Query 047470
Match_columns 757
No_of_seqs 462 out of 3150
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.7E-51 3.7E-56 440.4 30.3 303 114-583 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 7.5E-49 1.6E-53 435.3 22.9 297 123-619 294-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 5.3E-48 1.1E-52 403.7 25.4 269 137-614 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 1.3E-47 2.7E-52 398.1 24.7 242 134-586 1-254 (255)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 9.3E-47 2E-51 411.4 28.8 314 132-614 1-346 (346)
6 cd07478 Peptidases_S8_CspA-lik 100.0 9.6E-47 2.1E-51 419.9 27.9 401 138-605 1-455 (455)
7 cd07497 Peptidases_S8_14 Pepti 100.0 1.5E-46 3.2E-51 398.6 25.9 285 140-582 1-311 (311)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.1E-45 2.3E-50 396.7 27.1 291 132-618 4-302 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 2.3E-45 5.1E-50 382.8 24.9 247 133-587 2-254 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 1E-44 2.2E-49 372.9 22.4 236 143-605 1-239 (239)
11 cd07474 Peptidases_S8_subtilis 100.0 6.9E-44 1.5E-48 380.3 29.1 288 140-612 1-295 (295)
12 cd07483 Peptidases_S8_Subtilis 100.0 5.2E-44 1.1E-48 378.6 25.1 268 141-583 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.9E-43 4.1E-48 369.7 24.9 245 142-583 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 2.6E-43 5.7E-48 369.1 24.6 246 140-583 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 4.6E-44 1E-48 369.7 16.7 328 35-583 79-461 (501)
16 cd04857 Peptidases_S8_Tripepti 100.0 1.7E-42 3.7E-47 373.8 28.0 220 217-585 182-412 (412)
17 cd07485 Peptidases_S8_Fervidol 100.0 1.5E-42 3.3E-47 365.2 24.9 262 132-581 1-273 (273)
18 cd07487 Peptidases_S8_1 Peptid 100.0 5.3E-42 1.2E-46 359.9 26.1 255 140-583 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.6E-41 3.5E-46 354.0 24.8 231 133-584 17-255 (255)
20 cd07494 Peptidases_S8_10 Pepti 100.0 3.2E-41 6.9E-46 357.1 23.4 249 131-587 11-287 (298)
21 cd07490 Peptidases_S8_6 Peptid 100.0 7.9E-41 1.7E-45 348.9 25.6 252 142-583 1-254 (254)
22 cd04847 Peptidases_S8_Subtilis 100.0 2.4E-41 5.2E-46 359.4 20.9 262 143-583 1-291 (291)
23 cd07484 Peptidases_S8_Thermita 100.0 1E-40 2.2E-45 349.2 24.9 239 131-585 19-259 (260)
24 cd07496 Peptidases_S8_13 Pepti 100.0 1.4E-40 3E-45 352.6 24.8 206 215-581 66-285 (285)
25 cd04842 Peptidases_S8_Kp43_pro 100.0 2E-40 4.4E-45 353.3 23.7 276 136-583 2-293 (293)
26 cd07480 Peptidases_S8_12 Pepti 100.0 4E-40 8.8E-45 350.7 23.9 264 135-610 2-296 (297)
27 cd07498 Peptidases_S8_15 Pepti 100.0 7.8E-40 1.7E-44 338.8 22.9 238 143-581 1-242 (242)
28 cd07473 Peptidases_S8_Subtilis 100.0 3.6E-39 7.8E-44 337.4 25.9 248 141-583 2-259 (259)
29 cd04843 Peptidases_S8_11 Pepti 100.0 9.1E-40 2E-44 342.0 21.2 242 132-583 6-277 (277)
30 PF00082 Peptidase_S8: Subtila 100.0 3.3E-40 7.2E-45 349.7 16.5 273 144-614 1-282 (282)
31 cd07477 Peptidases_S8_Subtilis 100.0 6.5E-39 1.4E-43 329.1 24.1 225 142-581 1-229 (229)
32 cd07491 Peptidases_S8_7 Peptid 100.0 2.6E-39 5.6E-44 333.2 20.1 218 140-566 2-230 (247)
33 cd07482 Peptidases_S8_Lantibio 100.0 1.6E-38 3.5E-43 338.9 23.5 147 142-329 1-156 (294)
34 cd07492 Peptidases_S8_8 Peptid 100.0 3.6E-38 7.7E-43 321.9 23.6 221 142-583 1-222 (222)
35 KOG4266 Subtilisin kexin isozy 100.0 1.3E-37 2.8E-42 329.5 23.5 363 34-620 47-471 (1033)
36 cd04059 Peptidases_S8_Protein_ 100.0 4E-38 8.6E-43 336.2 18.7 248 131-583 29-297 (297)
37 cd04848 Peptidases_S8_Autotran 100.0 7.4E-37 1.6E-41 321.2 23.1 241 139-583 1-267 (267)
38 KOG1114 Tripeptidyl peptidase 100.0 3.1E-34 6.7E-39 316.7 22.5 364 220-756 310-688 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 5E-32 1.1E-36 278.1 17.1 193 216-581 33-246 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 6.9E-30 1.5E-34 263.1 24.6 194 216-581 40-241 (241)
41 KOG3526 Subtilisin-like propro 99.9 3E-25 6.6E-30 224.1 10.0 302 131-635 151-475 (629)
42 COG1404 AprE Subtilisin-like s 99.9 8.3E-23 1.8E-27 233.6 22.2 271 131-614 130-420 (508)
43 cd04056 Peptidases_S53 Peptida 99.7 4.9E-17 1.1E-21 177.4 14.3 100 247-352 82-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 1.1E-10 2.3E-15 110.3 12.0 112 378-503 26-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 2.4E-10 5.1E-15 105.7 12.7 114 357-475 2-123 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 2.9E-09 6.4E-14 90.3 6.3 80 38-117 1-82 (82)
47 PF02225 PA: PA domain; Inter 98.7 3.3E-08 7.1E-13 87.4 6.3 88 378-467 6-101 (101)
48 cd04816 PA_SaNapH_like PA_SaNa 98.7 3.3E-07 7.1E-12 84.0 12.7 91 378-471 17-116 (122)
49 cd02129 PA_hSPPL_like PA_hSPPL 98.6 2.2E-07 4.7E-12 83.6 9.5 88 378-470 20-115 (120)
50 KOG3525 Subtilisin-like propro 98.6 3E-07 6.5E-12 101.5 11.4 153 131-329 23-185 (431)
51 cd02122 PA_GRAIL_like PA _GRAI 98.6 4.9E-07 1.1E-11 84.2 10.9 82 388-471 41-132 (138)
52 cd02127 PA_hPAP21_like PA_hPAP 98.5 6.7E-07 1.4E-11 81.0 9.6 84 391-478 21-116 (118)
53 cd02130 PA_ScAPY_like PA_ScAPY 98.5 2.4E-06 5.2E-11 78.3 12.7 87 378-471 22-116 (122)
54 PF06280 DUF1034: Fn3-like dom 98.4 4.1E-06 8.8E-11 75.5 13.3 80 673-753 9-112 (112)
55 cd04818 PA_subtilisin_1 PA_sub 98.4 1.1E-06 2.4E-11 80.0 9.7 79 390-471 26-112 (118)
56 cd02124 PA_PoS1_like PA_PoS1_l 98.4 3.2E-06 7E-11 77.8 12.5 89 380-471 28-123 (129)
57 cd04817 PA_VapT_like PA_VapT_l 98.4 1.3E-06 2.9E-11 80.9 9.5 71 398-470 49-134 (139)
58 cd00538 PA PA: Protease-associ 98.4 1.6E-06 3.4E-11 79.9 9.4 79 391-471 30-120 (126)
59 cd04813 PA_1 PA_1: Protease-as 98.4 1.8E-06 3.9E-11 78.0 8.8 77 390-470 26-112 (117)
60 COG4934 Predicted protease [Po 98.3 4.8E-06 1E-10 99.0 13.9 92 249-346 289-395 (1174)
61 cd02125 PA_VSR PA_VSR: Proteas 98.3 4.6E-06 1E-10 76.6 10.9 79 391-471 22-121 (127)
62 cd02132 PA_GO-like PA_GO-like: 98.3 2.9E-06 6.3E-11 79.4 9.5 85 379-471 39-133 (139)
63 cd02126 PA_EDEM3_like PA_EDEM3 98.3 3E-06 6.5E-11 77.9 9.1 78 391-471 27-120 (126)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.3 3.9E-06 8.4E-11 79.9 9.1 79 391-471 50-141 (153)
65 cd04819 PA_2 PA_2: Protease-as 98.0 7.2E-05 1.6E-09 69.0 11.8 86 378-471 23-121 (127)
66 cd02128 PA_TfR PA_TfR: Proteas 97.0 0.0027 5.9E-08 61.6 8.3 85 378-470 29-156 (183)
67 cd04815 PA_M28_2 PA_M28_2: Pro 96.9 0.0032 6.9E-08 58.6 7.8 71 399-471 33-128 (134)
68 cd04814 PA_M28_1 PA_M28_1: Pro 96.8 0.0032 6.9E-08 58.6 6.6 63 378-442 20-100 (142)
69 cd04820 PA_M28_1_1 PA_M28_1_1: 96.6 0.0051 1.1E-07 57.0 6.8 62 378-441 22-95 (137)
70 cd04822 PA_M28_1_3 PA_M28_1_3: 96.6 0.014 3E-07 55.1 9.5 88 378-466 20-131 (151)
71 PF14874 PapD-like: Flagellar- 96.6 0.066 1.4E-06 47.1 13.2 82 673-757 21-102 (102)
72 KOG2442 Uncharacterized conser 94.9 0.077 1.7E-06 57.8 7.8 69 401-471 91-169 (541)
73 cd02121 PA_GCPII_like PA_GCPII 94.1 0.085 1.8E-06 53.1 5.6 57 378-442 45-106 (220)
74 cd02131 PA_hNAALADL2_like PA_h 93.5 0.11 2.4E-06 48.5 4.8 38 402-441 37-74 (153)
75 PF10633 NPCBM_assoc: NPCBM-as 93.1 0.91 2E-05 37.7 9.3 58 671-728 4-62 (78)
76 KOG4628 Predicted E3 ubiquitin 91.7 0.51 1.1E-05 50.4 7.4 78 391-470 62-150 (348)
77 KOG3920 Uncharacterized conser 91.2 0.26 5.6E-06 45.6 4.0 99 378-483 64-176 (193)
78 cd04821 PA_M28_1_2 PA_M28_1_2: 90.1 1.3 2.8E-05 42.2 7.9 62 378-441 22-102 (157)
79 PF11614 FixG_C: IG-like fold 89.0 11 0.00024 33.9 13.0 55 673-728 32-86 (118)
80 COG1470 Predicted membrane pro 83.3 9.4 0.0002 42.2 10.6 73 671-743 396-470 (513)
81 PF06030 DUF916: Bacterial pro 83.2 15 0.00032 33.4 10.4 79 661-742 17-120 (121)
82 KOG1114 Tripeptidyl peptidase 79.4 1.3 2.8E-05 52.3 2.7 24 137-160 77-100 (1304)
83 PF00345 PapD_N: Pili and flag 74.6 42 0.00092 30.2 10.9 68 673-742 15-90 (122)
84 PF07718 Coatamer_beta_C: Coat 72.9 29 0.00062 32.3 9.0 69 673-742 70-139 (140)
85 COG1470 Predicted membrane pro 67.8 84 0.0018 35.1 12.6 69 673-742 285-360 (513)
86 PF00635 Motile_Sperm: MSP (Ma 61.7 68 0.0015 27.9 9.2 53 673-728 19-71 (109)
87 TIGR02745 ccoG_rdxA_fixG cytoc 58.1 42 0.0009 37.7 8.6 55 673-728 347-401 (434)
88 smart00635 BID_2 Bacterial Ig- 50.9 52 0.0011 27.3 6.1 44 701-748 4-47 (81)
89 PF07610 DUF1573: Protein of u 43.6 77 0.0017 23.1 5.3 43 678-724 2-45 (45)
90 PF00927 Transglut_C: Transglu 43.5 1.9E+02 0.004 25.3 8.9 55 672-728 15-78 (107)
91 PF07705 CARDB: CARDB; InterP 43.2 2E+02 0.0043 24.2 9.2 53 672-727 19-72 (101)
92 PF05753 TRAP_beta: Translocon 42.8 1.5E+02 0.0034 28.9 8.9 69 671-741 37-111 (181)
93 TIGR00845 caca sodium/calcium 33.7 3E+02 0.0065 34.0 11.0 53 675-728 417-476 (928)
94 PF02845 CUE: CUE domain; Int 31.7 51 0.0011 23.6 2.7 24 559-582 5-28 (42)
95 PF08260 Kinin: Insect kinin p 29.3 24 0.00053 15.9 0.4 6 495-500 3-8 (8)
96 PRK14125 cell division suppres 29.3 65 0.0014 28.4 3.5 12 1-12 1-12 (103)
97 PRK15019 CsdA-binding activato 27.1 60 0.0013 30.6 3.0 33 543-576 77-109 (147)
98 PF08821 CGGC: CGGC domain; I 26.3 2.1E+02 0.0046 25.3 6.2 46 249-299 31-77 (107)
99 TIGR03391 FeS_syn_CsdE cystein 25.6 67 0.0014 29.9 3.0 33 543-576 72-104 (138)
100 PF06051 DUF928: Domain of Unk 23.0 7E+02 0.015 24.5 9.9 82 658-742 33-120 (189)
101 PRK13202 ureB urease subunit b 22.9 2E+02 0.0043 25.2 5.1 14 674-687 21-34 (104)
102 PRK13203 ureB urease subunit b 22.9 2E+02 0.0043 25.2 5.1 15 673-687 19-33 (102)
103 PRK09296 cysteine desufuration 22.5 83 0.0018 29.3 3.0 33 543-576 67-99 (138)
104 TIGR02588 conserved hypothetic 22.5 5.9E+02 0.013 23.1 9.0 68 673-755 50-119 (122)
105 PF13940 Ldr_toxin: Toxin Ldr, 22.4 62 0.0013 22.0 1.5 13 550-562 14-26 (35)
106 cd00407 Urease_beta Urease bet 22.2 2.1E+02 0.0046 24.9 5.1 15 673-687 19-33 (101)
107 COG2166 sufE Cysteine desulfur 21.9 80 0.0017 29.5 2.7 33 543-576 72-104 (144)
108 PF04744 Monooxygenase_B: Mono 21.7 9.9E+02 0.021 26.1 11.1 80 671-752 262-372 (381)
109 COG1570 XseA Exonuclease VII, 21.6 2.4E+02 0.0052 31.6 6.8 72 251-329 159-236 (440)
110 PF02657 SufE: Fe-S metabolism 21.2 95 0.0021 28.4 3.1 34 543-577 58-91 (125)
111 PF04255 DUF433: Protein of un 21.0 86 0.0019 24.1 2.4 38 542-579 11-54 (56)
112 PF02601 Exonuc_VII_L: Exonucl 20.8 2.8E+02 0.0062 29.6 7.3 71 252-329 39-118 (319)
113 PF00699 Urease_beta: Urease b 20.2 2.6E+02 0.0057 24.3 5.3 15 673-687 18-32 (100)
114 PLN03080 Probable beta-xylosid 20.1 2.1E+02 0.0044 35.0 6.5 78 673-751 685-778 (779)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-51 Score=440.44 Aligned_cols=303 Identities=56% Similarity=0.871 Sum_probs=257.0
Q ss_pred ccccccCCCCccCCCCCCC--CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceee
Q 047470 114 GKLFTTHSPNFLGLKPNSG--LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLI 191 (757)
Q Consensus 114 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~ 191 (757)
+++++++++.++++..... +|..+++|+||+|||||||||++||+|.+....+.+..|.+.|+.+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678889999999987533 46679999999999999999999999999888999999999999998888888999999
Q ss_pred eeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCC-CC
Q 047470 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDT-EE 270 (757)
Q Consensus 192 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~-~g 270 (757)
+.++|.++++...+ .....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++ . ..
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~---~~~~ 156 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW---PDGG 156 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec---CCCC
Confidence 99999876544322 1223445668899999999999999998766666666667789999999999999998 5 45
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccc
Q 047470 271 SAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTL 349 (757)
Q Consensus 271 ~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~ 349 (757)
+..+++++||++|++++++|||||||......+.+.+..++..+.++|++||+||||+| ...+.++.+||+++||+.+
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~- 235 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST- 235 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-
Confidence 88999999999999999999999999875445667888888899999999999999999 7777888889999998630
Q ss_pred cccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHc
Q 047470 350 DRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRA 429 (757)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~ 429 (757)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCC
Q 047470 430 GAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGIL 509 (757)
Q Consensus 430 Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~l 509 (757)
+
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 510 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
||||+|||++|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 77999999999999875311 111222348999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=7.5e-49 Score=435.34 Aligned_cols=297 Identities=21% Similarity=0.227 Sum_probs=208.9
Q ss_pred CccCCCCC--CCCCC--CCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCcee---eeeee
Q 047470 123 NFLGLKPN--SGLWP--SARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKL---IGARS 195 (757)
Q Consensus 123 ~~~g~~~~--~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv---~g~~~ 195 (757)
..|+++.. +.+|+ .+.+|+||+|||||||||++||||.++-.... ....|. ..++. +++.. +.+++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Gr----dgiDd--D~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGR----KGIDD--DNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCc----ccccc--ccCCccccccccc
Confidence 34555543 34565 35689999999999999999999986421100 000000 00000 01000 11223
Q ss_pred ccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHH
Q 047470 196 FSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAAS 274 (757)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~ 274 (757)
|.+ ....+.|..||||||||||||...++ ..+.||||+|+|+++|+++ ..+ +..+
T Consensus 367 fVd-------------~~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld---~~G~G~~s 422 (639)
T PTZ00262 367 FVN-------------NDGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALD---SHKLGRLG 422 (639)
T ss_pred ccC-------------CCCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEec---CCCCccHH
Confidence 322 11346789999999999999975332 2357999999999999998 555 7889
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc--------------c---
Q 047470 275 DVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH--------------N--- 336 (757)
Q Consensus 275 ~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~--------------~--- 336 (757)
++++||+||++.|++|||||||+.. +...+..++.+|.++|++||+||||++ .....+ .
T Consensus 423 dI~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s 499 (639)
T PTZ00262 423 DMFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILS 499 (639)
T ss_pred HHHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhh
Confidence 9999999999999999999999754 334567777799999999999999998 432111 0
Q ss_pred -CCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCC
Q 047470 337 -GAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSN 415 (757)
Q Consensus 337 -~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 415 (757)
..|++|+|||...+.
T Consensus 500 ~~~~nVIaVGAv~~d~---------------------------------------------------------------- 515 (639)
T PTZ00262 500 KKLRNVITVSNLIKDK---------------------------------------------------------------- 515 (639)
T ss_pred ccCCCEEEEeeccCCC----------------------------------------------------------------
Confidence 123344444321100
Q ss_pred CCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCcccc
Q 047470 416 RIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVAS 495 (757)
Q Consensus 416 ~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 495 (757)
.....++.
T Consensus 516 ------------------------------------------------------------------------~~~~s~s~ 523 (639)
T PTZ00262 516 ------------------------------------------------------------------------NNQYSLSP 523 (639)
T ss_pred ------------------------------------------------------------------------CCcccccc
Confidence 00112345
Q ss_pred ccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHH
Q 047470 496 FSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIR 575 (757)
Q Consensus 496 fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik 575 (757)
||++|.. ++||+|||++|+|+++++ .|..++|||||||||||+||||++++|+|+++||+
T Consensus 524 ~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~ 583 (639)
T PTZ00262 524 NSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVI 583 (639)
T ss_pred cccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 6666632 349999999999998876 89999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCccccCCCCCCCCCC-CccCccccCCCCcee
Q 047470 576 SAIMTTAYPVNFAENEIGVVPATPLDFGA-GHIDPNKAMDPGLIY 619 (757)
Q Consensus 576 ~~L~~TA~~~~~~~~~~~~~~~~~~~~G~-G~vd~~~Al~~~lv~ 619 (757)
++|++||.++... +..+|| |+||+++|++..+-+
T Consensus 584 ~iL~~TA~~l~~~----------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 584 RILKESIVQLPSL----------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHhCccCCCC----------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999877432 223343 899999999976644
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=5.3e-48 Score=403.72 Aligned_cols=269 Identities=27% Similarity=0.320 Sum_probs=202.7
Q ss_pred CCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCC
Q 047470 137 ARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSA 216 (757)
Q Consensus 137 ~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 216 (757)
+++|+||+|+|||||||..||++.+...+ ++.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-----------------------~l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-----------------------DLPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-----------------------CCCcceeeccc-------------cCCC
Confidence 57999999999999999999965432111 11111111100 1235
Q ss_pred CCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 217 RDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 217 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
.|..+|||||||||+ ||||+|+|+.+|+.. ..+++++||+||+++|++|||||||
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-------~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-------GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-------CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 678899999999995 899999999988654 3789999999999999999999999
Q ss_pred CCCCCC-ccCHHHHHHHHHHhC-CcEEEEecCCCC-C-CCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecC
Q 047470 297 FDQTPY-FNDVIAIASLSAIEN-GIVVVCAAGNDG-F-PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFP 372 (757)
Q Consensus 297 ~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~-~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~ 372 (757)
....+. ....+..++.++.++ |++||+||||+| . ....++..|++|+|||...+.......
