BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047470
(757 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 302/654 (46%), Positives = 407/654 (62%), Gaps = 31/654 (4%)
Query: 118 TTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCEN 177
TTH+ +FL L P+SGLWP++ GQ VI+ ++D+GIWPES SF D GMP +P+RW G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 178 GTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEG 237
GT F+ +CNRKLIGA F+KG+ A V+ +SARD GHGTH +S AGN +G
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVN--ITMNSARDTDGHGTHCASITAGNFAKG 118
Query: 238 VSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGF 297
VSHFGYA GTARG+APRA +A+YK + E + SD++A MDQA+ADGVD++S+S G+
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSF---NEGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 298 DQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFP--RSIHNGAPWITTVGAGTLDRSFHA 355
P + D I+IAS A+ G++V +AGN G P S++NG+PWI V +G DR+F
Sbjct: 176 RFIPLYEDAISIASFGAMMKGVLVSASAGNRG-PGIGSLNNGSPWILCVASGHTDRTFAG 234
Query: 356 TVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSL--NPDEVTGKVVFCDN 413
T+TL NGL +G S FP ++ D+P+ Y K + S L S NP+ +V CD+
Sbjct: 235 TLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVENPENT---IVICDD 291
Query: 414 SNRIDTYSQMEEVDRAGAYAAIFLTDTPDI-DSDEYYIPSLILPTSAGTSIRQYVTGKNK 472
+ D QM + RA AAIF+++ P + S + P +++ G + YV KN
Sbjct: 292 NG--DFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYV--KNS 347
Query: 473 -SKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFI 531
+ ++ F T L TKPAP VA+ S+RGP GI KPDI+APGV +LAA PN+
Sbjct: 348 VTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFAT 407
Query: 532 EIG-NYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAEN 590
IG N L TDY L SGTSMAAPH AG+AA+LKA H +WSP+AIRSA+MTTA P++
Sbjct: 408 SIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRK 467
Query: 591 EI----GVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRR 646
I ATPLD GAGH+DPN+A+DPGL+YDA QDYV LC L + E+Q K + R
Sbjct: 468 PIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARS 527
Query: 647 N-QWNCSQESTDLNYPSFAAVFTNETT----AKNFSRVVKNVGAEDSIYRAVLEFPAGMN 701
+ NCS S DLNYPSF A+++ E + F R V NVG + Y+A L+ P
Sbjct: 528 SASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNST 587
Query: 702 IRIEPSTLKFTQKYQLLDFALSVE-IDRESPRVSYGYLKWIDQY-NHTVSSPVV 753
I + P L F K + + L++ I E + G + W++Q NH+V SP+V
Sbjct: 588 ISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 248/656 (37%), Positives = 358/656 (54%), Gaps = 62/656 (9%)
Query: 118 TTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCEN 177
TT S +FLG + ++ +++G++DTGIWPES SF D+G P P +W G CE
Sbjct: 1 TTRSWDFLGFPLT--VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 178 GTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEG 237
F CNRK+IGARS+ G + D + RD GHGTHT+STAAG V
Sbjct: 59 SNNFR---CNRKIIGARSYHIGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQ 109
Query: 238 VSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG- 296
+ +G GTARG P A +A YKV W + + +D+LA D AIADGVDI+SLS+G
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCW---NDGCSDTDILAAYDDAIADGVDIISLSVGG 166
Query: 297 FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPR--SIHNGAPWITTVGAGTLDRSFH 354
+ YF D IAI S A+E GI+ +AGN G P + + +PW+ +V A T+DR F
Sbjct: 167 ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGG-PNFFTTASLSPWLLSVAASTMDRKFV 225
Query: 355 ATVTLDNGLTFKGISY--FPESVYITDAPLYYGKNDVNKSI-------CHLGSLNPDEVT 405
V + NG +F+G+S F Y PL G++ N C S+NP+ +
Sbjct: 226 TQVQIGNGQSFQGVSINTFDNQYY----PLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLK 281
Query: 406 GKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLIL-PTSAGTSIR 464
GK+V C+ S + + +D GA + ++T D +D Y +PS +L P ++R
Sbjct: 282 GKIVVCEAS--FGPHEFFKSLD--GAAGVLMTSNTRDY-ADSYPLPSSVLDPNDLLATLR 336
Query: 465 QYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAA- 523
+ ++ + F T + AP V SFSSRGP+ + ++KPDI PGV++LAA
Sbjct: 337 YIYSIRSPG---ATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW 393
Query: 524 --VAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581
VAP +G T + + SGTSM+ PH+ G+A +K + WSPAAI+SA+MTT
Sbjct: 394 PSVAP------VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTT 447
Query: 582 AYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMK 641
A P+N N P +G+GH++P KA+ PGL+YDA+ DYV+FLCG GY+ + ++
Sbjct: 448 ASPMNARFN-----PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVR 502
Query: 642 AVIRRNQWNCSQEST----DLNYPSFA-AVFTNETTAKNFSRVVKNVGAEDSIYRAVLEF 696
I + C+ +T DLNYPSF +V ++T + F+R + +V + S YRA++
Sbjct: 503 R-ITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISA 561
Query: 697 PAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTVSSPV 752
P G+ I + P+ L F F L+V + VS L W D H V SP+
Sbjct: 562 PQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS-ASLVWSDGV-HYVRSPI 615
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 122/525 (23%), Positives = 203/525 (38%), Gaps = 103/525 (19%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFH--DKGMPPVPRRWN---GRCENGTAFSPFVCN 187
L A G G ++ +ID G E++ DK + + + E+G + +V N
Sbjct: 18 LQEKASKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV-N 76
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +SK + A V +E HGTH S +GN
Sbjct: 77 DKVAYYHDYSKDGKTA---VDQE-----------HGTHVSGILSGNAPSETKE----PYR 118
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----IMSLSLGFDQTPYF 303
G P A + + +V + +D QAI D V+ ++++S G Y
Sbjct: 119 LEGAMPEAQLLLMRVEIV-----NGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYA 173
Query: 304 N--DVIAIASLSAIENGIVVVCAAGNDG-------FPRSIH---------NGAPWITTVG 345
N D A A G+ +V +AGND P + H A TV
Sbjct: 174 NLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVA 233
Query: 346 AGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPD--E 403
+ + D+ T T+ K + + + + + + + + G D +
Sbjct: 234 SYSPDKQLTETATV------KTDDHQAKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKD 287
Query: 404 VTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAI--------FLTDTPDIDSDEYYIPSLIL 455
V GK+ + + ID ++ +AGA + F + P++D +P+ +
Sbjct: 288 VKGKIALIERGD-IDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ----MPAAFI 342
Query: 456 PTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVA 515
G ++ N K + L T ++ FSS G + G +KPDI A
Sbjct: 343 SRKDGLLLKD-----NSKKTITFNATPKVLPTASDTKLSRFSSWGL--TADGNIKPDIAA 395
