCccHHHHHHHHHh
Confidence 34557789999999999999998875
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=20.02 E-value=1.4e+02 Score=17.31 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047467 94 RINELNQQHNELRRQLEEEKEQEKILTQMR 123 (146)
Q Consensus 94 ~~~~l~~~~~~l~~el~~ek~~~~~l~~~~ 123 (146)
.+..|..++..|..+...+..+...|+...
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554443
Done!