T Consensus 100 ~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------- 164 (275)
T cd05562 100 YLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------- 164 (275)
T ss_pred ccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------
Confidence 865333 334677777788887 999999999999 3 334467789999999965432210000
Q ss_pred CCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccE
Q 047470 373 ESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPS 452 (757)
Q Consensus 373 ~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~ 452 (757)
|. +.
T Consensus 165 ---------------------~~----------------------------------~~--------------------- 168 (275)
T cd05562 165 ---------------------DP----------------------------------AP--------------------- 168 (275)
T ss_pred ---------------------cc----------------------------------cc---------------------
Confidence 00 00
Q ss_pred EEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCC-CeEecccCCCCcc
Q 047470 453 LILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGV-DVLAAVAPNIPFI 531 (757)
Q Consensus 453 ~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~ 531 (757)
.......+.|+++||+. ++++||||+|||+ ++.+.+.++
T Consensus 169 ----------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~~---- 208 (275)
T cd05562 169 ----------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDGD---- 208 (275)
T ss_pred ----------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcCC----
Confidence 00011345678889987 5789999999975 445554433
Q ss_pred ccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccc
Q 047470 532 EIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611 (757)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~ 611 (757)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+
T Consensus 209 ---------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~--------~g~d~~~G~G~vda~~ 271 (275)
T cd05562 209 ---------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE--------PGYDNASGSGLVDADR 271 (275)
T ss_pred ---------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC--------CCCCCCcCcCcccHHH
Confidence 79999999999999999999999999999999999999999998742 3467799999999999
Q ss_pred cCC
Q 047470 612 AMD 614 (757)
Q Consensus 612 Al~ 614 (757)
|++
T Consensus 272 Av~ 274 (275)
T cd05562 272 AVA 274 (275)
T ss_pred Hhh
Confidence 986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.3e-47 Score=398.13 Aligned_cols=242 Identities=28% Similarity=0.409 Sum_probs=195.1
Q ss_pred CCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCC
Q 047470 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDF 213 (757)
Q Consensus 134 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~ 213 (757)
|+++++|+||+|||||||||.+||+|.+.. ...+|.+ .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 899999999999999999999999997310 0011111 0
Q ss_pred CCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEE
Q 047470 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMS 292 (757)
Q Consensus 214 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn 292 (757)
....|..||||||||||+|+.. .+.||||+|+|+.+|++. +.+ +..++++++++||++++++|||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~---~~~~~~~~~~~~a~~~a~~~~~~Vin 104 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFT---NNQVSYTSWFLDAFNYAILTKIDVLN 104 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeec---CCCCchHHHHHHHHHhhhhcCCCEEE
Confidence 1245778999999999998731 247999999999999998 555 6677899999999999999999
Q ss_pred eCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC--cccCCCceEEeccccccccceeeEEeCCCcEEEEEe
Q 047470 293 LSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS--IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS 369 (757)
Q Consensus 293 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~--~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~ 369 (757)
||||... +....+..++.++.++|++||+||||+| ...+ .+...+++|+|||..
T Consensus 105 ~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~--------------------- 161 (255)
T cd07479 105 LSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID--------------------- 161 (255)
T ss_pred eeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec---------------------
Confidence 9999863 2334566666788899999999999999 4333 345557788887631
Q ss_pred ecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCcc
Q 047470 370 YFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYY 449 (757)
Q Consensus 370 l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~ 449 (757)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCC----CCCCCCCceEEeCCCCeEeccc
Q 047470 450 IPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP----ISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~lKPDI~APG~~I~sa~~ 525 (757)
..+.++.|||+|++. ...+++||||+|||.+|+++..
T Consensus 162 ---------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~ 202 (255)
T cd07479 162 ---------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL 202 (255)
T ss_pred ---------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeecccc
Confidence 123678999999752 1257889999999999998876
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC----CCCHHHHHHHHHhcccccC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSPAAIRSAIMTTAYPVN 586 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~~s~~~ik~~L~~TA~~~~ 586 (757)
.+ .|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 203 ~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 203 KG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred CC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 54 788999999999999999999999999 7899999999999999874
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=9.3e-47 Score=411.38 Aligned_cols=314 Identities=30% Similarity=0.391 Sum_probs=232.4
Q ss_pred CCCCCCC-CCCccEEEEEecCCccCCccccCCCCCCCCc-----cccccccCCCCCCCcccCceeeeeeeccchhhhccC
Q 047470 132 GLWPSAR-YGQGVIIGIIDTGIWPESESFHDKGMPPVPR-----RWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGI 205 (757)
Q Consensus 132 ~~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~ 205 (757)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+.. -...+++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDD--- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCc---
Confidence 3788887 9999999999999999999998754333211 11122211 1122467788888888764221
Q ss_pred CCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh
Q 047470 206 NVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA 285 (757)
Q Consensus 206 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~ 285 (757)
.....+..+|||||||||+|...+.. ....+.||||+|+|+.+|+++...........+++|++++++
T Consensus 75 -------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 75 -------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred -------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 11145788999999999999864321 123468999999999999997311233778889999999999
Q ss_pred CCCcEEEeCCCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc----------------cCCCceEEeccc
Q 047470 286 DGVDIMSLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH----------------NGAPWITTVGAG 347 (757)
Q Consensus 286 ~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~----------------~~ap~~itVgas 347 (757)
.+++|||||||... .......+..++.++.++|++||+||||+| ...... ...+++|+||+.
T Consensus 143 ~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~ 222 (346)
T cd07475 143 LGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASA 222 (346)
T ss_pred cCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeec
Confidence 99999999999976 224556777788889999999999999999 432211 122334444432
Q ss_pred cccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHH
Q 047470 348 TLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVD 427 (757)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~ 427 (757)
..
T Consensus 223 ~~------------------------------------------------------------------------------ 224 (346)
T cd07475 223 NK------------------------------------------------------------------------------ 224 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCC
Q 047470 428 RAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPG 507 (757)
Q Consensus 428 ~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 507 (757)
.......+.++.||+|||+. ++
T Consensus 225 --------------------------------------------------------~~~~~~~~~~~~~S~~G~~~--~~ 246 (346)
T cd07475 225 --------------------------------------------------------KVPNPNGGQMSGFSSWGPTP--DL 246 (346)
T ss_pred --------------------------------------------------------ccCCCCCCccCCCcCCCCCc--cc
Confidence 00012344688999999998 58
Q ss_pred CCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHh----CCCCCHHH----HHHHHH
Q 047470 508 ILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI----HRDWSPAA----IRSAIM 579 (757)
Q Consensus 508 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~s~~~----ik~~L~ 579 (757)
++||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|+
T Consensus 247 ~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~ 313 (346)
T cd07475 247 DLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLM 313 (346)
T ss_pred CcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988765 7899999999999999999999998 78898876 788999
Q ss_pred hcccccCCCCCccccCCCCCCCCCCCccCccccCC
Q 047470 580 TTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 580 ~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 614 (757)
+||.+....... ..++.+..+|+|+||+.+|++
T Consensus 314 ~ta~~~~~~~~~--~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 314 NTATPPLDSEDT--KTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred hcCCcccccCCC--CccCCccccCcchhcHHHhhC
Confidence 999953322111 556678899999999999985
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=9.6e-47 Score=419.87 Aligned_cols=401 Identities=24% Similarity=0.288 Sum_probs=236.1
Q ss_pred CCCCccEEEEEecCCccCCccccC-CCCCCCCccccccccCCCCCCCcccCceeeeeeeccc-hhhhccCCCCCcCCCCC
Q 047470 138 RYGQGVIIGIIDTGIWPESESFHD-KGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSK-GLQAAGINVSKEYDFDS 215 (757)
Q Consensus 138 ~~G~Gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~-~~~~~~~~~~~~~~~~~ 215 (757)
++|+||+|||||||||+.||+|.+ ++.+++...|++....+..-. ...+...+.+ ..+.... -..+.+..+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~-~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALA-SDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHh-cCCccccCc
Confidence 479999999999999999999996 578899999998876543211 1122222221 1111100 011223345
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-----------CCHHHHHHHHHHHH
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-----------SAASDVLAGMDQAI 284 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-----------~~~~~i~~ai~~a~ 284 (757)
..|..||||||||||||+..++ ..+.||||+|+|+++|++. ..+ +..++++.||+|++
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~---~~~~~~~~~~~~~~~~~~~i~~ai~~~~ 142 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQ---AKKYLREFYEDVPFYQETDIMLAIKYLY 142 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeec---CCCcccccccccccCcHHHHHHHHHHHH
Confidence 6789999999999999986432 3357999999999999998 333 57889999999988
Q ss_pred hC-----CCcEEEeCCCCCC-CCCccCHHHHHHHHHHhC-CcEEEEecCCCC-CCCCcccC-CC------ceEEeccccc
Q 047470 285 AD-----GVDIMSLSLGFDQ-TPYFNDVIAIASLSAIEN-GIVVVCAAGNDG-FPRSIHNG-AP------WITTVGAGTL 349 (757)
Q Consensus 285 ~~-----g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~~~~~~~~-ap------~~itVgas~~ 349 (757)
+. .+.|||||||... .....+.++.++..+.++ |++||+||||+| ...+.... .+ --+.|+...
T Consensus 143 ~~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~- 221 (455)
T cd07478 143 DKALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE- 221 (455)
T ss_pred HHHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC-
Confidence 74 4679999999875 344556777777777765 999999999999 44433321 11 012233211
Q ss_pred cccceeeEEeCCCcEEEEEeecC-CCCCC---------ceeeeEEccCCCCcccccC-CCCCCCCccceEEEEeCCCCCc
Q 047470 350 DRSFHATVTLDNGLTFKGISYFP-ESVYI---------TDAPLYYGKNDVNKSICHL-GSLNPDEVTGKVVFCDNSNRID 418 (757)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~~l~~-~~~~~---------~~~p~~~~~~~~~~~~c~~-~~~~~~~~~gkivl~~~g~~~~ 418 (757)
..+.-.+-......+.-.-..| ++... ..+.+.+... ..|.. ...++......|.+...
T Consensus 222 -~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t----~i~v~y~~~~~~~g~~~i~i~~~----- 291 (455)
T cd07478 222 -KGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT----TVYVYYYLPEPYTGDQLIFIRFK----- 291 (455)
T ss_pred -cceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe----EEEEEEcCCCCCCCCeEEEEEcc-----
Confidence 1111000000000000000000 00000 0011111110 00000 00011111111221110
Q ss_pred hhHHHHHHHHcCCeEEEEeccCCC-CCCC-CccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeecc------C-cC
Q 047470 419 TYSQMEEVDRAGAYAAIFLTDTPD-IDSD-EYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELG------T-KP 489 (757)
Q Consensus 419 ~~~k~~~~~~~Ga~~g~i~~~~~~-~~~~-~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~------~-~~ 489 (757)
+ ...+ .+.|...... .... ..++|.-.+...+...+ +. ++..++..+..... . ..
T Consensus 292 ------~--~~~G-iW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~----~~---~~~~tit~Pa~~~~vitVga~~~~ 355 (455)
T cd07478 292 ------N--IKPG-IWKIRLTGVSITDGRFDAWLPSRGLLSENTRFL----EP---DPYTTLTIPGTARSVITVGAYNQN 355 (455)
T ss_pred ------C--CCcc-ceEEEEEeccCCCceEEEEecCcCcCCCCCEee----cC---CCCceEecCCCCCCcEEEEEEeCC
Confidence 0 0111 2222222211 1111 11233222221111111 11 23445555433211 1 22
Q ss_pred CCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhC---
Q 047470 490 APHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH--- 566 (757)
Q Consensus 490 ~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~--- 566 (757)
.+.++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 356 ~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~ 420 (455)
T cd07478 356 NNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVR 420 (455)
T ss_pred CCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhc
Confidence 34699999999998 6999999999999999999866 89999999999999999999999975
Q ss_pred ---CCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 047470 567 ---RDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAG 605 (757)
Q Consensus 567 ---p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G 605 (757)
|.|++++||++|++||+++.. ..+++++||||
T Consensus 421 ~~~p~~~~~~ik~~L~~tA~~~~~-------~~~pn~~~GyG 455 (455)
T cd07478 421 GNDPYLYGEKIKTYLIRGARRRPG-------DEYPNPEWGYG 455 (455)
T ss_pred cCCCCCCHHHHHHHHHHhCccCCC-------CCCCCCCCCCC
Confidence 557999999999999998852 34578899998
No 7
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-46 Score=398.57 Aligned_cols=285 Identities=31% Similarity=0.349 Sum_probs=187.9
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
|+||+|+|||||||.+||+|.++... .|... |+ .+ .++....++.. .....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~------~d--~~-~~~~~g~d~~~------------~~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLK------FD--YK-AYLLPGMDKWG------------GFYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccccc------cC--cC-CCccCCcCCCC------------CccCCCCCc
Confidence 89999999999999999999753210 01000 00 00 01111111111 011236789
Q ss_pred CCCchhHHHhhcccCCCCCccccc-cCCceeeccCCceEEeeeccccCCCCC-CCHHHHHH-------HHHHH--HhCCC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGY-AKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLA-------GMDQA--IADGV 288 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~-------ai~~a--~~~g~ 288 (757)
+||||||||||||+.....+.+++ ....+.||||+|+|+++|++. ..+ .....+.. +++|+ .++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 132 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALW---FGDVIYAWLWTAGFDPVDRKLSWIYTGGPRV 132 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEe---cCCcchhhhhhhccchhhhhhhhhhccCCCc
Confidence 999999999999986433222221 123468999999999999997 333 22222222 34443 46899
Q ss_pred cEEEeCCCCCCCCC-----ccCHHHHHHHH-HHhCCcEEEEecCCCC-CCCC--cccCCCceEEeccccccccceeeEEe
Q 047470 289 DIMSLSLGFDQTPY-----FNDVIAIASLS-AIENGIVVVCAAGNDG-FPRS--IHNGAPWITTVGAGTLDRSFHATVTL 359 (757)
Q Consensus 289 dVIn~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gi~vV~AAGN~g-~~~~--~~~~ap~~itVgas~~~~~~~~~~~~ 359 (757)
+|||||||...... ..+........ +.++|+++|+||||+| ...+ .+..++++|+|||++.....+.+.
T Consensus 133 ~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-- 210 (311)
T cd07497 133 DVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-- 210 (311)
T ss_pred eEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh--
Confidence 99999999864211 11223333322 2389999999999999 5443 455678999999974321100000
Q ss_pred CCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEecc
Q 047470 360 DNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTD 439 (757)
Q Consensus 360 ~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~ 439 (757)
.+.
T Consensus 211 ---------------------------------------------------------------------~~~-------- 213 (311)
T cd07497 211 ---------------------------------------------------------------------FGY-------- 213 (311)
T ss_pred ---------------------------------------------------------------------hcc--------
Confidence 000
Q ss_pred CCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCC
Q 047470 440 TPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVD 519 (757)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~ 519 (757)
.....+.++.||||||+. ++++||||+|||++
T Consensus 214 ----------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~ 245 (311)
T cd07497 214 ----------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAF 245 (311)
T ss_pred ----------------------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcc
Confidence 001234689999999998 69999999999999
Q ss_pred eEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 047470 520 VLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR------DWSPAAIRSAIMTTA 582 (757)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~~s~~~ik~~L~~TA 582 (757)
|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 246 i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 246 AWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999876542100 011123799999999999999999999999986 589999999999997
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-45 Score=396.72 Aligned_cols=291 Identities=31% Similarity=0.409 Sum_probs=225.9
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccch-hhhccCCCCCc
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG-LQAAGINVSKE 210 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~-~~~~~~~~~~~ 210 (757)
.+|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|..+ +... ...
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~~----~~~ 58 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDGT----NPP 58 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccccc----cCC
Confidence 4899999999999999999999999999863111 1123333333311 1100 111
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
.+...+.|..+|||||||||+|+..+ ..+.||||+|+|+.+|+++ ..+ .....+++++++|++++++
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~---~~~~~~~~~~~~ai~~a~~~~~~ 126 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFG---CSGSTTEDTIIAAFLRAYEDGAD 126 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeec---CCCCCCHHHHHHHHHHHHhcCCC
Confidence 23345667799999999999998543 2358999999999999998 555 6777889999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
|||||||... .+..+.+...+.++.++|+++|+||||+| ... ..+...|++|+||+.
T Consensus 127 iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~------------------ 187 (312)
T cd07489 127 VITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASV------------------ 187 (312)
T ss_pred EEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEe------------------
Confidence 9999999875 33446777777888999999999999999 322 223455677777752
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 188 -------------------------------------------------------------------------------- 187 (312)
T cd07489 188 -------------------------------------------------------------------------------- 187 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
-+.||++||+. +...||||+|||++++++++
T Consensus 188 -----------------------------------------------~~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~ 218 (312)
T cd07489 188 -----------------------------------------------DSYFSSWGPTN--ELYLKPDVAAPGGNILSTYP 218 (312)
T ss_pred -----------------------------------------------cCCccCCCCCC--CCCcCccEEcCCCCEEEeee
Confidence 05689999998 58899999999999999887
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhC-CCCCHHHHHHHHHhcccccCCCCCccc-cCCCCCCCCC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH-RDWSPAAIRSAIMTTAYPVNFAENEIG-VVPATPLDFG 603 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~~s~~~ik~~L~~TA~~~~~~~~~~~-~~~~~~~~~G 603 (757)
.... .|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+.... ....+...+|
T Consensus 219 ~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G 287 (312)
T cd07489 219 LAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQG 287 (312)
T ss_pred CCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcC
Confidence 7522 58999999999999999999999999 999999999999999998864432111 1135667999
Q ss_pred CCccCccccCCCCce
Q 047470 604 AGHIDPNKAMDPGLI 618 (757)
Q Consensus 604 ~G~vd~~~Al~~~lv 618 (757)
||+||+.+|++..-.
T Consensus 288 ~G~vn~~~a~~~~~~ 302 (312)
T cd07489 288 AGLVNAYKALYATTT 302 (312)
T ss_pred cceeeHHHHhcCCcc
Confidence 999999999996443
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2.3e-45 Score=382.82 Aligned_cols=247 Identities=27% Similarity=0.344 Sum_probs=200.7
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
+|+.+++|+||+|||||+|||.+||+|.+....+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 79999999999999999999999999986421110 00000 0
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMS 292 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn 292 (757)
.....|..+|||||||||+|+.. ..+.||||+|+|+.+|++... ..+.+..++++||+||+++|++|||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAED-RRGCSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCC-CCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 12245678999999999998742 124799999999999998721 1224578899999999999999999
Q ss_pred eCCCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEee
Q 047470 293 LSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISY 370 (757)
Q Consensus 293 ~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l 370 (757)
||||... .......+..++..+.++|++||+||||+| ....++...|++|+||+...
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 9999765 333456778888889999999999999999 76677778899999997411
Q ss_pred cCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccc
Q 047470 371 FPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYI 450 (757)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~ 450 (757)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCc
Q 047470 451 PSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPF 530 (757)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 530 (757)
.+.++.||++|+.. .||||+|||.+|+++.+.+
T Consensus 171 ---------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~--- 203 (267)
T cd07476 171 ---------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG--- 203 (267)
T ss_pred ---------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC---
Confidence 12457899999864 3789999999999998775
Q ss_pred cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCC----CCHHHHHHHHHhcccccCC
Q 047470 531 IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRD----WSPAAIRSAIMTTAYPVNF 587 (757)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~----~s~~~ik~~L~~TA~~~~~ 587 (757)
.|..++|||||||||||++|||++++|. ++|++||++|++||+++..