Query: 516 PGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSP 571
PG D+L++VA N YA SGTSM+AP VAG+ LL+ + D +P
Sbjct: 396 PGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTP 442
Query: 572 AA----IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
+ + +M++A + + E+E +P GAG +D KA
Sbjct: 443 SERLDLAKKVLMSSATAL-YDEDEKAYF--SPRQQGAGAVDAKKA 484
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 15/121 (12%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIE-IGNYELVTDYALFSGTSMA 551
+ FSSRGP + LKP++VAPG ++AA A + I +Y Y GT+MA
Sbjct: 309 ITDFSSRGP--TADNRLKPEVVAPGNWIIAARASGTSMGQPINDY-----YTAAPGTAMA 361
Query: 552 APHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611
PHVAG+AALL H W+P +++A++ TA V +EI + +GAG ++ K
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIVK--PDEI-----ADIAYGAGRVNAYK 414
Query: 612 A 612
A
Sbjct: 415 A 415
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 70/134 (52%), Gaps = 18/134 (13%)
Query: 221 GHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGM 280
GHGTH +S AAG + G +G+AP A + KVL + SD++ G+
Sbjct: 179 GHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVL--NGQGSGSISDIINGV 229
Query: 281 DQAIAD----GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
D A+ + G+ +++LSLG Q+ D ++ A +A + G+VVV AAGN G P
Sbjct: 230 DWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSG-PNKYTV 288
Query: 337 GAPW----ITTVGA 346
G+P + TVGA
Sbjct: 289 GSPAAASKVITVGA 302
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y +SGTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA ++ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALDNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y +SGTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIXSTLPGN-------------KYGAYSGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA ++ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALDNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP + A+Y V D S
Sbjct: 59 QDDNSHGTHVAGTVAALNNSIGV----------LGVAPSS--ALYAVKVLGDAGSGQYSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGTSMA+P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + S ++ G++ AIA+ +D++++SLG
Sbjct: 63 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--YSWIINGIEWAIANNMDVINMSLG 118
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 28/141 (19%)
Query: 479 RFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYEL 538
+ + T GTK ++ FSS G + G +KPDI APG D+L++VA N
Sbjct: 356 KVLPTASGTK----LSRFSSWGL--TADGNIKPDIAAPGQDILSSVANN----------- 398
Query: 539 VTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSPAA---IRSAIMTTAYPVNFAENE 591
YA SGTS +AP VAG+ LL+ + D +P+ + ++ ++ + E+E
Sbjct: 399 --KYAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVLXSSATALYDEDE 456
Query: 592 IGVVPATPLDFGAGHIDPNKA 612
+P GAG +D KA
Sbjct: 457 KAYF--SPRQQGAGAVDAKKA 475
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 27/203 (13%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFH--DKGMPPVPRRWN---GRCENGTAFSPFVCN 187
L A G G ++ +ID G E++ DK + + + E+G + +V N
Sbjct: 9 LQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV-N 67
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +SK + A V +E HGTH S +GN
Sbjct: 68 DKVAYYHDYSKDGKTA---VDQE-----------HGTHVSGILSGNAPSETKE----PYR 109
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFN--D 305
G P A + + +V + A + A D AI G +++ S G Y N D
Sbjct: 110 LEGAXPEAQLLLXRVEIVNGLADYARNYAQAIRD-AINLGAKVINXSFGNAALAYANLPD 168
Query: 306 VIAIASLSAIENGIVVVCAAGND 328
A A G+ +V +AGND
Sbjct: 169 ETKKAFDYAKSKGVSIVTSAGND 191
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y +SGT MA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGTSMA+P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 216
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + S ++ G++ AIA+ +D++++SLG
Sbjct: 63 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--YSWIINGIEWAIANNMDVINMSLG 118
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y +SGT MA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYSGTXMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPCASLYAVKVLGADGSGQY--SW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPCASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAA---VAPNIPFIEIGNYELVTDYALFSGT 548
HVA FSSRGP G +KPD++APG +L+A +AP+ F N++ + YA GT
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWA--NHD--SKYAYMGGT 254
Query: 549 SMAAPHVAGVAALLK 563
SMA P VAG A L+
Sbjct: 255 SMATPIVAGNVAQLR 269
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
++A D GHGTH + + GN T +G+AP+A++ ++ +
Sbjct: 60 NNANDTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGGLGGLP 108
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S++ QA + G I + S G + +N + ++ AAGN+G
Sbjct: 109 SNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEG 164
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA ++ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALDNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 20/98 (20%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTD-YALFSGTSMAA 552
ASFS+ G D D+ APG D+L+ V + G V+D Y+ +GTSMA
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILSTV-------DSGTRRPVSDAYSFMAGTSMAT 279
Query: 553 PHVAGVAALL----KAIHRDWSPAAIRSAIMTTAYPVN 586
PHV+GVAAL+ +++++ +PA ++ +++T P N
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN 317
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 20/98 (20%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTD-YALFSGTSMAA 552
ASFS+ G D D+ APG D+L+ V + G V+D Y+ +GTSMA
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILSTV-------DSGTRRPVSDAYSFMAGTSMAT 279
Query: 553 PHVAGVAALL----KAIHRDWSPAAIRSAIMTTAYPVN 586
PHV+GVAAL+ +++++ +PA ++ +++T P N
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN 317
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV +++ + N Y SGT+MA+P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + S ++ G++ AIA+ +D++++SLG
Sbjct: 63 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--YSWIINGIEWAIANNMDVINMSLG 118
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGTSMA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAKSGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPCASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 20/98 (20%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTD-YALFSGTSMAA 552
ASFS+ G D D+ APG D+L+ V + G V+D Y+ +GTSMA