T Consensus 204 ----------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 ----------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ----------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 8999999999999999864
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-44 Score=372.94 Aligned_cols=236 Identities=31% Similarity=0.388 Sum_probs=190.7
Q ss_pred cEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 143 VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 143 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
|+|||||||||.+||+|.+... ..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------------~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------------ARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------------ccccCCC---------------CCCCCCCCC
Confidence 7899999999999999975311 1111100 124567899
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCC-CCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDT-EESAASDVLAGMDQAIADGVDIMSLSLGFDQTP 301 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~-~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 301 (757)
||||||||+|+.... .|+||+|+|+.+|++..... ..++..++++||+||+++|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999874321 59999999999999983211 1267788999999999999999999999753
Q ss_pred CccCHHHHHHHHHHhCCcEEEEecCCCC-C-CCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCce
Q 047470 302 YFNDVIAIASLSAIENGIVVVCAAGNDG-F-PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITD 379 (757)
Q Consensus 302 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~-~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 379 (757)
...++.++.++.++|++||+||||+| . ...+++..|++|+||+...
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34566777789999999999999999 4 3456666788888886311
Q ss_pred eeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhh
Q 047470 380 APLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSA 459 (757)
Q Consensus 380 ~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~ 459 (757)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccc
Q 047470 460 GTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELV 539 (757)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 539 (757)
.+.++.||++|+.. ||+|||++|+++.+.+
T Consensus 154 ------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~------------ 183 (239)
T cd05561 154 ------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG------------ 183 (239)
T ss_pred ------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC------------
Confidence 22567899999987 9999999999987665
Q ss_pred cceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 047470 540 TDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAG 605 (757)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G 605 (757)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 -~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g--------~~~~d~~~G~G 239 (239)
T cd05561 184 -GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG--------PPGRDPVFGYG 239 (239)
T ss_pred -CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC--------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999884 34577899998
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.9e-44 Score=380.34 Aligned_cols=288 Identities=42% Similarity=0.575 Sum_probs=215.5
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccC-CC-CCcCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGI-NV-SKEYDFDSAR 217 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~-~~-~~~~~~~~~~ 217 (757)
|+||+|||||+|||++||+|.+.. ..+.++...++|......... .. ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998531 123445555555432110000 00 0000112245
Q ss_pred CCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 218 DFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 218 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
|..+|||||||+|+|...+ ...+.|+||+|+|+.+|+++ ..+ +...++++||+|+++++++|||||||
T Consensus 60 ~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~---~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g 128 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLG---PGGSGTTDVIIAAIEQAVDDGMDVINLSLG 128 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeec---CCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 6899999999999988543 22357999999999999997 444 78889999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCc--ccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCC
Q 047470 297 FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSI--HNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPE 373 (757)
Q Consensus 297 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~--~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~ 373 (757)
... ....+.+..++..+.++|+++|+||||+| ..... +...+++|+||++.....
T Consensus 129 ~~~-~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------------- 186 (295)
T cd07474 129 SSV-NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------------- 186 (295)
T ss_pred CCC-CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------------
Confidence 865 22456777788899999999999999999 44433 456789999998531000
Q ss_pred CCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEE
Q 047470 374 SVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSL 453 (757)
Q Consensus 374 ~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~ 453 (757)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCC-CCCCCCCCCCCceEEeCCCCeEecccCCCCccc
Q 047470 454 ILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSR-GPDPISPGILKPDIVAPGVDVLAAVAPNIPFIE 532 (757)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 532 (757)
........|+++ |++. ...+||||+|||++|++++....
T Consensus 187 ----------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~---- 226 (295)
T cd07474 187 ----------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG---- 226 (295)
T ss_pred ----------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC----
Confidence 001123444554 4544 58899999999999999987631
Q ss_pred cCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCcccc
Q 047470 533 IGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612 (757)
Q Consensus 533 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 612 (757)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|+||+.+|
T Consensus 227 -------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~----~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 -------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG----VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC----CcCChhccCcceeccccC
Confidence 178999999999999999999999999999999999999999999876542 223457999999999987
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.2e-44 Score=378.60 Aligned_cols=268 Identities=25% Similarity=0.354 Sum_probs=186.4
Q ss_pred CccEEEEEecCCccCCccccCCCCC-CCCccccccccCCCCCCCcccCceeeeeeeccchhhhc----cCC--CC----C
Q 047470 141 QGVIIGIIDTGIWPESESFHDKGMP-PVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAA----GIN--VS----K 209 (757)
Q Consensus 141 ~Gv~VgVIDtGid~~Hp~f~~~~~~-~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~----~~~--~~----~ 209 (757)
|+|+|||||||||++||+|.+.... +.....++....+.+|.. + +++++|...+... ..+ .. .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 6899999999999999999864211 000111122222222221 1 2334443211100 000 00 0
Q ss_pred cCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCc
Q 047470 210 EYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 210 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~d 289 (757)
+.+...+.+..+|||||||||+|...++. .+.||||+|+|+.+|++. .......++++||+||+++|++
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~---~g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVP---NGDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEec---CCCcCHHHHHHHHHHHHHCCCc
Confidence 11223355789999999999999754322 247999999999999986 4456778999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCc---cc--------CCCceEEeccccccccceeeE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSI---HN--------GAPWITTVGAGTLDRSFHATV 357 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~---~~--------~ap~~itVgas~~~~~~~~~~ 357 (757)
|||||||..... ..+.+..++..+.++|+++|+||||+| ..... +. ..+++|+||+....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975422 234566677788999999999999999 43211 11 11334444432110
Q ss_pred EeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEe
Q 047470 358 TLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFL 437 (757)
Q Consensus 358 ~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~ 437 (757)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCC
Q 047470 438 TDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPG 517 (757)
Q Consensus 438 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 517 (757)
.....++.||++|+. +|||.|||
T Consensus 216 --------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG 238 (291)
T cd07483 216 --------------------------------------------------YENNLVANFSNYGKK-------NVDVFAPG 238 (291)
T ss_pred --------------------------------------------------CCcccccccCCCCCC-------ceEEEeCC
Confidence 011247889999984 34999999
Q ss_pred CCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 518 VDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 518 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 239 ~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 239 ERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999998765 7999999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-43 Score=369.66 Aligned_cols=245 Identities=31% Similarity=0.400 Sum_probs=194.1
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+||||||||+++||+|.... ..++.++.+.++|.+... ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC------------CCCCCCCC
Confidence 7999999999999999995211 013456777777754210 11357889
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTP 301 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 301 (757)
|||||||+|+|+.. +.+.||||+|+|+.+|+............+++.|++||.+.+++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999998742 23589999999999998763212224566789999999999999999999987521
Q ss_pred Cc------------cCHHHHHHHHHHhCCcEEEEecCCCC-C---CCCcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 302 YF------------NDVIAIASLSAIENGIVVVCAAGNDG-F---PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 302 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g-~---~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
.. ...+..++..+.++|++||+||||+| . ....+...|++|+||+...
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 182 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------- 182 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------
Confidence 11 23566777788999999999999999 5 3445666788888887311
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
.+.++.||++||+. ++++||||+|||.++++...
T Consensus 183 --------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~ 216 (261)
T cd07493 183 --------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYVING 216 (261)
T ss_pred --------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcC
Confidence 12568899999987 68999999999999998554
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.+ .|..++|||||||+|||++|||++++|+|++.|||++|++||+
T Consensus 217 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 217 DG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 43 7899999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=2.6e-43 Score=369.11 Aligned_cols=246 Identities=34% Similarity=0.386 Sum_probs=192.3
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
|+||+|||||+|||++||+|.+. |++.... .+...+.+.+. ......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~----------~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP----------VGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC----------CCCCCCCCCC
Confidence 89999999999999999999864 1110000 00000111110 1112345678
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh------------CC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA------------DG 287 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~------------~g 287 (757)
.+|||||||||+|..... ...||||+|+|+.+|+++ ..++...+++++++++++ .+
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALD---RNGGNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeec---CCCCcHHHHHHHHHHHHhcccccccccccccC
Confidence 899999999999874321 126999999999999998 666888899999999875 78
Q ss_pred CcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC---cccCCCceEEeccccccccceeeEEeCCCc
Q 047470 288 VDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS---IHNGAPWITTVGAGTLDRSFHATVTLDNGL 363 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~---~~~~ap~~itVgas~~~~~~~~~~~~~~~~ 363 (757)
++|||||||.... ....+..++..+.++|++||+||||++ .... .+...|++|+||+...
T Consensus 120 ~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-------------- 183 (264)
T cd07481 120 PDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-------------- 183 (264)
T ss_pred CeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC--------------
Confidence 9999999998752 245556666688899999999999999 4332 4556678888886311
Q ss_pred EEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCC
Q 047470 364 TFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDI 443 (757)
Q Consensus 364 ~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~ 443 (757)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEec
Q 047470 444 DSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAA 523 (757)
Q Consensus 444 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 523 (757)
.+.++.||++||.. .+++||||+|||.+|+++
T Consensus 184 ----------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~ 215 (264)
T cd07481 184 ----------------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNIRSA 215 (264)
T ss_pred ----------------------------------------------CCCCccccCCCCCC--CCCcCceEEECCCCeEEe
Confidence 23578999999998 489999999999999999
Q ss_pred ccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 047470 524 VAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRD--WSPAAIRSAIMTTAY 583 (757)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--~s~~~ik~~L~~TA~ 583 (757)
.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 216 ~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 216 VPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 8875 7899999999999999999999999999 999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-44 Score=369.69 Aligned_cols=328 Identities=27% Similarity=0.381 Sum_probs=255.3
Q ss_pred CCceEEEEeCCCCCCCccccHHHHHHHhhcccCCC---CC------------CCCcEEEEe--c-ceeeEEEEEcCHHHH
Q 047470 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYP---AD------------RNNMLLYSY--N-HVIQGFSARLTPSQL 96 (757)
Q Consensus 35 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~---~~------------~~~~~~~~~--~-~~~~g~s~~l~~~~~ 96 (757)
.+++|||.|++....+....+.+|+++........ .+ .-..+.+.| . .+|+|..-..+.+-+
T Consensus 79 ~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 79 LPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 57899999997776666777778877765433221 00 000133333 3 378888888899999
Q ss_pred HHHHcCCCeEEEEecccccccc-----cCCCCccCCCCC---C----CCC----CCCCCCCccEEEEEecCCccCCcccc
Q 047470 97 SEIEKSPAHLATYPESFGKLFT-----THSPNFLGLKPN---S----GLW----PSARYGQGVIIGIIDTGIWPESESFH 160 (757)
Q Consensus 97 ~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~---~----~~~----~~~~~G~Gv~VgVIDtGid~~Hp~f~ 160 (757)
..++++|.++.++++..++... .+....||+-.. . ..| ..-..|+||...|+||||+.+||+|.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 9999999999999998887644 344455665443 1 111 12348999999999999999999999
Q ss_pred CCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCcc
Q 047470 161 DKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSH 240 (757)
Q Consensus 161 ~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~ 240 (757)
++ +.| |.| +.+ -....|++||||||||+|+++.
T Consensus 239 gR------a~w-Ga~-----i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt------ 271 (501)
T KOG1153|consen 239 GR------AIW-GAT-----IPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT------ 271 (501)
T ss_pred cc------eec-ccc-----cCC-----------------------------CCcccccCCCcceeeeeeeccc------
Confidence 75 233 111 110 1225689999999999999984
Q ss_pred ccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC---------CCcEEEeCCCCCCCCCccCHHHHH
Q 047470 241 FGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD---------GVDIMSLSLGFDQTPYFNDVIAIA 310 (757)
Q Consensus 241 ~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~a 310 (757)
.|||.+++|+++||++ +.| +..+++++++|++++. +..|.|||+|+..+ -+++.|
T Consensus 272 --------~GvAK~s~lvaVKVl~---~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~A 336 (501)
T KOG1153|consen 272 --------FGVAKNSNLVAVKVLR---SDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMA 336 (501)
T ss_pred --------cccccccceEEEEEec---cCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHH
Confidence 5999999999999999 888 8999999999999986 46899999999753 467777
Q ss_pred HHHHHhCCcEEEEecCCCC--CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCC
Q 047470 311 SLSAIENGIVVVCAAGNDG--FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKND 388 (757)
Q Consensus 311 ~~~a~~~Gi~vV~AAGN~g--~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~ 388 (757)
+.+|.+.|+++++||||+. ...+.++.+..+|||||++.
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------- 377 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------- 377 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------------------
Confidence 7799999999999999999 45566777889999998643
Q ss_pred CCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHh
Q 047470 389 VNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVT 468 (757)
Q Consensus 389 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 468 (757)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccc
Q 047470 469 GKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGT 548 (757)
Q Consensus 469 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 548 (757)
.+.+|.|||||+++ ||.|||.+|+|+|.+... ...+.|||
T Consensus 378 ---------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilSGT 417 (501)
T KOG1153|consen 378 ---------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILSGT 417 (501)
T ss_pred ---------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheeecc
Confidence 23689999999999 999999999999998743 66799999
Q ss_pred cchhhhHhHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 047470 549 SMAAPHVAGVAALLKAIHRD---------WSPAAIRSAIMTTAY 583 (757)
Q Consensus 549 SmAaP~VAG~aALl~~~~p~---------~s~~~ik~~L~~TA~ 583 (757)
|||+|||||++|.+++.+|. .+|.++|..+..-..
T Consensus 418 SMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 418 SMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99999999999999999883 378888887776554
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.7e-42 Score=373.83 Aligned_cols=220 Identities=27% Similarity=0.336 Sum_probs=163.2
Q ss_pred CCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC--CCHHHHHHHHHHHHhCCCcEEEeC
Q 047470 217 RDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE--SAASDVLAGMDQAIADGVDIMSLS 294 (757)
Q Consensus 217 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S 294 (757)
.|+.+|||||||||||+..+ ...+.||||+|+|+++|+++. ..+ +...++++||++|++.|++|||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~--~~gs~~t~~~l~~ai~~ai~~gadVIN~S 251 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDT--RLGSMETGTALVRAMIAAIETKCDLINMS 251 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccC--CCCCccchHHHHHHHHHHHHcCCCEEEec
Confidence 46789999999999998432 223579999999999999872 122 334679999999999999999999
Q ss_pred CCCCCCCCccCHHHHHHH-HHHhCCcEEEEecCCCC-CCCCccc---CCCceEEeccccccccceeeEEeCCCcEEEEEe
Q 047470 295 LGFDQTPYFNDVIAIASL-SAIENGIVVVCAAGNDG-FPRSIHN---GAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS 369 (757)
Q Consensus 295 lG~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g-~~~~~~~---~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~ 369 (757)
||..........+..++. .+.++|+++|+||||+| ...++.. .++++|+|||..........
T Consensus 252 lG~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 252 YGEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred CCcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 998752111122333333 34579999999999999 6555443 35789999985221100000
Q ss_pred ecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCcc
Q 047470 370 YFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYY 449 (757)
Q Consensus 370 l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~ 449 (757)
| +
T Consensus 319 --------------y---------------------------------------------~------------------- 320 (412)
T cd04857 319 --------------Y---------------------------------------------S------------------- 320 (412)
T ss_pred --------------c---------------------------------------------c-------------------
Confidence 0 0
Q ss_pred ccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCC
Q 047470 450 IPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIP 529 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 529 (757)
......+.++.||||||+. ++++||||+|||+.|.+.-...
T Consensus 321 -----------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-- 361 (412)
T cd04857 321 -----------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-- 361 (412)
T ss_pred -----------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC--
Confidence 0001134689999999998 7999999999999998752111
Q ss_pred ccccCCCccccceEeeccccchhhhHhHHHHHHHH----hCCCCCHHHHHHHHHhccccc
Q 047470 530 FIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPV 585 (757)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~s~~~ik~~L~~TA~~~ 585 (757)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ---------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ---------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ---------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 12789999999999999999999975 478999999999999999864
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=1.5e-42 Score=365.17 Aligned_cols=262 Identities=29% Similarity=0.341 Sum_probs=197.7
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcC
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEY 211 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~ 211 (757)
.+|..+++|+||+|+|||||||++||+|.+..... .+. .+...+.... ....
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~~------------~~~~~~~~~~---~~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GYD------------PAVNGYNFVP---NVGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Ccc------------cccCCccccc---ccCC
Confidence 37999999999999999999999999999641100 000 0000000000 0001
Q ss_pred CCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcE
Q 047470 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 212 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dV 290 (757)
......|..||||||||||+|+..+.....|.+ .+.|+||+|+|+.+|++. ..+ ....+++++|++|++.|++|
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~---~~~~~~~~~~~~ai~~a~~~g~~V 127 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFA---GRYYVGDDAVAAAIVYAADNGAVI 127 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEEC---CCCCccHHHHHHHHHHHHHcCCcE
Confidence 123356778999999999999754332222221 345799999999999998 444 77888999999999999999
Q ss_pred EEeCCCCCCCCCccCHHHHHHHHHHhC-------CcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCC
Q 047470 291 MSLSLGFDQTPYFNDVIAIASLSAIEN-------GIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNG 362 (757)
Q Consensus 291 In~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~ 362 (757)
||||||......+...+..++..+.++ |++||+||||++ .....++..|++|+||+.+.
T Consensus 128 in~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------------- 194 (273)
T cd07485 128 LQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------------- 194 (273)
T ss_pred EEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-------------
Confidence 999999875333455666677788877 999999999999 65555777788999987421
Q ss_pred cEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 363 LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 363 ~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCC-CeE
Q 047470 443 IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGV-DVL 521 (757)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~ 521 (757)
.+.++.||++|+.. ||+|||+ .|+
T Consensus 195 -----------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~ 219 (273)
T cd07485 195 -----------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTIL 219 (273)
T ss_pred -----------------------------------------------CCCcCccccCCCce--------EEEeCCCCccc
Confidence 12567899999987 9999999 888
Q ss_pred ecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 047470 522 AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRD-WSPAAIRSAIMTT 581 (757)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-~s~~~ik~~L~~T 581 (757)
++.+.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 220 ~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 220 STVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 88765411 11237899999999999999999999999999 9999999999986
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-42 Score=359.87 Aligned_cols=255 Identities=33% Similarity=0.491 Sum_probs=200.9
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
|+||+|+|||+||+++||+|.+.... .+.+... ........|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~----------~~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT----------VNGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc----------ccCCCCCCCC
Confidence 89999999999999999999864211 0011000 0112345677
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC----CCcEEEeC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD----GVDIMSLS 294 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~S 294 (757)
.+|||||||+|+|+..+. ...+.|+||+|+|+.+|+++ ..+ ...+++++||+|+++. +++|||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~---~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S 113 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLD---DSGSGSESDIIAGIDWVVENNEKYNIRVVNLS 113 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeec---CCCCccHHHHHHHHHHHHhhccccCceEEEec
Confidence 899999999999985432 22358999999999999998 555 6788999999999998 99999999
Q ss_pred CCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCC--CcccCCCceEEeccccccccceeeEEeCCCcEEEEEee
Q 047470 295 LGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPR--SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISY 370 (757)
Q Consensus 295 lG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~--~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l 370 (757)
||... .....+.+..++.++.++|++||+||||++ ... ..+...+++|+||+...+..
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 175 (264)
T cd07487 114 LGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------ 175 (264)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------
Confidence 99876 244667888888899999999999999999 554 55666789999998533211
Q ss_pred cCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccc
Q 047470 371 FPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYI 450 (757)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~ 450 (757)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCc
Q 047470 451 PSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPF 530 (757)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 530 (757)
....++.||++||+. ++++||||+|||++|++..+.....
T Consensus 176 --------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~ 215 (264)
T cd07487 176 --------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP 215 (264)
T ss_pred --------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc
Confidence 002468899999998 6899999999999999986543111
Q ss_pred cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 531 IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 216 ----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 216 ----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 1122237899999999999999999999999999999999999999985
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.6e-41 Score=354.03 Aligned_cols=231 Identities=37% Similarity=0.494 Sum_probs=191.6
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
+|..+++|+||+|+|||+||+++||+|.++ +...+.|.+.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 677789999999999999999999999753 1222222211
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC-----
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD----- 286 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~----- 286 (757)
....|..+|||||||||+++. .||||+|+|+.+|+++ ..+ ...+++++++++++++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~---~~~~~~~~~~~~ai~~~~~~~~~~~ 118 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLD---CNGSGTLSGIIAGLEWVANDATKRG 118 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeC---CCCCcCHHHHHHHHHHHHhcccccC
Confidence 115678899999999999863 5999999999999998 554 6788999999999987
Q ss_pred CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCCcE
Q 047470 287 GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLT 364 (757)
Q Consensus 287 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~ 364 (757)
+++|||||||... ...+..++..+.++|+++|+||||+| .. ...+...|++|+||+...
T Consensus 119 ~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~--------------- 179 (255)
T cd04077 119 KPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS--------------- 179 (255)
T ss_pred CCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC---------------
Confidence 4899999999864 45566677788999999999999999 43 455667789999987422
Q ss_pred EEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCC
Q 047470 365 FKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDID 444 (757)
Q Consensus 365 ~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~ 444 (757)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecc
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAV 524 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 524 (757)
.+.++.||++||.. ||+|||.+|.++.
T Consensus 180 ---------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~ 206 (255)
T cd04077 180 ---------------------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAW 206 (255)
T ss_pred ---------------------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecc
Confidence 12468899999987 9999999999987
Q ss_pred cCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 047470 525 APNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYP 584 (757)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~ 584 (757)
.... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 207 ~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 207 IGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 7421 278999999999999999999999999999999999999999974
No 20
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-41 Score=357.06 Aligned_cols=249 Identities=31% Similarity=0.374 Sum_probs=182.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|+++++|+||+|+||||||+..|| |...++. + +. .+..
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~------------ 51 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAP------------ 51 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCC------------
Confidence 359999999999999999999999998 6543110 0 00 0000
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcE
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dV 290 (757)
.......|+.||||||||++. ||||+|+|+.+|+++ . ..+++++||+||++++++|
T Consensus 52 ~~~~~~~D~~gHGT~vag~i~------------------GvAP~a~i~~vkv~~---~---~~~~~~~ai~~a~~~g~dV 107 (298)
T cd07494 52 GATDPACDENGHGTGESANLF------------------AIAPGAQFIGVKLGG---P---DLVNSVGAFKKAISLSPDI 107 (298)
T ss_pred CCCCCCCCCCCcchheeecee------------------EeCCCCeEEEEEccC---C---CcHHHHHHHHHHHhcCCCE
Confidence 011235678899999998753 999999999999987 3 5677999999999999999
Q ss_pred EEeCCCCCCC-C---------CccCHHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCceEEeccccccccceeeEEeC
Q 047470 291 MSLSLGFDQT-P---------YFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVTLD 360 (757)
Q Consensus 291 In~SlG~~~~-~---------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~ap~~itVgas~~~~~~~~~~~~~ 360 (757)
||||||.... + .....+..++..|.++|++||+||||++ ..+++..|++|+||++..+..-
T Consensus 108 In~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~--~~~Pa~~p~viaVga~~~~~~g------- 178 (298)
T cd07494 108 ISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGG--WSFPAQHPEVIAAGGVFVDEDG------- 178 (298)
T ss_pred EEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCC--CCcCCCCCCEEEEEeEeccCCC-------
Confidence 9999998641 1 1234577788888999999999999998 2357888999999986432110
Q ss_pred CCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccC
Q 047470 361 NGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 361 ~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
.
T Consensus 179 ----------------------------------------------------------------------~--------- 179 (298)
T cd07494 179 ----------------------------------------------------------------------A--------- 179 (298)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred CCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCcccccc--CCCCCCCCCCCCCceE-----
Q 047470 441 PDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFS--SRGPDPISPGILKPDI----- 513 (757)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--s~Gp~~~~~~~lKPDI----- 513 (757)
....++ ++.... .+++.|||+
T Consensus 180 ---------------------------------------------------~~~~~~~~~~~s~~-~~g~~~pd~~~~~g 207 (298)
T cd07494 180 ---------------------------------------------------RRASSYASGFRSKI-YPGRQVPDVCGLVG 207 (298)
T ss_pred ---------------------------------------------------ccccccccCccccc-CCCCccCccccccC
Confidence 001111 111111 246677877
Q ss_pred -----------EeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 047470 514 -----------VAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582 (757)
Q Consensus 514 -----------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA 582 (757)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|++||
T Consensus 208 ~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta 282 (298)
T cd07494 208 MLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282 (298)
T ss_pred cCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 3799998765432100 001123799999999999999999999999999999999999999999
Q ss_pred cccCC
Q 047470 583 YPVNF 587 (757)
Q Consensus 583 ~~~~~ 587 (757)
+++..
T Consensus 283 ~~~~~ 287 (298)
T cd07494 283 RDVTK 287 (298)
T ss_pred cccCC
Confidence 98754
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.9e-41 Score=348.89 Aligned_cols=252 Identities=36% Similarity=0.440 Sum_probs=185.8
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+|||||+|||++||+|.+.- ...++|..+ .........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~---------~~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDEN---------RRISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCC---------CCCCCCCCCCCCC
Confidence 7999999999999999997531 111122111 0011233567789
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTP 301 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 301 (757)
|||||||||+|+.. ++...||||+|+|+.+|++. ..++..++++++|+|+++++++|||||||.....
T Consensus 45 HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~---~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 45 HGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLD---DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred cHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEec---CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 99999999999853 22247999999999999998 5557889999999999999999999999987522
Q ss_pred CccCHHHHHHHHHHh-CCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCce
Q 047470 302 YFNDVIAIASLSAIE-NGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITD 379 (757)
Q Consensus 302 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 379 (757)
.+.+..++....+ +|++||+||||++ .....+...+++|+||+.+.+........
T Consensus 113 --~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~--------------------- 169 (254)
T cd07490 113 --EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS--------------------- 169 (254)
T ss_pred --CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC---------------------
Confidence 4555555545554 6999999999999 76677778899999998644321000000
Q ss_pred eeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhh
Q 047470 380 APLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSA 459 (757)
Q Consensus 380 ~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~ 459 (757)
.|
T Consensus 170 -------------------------------------------------~g----------------------------- 171 (254)
T cd07490 170 -------------------------------------------------FG----------------------------- 171 (254)
T ss_pred -------------------------------------------------Cc-----------------------------
Confidence 00
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccc
Q 047470 460 GTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELV 539 (757)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 539 (757)
.......+.+|... ....|||++|||.+|+++..... ..
T Consensus 172 -------------------------------~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~---------~~ 210 (254)
T cd07490 172 -------------------------------SSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN---------GD 210 (254)
T ss_pred -------------------------------ccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC---------CC
Confidence 01222233344432 45689999999999999652211 11
Q ss_pred cceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 540 TDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
..|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 211 ~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 211 GQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 27999999999999999999999999999999999999999985
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-41 Score=359.41 Aligned_cols=262 Identities=25% Similarity=0.205 Sum_probs=182.6
Q ss_pred cEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 143 VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 143 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
.+|||||||||.+||+|.+.- .....+.. ......|..||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~-------------~~~~~~d~~gH 40 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSD-------------EPGWTADDLGH 40 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh---------------------------cccccccc-------------CCCCcCCCCCC
Confidence 379999999999999998421 11111110 00115688999
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-----CCHHHHHHHHHHHHhCC---CcEEEeC
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-----SAASDVLAGMDQAIADG---VDIMSLS 294 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~S 294 (757)
||||||||++.... .....|+||+|+|+.+||+. ..| ....++++||+|+++.+ ++|||||
T Consensus 41 GT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~---~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~S 109 (291)
T cd04847 41 GTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLP---PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLS 109 (291)
T ss_pred hHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcC---CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEe
Confidence 99999999976432 12246999999999999998 432 56778999999999853 4999999
Q ss_pred CCCCCCCC--ccCHHHHHHH-HHHhCCcEEEEecCCCC-CCCC------------cccCCCceEEeccccccccceeeEE
Q 047470 295 LGFDQTPY--FNDVIAIASL-SAIENGIVVVCAAGNDG-FPRS------------IHNGAPWITTVGAGTLDRSFHATVT 358 (757)
Q Consensus 295 lG~~~~~~--~~~~~~~a~~-~a~~~Gi~vV~AAGN~g-~~~~------------~~~~ap~~itVgas~~~~~~~~~~~ 358 (757)
||...... ....+..++. .+.++|++||+||||++ .... .+..++++|+|||...+......-.
T Consensus 110 lG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~ 189 (291)
T cd04847 110 LGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR 189 (291)
T ss_pred cCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc
Confidence 99976221 1123444443 35689999999999999 4432 2345678999998644322100000
Q ss_pred eCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEec
Q 047470 359 LDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLT 438 (757)
Q Consensus 359 ~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~ 438 (757)
.|.
T Consensus 190 ----------------------------------------------------------------------~~~------- 192 (291)
T cd04847 190 ----------------------------------------------------------------------YSA------- 192 (291)
T ss_pred ----------------------------------------------------------------------ccc-------
Confidence 000
Q ss_pred cCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCC
Q 047470 439 DTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGV 518 (757)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 518 (757)
......+.|||+||.. ++.+||||+|||+
T Consensus 193 -------------------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~ 221 (291)
T cd04847 193 -------------------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGG 221 (291)
T ss_pred -------------------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCC
Confidence 0011234499999998 6999999999999
Q ss_pred CeEecccCCCCc-----cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 519 DVLAAVAPNIPF-----IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 519 ~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
+|.+..+..... ...........|..++|||||||+|||++|||++++|+++|++||++|++||+
T Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 222 NLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 998865432100 00001112247999999999999999999999999999999999999999985
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1e-40 Score=349.19 Aligned_cols=239 Identities=35% Similarity=0.461 Sum_probs=198.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+ +|+||+|+|||+||+++||+|... ++...+++.++
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC-----------
Confidence 4589988 999999999999999999998532 22222333221
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++ ..+ +...+++++|+++++.+++
T Consensus 61 --~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~---~~~~~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 61 --DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLD---ANGSGSLADIANGIRYAADKGAK 127 (260)
T ss_pred --CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEEC---CCCCcCHHHHHHHHHHHHHCCCe
Confidence 1225678899999999999874322 2357999999999999998 544 7788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||||||... ....+..++..+.++|++||+||||+| ....+++..+++|+||+.+.
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------- 185 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------- 185 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------------
Confidence 9999999864 345666677788899999999999999 76788888899999987422
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++|+.. |++|||++|+++.+..
T Consensus 186 -----------------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~- 215 (260)
T cd07484 186 -----------------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPDG- 215 (260)
T ss_pred -----------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-
Confidence 12467899999877 9999999999987764
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPV 585 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~ 585 (757)
.|..++|||||||+|||++||+++++| +++.+||++|++||+++
T Consensus 216 ------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 ------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 799999999999999999999999999 99999999999999875
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-40 Score=352.56 Aligned_cols=206 Identities=33% Similarity=0.385 Sum_probs=165.3
Q ss_pred CCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHH----------
Q 047470 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAI---------- 284 (757)
Q Consensus 215 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~---------- 284 (757)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++ ..+...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~---~~~~~~~~i~~a~~~a~~~~~~~~~~~ 134 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLG---KCGGTLSDIVDGMRWAAGLPVPGVPVN 134 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEec---CCCCcHHHHHHHHHHHhccCcCCCccc
Confidence 35567899999999999985422 2247999999999999998 66668899999999998
Q ss_pred hCCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCC
Q 047470 285 ADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNG 362 (757)
Q Consensus 285 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~ 362 (757)
.++++|||||||..... ...+..++..+.++|++||+||||++ .. ...+...+++|+||+.+.
T Consensus 135 ~~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 199 (285)
T cd07496 135 PNPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------- 199 (285)
T ss_pred CCCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-------------
Confidence 45789999999987521 45677777788999999999999999 54 556677788999987421
Q ss_pred cEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 363 LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 363 ~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEe
Q 047470 443 IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLA 522 (757)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 522 (757)
.+.++.||++|+.. ||+|||++|.+
T Consensus 200 -----------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~ 224 (285)
T cd07496 200 -----------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCAS 224 (285)
T ss_pred -----------------------------------------------CCCcccccCCCCCC--------CEEeCCCCccc
Confidence 22578899999987 99999999998
Q ss_pred cccCCCCcc--ccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 523 AVAPNIPFI--EIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 523 a~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
+........ ..........|..++|||||||+|||++||++|++|+|++++||++|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 225 DVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 876542110 00111223478999999999999999999999999999999999999976
No 25
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2e-40 Score=353.30 Aligned_cols=276 Identities=32% Similarity=0.352 Sum_probs=198.0
Q ss_pred CCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCC
Q 047470 136 SARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDS 215 (757)
Q Consensus 136 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~ 215 (757)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.+ .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 58899999999999999999999976321 0001 12334443333221 1
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC--CCHHHHHHHHHHHHhCCCcEEEe
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE--SAASDVLAGMDQAIADGVDIMSL 293 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~ 293 (757)
..|..+|||||||||+|+..+... ...+.|+||+|+|+.+|+++ ..+ ....++..+++++.+.+++||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vin~ 121 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGD---TSGNLSSPPDLNKLFSPMYDAGARISSN 121 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeec---cCccccCCccHHHHHHHHHHhCCEEEec
Confidence 227899999999999998644321 11358999999999999988 443 56677889999999999999999
Q ss_pred CCCCCCCCCccCHHHHHHHHHH-h-CCcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEEEE
Q 047470 294 SLGFDQTPYFNDVIAIASLSAI-E-NGIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKG 367 (757)
Q Consensus 294 SlG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g 367 (757)
|||...... ......++.++. + +|++||+||||++ ... ..+...+++|+||+.+.+......
T Consensus 122 S~G~~~~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----------- 189 (293)
T cd04842 122 SWGSPVNNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----------- 189 (293)
T ss_pred cCCCCCccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----------
Confidence 999876321 223333333333 3 8999999999999 443 566778999999986543221000
Q ss_pred EeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCC
Q 047470 368 ISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDE 447 (757)
Q Consensus 368 ~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~ 447 (757)
.|..
T Consensus 190 -------------------------~~~~--------------------------------------------------- 193 (293)
T cd04842 190 -------------------------GGLG--------------------------------------------------- 193 (293)
T ss_pred -------------------------cccc---------------------------------------------------
Confidence 0000
Q ss_pred ccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCC
Q 047470 448 YYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPN 527 (757)
Q Consensus 448 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 527 (757)
.......++.||++||+. ++++||||+|||++|+++.+..
T Consensus 194 --------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~ 233 (293)
T cd04842 194 --------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGG 233 (293)
T ss_pred --------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCC
Confidence 011234689999999998 6899999999999999997553
Q ss_pred CCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC--------CCCHHHHHHHHHhccc
Q 047470 528 IPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR--------DWSPAAIRSAIMTTAY 583 (757)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p--------~~s~~~ik~~L~~TA~ 583 (757)
.. ........|..++|||||||+|||++|||+|++| .+++.++|++|++||+
T Consensus 234 ~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 234 GG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 10 0111223789999999999999999999999854 5667799999999985
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-40 Score=350.73 Aligned_cols=264 Identities=31% Similarity=0.415 Sum_probs=181.8
Q ss_pred CCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCC
Q 047470 135 PSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFD 214 (757)
Q Consensus 135 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~ 214 (757)
..+++|+||+|||||+|||.+||+|.+... ...+|.+. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 457899999999999999999999985311 11112111 1
Q ss_pred CCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 047470 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLS 294 (757)
Q Consensus 215 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S 294 (757)
...|..||||||||||+|+..+ +...||||+|+|+.+|++.. ...+...++++||+||++.+++|||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~--~~~~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLG--DGGGGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeC--CCCCcHHHHHHHHHHHHHcCCCEEEec
Confidence 2467889999999999987543 22369999999999999872 233677789999999999999999999
Q ss_pred CCCCCCC----------CccCHHHHHHHHH---------------HhCCcEEEEecCCCC-CCCCccc-----CCCceEE
Q 047470 295 LGFDQTP----------YFNDVIAIASLSA---------------IENGIVVVCAAGNDG-FPRSIHN-----GAPWITT 343 (757)
Q Consensus 295 lG~~~~~----------~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g-~~~~~~~-----~ap~~it 343 (757)
||..... .....++.....+ .++|++||+||||++ ....... ..+..++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 9985411 1112222222233 689999999999998 4322111 0111222
Q ss_pred eccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHH
Q 047470 344 VGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQM 423 (757)
Q Consensus 344 Vgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~ 423 (757)
|++.
T Consensus 190 V~~V---------------------------------------------------------------------------- 193 (297)
T cd07480 190 VAAV---------------------------------------------------------------------------- 193 (297)
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 2210
Q ss_pred HHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCC
Q 047470 424 EEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP 503 (757)
Q Consensus 424 ~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 503 (757)
+ ..+....|+++.+.
T Consensus 194 ---------------~-------------------------------------------------~~~~~~~~~~~~~~- 208 (297)
T cd07480 194 ---------------G-------------------------------------------------ALGRTGNFSAVANF- 208 (297)
T ss_pred ---------------C-------------------------------------------------CCCCCCCccccCCC-
Confidence 0 01122233333332
Q ss_pred CCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 504 ISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 504 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
...||||+|||.+|+++.+.+ .|..++|||||||+|||++||++|++|.+++.+++.+|+....
T Consensus 209 ---~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~ 272 (297)
T cd07480 209 ---SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLT 272 (297)
T ss_pred ---CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHh
Confidence 245789999999999988765 8999999999999999999999999999998888888774322
Q ss_pred ccCCCCCccccCCCCCCCCCCCccCcc
Q 047470 584 PVNFAENEIGVVPATPLDFGAGHIDPN 610 (757)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~G~G~vd~~ 610 (757)
....... ........+|+|++++.
T Consensus 273 ~~~~~~~---~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 273 AARTTQF---APGLDLPDRGVGLGLAP 296 (297)
T ss_pred hcccCCC---CCCCChhhcCCceeecC
Confidence 2111100 22346668999999875
No 27
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.8e-40 Score=338.82 Aligned_cols=238 Identities=30% Similarity=0.352 Sum_probs=185.9
Q ss_pred cEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 143 VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 143 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
|+|||||+|||++||+|.+.. ++...+.+.. +.....|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 689999999999999998520 0111111111 01135678999
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC-CCCHHHHHHHHHHHHhCCCcEEEeCCCCCC-C
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE-ESAASDVLAGMDQAIADGVDIMSLSLGFDQ-T 300 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~-~ 300 (757)
||||||||+|+..+ ...+.|+||+|+|+.+|++. .. .+...++.++++++++.+++|||||||... .
T Consensus 43 GT~vAgiiag~~~~--------~~~~~Gvap~a~i~~~~~~~---~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 111 (242)
T cd07498 43 GTACAGVAAAVGNN--------GLGVAGVAPGAKLMPVRIAD---SLGYAYWSDIAQAITWAADNGADVISNSWGGSDST 111 (242)
T ss_pred HHHHHHHHHhccCC--------CceeEeECCCCEEEEEEEEC---CCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC
Confidence 99999999997532 22357999999999999998 44 367889999999999999999999999876 2
Q ss_pred CCccCHHHHHHHHHHh-CCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCc
Q 047470 301 PYFNDVIAIASLSAIE-NGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYIT 378 (757)
Q Consensus 301 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 378 (757)
......+..++..+.+ +|+++|+||||+| .....++..+++|+||+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------------- 162 (242)
T cd07498 112 ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------------- 162 (242)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------------
Confidence 3345667777777888 9999999999999 65556778899999997422
Q ss_pred eeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechh
Q 047470 379 DAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTS 458 (757)
Q Consensus 379 ~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~ 458 (757)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCcc
Q 047470 459 AGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYEL 538 (757)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 538 (757)
.+.+++||++||.. |++|||+++.......... .+..
T Consensus 163 -------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~ 199 (242)
T cd07498 163 -------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYP 199 (242)
T ss_pred -------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCC
Confidence 12468899999987 9999999998875442111 1112
Q ss_pred ccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 539 VTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
...|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2378999999999999999999999999999999999999976
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-39 Score=337.39 Aligned_cols=248 Identities=31% Similarity=0.429 Sum_probs=187.0
Q ss_pred CccEEEEEecCCccCCccccCCCCCCCCcccccc---ccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCC
Q 047470 141 QGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGR---CENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSAR 217 (757)
Q Consensus 141 ~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (757)
+||+|||||||||++||+|.+.. |... +..+.+... +. .+.. ..+|+.. ....++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~---~~-~~~~---~~~~~~~-------~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDG---NG-YVDD---IYGWNFV-------NNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCC---CC-cccC---CCccccc-------CCCCCCC
Confidence 68999999999999999999642 2211 111111110 00 0000 0011111 1224467
Q ss_pred CCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 218 DFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 218 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
|..+|||||||||+|...++. .+.|+||+|+|+.+|++. ..+ ++..+++++++++++.+++|||+|||
T Consensus 61 d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~---~~~~~~~~~~~~a~~~a~~~~~~vin~S~G 129 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLG---ADGSGTTSDAIKAIDYAVDMGAKIINNSWG 129 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeC---CCCCcCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 889999999999998754322 247999999999999998 555 78889999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC---CCccc--CCCceEEeccccccccceeeEEeCCCcEEEEEee
Q 047470 297 FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP---RSIHN--GAPWITTVGAGTLDRSFHATVTLDNGLTFKGISY 370 (757)
Q Consensus 297 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~---~~~~~--~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l 370 (757)
... ....+..++..+.++|++||+||||++ .. ..++. ..+++|+||+...