Sbjct: 235 ASFSNYGVDV--------DLAAPGQDILSTV-------DSGTRRPVSDAYSFMAGTSMAT 279
Query: 553 PHVAGVAALL----KAIHRDWSPAAIRSAIMTTAYPVN 586
PHV+GVAAL+ +++++ +PA ++ +++T P N
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN 317
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV +++ + N Y SGT+MA+P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSIVSTLPGN-------------KYGAKSGTAMASP 216
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + S ++ G++ AIA+ +D++++SLG
Sbjct: 63 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--YSWIINGIEWAIANNMDVINMSLG 118
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GT MA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GT MA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTXMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGT MA+P
Sbjct: 178 ASFSSVGPEL--------DVMAPGVSICSTLPGN-------------KYGAKSGTXMASP 216
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENT 244
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + S ++ G++ AIA+ +D++++SLG
Sbjct: 63 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--YSWIINGIEWAIANNMDVINMSLG 118
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 23/91 (25%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
+ASFS+ G D+VAPGVD+++ + N YA SGTSMA
Sbjct: 190 RLASFSNYGT--------WVDVVAPGVDIVSTITGN-------------RYAYMSGTSMA 228
Query: 552 APHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
+PHVAG+AALL + R+ IR AI TA
Sbjct: 229 SPHVAGLAALLASQGRN--NIEIRQAIEQTA 257
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 25/131 (19%)
Query: 207 VSKEYDFDSA----RDFFGHGTHTSSTAAG--NHVEGVSHFGYAKGTARGIAPRAHVAMY 260
V K YDF D HGTH + AA N+ G++ G+AP +
Sbjct: 53 VIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIA----------GMAPNTRILAV 102
Query: 261 KVLWATDTEESAA-SDVLAGMDQAIADGVDIMSLSLGFD-QTPYFNDVIAIASLSAIENG 318
+ L D S SD+ + A G ++++LSLG D T + + A G
Sbjct: 103 RAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVNYA----WNKG 155
Query: 319 IVVVCAAGNDG 329
VVV AAGN+G
Sbjct: 156 SVVVAAAGNNG 166
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGT MA+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAKSGTXMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ +D++++SLG
Sbjct: 107 IINGIEWAIANNMDVINMSLG 127
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y SGT MA+P
Sbjct: 175 ASFSSVGPEL--------DVMAPGVSIWSTLPGN-------------KYGAKSGTXMASP 213
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENT 241
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + S ++ G++ AIA+ +D++++SLG
Sbjct: 60 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--YSWIINGIEWAIANNMDVINMSLG 115
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ D++APGV + + + N Y ++GTS A+P
Sbjct: 187 ASFSSVGPEL--------DVMAPGVSIQSTLPGN-------------KYGAYNGTSXASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAG AAL+ + H +W+ +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL A + + S
Sbjct: 59 QDNNSHGTHVAGTVAALNNSIGV----------LGVAPSASLYAVKVLGADGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLG 296
++ G++ AIA+ D+++ SLG
Sbjct: 107 IINGIEWAIANNXDVINXSLG 127
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
A FSS GP+ D++APGV + + + Y SGTSMA+P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGG-------------KYGALSGTSMASP 216
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H +W+ +RS++ TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + AS ++ G++ AIA+ +D++++SLG
Sbjct: 63 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--ASWIINGIEWAIANNMDVINMSLG 118
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GTSMA PHVAGVAAL+K + WS
Sbjct: 191 DIVAPGVNVQST------------YPGST-YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPSAELYAVKVL--GASGSGSV 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 206 NVSKEYDF--------DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHV 257
NV + DF +S D GHGTH + TA ++ G + G+AP A +
Sbjct: 47 NVEQCKDFTGATTPINNSCTDRNGHGTHVAGTA-------LADGGSDQAGIYGVAPDADL 99
Query: 258 AMYKVLWATDTEESAASDVLAGM----DQAIADGVD-IMSLSLGFDQTPYFNDVIAIASL 312
YKVL D+ + D+ A + DQA A G I+S+SLG + N +I+ A
Sbjct: 100 WAYKVLL--DSGSGYSDDIAAAIRHAADQATATGTKTIISMSLG---SSANNSLISSAVN 154
Query: 313 SAIENGIVVVCAAGNDGFPR 332
A G+++V AAGN G+ +
Sbjct: 155 YAYSKGVLIVAAAGNSGYSQ 174
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNF 587
Y SGTSMA PHV+G+AA + A + S +RS + A V+
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDI 288
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 9/75 (12%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAA---VAPNIPFIEIGNYELVTDYALFSGT 548
HVA FSSRGP G +KPD++APG +L+A +AP+ F N++ + YA GT
Sbjct: 201 HVAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWA--NHD--SKYAYXGGT 254
Query: 549 SMAAPHVAGVAALLK 563
S A P VAG A L+
Sbjct: 255 SXATPIVAGNVAQLR 269
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
++A D GHGTH + + GN T +G+AP+A++ ++ +
Sbjct: 60 NNANDTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGGLGGLP 108
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S++ QA + G I + S G + +N + ++ AAGN+G
Sbjct: 109 SNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEG 164
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 25/140 (17%)
Query: 206 NVSKEYDF--------DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHV 257
NV + DF +S D GHGTH + TA ++ G + G+AP A +
Sbjct: 47 NVEQCKDFTGATTPINNSCTDRNGHGTHVAGTA-------LADGGSDQAGIYGVAPDADL 99
Query: 258 AMYKVLWATDTEESAASDVLAGM----DQAIADGVD-IMSLSLGFDQTPYFNDVIAIASL 312
YKVL D+ + D+ A + DQA A G I+S+SLG + N +I+ A
Sbjct: 100 WAYKVLL--DSGSGYSDDIAAAIRHAADQATATGTKTIISMSLG---SSANNSLISSAVN 154
Query: 313 SAIENGIVVVCAAGNDGFPR 332
A G+++V AAGN G+ +
Sbjct: 155 YAYSKGVLIVAAAGNSGYSQ 174
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNF 587
Y SGT MA PHV+G+AA + A + S +RS + A V+
Sbjct: 243 YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDI 288
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
A FSS GP+ D++APGV + + + Y SGT+MA+P
Sbjct: 178 APFSSVGPEL--------DVMAPGVSICSTLPGG-------------KYGALSGTAMASP 216
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H +W+ +RS++ TA
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTA 245
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296
SH + GT +AP A + KVL A + + AS ++ G++ AIA+ +D++++SLG
Sbjct: 63 SHGTHVAGTVLAVAPSASLYAVKVLGADGSGQ--ASWIINGIEWAIANNMDVINMSLG 118