T Consensus 130 ~~~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~--------------------- 185 (259)
T cd07473 130 GGG---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS--------------------- 185 (259)
T ss_pred CCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC---------------------
Confidence 874 245666777788999999999999999 42 22332 2467777776321
Q ss_pred cCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccc
Q 047470 371 FPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYI 450 (757)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~ 450 (757)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCc
Q 047470 451 PSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPF 530 (757)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 530 (757)
.+.++.||++||.. ||+.|||.++++..+..
T Consensus 186 ---------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~--- 216 (259)
T cd07473 186 ---------------------------------------NDALASFSNYGKKT-------VDLAAPGVDILSTSPGG--- 216 (259)
T ss_pred ---------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeEeccCCC---
Confidence 22466799999863 59999999999976655
Q ss_pred cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 531 IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 217 ----------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 ----------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ----------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999985
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.1e-40 Score=342.04 Aligned_cols=242 Identities=24% Similarity=0.231 Sum_probs=173.1
Q ss_pred CCCCCC-CCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 132 GLWPSA-RYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 132 ~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
.+|+.. ..|+||+|+|||+|||.+||+|.++.... ..
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~------------------------------~~------------ 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL------------------------------IS------------ 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc------------------------------cC------------
Confidence 478774 35999999999999999999998531100 00
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh----C
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA----D 286 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~----~ 286 (757)
...+.|+++|||||||||+|... ..| +.||||+|+|+.+|+++ .++++++|++|++ .
T Consensus 44 --~~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~--------~~~~~~ai~~A~~~~~~~ 104 (277)
T cd04843 44 --GLTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR--------VSNTADAILDAADYLSPG 104 (277)
T ss_pred --CCCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC--------CCCHHHHHHHHHhccCCC
Confidence 01145778999999999998631 112 47999999999999975 2456667777766 3
Q ss_pred CCcEEEeCCCCCCCC------CccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc-------------cCCCceEEecc
Q 047470 287 GVDIMSLSLGFDQTP------YFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH-------------NGAPWITTVGA 346 (757)
Q Consensus 287 g~dVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~-------------~~ap~~itVga 346 (757)
++.+||||||..... .....+..++.++.++|+++|+||||++ ...... ...|++|+|||
T Consensus 105 ~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA 184 (277)
T cd04843 105 DVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGA 184 (277)
T ss_pred CEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEe
Confidence 567899999986411 1233455677788899999999999998 421110 01235566655
Q ss_pred ccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHH
Q 047470 347 GTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEV 426 (757)
Q Consensus 347 s~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~ 426 (757)
+..+
T Consensus 185 ~~~~---------------------------------------------------------------------------- 188 (277)
T cd04843 185 GSST---------------------------------------------------------------------------- 188 (277)
T ss_pred ccCC----------------------------------------------------------------------------
Confidence 3110
Q ss_pred HHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCC
Q 047470 427 DRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISP 506 (757)
Q Consensus 427 ~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 506 (757)
....++.|||+|+..
T Consensus 189 --------------------------------------------------------------~~~~~~~fSn~G~~v--- 203 (277)
T cd04843 189 --------------------------------------------------------------TGHTRLAFSNYGSRV--- 203 (277)
T ss_pred --------------------------------------------------------------CCCccccccCCCCcc---
Confidence 011378999999987
Q ss_pred CCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHH----h-CCCCCHHHHHHHHHhc
Q 047470 507 GILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKA----I-HRDWSPAAIRSAIMTT 581 (757)
Q Consensus 507 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~~s~~~ik~~L~~T 581 (757)
||+|||++|+++.+...... .+.....|..++|||||||||||++|||++ + +|+|+|+|||++|++|
T Consensus 204 -----di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t 275 (277)
T cd04843 204 -----DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTAT 275 (277)
T ss_pred -----ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhc
Confidence 99999999999987653210 011112457899999999999999999975 3 4999999999999999
Q ss_pred cc
Q 047470 582 AY 583 (757)
Q Consensus 582 A~ 583 (757)
+.
T Consensus 276 ~~ 277 (277)
T cd04843 276 GT 277 (277)
T ss_pred CC
Confidence 74
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.3e-40 Score=349.68 Aligned_cols=273 Identities=35% Similarity=0.504 Sum_probs=207.7
Q ss_pred EEEEEecCCccCCcccc-CCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 144 IIGIIDTGIWPESESFH-DKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 144 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
+|||||||||++||+|. .+ ....++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~----------------------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN----------------------FIWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT----------------------EEEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC----------------------cccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999998 32 0122344455554421 112345678899
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHH-hCCCcEEEeCCCCC--C
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAI-ADGVDIMSLSLGFD--Q 299 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~--~ 299 (757)
||||||+|+|.. . .+ .....|+||+|+|+.+|++. ..+....+++++|++++ +++++|||||||.. .
T Consensus 49 GT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~---~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFD---NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSS---TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred cchhhhhccccc-c-cc-----cccccccccccccccccccc---ccccccccccchhhhhhhccCCccccccccccccc
Confidence 999999999986 2 21 12247999999999999987 55677888999999999 89999999999883 2
Q ss_pred -CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCC
Q 047470 300 -TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPES 374 (757)
Q Consensus 300 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~ 374 (757)
.....+.+..+...+.++|+++|+||||++ ... ..+...+++|+||+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------------- 173 (282)
T PF00082_consen 119 PDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------------- 173 (282)
T ss_dssp SHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET-------------------------
T ss_pred cccccccccccccccccccCcceeecccccccccccccccccccccccccccccc-------------------------
Confidence 223344566667788899999999999998 433 34455577888886321
Q ss_pred CCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEE
Q 047470 375 VYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLI 454 (757)
Q Consensus 375 ~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~ 454 (757)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccC
Q 047470 455 LPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIG 534 (757)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 534 (757)
.+.++.||++|+... ++++||||+|||.+|++.++....
T Consensus 174 -----------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~----- 212 (282)
T PF00082_consen 174 -----------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR----- 212 (282)
T ss_dssp -----------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES-----
T ss_pred -----------------------------------ccccccccccccccc-cccccccccccccccccccccccc-----
Confidence 124688999976543 689999999999999988876521
Q ss_pred CCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCC
Q 047470 535 NYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 614 (757)
..|..++|||||||+|||++||++|++|+|++.+||.+|++||++..... ....+..||||+||+++|++
T Consensus 213 -----~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~-----~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 213 -----GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN-----GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp -----EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT-----SSSSHHHHTTSBE-HHHHHH
T ss_pred -----ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC-----CCCCCCCccCChhCHHHHhC
Confidence 15889999999999999999999999999999999999999999987211 23456688999999999874
No 31
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=6.5e-39 Score=329.13 Aligned_cols=225 Identities=39% Similarity=0.540 Sum_probs=183.4
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+|||||+||+.+||+|.+. +...++|... .. ....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~-----------~~-~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD-----------DN-NDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC-----------CC-CCCCCCCC
Confidence 799999999999999999853 1111222211 00 23567889
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQT 300 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 300 (757)
|||||||+|++..... .+.|+||+|+|+.+|+++ ..+ +...++++++++|++.+++|||||||...
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~---~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~- 108 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLN---DDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS- 108 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEEC---CCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC-
Confidence 9999999999875322 347999999999999998 555 66789999999999999999999999864
Q ss_pred CCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC--cccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCC
Q 047470 301 PYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS--IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYI 377 (757)
Q Consensus 301 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~--~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 377 (757)
....+..++..+.++|+++|+||||++ .... +++..+++|+||+.+.
T Consensus 109 --~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------- 158 (229)
T cd07477 109 --DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------------- 158 (229)
T ss_pred --CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------------
Confidence 234555666688899999999999999 5444 3777889999987422
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEech
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPT 457 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~ 457 (757)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCc
Q 047470 458 SAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYE 537 (757)
Q Consensus 458 ~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 537 (757)
.+.++.||++|+.. |+.|||++|+++.+.+
T Consensus 159 --------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~---------- 188 (229)
T cd07477 159 --------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN---------- 188 (229)
T ss_pred --------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC----------
Confidence 12457899999976 9999999999998775
Q ss_pred cccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 538 LVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 ---~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 ---DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ---CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-39 Score=333.21 Aligned_cols=218 Identities=22% Similarity=0.280 Sum_probs=164.8
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
+++|+|||||||||++||+|.++ +...++|...... + ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~----~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G----NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c----ccCCCCCCCC
Confidence 78999999999999999999853 1112222211000 0 0001123568
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC----CCCHHHHHHHHHHHHhCCCcEEEeCC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE----ESAASDVLAGMDQAIADGVDIMSLSL 295 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~----g~~~~~i~~ai~~a~~~g~dVIn~Sl 295 (757)
.||||||||||+ |+||+|+|+.+|+++..... .++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999996 78999999999999832111 24677899999999999999999999
Q ss_pred CCCCCC---CccCHHHHHHHHHHhCCcEEEEecCCCC-CCC-C--cccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 296 GFDQTP---YFNDVIAIASLSAIENGIVVVCAAGNDG-FPR-S--IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 296 G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~-~--~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|..... .....+..++.+|.++|++||+||||+| ... . .+...|++|+|||.+.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~------------------- 171 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE------------------- 171 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-------------------
Confidence 986521 1256778888899999999999999999 443 3 3455688999987422
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++|+.. |++|||++|+++.+...
T Consensus 172 -----------------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~ 202 (247)
T cd07491 172 -----------------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPPL 202 (247)
T ss_pred -----------------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCCC
Confidence 22467899999987 99999999999875210
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH 566 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 566 (757)
...|..++|||||||||||++||+++..
T Consensus 203 ----------~~~~~~~sGTS~Atp~vaGvaAL~l~~~ 230 (247)
T cd07491 203 ----------SNSFVTHTGSSVATALAAGLAALILYCV 230 (247)
T ss_pred ----------CCCeeeeccHHHHHHHHHHHHHHHHHHH
Confidence 1279999999999999999999999853
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.6e-38 Score=338.87 Aligned_cols=147 Identities=28% Similarity=0.363 Sum_probs=104.0
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
.|+|||||||||++||+|.+.... ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999853110 000000000000000001111234567899
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQT 300 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 300 (757)
|||||||+|+|+.. ..||||+|+|+.+|+++ ..+ ....+++++|++|++++++|||||||....
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~---~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~ 119 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFG---SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLI 119 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeec---CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCC
Confidence 99999999998632 24999999999999998 555 488899999999999999999999998651
Q ss_pred C--------CccCHHHHHHHHHHhCCcEEEEecCCCC
Q 047470 301 P--------YFNDVIAIASLSAIENGIVVVCAAGNDG 329 (757)
Q Consensus 301 ~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g 329 (757)
. ...+.+..++..+.++|++||+||||+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g 156 (294)
T cd07482 120 IGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDG 156 (294)
T ss_pred CCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 1 1123456666678899999999999999
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-38 Score=321.90 Aligned_cols=221 Identities=23% Similarity=0.245 Sum_probs=170.9
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+|||||||||++||+|.+.... .+.+..+ . .........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~-~-------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL-E-------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc-c-------cccCCCCCCCCCC
Confidence 799999999999999999853110 0001000 0 0011133567889
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQT 300 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 300 (757)
|||||||||++ .+|+++|+.+|+++ ..+ +..+++++||+|+++++++|||||||....
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~---~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~ 104 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILG---EDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD 104 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeC---CCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 99999999984 46999999999998 555 788899999999999999999999998752
Q ss_pred CCccCHHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCcee
Q 047470 301 PYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDA 380 (757)
Q Consensus 301 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 380 (757)
.....+..++.++.++|+++|+||||++.....++..|.+|+||+...++
T Consensus 105 -~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~~----------------------------- 154 (222)
T cd07492 105 -RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTPPASFPNVIGVKSDTADD----------------------------- 154 (222)
T ss_pred -CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCceEEEEecCCCC-----------------------------
Confidence 22345666777888899999999999992223356667888888642110
Q ss_pred eeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhH
Q 047470 381 PLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAG 460 (757)
Q Consensus 381 p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g 460 (757)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCcccc
Q 047470 461 TSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVT 540 (757)
Q Consensus 461 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 540 (757)
.. +.+++. +|+.|||.+|+++.+.+
T Consensus 155 -------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~~------------- 179 (222)
T cd07492 155 -------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPHG------------- 179 (222)
T ss_pred -------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCCC-------------
Confidence 01 112333 49999999999988775
Q ss_pred ceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 541 DYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 541 ~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
No 35
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=329.50 Aligned_cols=363 Identities=25% Similarity=0.328 Sum_probs=264.8
Q ss_pred CCCceEEEEeCCCCCCCccccHHHHHHHhhcccCCC---CCCCCcEEEEecceeeEEEEEcCH-----HHHHHHHcCCCe
Q 047470 34 EDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYP---ADRNNMLLYSYNHVIQGFSARLTP-----SQLSEIEKSPAH 105 (757)
Q Consensus 34 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~g~s~~l~~-----~~~~~L~~~p~V 105 (757)
-.+.+|||.|+... ..+.++..+++.|+..... -.+....-..|...|.-+-++-.. -+++.|..+|.|
T Consensus 47 vve~EyIv~F~~y~---~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~v 123 (1033)
T KOG4266|consen 47 VVESEYIVRFKQYK---PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDV 123 (1033)
T ss_pred eecceeEEEecccc---cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCc
Confidence 35788999999876 2345566677766643311 001223334555566666665432 248899999999
Q ss_pred EEEEecccccccccC------------C------------------CCccC-----CCC-------CCCCCCCCCCCCcc
Q 047470 106 LATYPESFGKLFTTH------------S------------------PNFLG-----LKP-------NSGLWPSARYGQGV 143 (757)
Q Consensus 106 ~~V~~~~~~~~~~~~------------s------------------~~~~g-----~~~-------~~~~~~~~~~G~Gv 143 (757)
+.|.|.+.+...... . +.-|+ ... .+-+|.+|+||++|
T Consensus 124 k~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~V 203 (1033)
T KOG4266|consen 124 KVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKV 203 (1033)
T ss_pred eeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCce
Confidence 999998876541100 0 00000 000 03589999999999
Q ss_pred EEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCc
Q 047470 144 IIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHG 223 (757)
Q Consensus 144 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 223 (757)
+|||.|||+..+||.|+.- ....++++. ....|..|||
T Consensus 204 kvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD~lgHG 241 (1033)
T KOG4266|consen 204 KVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDDNLGHG 241 (1033)
T ss_pred EEEEeecccccCCccccch----------------------------hhhcCCcCc--------------cccccCcccc
Confidence 9999999999999999841 000111110 2356788999
Q ss_pred hhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC
Q 047470 224 THTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQTPY 302 (757)
Q Consensus 224 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 302 (757)
|.|||+|||.. .-.|.||+++|+++|||. +.- ...+++++|++||+...+||+|+|+|++. +
T Consensus 242 TFVAGvia~~~------------ec~gfa~d~e~~~frvft---~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--f 304 (1033)
T KOG4266|consen 242 TFVAGVIAGRN------------ECLGFASDTEIYAFRVFT---DAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--F 304 (1033)
T ss_pred eeEeeeeccch------------hhcccCCccceeEEEeec---cceeehhhHHHHHHHHHHhhhcceEeeccCCcc--c
Confidence 99999999873 136999999999999998 444 88999999999999999999999999984 4
Q ss_pred ccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCC--ceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCce
Q 047470 303 FNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAP--WITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITD 379 (757)
Q Consensus 303 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap--~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 379 (757)
.+.++-.-+......+|++|.|+||+| -.++..+++. .+|.||
T Consensus 305 mD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVG---------------------------------- 350 (1033)
T KOG4266|consen 305 MDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVG---------------------------------- 350 (1033)
T ss_pred ccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeec----------------------------------
Confidence 555665556678889999999999999 6666665543 233333
Q ss_pred eeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhh
Q 047470 380 APLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSA 459 (757)
Q Consensus 380 ~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~ 459 (757)
+
T Consensus 351 ---------------------------------------------------G---------------------------- 351 (1033)
T KOG4266|consen 351 ---------------------------------------------------G---------------------------- 351 (1033)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 2
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCC----CCCCCCceEEeCCCCeEecccCCCCccccCC
Q 047470 460 GTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPI----SPGILKPDIVAPGVDVLAAVAPNIPFIEIGN 535 (757)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 535 (757)
.+.++.++.|||||-+.. ..||+||||++-|.+|.......
T Consensus 352 ---------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~-------- 396 (1033)
T KOG4266|consen 352 ---------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST-------- 396 (1033)
T ss_pred ---------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc--------
Confidence 233558999999997542 45899999999999998765554
Q ss_pred CccccceEeeccccchhhhHhHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccc
Q 047470 536 YELVTDYALFSGTSMAAPHVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611 (757)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~ 611 (757)
+...+||||.|+|.|||+++||.+ +.--++|+.+|.+|+..|.+++.. .-++||+|++|+.+
T Consensus 397 -----GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---------NMfEQGaGkldLL~ 462 (1033)
T KOG4266|consen 397 -----GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---------NMFEQGAGKLDLLE 462 (1033)
T ss_pred -----cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC---------chhhccCcchhHHH
Confidence 678999999999999999999965 334569999999999999998643 45799999999999
Q ss_pred cCCCCceec
Q 047470 612 AMDPGLIYD 620 (757)
Q Consensus 612 Al~~~lv~d 620 (757)
+++--+-|.
T Consensus 463 syqiL~SYk 471 (1033)
T KOG4266|consen 463 SYQILKSYK 471 (1033)
T ss_pred HHHHHHhcC
Confidence 887433333
No 36
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=4e-38 Score=336.24 Aligned_cols=248 Identities=23% Similarity=0.235 Sum_probs=177.3
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|+|||||||++||+|.+.... ...++|.....
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~--------- 74 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP--------- 74 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC---------
Confidence 45899999999999999999999999999854211 01112211100
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcE
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dV 290 (757)
.+.....|..||||||||||+|+..+.. ...||||+|+|+.+|+++ .. .....+..++.++.+ .++|
T Consensus 75 ~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~---~~-~~~~~~~~~~~~~~~-~~~V 141 (297)
T cd04059 75 DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD---GD-VTDVVEAESLGLNPD-YIDI 141 (297)
T ss_pred CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecC---Cc-cccHHHHHHHhcccC-CceE
Confidence 0000113788999999999999853211 237999999999999997 33 334455566666554 4699
Q ss_pred EEeCCCCCCCC----CccCHHHHHHHHHHh-----CCcEEEEecCCCC-CCCC----cccCCCceEEeccccccccceee
Q 047470 291 MSLSLGFDQTP----YFNDVIAIASLSAIE-----NGIVVVCAAGNDG-FPRS----IHNGAPWITTVGAGTLDRSFHAT 356 (757)
Q Consensus 291 In~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g-~~~~----~~~~ap~~itVgas~~~~~~~~~ 356 (757)
||||||..... ........++.++.. +|++||+||||+| .... .....|++|+|||.+.