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 58/191 (30%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G V +GIIDTGI S H + K++G SF G
Sbjct: 23 GANVKVGIIDTGI----ASSH-------------------------TDLKVVGGASFVSG 53
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVA 258
+ Y+ D GHGTH + T AA ++ GV G+AP +V+
Sbjct: 54 ---------ESYNTDG----NGHGTHVAGTVAALDNTTGV----------LGVAP--NVS 88
Query: 259 MYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENG 318
+Y + + + S +++G++ A +G+D++++SLG P + + A A +G
Sbjct: 89 LYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSLG---GPSGSTALKQAVDKAYASG 145
Query: 319 IVVVCAAGNDG 329
IVVV AAGN G
Sbjct: 146 IVVVAAAGNSG 156
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APGV V + N Y +GTSMA+P
Sbjct: 186 ASFSSVGSEL--------EVMAPGVSVYSTYPSNT-------------YTSLNGTSMASP 224
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + + S + +R+ + +TA
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTA 253
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GTSMA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQS------------TYPGST-YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL A A
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPSAELYAVKVLGADG--RGAI 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GTSMA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQST------------YPGST-YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPNAELYAVKVL--GASGSGSV 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GTSMA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQST------------YPGST-YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPNAELYAVKVL--GASGGGSN 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GTSMA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQS------------TYPGST-YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPSAELYAVKVL--GASGSGSV 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GTSMA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQS------------TYPGST-YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPSAELYAVKVL--GASGSGSY 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G M ++ +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNG---MHVASLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + D++APGV + + + Y ++GTSMA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNGTSMATP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H W+ A +R + +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 16/114 (14%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL +T + + S
Sbjct: 59 QDGSSHGTHVAGTIAALNNSIGV----------LGVAPSASLYAVKVLDSTGSGQY--SW 106
Query: 276 VLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
++ G++ AI++ +D++++SLG P + + A+ +GIVV AAGN+G
Sbjct: 107 IINGIEWAISNNMDVINMSLG---GPTGSTALKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GT MA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQST------------YPGST-YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPNAELYAVKVL--GASGSGSV 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 49/106 (46%), Gaps = 25/106 (23%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA-----------PNIPFIEIGNYELVT 540
VA FSSR D +S G APGV +L+ V N+P G Y
Sbjct: 327 RVAGFSSR-SDGVSVG-------APGVTILSTVPGEDSIGYEGHNENVPATNGGTY---- 374
Query: 541 DYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVN 586
DY + GTSMAAPHV GV A+L + P IR + TA+ N
Sbjct: 375 DY--YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFN 418
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GT MA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQS------------TYPGST-YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA ++ GV G+AP A + KVL A+ + A
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGV----------LGVAPSAELYAVKVLGASGS--GAI 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN+G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNEG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GT MA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQS------------TYPGST-YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA ++ GV G+AP A + KVL A+ + A
Sbjct: 55 STQDGNGHGTHVAGTIAALDNSIGV----------LGVAPSAELYAVKVLGASGS--GAI 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G+ + +LSLG +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 506 PGILKP-------DIVAPGVDVLAAVAPNIPFIEIGNYELVT-----DYALFSGTSMAAP 553
PG+ P DI P V V A + ++G V+ DY ++GTSMA P
Sbjct: 315 PGLQNPFLVDANSDITVPSVSVDRATGLALK-AKLGQSTTVSNQGNQDYEYYNGTSMATP 373
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFA--ENEIG 593
HV+GVA L+ + H + S + +R+A+ TA ++ A +N+ G
Sbjct: 374 HVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDNQTG 415
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 16/114 (14%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G+AP A + KVL +T + + S
Sbjct: 59 QDGSSHGTHVAGTIAALNNSIGV----------LGVAPSASLYAVKVLDSTGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
++ G++ AI++ +D++++SLG P + + A+ +GIVV AAGN+G
Sbjct: 107 IINGIEWAISNNMDVINMSLG---GPTGSTALKTVVDKAVSSGIVVAAAAGNEG 157
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + D++APGV + + + Y ++GT MA P
Sbjct: 187 ASFSSVGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNGTXMATP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H W+ A +R + +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DIVAPGV+V + Y T YA +GT MA PHVAG AAL+K + WS
Sbjct: 191 DIVAPGVNVQS------------TYPGST-YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 572 AAIRSAIMTTA 582
IR+ + TA
Sbjct: 238 VQIRNHLKNTA 248
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 215 SARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
S +D GHGTH + T AA N+ GV G+AP A + KVL + +
Sbjct: 55 STQDGNGHGTHVAGTIAALNNSIGV----------LGVAPSAELYAVKVL--GASGSGSY 102
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
S + G++ A +G M ++ +P + + A SA G++VV A+GN G
Sbjct: 103 SSIAQGLEWAGNNG---MHVASLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSG 155
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + D++APGV + + + Y ++GT MA P
Sbjct: 187 ASFSSAGSEL--------DVMAPGVSIQSTLPGGT-------------YGAYNGTCMATP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H W+ A +R + +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 16/114 (14%)
Query: 217 RDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASD 275
+D HGTH + T AA N+ GV G++P A + KVL +T + + S
Sbjct: 59 QDGSSHGTHVAGTIAALNNSIGV----------LGVSPSASLYAVKVLDSTGSGQ--YSW 106
Query: 276 VLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
++ G++ AI++ +D++++SLG P + + A+ +GIVV AAGN+G
Sbjct: 107 IINGIEWAISNNMDVINMSLG---GPTGSTALKTVVDKAVSSGIVVAAAAGNEG 157
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APG V + N YA +GTSMA+P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H + S + +R+ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APG V + N YA +GTSMA+P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H + S + +R+ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APG V + N YA +GTSMA+P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H + S + +R+ + +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APG V + N YA +GTSMA+P
Sbjct: 187 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 225
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H + S + +R+ + +TA
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APG V + N YA +GTSMA+P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H + S + +R+ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APG V + N YA +GTSMA+P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTSMASP 224
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H + S + +R+ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 87/217 (40%), Gaps = 70/217 (32%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
+W ++ G G IIG+IDTG + P + R +IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGCQVDH--------PDLAER-------------------IIG 65
Query: 193 ARSFSKGLQAAGINVSKEYDFDSAR--DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTAR 249
G+N++ +Y D D GHGTH + T AA GV
Sbjct: 66 -----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVV---------- 104
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----------IMSLSLGFDQ 299
G+AP+A + + K L + E + + +AI VD I+++SLG
Sbjct: 105 GVAPKADLFIIKALSGDGSGE------MGWIAKAIRYAVDWRGPKGEQMRIITMSLG--- 155
Query: 300 TPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
P ++ + A A+ N + VVCAAGN+G R N
Sbjct: 156 GPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTN 192
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL-----KAIH 566
DIVAPGV + + L + YA SGT+MAAPHVAG AL+ A
Sbjct: 226 DIVAPGVGIKSTY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 567 RDWSPAAIRSAIMTTAYPVNF 587
R S I + ++ A P+ F
Sbjct: 273 RSLSETEIYAQLVRRATPIGF 293
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 87/217 (40%), Gaps = 70/217 (32%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
+W ++ G G IIG+IDTG + P + R +IG
Sbjct: 15 VWRASAKGAGQIIGVIDTGCQVDH--------PDLAER-------------------IIG 47
Query: 193 ARSFSKGLQAAGINVSKEYDFDSAR--DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTAR 249
G+N++ +Y D D GHGTH + T AA GV
Sbjct: 48 -----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVV---------- 86
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----------IMSLSLGFDQ 299
G+AP+A + + K L + E + + +AI VD I+++SLG
Sbjct: 87 GVAPKADLFIIKALSGDGSGE------MGWIAKAIRYAVDWRGPKGEQMRIITMSLG--- 137
Query: 300 TPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
P ++ + A A+ N + VVCAAGN+G R N
Sbjct: 138 GPTDSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTN 174
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL-----KAIH 566
DIVAPGV + + L + YA SGT+MAAPHVAG AL+ A
Sbjct: 208 DIVAPGVGIKSTY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 254
Query: 567 RDWSPAAIRSAIMTTAYPVNF 587
R S I + ++ A P+ F
Sbjct: 255 RSLSETEIYAQLVRRATPIGF 275
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL-----KAIH 566
DIVAPGV + + L + YA SGT+MAAPHVAG AL+ A
Sbjct: 226 DIVAPGVGIKSTY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 567 RDWSPAAIRSAIMTTAYPVNF 587
R S I + ++ A P+ F
Sbjct: 273 RSLSETEIYAQLVRRATPIGF 293
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 70/217 (32%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
+W ++ G G IIG+IDTG + P + R +IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGCQVDH--------PDLAER-------------------IIG 65
Query: 193 ARSFSKGLQAAGINVSKEYDFDSAR--DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTAR 249
G+N++ +Y D D GHGTH + T AA GV
Sbjct: 66 -----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVV---------- 104
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----------IMSLSLGFDQ 299
G+AP+A + + K L + E + + +AI VD I+++SLG
Sbjct: 105 GVAPKADLFIIKALSGDGSGE------MGWIAKAIRYAVDWRGPKGEQMRIITMSLG--- 155
Query: 300 TPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
P ++ + A A+ N + VV AAGN+G R N
Sbjct: 156 GPTDSEELHDAVKYAVSNNVSVVXAAGNEGDGREDTN 192
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
YA SGTSMA PHVAGVA LL + R S + IR+AI TA
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTA 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
YA SGTSMA PHVAGVA LL + R S + IR+AI TA
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTA 256
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 18/81 (22%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL-----KAIH 566
DIVAPGV + + L + YA SGT+MAAPHVAG AL+ A
Sbjct: 226 DIVAPGVGIKSTY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 567 RDWSPAAIRSAIMTTAYPVNF 587
R S I + ++ A P+ F
Sbjct: 273 RSLSETEIYAQLVRRATPIGF 293
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 70/217 (32%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
+W ++ G G IIG+IDTG + P + R +IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGXQVDH--------PDLAER-------------------IIG 65
Query: 193 ARSFSKGLQAAGINVSKEYDFDSAR--DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTAR 249
G+N++ +Y D D GHGTH + T AA GV
Sbjct: 66 -----------GVNLTTDYGGDETNFSDNNGHGTHVAGTVAAAETGSGVV---------- 104
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----------IMSLSLGFDQ 299
G+AP+A + + K L + E + + +AI VD I+++SLG
Sbjct: 105 GVAPKADLFIIKALSGDGSGE------MGWIAKAIRYAVDWRGPKGEQMRIITMSLG--- 155
Query: 300 TPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
P ++ + A A+ N + VV AAGN+G R N
Sbjct: 156 GPTDSEELHDAVKYAVSNNVSVVXAAGNEGDGREDTN 192
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS G + +++APG V + N YA +GT MA+P
Sbjct: 186 ASFSSVGAEL--------EVMAPGAGVYSTYPTNT-------------YATLNGTXMASP 224
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG AAL+ + H + S + +R+ + +TA
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 29/143 (20%)