T Consensus 142 in~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------- 214 (297)
T cd04059 142 YSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------- 214 (297)
T ss_pred EECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-------
Confidence 99999986521 122233344444443 6999999999999 3221 1234567788876421
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEE
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF 436 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i 436 (757)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeC
Q 047470 437 LTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAP 516 (757)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 516 (757)
.+.++.||++|+.. +++||
T Consensus 215 -----------------------------------------------------~g~~~~~s~~g~~~--------~~~a~ 233 (297)
T cd04059 215 -----------------------------------------------------NGVRASYSEVGSSV--------LASAP 233 (297)
T ss_pred -----------------------------------------------------CCCCcCCCCCCCcE--------EEEec
Confidence 23568899999988 99999
Q ss_pred CCC-------eEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 517 GVD-------VLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 517 G~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
|.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 234 g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 234 SGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 987 666654420 126789999999999999999999999999999999999999985
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=7.4e-37 Score=321.24 Aligned_cols=241 Identities=29% Similarity=0.317 Sum_probs=182.1
Q ss_pred CCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCC
Q 047470 139 YGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARD 218 (757)
Q Consensus 139 ~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d 218 (757)
+|+||+|+|||+||+.+||+|.+...... .+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccc---------cccCCCCCC
Confidence 69999999999999999999986421100 000000 000123456
Q ss_pred CCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC--CCCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 219 FFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE--ESAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 219 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~--g~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++ .. ......+.++++++++.+++|||||||
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g 112 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASA---SAGSTFSDADIAAAYDFLAASGVRIINNSWG 112 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccC---CCCcccchHHHHHHHHHHHhCCCeEEEccCC
Confidence 789999999999998533 3357999999999999998 44 356778889999999999999999999
Q ss_pred CCCCC------------CccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc---------cCCCceEEeccccccccce
Q 047470 297 FDQTP------------YFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH---------NGAPWITTVGAGTLDRSFH 354 (757)
Q Consensus 297 ~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~---------~~ap~~itVgas~~~~~~~ 354 (757)
..... ...+.+......+.++|+++|+||||++ ...... ...+++|+||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~---- 188 (267)
T cd04848 113 GNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN---- 188 (267)
T ss_pred CCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC----
Confidence 87621 1445666677788899999999999998 432221 234567777764221
Q ss_pred eeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEE
Q 047470 355 ATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAA 434 (757)
Q Consensus 355 ~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g 434 (757)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCcccc--ccCCCCCCCCCCCCCce
Q 047470 435 IFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVAS--FSSRGPDPISPGILKPD 512 (757)
Q Consensus 435 ~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~lKPD 512 (757)
+.... ||++|+... .++
T Consensus 189 --------------------------------------------------------~~~~~~~~s~~~~~~~-----~~~ 207 (267)
T cd04848 189 --------------------------------------------------------GTIASYSYSNRCGVAA-----NWC 207 (267)
T ss_pred --------------------------------------------------------CCcccccccccchhhh-----hhe
Confidence 12233 488887542 347
Q ss_pred EEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 513 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
++|||.+|+++.+... ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 208 ~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 208 LAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred eecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999887311 17889999999999999999999999999999999999999985
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-34 Score=316.71 Aligned_cols=364 Identities=24% Similarity=0.283 Sum_probs=235.9
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQ 299 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 299 (757)
..||||||||++|+.... ....||||+|+|+++++.+..-..-.+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 459999999999997543 234699999999999998732111246677899999999999999999999887
Q ss_pred -CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccC---CCceEEeccccccccceeeEEeCCCcEEEEEeecCCC
Q 047470 300 -TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNG---APWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPES 374 (757)
Q Consensus 300 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~---ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~ 374 (757)
-+.....++++-..+.++|+++|.||||+| ...+++.+ ...+|.|||--..
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp------------------------ 437 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSP------------------------ 437 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCH------------------------
Confidence 455566777666666699999999999999 66655432 2366666652100
Q ss_pred CCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEE
Q 047470 375 VYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLI 454 (757)
Q Consensus 375 ~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~ 454 (757)
.+.+...++.
T Consensus 438 -------------------------------------------~mm~a~y~~~--------------------------- 447 (1304)
T KOG1114|consen 438 -------------------------------------------GMMQAEYSVR--------------------------- 447 (1304)
T ss_pred -------------------------------------------HHHHhhhhhh---------------------------
Confidence 0000000000
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccC
Q 047470 455 LPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIG 534 (757)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 534 (757)
..-......+|||||+. ||.+--.|+|||+.|.+- |..
T Consensus 448 --------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~------- 485 (1304)
T KOG1114|consen 448 --------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY------- 485 (1304)
T ss_pred --------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chh-------
Confidence 01123578899999999 899999999999998663 221
Q ss_pred CCccccceEeeccccchhhhHhHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCcc
Q 047470 535 NYELVTDYALFSGTSMAAPHVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPN 610 (757)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~ 610 (757)
....-+.|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.++.+. .++.||.|++++.
T Consensus 486 ---tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i---------d~faqG~GmlqVd 553 (1304)
T KOG1114|consen 486 ---TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI---------DSFAQGQGMLQVD 553 (1304)
T ss_pred ---hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc---------chhccCcceeehh
Confidence 112567899999999999999999865 567899999999999999999654 5789999999999
Q ss_pred ccCCCCceecCCchhhHHhh-hcCCCC-ccceeeeeeccccCCCCCCCCCCCCeEEeeecCCCceEEEEEEEeecCCCce
Q 047470 611 KAMDPGLIYDADFQDYVEFL-CGLGYD-EKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTNETTAKNFSRVVKNVGAEDS 688 (757)
Q Consensus 611 ~Al~~~lv~d~~~~dy~~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~rtvtnv~~~~~ 688 (757)
+|.+--.-.+...+.-+.|+ -..|.+ ...|.+-. ....|+. .+++. .+.- .|.--..|- ....
T Consensus 554 kAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyLRe--p~~~~~p--~e~~i---~VeP-------iF~~~~e~~-keki 618 (1304)
T KOG1114|consen 554 KAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYLRE--PTQVCSP--SEHTI---GVEP-------IFENGEENE-KEKI 618 (1304)
T ss_pred HHHHHHHHhhhcCCccceeEEEeeccccccceEecC--CcccCCc--cccce---eccc-------cccCccccc-cccc
Confidence 99872111122222222221 000101 11111111 1112221 11111 0000 000000011 1112
Q ss_pred eEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEEC----CccEEEEEEEEEe
Q 047470 689 IYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQ----YNHTVSSPVVAIK 756 (757)
Q Consensus 689 ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~----~~~~v~~P~~v~~ 756 (757)
.|.+.+..-..-.+.-.|+.+-+. ++.+.|.|+|+++....+.+++.|.--|. .++..|||+.|..
T Consensus 619 ~Fe~~L~L~st~pwVq~p~~l~l~--~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 619 SFEVQLSLASTQPWVQCPEYLMLA--NQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIK 688 (1304)
T ss_pred cceeeEeeecCCcceeCchhheec--cCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEEc
Confidence 233332222222244457766654 78899999999999889999999888776 5799999999863
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=5e-32 Score=278.07 Aligned_cols=193 Identities=24% Similarity=0.220 Sum_probs=139.6
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHH--HhCCCcEEEe
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQA--IADGVDIMSL 293 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a--~~~g~dVIn~ 293 (757)
..|.++|||||||||||. .|++|+|+|+..++.. . ..+.+..+++|+ .+.+++||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~---~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---K---SNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---C---CCCccHHHHHHHHHhcCCceEEEe
Confidence 567899999999999987 3677999998765532 1 233466777887 6679999999
Q ss_pred CCCCCCCC------CccCHHHHHHHHHHhC-CcEEEEecCCCC-CCC-----CcccCCCceEEeccccccccceeeEEeC
Q 047470 294 SLGFDQTP------YFNDVIAIASLSAIEN-GIVVVCAAGNDG-FPR-----SIHNGAPWITTVGAGTLDRSFHATVTLD 360 (757)
Q Consensus 294 SlG~~~~~------~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~~~-----~~~~~ap~~itVgas~~~~~~~~~~~~~ 360 (757)
|||..... ...+.+..++..+.++ |+++|+||||+| ... ..+..++++|+|||......
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 99987522 1234556666666655 999999999999 432 12345678888887522110
Q ss_pred CCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccC
Q 047470 361 NGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 361 ~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCe
Q 047470 441 PDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDV 520 (757)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 520 (757)
....+.||++|.....++..||||+|||++|
T Consensus 164 -------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i 194 (247)
T cd07488 164 -------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNY 194 (247)
T ss_pred -------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeE
Confidence 0023456665433323678999999999999
Q ss_pred EecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCC------HHHHHHHHHhc
Q 047470 521 LAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWS------PAAIRSAIMTT 581 (757)
Q Consensus 521 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s------~~~ik~~L~~T 581 (757)
++ +.+ .|..++|||||||||||++|||++++|++. -.++|.+|+.|
T Consensus 195 ~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 195 NL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 98 332 688999999999999999999999988766 34567777665
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=6.9e-30 Score=263.07 Aligned_cols=194 Identities=39% Similarity=0.521 Sum_probs=154.1
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHH-hCCCcEEEe
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAI-ADGVDIMSL 293 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~ 293 (757)
..+..+||||||++|++...... ..|+||+++|+.+|+.. ..+ .....+++++++++ ..+++||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~---~~~~~~~~~~~~ai~~~~~~~~~~iin~ 107 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLD---GDGSGSSSDIAAAIDYAAADQGADVINL 107 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEec---CCCCcCHHHHHHHHHHHHhccCCCEEEe
Confidence 55678999999999998853321 16999999999999988 444 67888999999999 899999999
Q ss_pred CCCCCCCCCccCHHHHHHHHHHhC-CcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 294 SLGFDQTPYFNDVIAIASLSAIEN-GIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 294 SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||..... ....+...+..+.++ |+++|+|+||.+ ... ..+...+++|+||+.+.+.
T Consensus 108 S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 108 SLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 99987522 344566666677777 999999999999 544 4677789999999853321
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccc-cccCCCCCCCCCCCCCceEEeCCCCeEecccCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVA-SFSSRGPDPISPGILKPDIVAPGVDVLAAVAPN 527 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 527 (757)
... .++++|+ |||+.|||..+.......
T Consensus 170 -------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~~ 198 (241)
T cd00306 170 -------------------------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTTG 198 (241)
T ss_pred -------------------------------------------CccCCcCCCCC--------CceEEeCcCCccCcccCC
Confidence 111 3444444 569999999998751111
Q ss_pred CCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 528 IPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
...+..++|||||||+|||++||++|++|++++.++|.+|++|
T Consensus 199 -----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 199 -----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1278999999999999999999999999999999999999875
No 41
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3e-25 Score=224.11 Aligned_cols=302 Identities=20% Similarity=0.260 Sum_probs=189.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++||+|+++|.|.||||.|||+..+ | .-..+++|.. +++
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfss---------ndp 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSS---------NDP 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c-------Cceeeccccc---------CCC
Confidence 46899999999999999999999999999842 1 1223344432 122
Q ss_pred CCCCCCCC--CCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-CC
Q 047470 211 YDFDSARD--FFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DG 287 (757)
Q Consensus 211 ~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~-~g 287 (757)
.++....| .+.|||.|||-+++... ++.+|. |||.+.++..+|+++. -...|+++|-....+ ..
T Consensus 197 fpyprytddwfnshgtrcagev~aard--ngicgv------gvaydskvagirmldq-----pymtdlieansmghep~k 263 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARD--NGICGV------GVAYDSKVAGIRMLDQ-----PYMTDLIEANSMGHEPSK 263 (629)
T ss_pred CCCCcccchhhhccCccccceeeeecc--CCceee------eeeeccccceeeecCC-----chhhhhhhhcccCCCCce
Confidence 33333333 57899999999887653 345554 9999999999999982 455677665433222 35
Q ss_pred CcEEEeCCCCCCCCCccC----HHHHHHHHHH-----hCCcEEEEecCCCC--CCCCcc--cCCCceEEeccccccccce
Q 047470 288 VDIMSLSLGFDQTPYFND----VIAIASLSAI-----ENGIVVVCAAGNDG--FPRSIH--NGAPWITTVGAGTLDRSFH 354 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~----~~~~a~~~a~-----~~Gi~vV~AAGN~g--~~~~~~--~~ap~~itVgas~~~~~~~ 354 (757)
.+|.+.|||.......-| +.-.++-+-+ ..|-++|.|.|..| +.+... +.+-|.|++-+.-.|..-
T Consensus 264 ihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~n- 342 (629)
T KOG3526|consen 264 IHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGEN- 342 (629)
T ss_pred EEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCcc-
Confidence 789999999876322222 2222222222 24568999999888 333222 223355555432111000
Q ss_pred eeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEE
Q 047470 355 ATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAA 434 (757)
Q Consensus 355 ~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g 434 (757)
..| ++.|.
T Consensus 343 ---------------------------ahy------descs--------------------------------------- 350 (629)
T KOG3526|consen 343 ---------------------------AHY------DESCS--------------------------------------- 350 (629)
T ss_pred ---------------------------ccc------cchhh---------------------------------------
Confidence 000 01111
Q ss_pred EEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEE
Q 047470 435 IFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIV 514 (757)
Q Consensus 435 ~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 514 (757)
.-..+.||+-|..+..
T Consensus 351 -------------------------------------------------------stlastfsng~rnpet--------- 366 (629)
T KOG3526|consen 351 -------------------------------------------------------STLASTFSNGGRNPET--------- 366 (629)
T ss_pred -------------------------------------------------------HHHHHHhhcCCcCCCc---------
Confidence 0023567776655421
Q ss_pred eCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccc-
Q 047470 515 APGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIG- 593 (757)
Q Consensus 515 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~- 593 (757)
| +..+ |.++......||||.|+|-.||+.||.++++|.|++.+++.+-.-|++.....+..-.
T Consensus 367 --g--vatt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf 430 (629)
T KOG3526|consen 367 --G--VATT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRF 430 (629)
T ss_pred --c--eeee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceE
Confidence 1 1111 1112256678999999999999999999999999999999887777765432111000
Q ss_pred ------cCCCCCCCCCCCccCccccCCCCceecCCchhhHHhhhcCCC
Q 047470 594 ------VVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGY 635 (757)
Q Consensus 594 ------~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~~~~ 635 (757)
.....+.-+|+|.+|+.+-+....-+...++ +|-|.-|.
T Consensus 431 ~w~mngvglefnhlfgfgvldagamv~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 431 EWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred EEeccccceeeecccccccccHHHHHHHHHHhccCCC---ceeecccc
Confidence 2233556799999999887776666666665 45688774
No 42
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.3e-23 Score=233.63 Aligned_cols=271 Identities=34% Similarity=0.451 Sum_probs=193.6
Q ss_pred CCCCCC--CCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCC
Q 047470 131 SGLWPS--ARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVS 208 (757)
Q Consensus 131 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~ 208 (757)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457777 89999999999999999999999864210 01121110
Q ss_pred CcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC-C-CCHHHHHHHHHHHHhC
Q 047470 209 KEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE-E-SAASDVLAGMDQAIAD 286 (757)
Q Consensus 209 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-g-~~~~~i~~ai~~a~~~ 286 (757)
+.....|..+|||||+|++++.... ......|+||+++++.+|++. .. | ....+++.+|+++++.
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~---~~~g~~~~~~~~~~i~~~~~~ 241 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLG---SGGGSGELSDVAEGIEGAANL 241 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEecc---CCCCcccHHHHHHHHHHHHhc
Confidence 0002568899999999999984211 112247999999999999998 44 5 7778889999999999
Q ss_pred C--CcEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEecCCCC-CCCC----cccCC--CceEEeccccccccceee
Q 047470 287 G--VDIMSLSLGFDQTPYFNDVIAIASLSAIENG-IVVVCAAGNDG-FPRS----IHNGA--PWITTVGAGTLDRSFHAT 356 (757)
Q Consensus 287 g--~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g-~~~~----~~~~a--p~~itVgas~~~~~~~~~ 356 (757)
+ +++||||+|..........+..++..+...| +++|+|+||.+ +... .+... +.+++||+..
T Consensus 242 ~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~-------- 313 (508)
T COG1404 242 GGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD-------- 313 (508)
T ss_pred CCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC--------
Confidence 9 9999999998511123345555555777777 99999999999 4321 11111 1334444321
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEE
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF 436 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i 436 (757)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeC
Q 047470 437 LTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAP 516 (757)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 516 (757)
..+.++.||++|+.. ..+++||
T Consensus 314 ----------------------------------------------------~~~~~~~~s~~g~~~------~~~~~ap 335 (508)
T COG1404 314 ----------------------------------------------------LSDTVASFSNDGSPT------GVDIAAP 335 (508)
T ss_pred ----------------------------------------------------CCCccccccccCCCC------CcceeCC
Confidence 123678999999852 1299999
Q ss_pred CCCeEe-----cccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC-CCCHHHHHHHHHhcccccCCCCC
Q 047470 517 GVDVLA-----AVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR-DWSPAAIRSAIMTTAYPVNFAEN 590 (757)
Q Consensus 517 G~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~~s~~~ik~~L~~TA~~~~~~~~ 590 (757)
|.+|.+ .+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .
T Consensus 336 g~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~---- 399 (508)
T COG1404 336 GVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-T---- 399 (508)
T ss_pred CccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-c----
Confidence 999998 444431 1499999999999999999999999999 89999999998888874 1
Q ss_pred ccccCCCCCCCCCCCccCccccCC
Q 047470 591 EIGVVPATPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 591 ~~~~~~~~~~~~G~G~vd~~~Al~ 614 (757)
........++.|..+...+..
T Consensus 400 ---~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 ---PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ---cCCccccccccCccccccccc
Confidence 112244567777666655554
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=4.9e-17 Score=177.38 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=79.9
Q ss_pred ceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhC---CCcEEEeCCCCCCCC---CccCHHHHHHHHHHhCCcE
Q 047470 247 TARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIAD---GVDIMSLSLGFDQTP---YFNDVIAIASLSAIENGIV 320 (757)
Q Consensus 247 ~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~ 320 (757)
.+.||||+|+|+.|++.+ +. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~---~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPG---TV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECC---cC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 357999999999999987 32 45677888888887 999999999997522 2335677777888999999
Q ss_pred EEEecCCCC-CCC-----------CcccCCCceEEecccccccc
Q 047470 321 VVCAAGNDG-FPR-----------SIHNGAPWITTVGAGTLDRS 352 (757)
Q Consensus 321 vV~AAGN~g-~~~-----------~~~~~ap~~itVgas~~~~~ 352 (757)
||+|+||+| ... ..++..||+++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999999999 432 24677899999999877644
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.21 E-value=1.1e-10 Score=110.32 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=92.2
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----CCCC-CccccE
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----IDSD-EYYIPS 452 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~~~~-~~~~p~ 452 (757)
...+++|.+. |.+.++...+++|||+||+|+. |.+.+|..+++.+|| .|+|++|+.. .... ...+|+
T Consensus 26 ~~~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~-c~~~~K~~~a~~aGA-~gvIi~n~~~~~~~~~~~~~~~iP~ 97 (143)
T cd02133 26 KTYELVDAGL------GTPEDFEGKDVKGKIALIQRGE-ITFVEKIANAKAAGA-VGVIIYNNVDGLIPGTLGEAVFIPV 97 (143)
T ss_pred cEEEEEEccC------CchhccCCCCccceEEEEECCC-CCHHHHHHHHHHCCC-eEEEEeecCCCcccccCCCCCeEeE
Confidence 6788998664 6566677778999999999999 999999999999999 9999998876 1111 246899
Q ss_pred EEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCC
Q 047470 453 LILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP 503 (757)
Q Consensus 453 ~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 503 (757)
++|+..+|+.|++|+++ .+++.+..+.. ..+.+.++.||||||+.
T Consensus 98 v~Is~~dG~~L~~~l~~-----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 98 VFISKEDGEALKAALES-----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred EEecHHHHHHHHHHHhC-----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 99999999999999986 45677776655 45677899999999974
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.19 E-value=2.4e-10 Score=105.67 Aligned_cols=114 Identities=33% Similarity=0.621 Sum_probs=94.2
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccC---CCCcccccCCCCCCCCccceEEEEeCCCCC-chhHHHHHHHHcCCe
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKN---DVNKSICHLGSLNPDEVTGKVVFCDNSNRI-DTYSQMEEVDRAGAY 432 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~---~~~~~~c~~~~~~~~~~~gkivl~~~g~~~-~~~~k~~~~~~~Ga~ 432 (757)
++++||.++.|++++++.. ..+|++|..+ ......|.+..++..+++|||++|+++. | .+.+|..++...||
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~-~~~~~~k~~~~~~~GA- 77 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGG-NTSRVAKGDAVKAAGG- 77 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCC-CccHHHHHHHHHHcCC-
Confidence 6789999999999997653 4667776333 3345789988888899999999999998 9 89999999999999
Q ss_pred EEEEeccCCC----CCCCCccccEEEechhhHHHHHHHHhcCCCCce
Q 047470 433 AAIFLTDTPD----IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKV 475 (757)
Q Consensus 433 ~g~i~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 475 (757)
.|+|++++.. .......+|++.|+..+|+.|++|+++.. +++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~-~~~ 123 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTS-NPT 123 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCC-Ccc
Confidence 9999998775 22224679999999999999999999876 443
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.89 E-value=2.9e-09 Score=90.26 Aligned_cols=80 Identities=33% Similarity=0.602 Sum_probs=57.8
Q ss_pred eEEEEeCCCCCCCc-cccHHHHHHHhhcccCCC-CCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEeccccc
Q 047470 38 TYIIHMDHSHKPSA-FLTHESWHLSILKSASYP-ADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGK 115 (757)
Q Consensus 38 ~yIV~l~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 115 (757)
+|||.|++...... ...+.+++.+++.+.... ...+.++.+.|...||||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999975544 566777777554431100 0127899999998899999999999999999999999999999887
Q ss_pred cc
Q 047470 116 LF 117 (757)
Q Consensus 116 ~~ 117 (757)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 53
No 47
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.68 E-value=3.3e-08 Score=87.40 Aligned_cols=88 Identities=22% Similarity=0.455 Sum_probs=71.3
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--------CCCCCcc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--------IDSDEYY 449 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--------~~~~~~~ 449 (757)
...|+++.........|.+......+++|||+||+||. |.|.+|..+++.+|| .|+|++|... .......
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~-~~~~~k~~~a~~~GA-~gvIi~~~~~~~~~~~~~~~~~~~~ 83 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGS-CSFDDKVRNAQKAGA-KGVIIYNPPPNNGSMIDSEDPDPID 83 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTS-SCHHHHHHHHHHTTE-SEEEEE-TSCSCTTTTCEBTTTSTB
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCC-CCHHHHHHHHHHcCC-EEEEEEeCCccccCcccccCCCCcE
Confidence 35677755544456678888899999999999999999 999999999999999 9999999211 2344678
Q ss_pred ccEEEechhhHHHHHHHH
Q 047470 450 IPSLILPTSAGTSIRQYV 467 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~ 467 (757)
+|+++|+..+|+.|++|+
T Consensus 84 iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 84 IPVVFISYEDGEALLAYI 101 (101)
T ss_dssp SEEEEE-HHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhhccC
Confidence 999999999999999985
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.66 E-value=3.3e-07 Score=84.03 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=75.2
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC------C-CC--CCc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD------I-DS--DEY 448 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~------~-~~--~~~ 448 (757)
-..++++... ...+.|.+..+...+++|||+||+||. |.+.+|..+++.+|| .++|++|+.. . .. ...
T Consensus 17 i~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~-c~f~~K~~~A~~aGA-~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 17 VTAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGG-CPFADKQKVAAARGA-VAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred cEEEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEeCCCCccccccccCCCCCC
Confidence 3556777542 234789998888889999999999999 999999999999999 9999998765 1 11 234
Q ss_pred cccEEEechhhHHHHHHHHhcCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
.+|.++|+..+|+.|++++.++.
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~ 116 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGE 116 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCC
Confidence 59999999999999999998865
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.61 E-value=2.2e-07 Score=83.62 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=73.1
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCC-C-----C--CCcc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDI-D-----S--DEYY 449 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~-~-----~--~~~~ 449 (757)
..+|++.... ...|.+..+.+.+++|||+|++||. |+|.+|..+++.+|| .++|++|+... . . ....
T Consensus 20 ~~~~~~~~~~---~~gC~~~~~~~~~l~gkIaLV~RG~-CsF~~K~~~Aq~aGA-~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLTS---SVLCSASDVPPGGLKGKAVVVMRGN-CTFYEKARLAQSLGA-EGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCCC---cCCCCccccCccccCCeEEEEECCC-cCHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCcCCc
Confidence 4566665443 5779998888889999999999999 999999999999999 99999998761 1 1 2346
Q ss_pred ccEEEechhhHHHHHHHHhcC
Q 047470 450 IPSLILPTSAGTSIRQYVTGK 470 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~ 470 (757)
||+++|+..+|+.|++.+.+.
T Consensus 95 IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred ccEEEEeHHHHHHHHHHhccC
Confidence 899999999999999988753
No 50
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3e-07 Score=101.55 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
...|..+++|+++.|+|.|+|++..||++... ....+..++...- .++
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~p 70 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------NDP 70 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CCc
Confidence 46899999999999999999999999999842 1122333332210 112
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-CCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~-~g~d 289 (757)
.+..+......|||-|++-.+....+ ... ..|+++++++..++++.. ..++...+...... .-++
T Consensus 71 ~~~~~~~~~~~~g~~Ca~~~a~~~~~--~~C------~vg~~~~~~~~g~~~l~~------~v~~~~~~~~~~~~~~~~d 136 (431)
T KOG3525|consen 71 EPRCDGTNENKHGTRCAGCVAARANN--LTC------GVGVAYNATIGGIRMLAG------CVSDAVEAPSLGFGPCHID 136 (431)
T ss_pred ccccCCCCccccCCCCCcccccccCC--CcC------CCCcccCccccceeeeee------ecccceecccccCCCCCce
Confidence 22223334688999999999987522 122 259999999999999872 22233333222222 3578
Q ss_pred EEEeCCCCCCCCC----ccCHHHHHHHH-----HHhCCcEEEEecCCCC
Q 047470 290 IMSLSLGFDQTPY----FNDVIAIASLS-----AIENGIVVVCAAGNDG 329 (757)
Q Consensus 290 VIn~SlG~~~~~~----~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g 329 (757)
+-+.|||...... .......+... ...+|-+.|+|.||.|
T Consensus 137 i~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg 185 (431)
T KOG3525|consen 137 IYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGG 185 (431)
T ss_pred eecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcc
Confidence 9999999876111 11122222222 2367889999999988
No 51
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.56 E-value=4.9e-07 Score=84.17 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCcccccCCCC--CCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----C---CCC-CccccEEEech
Q 047470 388 DVNKSICHLGSL--NPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----I---DSD-EYYIPSLILPT 457 (757)
Q Consensus 388 ~~~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~---~~~-~~~~p~~~i~~ 457 (757)
....+.|.+... ++.++.|+|+|++||. |.|.+|..+++.+|| .++|++|+.. . ..+ ...+|.++|+.
T Consensus 41 ~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~-C~F~~K~~nA~~aGA-~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~ 118 (138)
T cd02122 41 PNDHYGCDPDTRFPIPPNGEPWIALIQRGN-CTFEEKIKLAAERNA-SAVVIYNNPGTGNETVKMSHPGTGDIVAIMITN 118 (138)
T ss_pred CCCcCCCCCCccccCCccCCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCCCCceeeccCCCCCcceEEEEcH
Confidence 345678998776 6788999999999999 999999999999999 9999999874 1 111 24689999999
Q ss_pred hhHHHHHHHHhcCC
Q 047470 458 SAGTSIRQYVTGKN 471 (757)
Q Consensus 458 ~~g~~l~~~~~~~~ 471 (757)
.+|+.|++++.++.
T Consensus 119 ~~G~~l~~~l~~G~ 132 (138)
T cd02122 119 PKGMEILELLERGI 132 (138)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998876
No 52
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.50 E-value=6.7e-07 Score=80.96 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=68.4
Q ss_pred cccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-----C---CCC----CccccEEEechh
Q 047470 391 KSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-----I---DSD----EYYIPSLILPTS 458 (757)
Q Consensus 391 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-----~---~~~----~~~~p~~~i~~~ 458 (757)
.+.|.+.. ...+++|||+|++||. |.|.+|..+++.+|| .++|++|+.. . ..+ ...||+++|+..
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~-C~F~~K~~~Aq~aGA-~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGG-CSFLTKAINAQKAGA-LAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence 46798644 3568999999999999 999999999999999 9999998753 1 122 246999999999
Q ss_pred hHHHHHHHHhcCCCCceEEE
Q 047470 459 AGTSIRQYVTGKNKSKVKSM 478 (757)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~~i 478 (757)
+|+.|++.+..+. .+.+.|
T Consensus 98 dG~~L~~~l~~g~-~~~~~~ 116 (118)
T cd02127 98 NGYMIRKTLERLG-LPYAII 116 (118)
T ss_pred HHHHHHHHHHcCC-ceEEee
Confidence 9999999999877 444433
No 53
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.47 E-value=2.4e-06 Score=78.32 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=70.7
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCC-C-----CCC--CCcc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP-D-----IDS--DEYY 449 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~-~-----~~~--~~~~ 449 (757)
..-++++.. ...|.+..+ +.+++|||+|++||. |.|.+|..++...|| .++|++|+. . ... +...
T Consensus 22 ~~g~lv~~~----~~gC~~~~~-~~~~~gkIvlv~rg~-c~f~~K~~~A~~aGA-~~vIv~n~~~~~~~~~~~~~~~~~~ 94 (122)
T cd02130 22 VTGPLVVVP----NLGCDAADY-PASVAGNIALIERGE-CPFGDKSALAGAAGA-AAAIIYNNVPAGGLSGTLGEPSGPY 94 (122)
T ss_pred cEEEEEEeC----CCCCCcccC-CcCCCCEEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCCcccccccCCCCCCE
Confidence 345666643 356887655 357999999999999 999999999999999 999999887 3 111 2356
Q ss_pred ccEEEechhhHHHHHHHHhcCC
Q 047470 450 IPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
+|.++|+..+|+.|+..+.+++
T Consensus 95 Ip~v~Is~~~G~~L~~~l~~g~ 116 (122)
T cd02130 95 VPTVGISQEDGKALVAALANGG 116 (122)
T ss_pred eeEEEecHHHHHHHHHHHhcCC
Confidence 9999999999999999998876
No 54
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.44 E-value=4.1e-06 Score=75.54 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=58.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeC--------CCC----------c-EEEEecCeEEEeccceeEEEEEEEEEcc----C
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEF--------PAG----------M-NIRIEPSTLKFTQKYQLLDFALSVEIDR----E 729 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~--------p~g----------~-~v~v~p~~~~~~~~~~~~~~~vt~~~~~----~ 729 (757)
..+++.+|+|.|+.+.+|+++... ..| . .+...|..++++ +|++++|+|+|+.+. .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~-ag~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVP-AGQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEEC-CCCEEEEEEEEEehhcCCcc
Confidence 588999999999999999998661 111 1 677788899998 899999999999965 4
Q ss_pred CCceEEEEEEEEECCcc-EEEEEEE
Q 047470 730 SPRVSYGYLKWIDQYNH-TVSSPVV 753 (757)
Q Consensus 730 ~~~~~~G~~~~~~~~~~-~v~~P~~ 753 (757)
...+++|+|.|+++..+ .+++||.
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 58999999999998564 9999984
No 55
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.44 E-value=1.1e-06 Score=80.02 Aligned_cols=79 Identities=16% Similarity=0.337 Sum_probs=66.6
Q ss_pred CcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----CC----CCCccccEEEechhhHH
Q 047470 390 NKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----ID----SDEYYIPSLILPTSAGT 461 (757)
Q Consensus 390 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~~----~~~~~~p~~~i~~~~g~ 461 (757)
..+.|.+..+. .+++|||+||+|+. |.+.+|..++...|| .|+|++++.. .. .....+|+++|+..+|+
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~-c~f~~k~~~a~~aGA-~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGT-CNFTVKVLNAQNAGA-IAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCC-CCHHHHHHHHHHCCC-eEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 45679888774 46999999999999 999999999999999 9999987765 11 12346999999999999
Q ss_pred HHHHHHhcCC
Q 047470 462 SIRQYVTGKN 471 (757)
Q Consensus 462 ~l~~~~~~~~ 471 (757)
.|++|++.+.
T Consensus 103 ~l~~~l~~g~ 112 (118)
T cd04818 103 ALKAALAAGG 112 (118)
T ss_pred HHHHHHhcCC
Confidence 9999999765
No 56
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.43 E-value=3.2e-06 Score=77.79 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=69.2
Q ss_pred eeeEEccC--CCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--C---CCCCccccE
Q 047470 380 APLYYGKN--DVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--I---DSDEYYIPS 452 (757)
Q Consensus 380 ~p~~~~~~--~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--~---~~~~~~~p~ 452 (757)
+|++-..- ....+.|.+...+..+++|||+|++||. |.|.+|..++..+|| .++|++|+.. . ..+...+|.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~-c~f~~K~~nA~~aGA-~aviiyn~~~~~~~~~~~~~~~~~~ 105 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGT-CTFATKAANAAAKGA-KYVLIYNNGSGPTDQVGSDADSIIA 105 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCC-CCHHHHHHHHHHcCC-cEEEEEECCCCcccccCCCCcceee
Confidence 56554432 3456789987666668999999999999 999999999999999 9999998775 1 122233555
Q ss_pred EEechhhHHHHHHHHhcCC
Q 047470 453 LILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 453 ~~i~~~~g~~l~~~~~~~~ 471 (757)
+.+ ..+|+.|++.+.++.
T Consensus 106 ~~~-~~~G~~l~~~l~~G~ 123 (129)
T cd02124 106 AVT-PEDGEAWIDALAAGS 123 (129)
T ss_pred EEe-HHHHHHHHHHHhcCC
Confidence 555 999999999998765
No 57
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.41 E-value=1.3e-06 Score=80.87 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=60.8
Q ss_pred CCCCCCccceEEEEeCCCCCc-----hhHHHHHHHHcCCeEEEEeccCC--C-----CCCC---CccccEEEechhhHHH
Q 047470 398 SLNPDEVTGKVVFCDNSNRID-----TYSQMEEVDRAGAYAAIFLTDTP--D-----IDSD---EYYIPSLILPTSAGTS 462 (757)
Q Consensus 398 ~~~~~~~~gkivl~~~g~~~~-----~~~k~~~~~~~Ga~~g~i~~~~~--~-----~~~~---~~~~p~~~i~~~~g~~ 462 (757)
++.+.+++|||+|++||. |. |.+|..++..+|| +|+|++|+. . ...+ ...||+++|++.+|+.
T Consensus 49 d~~~~d~~GkIaLI~RG~-c~~~~~~f~~Kv~~A~~aGA-~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~ 126 (139)
T cd04817 49 SYICGGMAGKICLIERGG-NSKSVYPEIDKVKACQNAGA-IAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred cccCCCcCccEEEEECCC-CCCCcccHHHHHHHHHHCCC-eEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence 455668999999999999 99 9999999999999 999999998 3 1222 3479999999999999
Q ss_pred HHHHHhcC
Q 047470 463 IRQYVTGK 470 (757)
Q Consensus 463 l~~~~~~~ 470 (757)
|+..+.+.
T Consensus 127 L~~~l~~~ 134 (139)
T cd04817 127 LLAALGQS 134 (139)
T ss_pred HHHHhcCC
Confidence 99988654
No 58
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.38 E-value=1.6e-06 Score=79.95 Aligned_cols=79 Identities=19% Similarity=0.359 Sum_probs=67.4
Q ss_pred cccccCCC--CCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-----CC-----CCCccccEEEechh
Q 047470 391 KSICHLGS--LNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-----ID-----SDEYYIPSLILPTS 458 (757)
Q Consensus 391 ~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-----~~-----~~~~~~p~~~i~~~ 458 (757)
...|.++. +...+++|||+||+|+. |.+.+|..++...|| +|+|++++.. .. .....+|++.|+..
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~-~~~~~k~~~a~~~GA-~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGG-CSFSEKVKNAQKAGA-KAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCC-cCHHHHHHHHHHCCC-EEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 34598877 77889999999999999 999999999999999 9999988764 11 13457999999999
Q ss_pred hHHHHHHHHhcCC
Q 047470 459 AGTSIRQYVTGKN 471 (757)
Q Consensus 459 ~g~~l~~~~~~~~ 471 (757)
+|+.|++|+.++.
T Consensus 108 ~g~~l~~~~~~~~ 120 (126)
T cd00538 108 DGEALLSLLEAGK 120 (126)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998755
No 59
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.35 E-value=1.8e-06 Score=77.98 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=64.3
Q ss_pred CcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC------CC----CCCccccEEEechhh
Q 047470 390 NKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD------ID----SDEYYIPSLILPTSA 459 (757)
Q Consensus 390 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~------~~----~~~~~~p~~~i~~~~ 459 (757)
..+.|.+. +.++++|||+|++||. |.|.+|..+++..|| .++|++|+.. +. .....+|+++|+..+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~-CsF~~K~~nAq~aGA-~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~ 101 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGG-CGFLDKVMWAQRRGA-KAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTS 101 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHH
Confidence 35789766 5688999999999999 999999999999999 9999998664 11 123468999999999
Q ss_pred HHHHHHHHhcC
Q 047470 460 GTSIRQYVTGK 470 (757)
Q Consensus 460 g~~l~~~~~~~ 470 (757)
+++|+.++...
T Consensus 102 g~~L~~l~~~~ 112 (117)
T cd04813 102 YHLLSSLLPKS 112 (117)
T ss_pred HHHHHHhcccc
Confidence 99999887653
No 60
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.8e-06 Score=98.97 Aligned_cols=92 Identities=20% Similarity=0.424 Sum_probs=56.6
Q ss_pred eeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCC-cEEEeCCCCCC-----CCCccCHHHHHHHHHHhCCcEEE
Q 047470 249 RGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGV-DIMSLSLGFDQ-----TPYFNDVIAIASLSAIENGIVVV 322 (757)
Q Consensus 249 ~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV 322 (757)
.-+||+|+|..|-.-. .....+..|+++-..+=+ -+|-.||+... ++.+-+.++...+.|..+|+.++
T Consensus 289 ~A~AP~A~I~lvvap~------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 289 HAMAPKANIDLVVAPN------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hccCccCceEEEEcCC------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 5799999999886522 112222223222222111 33445666543 12234556666667889999999
Q ss_pred EecCCCC-CCC--------CcccCCCceEEecc
Q 047470 323 CAAGNDG-FPR--------SIHNGAPWITTVGA 346 (757)
Q Consensus 323 ~AAGN~g-~~~--------~~~~~ap~~itVga 346 (757)
+|+|.+| ... ..++.+|++++||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999998 332 23467899999997
No 61
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.33 E-value=4.6e-06 Score=76.56 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=64.3
Q ss_pred cccccCCCCC--CC----CccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--CC-------------CCCcc
Q 047470 391 KSICHLGSLN--PD----EVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--ID-------------SDEYY 449 (757)
Q Consensus 391 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--~~-------------~~~~~ 449 (757)
.+.|.+.... +. ...++|+|++||. |.|.+|..+++.+|| .++|++|+.. +. .+...
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~-C~F~~K~~~Aq~aGA-~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGG-CFFTLKAWNAQQAGA-AAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCC-cCHHHHHHHHHHCCC-cEEEEEECCCCccccccCcccccccccCCCce
Confidence 4679865542 22 3788999999999 999999999999999 9999999865 11 01235
Q ss_pred ccEEEechhhHHHHHHHHhcCC
Q 047470 450 IPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
||+++|+..+|+.|++.+.++.
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~ 121 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGE 121 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCC
Confidence 8999999999999999998876
No 62
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.32 E-value=2.9e-06 Score=79.43 Aligned_cols=85 Identities=13% Similarity=0.353 Sum_probs=68.7
Q ss_pred eeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----CC-C-C----Cc
Q 047470 379 DAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----ID-S-D----EY 448 (757)
Q Consensus 379 ~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~~-~-~----~~ 448 (757)
..+++... ..+.|.+.. .+++|||+|++||. |.|.+|..+++.+|| .++|++|+.. +. . . ..
T Consensus 39 ~~~lv~~~---~~~gC~~~~---~~~~g~IvLV~RG~-C~F~~K~~nA~~aGA-~avIv~n~~~~~~~~~~~~~~~~~~~ 110 (139)
T cd02132 39 KTRAVLAN---PLDCCSPST---SKLSGSIALVERGE-CAFTEKAKIAEAGGA-SALLIINDQEELYKMVCEDNDTSLNI 110 (139)
T ss_pred EEEEEECC---cccccCCCC---cccCCeEEEEECCC-CCHHHHHHHHHHcCC-cEEEEEECCCcccccccCCCCCCCCC
Confidence 44554443 257798754 47999999999999 999999999999999 9999998765 11 1 1 34
Q ss_pred cccEEEechhhHHHHHHHHhcCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
.||+++|+..+|+.|++++.++.