Query: 477 SMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNY 536
S +L+ T P A FS+ G + + APG ++L+ I++G
Sbjct: 219 SCNNVLSVGATTPKGKRAPFSNYG--------ARVHLAAPGTNILST-------IDVGQA 263
Query: 537 ELV-TDYALFSGTSMAAPHVAGVAALL----KAIHRDWSPAAIRSAIMTTAYPVNFAENE 591
V + Y + +GTSMAAPHV+GVAAL+ +I + +P+ + ++ T N +
Sbjct: 264 GPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRLDR 323
Query: 592 IGVVPATPLDFGAGHIDPNKAMD 614
G+G +D N A++
Sbjct: 324 ---------GLGSGIVDANAAVN 337
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 29/143 (20%)
Query: 477 SMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNY 536
S +L+ T P A FS+ G + + APG ++L+ I++G
Sbjct: 219 SCNNVLSVGATTPKGKRAPFSNYG--------ARVHLAAPGTNILST-------IDVGQA 263
Query: 537 ELV-TDYALFSGTSMAAPHVAGVAALL----KAIHRDWSPAAIRSAIMTTAYPVNFAENE 591
V + Y + +GTSMAAPHV+GVAAL+ +I + +P+ + ++ T N +
Sbjct: 264 GPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRLDR 323
Query: 592 IGVVPATPLDFGAGHIDPNKAMD 614
G+G +D N A++
Sbjct: 324 ---------GLGSGIVDANAAVN 337
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVL---DARGSGSYSD 195
Query: 276 VLAGMDQAI--------------------ADGVDIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI AD +++S+SLG Y D+I + A
Sbjct: 196 IAIGIEQAILGPDGVADKDGDGIIAGDPDADAAEVISMSLGGPADDSYLYDMI----IQA 251
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 252 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 327 TPHVSGVVALIQAAY 341
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 212 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 248
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 249 TPHVSGVVALIQAAY 263
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 71 DQNGHGTHVIGTIAALNNDIGV----------VGVAPGVQIYSVRVL---DARGSGSYSD 117
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 118 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 173
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 174 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 257
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 258 TPHVSGVVALIQAAY 272
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGV----------VGVAPGVQIYSVRVL---DARGSGSYSD 126
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 127 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 246
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 247 TPHVSGVVALIQAAY 261
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGV----------VGVAPGVQIYSVRVL---DARGSGSYSD 115
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 116 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 221 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 257
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 258 TPHVSGVVALIQAAY 272
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGV----------VGVAPGVQIYSVRVL---DARGSGSYSD 126
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G+ QAI DG+ +++S+SLG Y D+I + A
Sbjct: 127 IAIGIAQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 182
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 183 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 215
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 327 TPHVSGVVALIQAAY 341
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 39/152 (25%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDV 276
D GHGTH T AA N+ GV G+AP + +VL A + + SD+
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVLDARGS--GSYSDI 196
Query: 277 LAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSAI 315
G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 197 AIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAY 252
Query: 316 ENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 253 NAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 17/81 (20%)
Query: 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH--- 566
K I+APG D+L A PN I + SGTS A P V+GVAALL ++
Sbjct: 198 KQGILAPGKDILGA-KPNGGTIRL------------SGTSFATPIVSGVAALLLSLQIKR 244
Query: 567 -RDWSPAAIRSAIMTTAYPVN 586
P +++A++ +A P N
Sbjct: 245 GEKPDPQKVKNALLASATPCN 265
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 21/134 (15%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMD 281
HGTH +S G H V+ GIAP+ + V +A ++ + + D+ ++
Sbjct: 64 HGTHVASIIFGQHDSPVT----------GIAPQCRGLIVPV-FADESLKLSQLDLSRAIE 112
Query: 282 QAIADGVDIMSLSLGF-----DQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
QA+ +G +I+++S G + + I + EN ++++ A GNDG +H
Sbjct: 113 QAVNNGANIINVSAGQLTDAGEADTWLEKAIQLCQ----ENNVLLIAATGNDGC-ECLHV 167
Query: 337 GAPWITTVGAGTLD 350
A T + G +D
Sbjct: 168 PASLPTVLAVGAMD 181
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 327 TPHVSGVVALIQAAY 341
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVL---DARGSGSYSD 195
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 196 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 251
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 252 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 290 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 326
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 327 TPHVSGVVALIQAAY 341
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVL---DARGSGSYSD 195
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 196 IAIGIEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLGGPADDSYLYDMI----IQA 251
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 252 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT+MA
Sbjct: 287 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTAMA 323
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 324 TPHVSGVVALIQAAY 338
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 146 DQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIYSVRVL---DARGSGSYSD 192
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 193 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 248
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 249 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 281
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 13/75 (17%)
Query: 544 LFSGTSMAAPHVAGVAAL----LKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATP 599
L +GTS AAPHVAG AL LK + ++SP +I+ AI TA + + + P
Sbjct: 457 LXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD---------P 507
Query: 600 LDFGAGHIDPNKAMD 614
G G ++ KA +
Sbjct: 508 FAQGHGLLNVEKAFE 522
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT MA
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTCMA 246
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 247 TPHVSGVVALIQAAY 261
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGV----------VGVAPGVQIYSVRVL---DARGSGSYSD 115
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 116 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 23/75 (30%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
++ASFS+R +P++ APGVD+L+ + Y GT MA
Sbjct: 210 NIASFSNR----------QPEVSAPGVDILSTYPDD-------------SYETLMGTXMA 246
Query: 552 APHVAGVAALLKAIH 566
PHV+GV AL++A +
Sbjct: 247 TPHVSGVVALIQAAY 261
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 41/153 (26%)
Query: 218 DFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SD 275
D GHGTH T AA N+ GV G+AP + +VL D S + SD
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGV----------VGVAPGVQIYSVRVL---DARGSGSYSD 115
Query: 276 VLAGMDQAI----------ADGV----------DIMSLSLGF-DQTPYFNDVIAIASLSA 314
+ G++QAI DG+ +++S+SLG Y D+I + A
Sbjct: 116 IAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQA 171
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
GIV+V A+GN+G P + A P + VGA
Sbjct: 172 YNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 204
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
D+ APG + +A Y T +GTSMA PHVAGVAAL + +P
Sbjct: 196 DLFAPGASIPSAW-----------YTSDTATQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 572 AAIRSAIMTTA 582
A++ SAI+ A
Sbjct: 245 ASVASAILNGA 255
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 28/132 (21%)
Query: 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEES 271
D D GHGT S + N G G+AP MY+V + TE
Sbjct: 167 DVHDVNDRKGHGTMVSGQTSAN------------GKLIGVAPNNKFTMYRVFGSKKTELL 214
Query: 272 AASDVLAGMDQAIADGVDIMSLSLG----FDQTPYFN---------DVIAIASLSAIENG 318
S + QA DG ++++S+G D+ + D + A A +
Sbjct: 215 WVSKAIV---QAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKK 271
Query: 319 IVVVCAAGNDGF 330
+VV AAGNDG
Sbjct: 272 SIVVAAAGNDGI 283
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 28/132 (21%)
Query: 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEES 271
D D GHGT S + N G G+AP MY+V + TE
Sbjct: 191 DVHDVNDRKGHGTMVSGQTSAN------------GKLIGVAPNNKFTMYRVFGSKKTELL 238
Query: 272 AASDVLAGMDQAIADGVDIMSLSLG----FDQTPYFN---------DVIAIASLSAIENG 318
S + QA DG ++++S+G D+ + D + A A +
Sbjct: 239 WVSKAIV---QAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKK 295
Query: 319 IVVVCAAGNDGF 330
+VV AAGNDG
Sbjct: 296 SIVVAAAGNDGI 307
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 33/143 (23%)
Query: 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAAS 274
+ARD GHGTH + T G +G AK V+++ V D+ + S
Sbjct: 63 TARDGHGHGTHCAGTI------GSKTWGVAK----------KVSIFGVKVLDDSGSGSLS 106
Query: 275 DVLAGMDQAIADGVD-------IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGN 327
+++AGMD +D + S+SLG + N A A L + +G+ V AAGN
Sbjct: 107 NIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQ--AAARLQS--SGVFVAVAAGN 162
Query: 328 DGFPRSIHNGA----PWITTVGA 346
D R N + P + TVGA
Sbjct: 163 D--NRDAANTSPASEPTVCTVGA 183
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 545 FSGTSMAAPHVAGVAALL 562
SGTSMA PH+AG+AA L
Sbjct: 221 ISGTSMATPHIAGLAAYL 238
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 16/81 (19%)
Query: 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH--- 566
K I+APG ++L A P E + +GTSMAAP + G++ALL ++
Sbjct: 265 KEGILAPGEEILGAQ----PCTE--------EPVRLTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 567 -RDWSPAAIRSAIMTTAYPVN 586
+ A+R+A++ TA P +
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 545 FSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
SGTSMA+PHVAGVAAL + + SPA + + + T A
Sbjct: 220 ISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 26/155 (16%)
Query: 177 NGTAFSPFVCNRKLIGARSFSKGLQAAGIN-VSKEYDFDSARDFFGHGTHTSSTAAGNHV 235
+G+ + FV + ++ + G ++G + + +YD A D GHGTH + T
Sbjct: 29 DGSGVTAFVIDTGVLNTHNEFGGRASSGYDFIDNDYD---ATDCNGHGTHVAGTIG---- 81
Query: 236 EGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMD--QAIADGVDIMSL 293
G+ G+A +V +VL + + + S V+AG++ + A G + ++
Sbjct: 82 ----------GSTYGVAKNVNVVGVRVLNCSGSGSN--SGVIAGINWVKNNASGPAVANM 129
Query: 294 SLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGND 328
SLG + A +A+ GI V AAGND
Sbjct: 130 SLGGGAS----QATDDAVNAAVAAGITFVVAAGND 160
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 16/81 (19%)
Query: 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH--- 566
K I+APG ++L A P E + +GTSMAAP + G++ALL ++
Sbjct: 265 KEGILAPGEEILGAQ----PCTE--------EPVRLTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 567 -RDWSPAAIRSAIMTTAYPVN 586
+ A+R+A++ TA P +
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 16/81 (19%)
Query: 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH--- 566
K I+APG ++L A P E + +GTSMAAP + G++ALL ++
Sbjct: 247 KEGILAPGEEILGAQ----PCTE--------EPVRLTGTSMAAPVMTGISALLMSLQVQQ 294
Query: 567 -RDWSPAAIRSAIMTTAYPVN 586
+ A+R+A++ TA P +
Sbjct: 295 GKPVDAEAVRTALLKTAIPCD 315
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DI PG D+L+ IG SGTSMA PHVAG+AA L + + +
Sbjct: 200 DIFGPGTDILS--------TWIGGSTRS-----ISGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 572 AAIR 575
+A R
Sbjct: 247 SACR 250
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 31/144 (21%)
Query: 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESA 272
+ S+RD GHGTH + T G +G AK T ++ V D
Sbjct: 60 YYSSRDGNGHGTHCAGTV------GSRTYGVAKKT----------QLFGVKVLDDNGSGQ 103
Query: 273 ASDVLAGMDQAIAD--------GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCA 324
S ++AGMD +D GV + SLSLG + N A A L + +G++V A
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGGYSSSVNS--AAARLQS--SGVMVAVA 158
Query: 325 AGNDGFPRSIHNGA--PWITTVGA 346
AGN+ ++ A P + TVGA
Sbjct: 159 AGNNNADARNYSPASEPSVCTVGA 182
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 31/144 (21%)
Query: 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESA 272
+ S+RD GHGTH + T G +G AK T ++ V D
Sbjct: 60 YYSSRDGNGHGTHCAGTV------GSRTYGVAKKT----------QLFGVKVLDDNGSGQ 103
Query: 273 ASDVLAGMDQAIAD--------GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCA 324
S ++AGMD +D GV + SLSLG + N A A L + +G++V A
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGGYSSSVNS--AAARLQS--SGVMVAVA 158
Query: 325 AGNDGFPRSIHNGA--PWITTVGA 346
AGN+ ++ A P + TVGA
Sbjct: 159 AGNNNADARNYSPASEPSVCTVGA 182
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 545 FSGTSMAAPHVAGVAALLKAIHRDWSPAAIR 575
SGTSMA PHVAG+AA L + + + +A R
Sbjct: 220 ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 17/95 (17%)
Query: 492 HVASFSSRGPDPISPG--ILKPD--IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSG 547
VA FSSRG + I K D I APG V + + + G YA SG
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYS------TWFDGG-------YATISG 247
Query: 548 TSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
TSMA+PH AG+AA + A S +R + T A
Sbjct: 248 TSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 201 QAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMY 260
Q V + +S D GHGTH + +A N G + G+AP A + Y
Sbjct: 50 QCKDFTVGTNFTDNSCTDRQGHGTHVAGSALANGGTGSGVY--------GVAPEADLWAY 101
Query: 261 KVLWATDTEESAASDVLAGM----DQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIE 316
KVL D A D+ + DQA A ++ +++ + + +I A A +
Sbjct: 102 KVL--GDDGSGYADDIAEAIRHAGDQATALNTKVV-INM-SLGSSGESSLITNAVDYAYD 157
Query: 317 NGIVVVCAAGNDG-FPRSI 334
G++++ AAGN G P SI
Sbjct: 158 KGVLIIAAAGNSGPKPGSI 176
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 23/120 (19%)
Query: 210 EYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE 269
+ D DS+ D GHGTH + T G S +G AK ++ +VL + +
Sbjct: 59 DNDADSS-DCNGHGTHVAGTIGG------SQYGVAK--------NVNIVGVRVLSCSGSG 103
Query: 270 ESAASDVLAGMDQAI--ADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGN 327
+ S V++G+D A G + ++SLG Q+ + + AI++G+ + AAGN
Sbjct: 104 TT--SGVISGVDWVAQNASGPSVANMSLGGGQSTALDSAVQ----GAIQSGVSFMLAAGN 157
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEI 592
Y SGTSMA PHVAGVAAL + +P + + + A +EN++
Sbjct: 213 YKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRA-----SENKV 258
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 545 FSGTSMAAPHVAGVAALLKAIHRDWSPAAIR 575
SGTSMA PHVAG+AA L + + + +A R
Sbjct: 220 ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 31/144 (21%)
Query: 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESA 272
+ S+RD GHGTH + T G +G K T ++ V D
Sbjct: 60 YYSSRDGNGHGTHCAGTV------GSRTYGVVKKT----------QLFGVKVLDDNGSGQ 103
Query: 273 ASDVLAGMDQAIAD--------GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCA 324
S ++AGMD +D GV + SLSLG + N A A L + +G++V A
Sbjct: 104 YSTIIAGMDFVASDKNNRNCPKGV-VASLSLGGGYSSSVNS--AAARLQS--SGVMVAVA 158
Query: 325 AGNDGFPRSIHNGA--PWITTVGA 346
AGN+ ++ A P + TVGA
Sbjct: 159 AGNNNADARNYSPASEPSVCTVGA 182
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMD 281
HGTH +S FG + + GIAP+ + +++ D D+ G++
Sbjct: 70 HGTHVASII----------FGQPETSVPGIAPQCR-GLIVPIFSDDRRRITQLDLARGIE 118
Query: 282 QAIADGVDIMSLSLG-----FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
+A+ G I+++S G + + + +++ +N +++V AAGN+G +H
Sbjct: 119 RAVNAGAHIINISGGELTDFGEADGWLENAVSLCR----QNNVLLVAAAGNNGC-DCLHV 173
Query: 337 GAPWITTVGAGTLDRSFH 354
A + G +D H
Sbjct: 174 PAALPAVLAVGAMDDHGH 191
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL--KAIHRDWS 570
I+APG D+L A P G E SGTS A P V+GVAALL + + R +
Sbjct: 207 ILAPGEDILGA-KPG------GGTER------LSGTSFATPIVSGVAALLLSEQVRRGET 253
Query: 571 --PAAIRSAIMTTAYPVN 586
P +R ++ +A P +
Sbjct: 254 PDPQKVRQLLLQSALPCD 271
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMD 281
HGTH +S FG + + GIAP+ + +++ D D+ G++
Sbjct: 61 HGTHVASII----------FGQPETSVPGIAPQCR-GLIVPIFSDDRRRITQLDLARGIE 109
Query: 282 QAIADGVDIMSLSLG-----FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
+A+ G I+++S G + + + +++ +N +++V AAGN+G +H
Sbjct: 110 RAVNAGAHIINISGGELTDFGEADGWLENAVSLCR----QNNVLLVAAAGNNGC-DCLHV 164
Query: 337 GAPWITTVGAGTLDRSFH 354
A + G +D H
Sbjct: 165 PAALPAVLAVGAMDDHGH 182
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL--KAIHRDWS 570
I+APG D+L A P G E SGTS A P V+GVAALL + + R +
Sbjct: 198 ILAPGEDILGA-KPG------GGTER------LSGTSFATPIVSGVAALLLSEQVRRGET 244
Query: 571 --PAAIRSAIMTTAYPVN 586
P +R ++ +A P +
Sbjct: 245 PDPQKVRQLLLQSALPCD 262
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMD 281
HGTH +S FG + + GIAP+ + +++ D D+ G++
Sbjct: 51 HGTHVASII----------FGQPETSVPGIAPQCR-GLIVPIFSDDRRRITQLDLARGIE 99
Query: 282 QAIADGVDIMSLSLG-----FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
+A+ G I+++S G + + + +++ +N +++V AAGN+G +H
Sbjct: 100 RAVNAGAHIINISGGELTDFGEADGWLENAVSLCR----QNNVLLVAAAGNNGC-DCLHV 154
Query: 337 GAPWITTVGAGTLDRSFH 354
A + G +D H
Sbjct: 155 PAALPAVLAVGAMDDHGH 172
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL--KAIHRDWS 570
I+APG D+L A P G E SGT+ A P V+GVAALL + + R +
Sbjct: 188 ILAPGEDILGA-KPG------GGTER------LSGTAFATPIVSGVAALLLSEQVRRGET 234
Query: 571 --PAAIRSAIMTTAYPVN 586
P +R ++ +A P +
Sbjct: 235 PDPQKVRQLLLQSALPCD 252
>pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|B Chain B, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
pdb|1RPX|C Chain C, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum
Chloroplasts
Length = 230
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 377 ITDAPLYYGKNDVNKSICHLGSLNPDEVTGKV----VFCDNSNRIDTYSQMEEVDRAGAY 432
ITD PL DV+ I PD + V C+ S+ I + + ++ GA
Sbjct: 66 ITDLPL-----DVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 433 AAIFLTDTPDIDSDEYYIPS----LILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTK 488
A + L + + EY + + LI+ + G + ++ + K K+ +R I E G
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVK-KISDLRKICAERGLN 179
Query: 489 P 489
P
Sbjct: 180 P 180
>pdb|1BLA|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
Replaced By Ser And Cys 96 Replaced By Ser, Nmr
pdb|1BLD|A Chain A, Basic Fibroblast Growth Factor (Fgf-2) Mutant With Cys 78
Replaced By Ser And Cys 96 Replaced By Ser, Nmr
Length = 155
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 587 FAENEIGVVPATPLDFGAGHIDPNKAMDPGLIY 619
AE EI +PA P D G+G P DP +Y
Sbjct: 1 MAEGEITTLPALPEDGGSGAFPPGHFKDPKRLY 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,702,795
Number of Sequences: 62578
Number of extensions: 1050719
Number of successful extensions: 2478
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2128
Number of HSP's gapped (non-prelim): 235
length of query: 757
length of database: 14,973,337
effective HSP length: 106
effective length of query: 651
effective length of database: 8,340,069
effective search space: 5429384919
effective search space used: 5429384919
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)