T Consensus 111 ~IP~v~Is~~~G~~L~~~l~~g~ 133 (139)
T cd02132 111 SIPVVMIPQSAGDALNKSLDQGK 133 (139)
T ss_pred cEeEEEecHHHHHHHHHHHHcCC
Confidence 79999999999999999998876
No 63
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.30 E-value=3e-06 Score=77.92 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=64.9
Q ss_pred cccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--------C---CC-----CCccccEEE
Q 047470 391 KSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--------I---DS-----DEYYIPSLI 454 (757)
Q Consensus 391 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--------~---~~-----~~~~~p~~~ 454 (757)
.+.|.+... +.+++|||+|++||. |.|.+|..+++.+|| .++|++|+.. + .. +...||+++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~-C~f~~K~~~Aq~aGA-~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~ 103 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGD-CMFVEKARRVQKAGA-IGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF 103 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCC-CcHHHHHHHHHHCCC-cEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence 467986554 567999999999999 999999999999999 9999997543 0 11 234689999
Q ss_pred echhhHHHHHHHHhcCC
Q 047470 455 LPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 455 i~~~~g~~l~~~~~~~~ 471 (757)
|+..+|+.|+++++.+.
T Consensus 104 I~~~dG~~L~~~l~~~~ 120 (126)
T cd02126 104 LFSKEGSKLLAAIKEHQ 120 (126)
T ss_pred EEHHHHHHHHHHHHhCC
Confidence 99999999999998765
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.26 E-value=3.9e-06 Score=79.86 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=67.4
Q ss_pred cccccCCCCCC---CCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-----CCCC-----CccccEEEech
Q 047470 391 KSICHLGSLNP---DEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-----IDSD-----EYYIPSLILPT 457 (757)
Q Consensus 391 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-----~~~~-----~~~~p~~~i~~ 457 (757)
.+.|.+....+ .++.|||+|++||. |.|.+|..+++.+|| .++|++|+.. +..+ ...||+++|+.
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~-CtF~~Kv~nAq~aGA-~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~ 127 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGN-CSFETKVRNAQRAGY-KAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK 127 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCC-CCHHHHHHHHHHCCC-CEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence 56898766644 88999999999999 999999999999999 9999999864 2221 34799999999
Q ss_pred hhHHHHHHHHhcCC
Q 047470 458 SAGTSIRQYVTGKN 471 (757)
Q Consensus 458 ~~g~~l~~~~~~~~ 471 (757)
.+|+.|+.++...+
T Consensus 128 ~dg~~L~~~l~~~~ 141 (153)
T cd02123 128 STGEILKKYASYEK 141 (153)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998765
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.01 E-value=7.2e-05 Score=68.98 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=69.0
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCC--chhHHHHHHHHcCCeEEEEeccCCC--CC---------
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRI--DTYSQMEEVDRAGAYAAIFLTDTPD--ID--------- 444 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~--~~~~k~~~~~~~Ga~~g~i~~~~~~--~~--------- 444 (757)
.+.+++|.+. +.+.++...+++|||++++++. | .+.+|..++...|| +|+|++|+.. ..
T Consensus 23 ~~~~lV~~g~------G~~~d~~~~~v~GkIvlv~~g~-~~~~~~~k~~~A~~~GA-~avi~~~~~~g~~~~~~~~~~~~ 94 (127)
T cd04819 23 AKGEPVDAGY------GLPKDFDGLDLEGKIAVVKRDD-PDVDRKEKYAKAVAAGA-AAFVVVNTVPGVLPATGDEGTED 94 (127)
T ss_pred eeEEEEEeCC------CCHHHcCCCCCCCeEEEEEcCC-CchhHHHHHHHHHHCCC-EEEEEEeCCCCcCcccccccccC
Confidence 5778888664 3333444667999999999999 8 88999999999999 9999998765 11
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCC
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
.....+|++.|+.+||+.|...++.+.
T Consensus 95 ~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 95 GPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 112469999999999999999998754
No 66
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.00 E-value=0.0027 Score=61.56 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=64.7
Q ss_pred ceeeeEEccCCCCcccccCCCC-----CCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----C-----
Q 047470 378 TDAPLYYGKNDVNKSICHLGSL-----NPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----I----- 443 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~-----~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~----- 443 (757)
.+.+++|.+. |...++ ...+++|||+|+++|. |.+.+|..+|...|| +|+|++++.. .
T Consensus 29 v~g~lVyvn~------G~~~Df~~L~~~gv~v~GkIvLvr~G~-~~~~~Kv~~A~~~GA-~gvIiy~Dp~d~~~~~~~~~ 100 (183)
T cd02128 29 VTGKLVYANY------GRKKDFEDLQSVGVSVNGSVVLVRAGK-ISFAEKVANAEKLGA-VGVLIYPDPADFPIDPSETA 100 (183)
T ss_pred eEEEEEEcCC------CCHHHHHHHHhcCCCCCCeEEEEECCC-CCHHHHHHHHHHCCC-EEEEEecCHHHcCcccCcce
Confidence 4677888643 332222 2567999999999999 999999999999999 9999998841 0
Q ss_pred ------------------------C-C----CCccccEEEechhhHHHHHHHHhcC
Q 047470 444 ------------------------D-S----DEYYIPSLILPTSAGTSIRQYVTGK 470 (757)
Q Consensus 444 ------------------------~-~----~~~~~p~~~i~~~~g~~l~~~~~~~ 470 (757)
. . ..-.||++-|+..+++.|+..+.-.
T Consensus 101 ~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 101 LFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred eecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0 0 0124889999999999999988643
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.92 E-value=0.0032 Score=58.59 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=58.0
Q ss_pred CCCCCccceEEEEeCCCCC------chhHH-------HHHHHHcCCeEEEEeccCCC---------CC---CCCccccEE
Q 047470 399 LNPDEVTGKVVFCDNSNRI------DTYSQ-------MEEVDRAGAYAAIFLTDTPD---------ID---SDEYYIPSL 453 (757)
Q Consensus 399 ~~~~~~~gkivl~~~g~~~------~~~~k-------~~~~~~~Ga~~g~i~~~~~~---------~~---~~~~~~p~~ 453 (757)
+...+++|||++++++. | .+..| ...+...|| +++|++|... .. .....||++
T Consensus 33 ~~~~~v~GKIvlv~~~~-~~~~~~~~~~~k~~~r~~~~~~A~~~GA-~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v 110 (134)
T cd04815 33 APAGAVKGKIVFFNQPM-VRTQTGSGYGPTVAYRRRGAVEAAKKGA-VAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAA 110 (134)
T ss_pred cchhhcCCeEEEecCCc-cccCchhhcCchhhhhhHHHHHHHhCCC-EEEEEEecCcccCCCCcCCccccCCCCCCCCEE
Confidence 34668999999999998 9 88888 688999999 9999998531 11 112459999
Q ss_pred EechhhHHHHHHHHhcCC
Q 047470 454 ILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~ 471 (757)
.|+.+++..|...++.+.
T Consensus 111 ~is~ed~~~L~r~l~~g~ 128 (134)
T cd04815 111 AISVEDADMLERLAARGK 128 (134)
T ss_pred EechhcHHHHHHHHhCCC
Confidence 999999999999998765
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.79 E-value=0.0032 Score=58.65 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=54.3
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCC------------------chhHHHHHHHHcCCeEEEEecc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRI------------------DTYSQMEEVDRAGAYAAIFLTD 439 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~------------------~~~~k~~~~~~~Ga~~g~i~~~ 439 (757)
...|+||.+.......|...++...|++||||++.++. | .+..|..++...|| +|+|+++
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~-P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA-~gvIii~ 97 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRND-PQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGA-AGVLIVH 97 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCC-CCcccccccccccccccccCHHHHHHHHHHCCC-cEEEEEe
Confidence 57889998865556779888999999999999999887 6 47789999999999 9999999
Q ss_pred CCC
Q 047470 440 TPD 442 (757)
Q Consensus 440 ~~~ 442 (757)
+..
T Consensus 98 ~~~ 100 (142)
T cd04814 98 ELA 100 (142)
T ss_pred CCC
Confidence 854
No 69
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.64 E-value=0.0051 Score=56.96 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCc------------hhHHHHHHHHcCCeEEEEeccCC
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID------------TYSQMEEVDRAGAYAAIFLTDTP 441 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~------------~~~k~~~~~~~Ga~~g~i~~~~~ 441 (757)
...++||.+.......|...++...+++|||||+.++. |. +..|..++...|| +|+|++++.
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~-p~~~~~~~~~~~~~~~~K~~~A~~~GA-~aVIi~~d~ 95 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGG-PAGIPSEEGAHAHSSNEKARYAAKAGA-IGMITLTTP 95 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCC-CCccccccccccccHHHHHHHHHHCCC-eEEEEEeCC
Confidence 47788998876566788888888899999999999987 63 6689999999999 999999984
No 70
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.59 E-value=0.014 Score=55.08 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=65.4
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCC-----------------CCchhHHHHHHHHcCCeEEEEeccC
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSN-----------------RIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~-----------------~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
.+.|+||.+.......|...++...+++|||||+.++. .|.+..|..++...|| +|+|++++
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA-~aVIv~~d 98 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGA-AAVIVVNG 98 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCC-eEEEEEeC
Confidence 46788988876666778888888899999999998763 1567889999999999 99999998
Q ss_pred CC-CCCCCccc------cEEEechhhHHHHHHH
Q 047470 441 PD-IDSDEYYI------PSLILPTSAGTSIRQY 466 (757)
Q Consensus 441 ~~-~~~~~~~~------p~~~i~~~~g~~l~~~ 466 (757)
.. ........ ..++++....+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 99 PNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CcccCcccccccccCccceEEechHHHHHHhhh
Confidence 76 21111111 2566777776666654
No 71
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.55 E-value=0.066 Score=47.05 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=63.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEECCccEEEEEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTVSSPV 752 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~~v~~P~ 752 (757)
..+.+.+++|.|.....|++.........++++|..-.+. +|++.++.|+|.+.. ..+.+.+.|.++- .+..+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~-PG~~~~~~V~~~~~~-~~g~~~~~l~i~~-e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLA-PGESVELEVTFSPTK-PLGDYEGSLVITT-EGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEEC-CCCEEEEEEEEEeCC-CCceEEEEEEEEE-CCeEEEEEE
Confidence 6677889999999999999876543345567777665555 899999999999643 4567899999988 667899998
Q ss_pred EEEeC
Q 047470 753 VAIKT 757 (757)
Q Consensus 753 ~v~~~ 757 (757)
-+..+
T Consensus 98 ~a~~~ 102 (102)
T PF14874_consen 98 KAEVT 102 (102)
T ss_pred EEEEC
Confidence 87754
No 72
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.95 E-value=0.077 Score=57.81 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----------CCCCCccccEEEechhhHHHHHHHHhcC
Q 047470 401 PDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----------IDSDEYYIPSLILPTSAGTSIRQYVTGK 470 (757)
Q Consensus 401 ~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----------~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 470 (757)
...+.+|++++.||. |.|.+|...++++|| .++++.|+.. .......||+++|++++++.+..-..++
T Consensus 91 ~~kl~~~~~~v~RGn-C~Ft~Ka~~Aq~aGA-saLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGN-CSFTEKAKLAQAAGA-SALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CccccceeEEEeccc-ceeehhhhhhhhcCc-eEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 456899999999999 999999999999999 9999999954 1123467999999999999998755554
Q ss_pred C
Q 047470 471 N 471 (757)
Q Consensus 471 ~ 471 (757)
.
T Consensus 169 ~ 169 (541)
T KOG2442|consen 169 D 169 (541)
T ss_pred C
Confidence 4
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.14 E-value=0.085 Score=53.11 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=46.0
Q ss_pred ceeeeEEccCCCCcccccCCCCC-----CCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLN-----PDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~-----~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
...++||.+- |...+++ ..+++|||+|+++|. +.+.+|..+|...|| +|+|++++..
T Consensus 45 v~g~lVyvny------G~~~D~~~L~~~gvdv~GKIvLvr~G~-~~~~~Kv~~A~~~GA-~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY------GSPEDFEYLEDLGIDVKGKIVIARYGG-IFRGLKVKNAQLAGA-VGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC------CcHHHHHHHhhcCCCCCCeEEEEECCC-ccHHHHHHHHHHcCC-EEEEEEeCch
Confidence 4677888653 5544332 568999999999998 888899999999999 9999999843
No 74
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=93.53 E-value=0.11 Score=48.48 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=35.7
Q ss_pred CCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCC
Q 047470 402 DEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP 441 (757)
Q Consensus 402 ~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~ 441 (757)
-+++|||+|++.|. ..+-.|..+|...|| +|+|+|.+.
T Consensus 37 V~v~GkIvi~RyG~-~~RG~Kv~~A~~~GA-~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQ-APLLYKLSLLEEAGF-GGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccC-cchHHHHHHHHHCCC-eEEEEecCh
Confidence 67999999999999 889999999999999 999999884
No 75
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=93.09 E-value=0.91 Score=37.68 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=37.6
Q ss_pred CceEEEEEEEeecCCCc-eeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc
Q 047470 671 TTAKNFSRVVKNVGAED-SIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR 728 (757)
Q Consensus 671 ~~~~~~~rtvtnv~~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (757)
+...+++.+|+|-|... ...++++..|+|-.+...|..+.--++|++++++++|++..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 44789999999999764 56888999999998888887765445899999999999864
No 76
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.51 Score=50.37 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=62.0
Q ss_pred cccccCCCC---CCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--------CCCCCccccEEEechhh
Q 047470 391 KSICHLGSL---NPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--------IDSDEYYIPSLILPTSA 459 (757)
Q Consensus 391 ~~~c~~~~~---~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--------~~~~~~~~p~~~i~~~~ 459 (757)
.++|++... ........++++.||. |+|.+|+.+|+.+|. .++|++|+.. ...+...+++++++...
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~-CsFe~Kv~~AQ~aGf-kaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGG-CSFEDKVLNAQRAGF-KAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccC-CchHHHHhhcccccC-ceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 367875433 2445677899999999 999999999999999 9999999765 12345678999999999
Q ss_pred HHHHHHHHhcC
Q 047470 460 GTSIRQYVTGK 470 (757)
Q Consensus 460 g~~l~~~~~~~ 470 (757)
|+.|..|...+
T Consensus 140 ge~l~~~~~~~ 150 (348)
T KOG4628|consen 140 GELLSSYAGRT 150 (348)
T ss_pred HHHHHHhhccc
Confidence 99998875443
No 77
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.23 E-value=0.26 Score=45.56 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=69.2
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----------CCCC-
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----------IDSD- 446 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----------~~~~- 446 (757)
+..++|... ...+|.... +.-...+.+++++||+ |+|..|..++..+|| ..+|+.++.. +..|
T Consensus 64 e~~~lV~ad---Pp~aC~elr-N~~f~~d~vaL~eRGe-CSFl~Ktl~~e~aGa-~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 64 ENLELVLAD---PPHACEELR-NEIFAPDSVALMERGE-CSFLVKTLNGEKAGA-TAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred cCcceeecC---ChhHHHHHh-hcccCCCcEEEEecCC-ceeeehhhhhhhcCc-eEEEEecCCCCchhHHHHHHhcCcc
Confidence 345555543 366776322 3345778999999999 999999999999999 6666665543 2233
Q ss_pred ---CccccEEEechhhHHHHHHHHhcCCCCceEEEEeeee
Q 047470 447 ---EYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILT 483 (757)
Q Consensus 447 ---~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~ 483 (757)
...+|++++-..+|..++.-++.-. .+-+.|..+-.
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~-r~ha~i~IPVn 176 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYF-RDHAKIDIPVN 176 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhC-CccEEEecccc
Confidence 4579999999999887777776555 45555554443
No 78
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=90.11 E-value=1.3 Score=42.20 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=44.4
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCc-------------------hhHHHHHHHHcCCeEEEEec
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID-------------------TYSQMEEVDRAGAYAAIFLT 438 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~-------------------~~~k~~~~~~~Ga~~g~i~~ 438 (757)
...|+||.+-......-...++...|++||||++..+. .. ...|...+...|| +|+|++
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~-P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA-~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVND-PGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGA-AGALIV 99 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCC-CCcccccccccCcccccccccHHHHHHHHHHCCC-eEEEEE
Confidence 56788887753222223334677889999999998664 21 2248999999999 999998
Q ss_pred cCC
Q 047470 439 DTP 441 (757)
Q Consensus 439 ~~~ 441 (757)
.+.
T Consensus 100 ~~~ 102 (157)
T cd04821 100 HET 102 (157)
T ss_pred eCC
Confidence 763
No 79
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=89.03 E-value=11 Score=33.88 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=39.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR 728 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (757)
...++.+++|.+....+|++++..++|+++......+.+. +|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~-~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVP-PGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEEC-CCCEEEEEEEEEECH
Confidence 5678899999999999999999998899996655778886 799999999998875
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.30 E-value=9.4 Score=42.18 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=58.7
Q ss_pred CceEEEEEEEeecCCCc-eeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc-CCCceEEEEEEEEEC
Q 047470 671 TTAKNFSRVVKNVGAED-SIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR-ESPRVSYGYLKWIDQ 743 (757)
Q Consensus 671 ~~~~~~~rtvtnv~~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~~~ 743 (757)
+...++...+.|.|+.+ ..-++++..|.|-.+.|+|.++-.-+++++.++++|++.+. ...+-|+=.|+-+++
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 33778899999999875 45688999999999999998766667899999999999975 345667777777664
No 81
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=83.15 E-value=15 Score=33.43 Aligned_cols=79 Identities=8% Similarity=0.172 Sum_probs=54.4
Q ss_pred CeEEeeecCCCceEEEEEEEeecCCCceeEEEEEeC----CCC--------------------cEEEEecCeEEEeccce
Q 047470 661 PSFAAVFTNETTAKNFSRVVKNVGAEDSIYRAVLEF----PAG--------------------MNIRIEPSTLKFTQKYQ 716 (757)
Q Consensus 661 ps~~~~~~~~~~~~~~~rtvtnv~~~~~ty~~~v~~----p~g--------------------~~v~v~p~~~~~~~~~~ 716 (757)
..|-+.... +...++..+|+|.++.+.+|.+.+.. ..| --+++ |..++++ +++
T Consensus 17 ~YFdL~~~P-~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~-~~~ 93 (121)
T PF06030_consen 17 SYFDLKVKP-GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLP-PNE 93 (121)
T ss_pred CeEEEEeCC-CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEEC-CCC
Confidence 345544443 33789999999999999999987542 111 01222 4447776 899
Q ss_pred eEEEEEEEEEccC-CCceEEEEEEEEE
Q 047470 717 LLDFALSVEIDRE-SPRVSYGYLKWID 742 (757)
Q Consensus 717 ~~~~~vt~~~~~~-~~~~~~G~~~~~~ 742 (757)
+++++++++.+.. -.+.+-|-|.++.
T Consensus 94 sk~V~~~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 94 SKTVTFTIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred EEEEEEEEEcCCCCcCCEEEeeEEEEe
Confidence 9999999988753 4777888888764
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.36 E-value=1.3 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=22.3
Q ss_pred CCCCCccEEEEEecCCccCCcccc
Q 047470 137 ARYGQGVIIGIIDTGIWPESESFH 160 (757)
Q Consensus 137 ~~~G~Gv~VgVIDtGid~~Hp~f~ 160 (757)
.+.|+||+|||+|||+|+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999999887
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=74.57 E-value=42 Score=30.19 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=48.2
Q ss_pred eEEEEEEEeecCCCceeEEEEEeC---CCC----cEEEEecCeEEEeccceeEEEEEEEEEcc-CCCceEEEEEEEEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEF---PAG----MNIRIEPSTLKFTQKYQLLDFALSVEIDR-ESPRVSYGYLKWID 742 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~---p~g----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~~ 742 (757)
..+.+.+|+|-|+....+.+.+.. ..+ -.+.++|..+.+. +|+++.+.| +.... +.+.-..=+|.++.
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~-pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLE-PGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEE-TTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeC-CCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 347788999999987777777764 111 2678999999998 899999999 66544 34444455666664
No 84
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=72.93 E-value=29 Score=32.25 Aligned_cols=69 Identities=9% Similarity=0.153 Sum_probs=52.8
Q ss_pred eEEEEEEEeecCCCc-eeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEE
Q 047470 673 AKNFSRVVKNVGAED-SIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWID 742 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~ 742 (757)
...+...+-|..+.. ...++....-.+.++.-.|..+++. +++.++++.++...+...+.+||.|++..
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~-P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLA-PHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeC-CCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 445555666766542 3445566666778888889999987 79999999999998888999999999864
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=67.84 E-value=84 Score=35.07 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=50.9
Q ss_pred eEEEEEEEeecCCCceeEEEEEe-CCCCcEEEEecCe-----EEEeccceeEEEEEEEEEcc-CCCceEEEEEEEEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLE-FPAGMNIRIEPST-----LKFTQKYQLLDFALSVEIDR-ESPRVSYGYLKWID 742 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~-~p~g~~v~v~p~~-----~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~~ 742 (757)
+..|+.++.|.|..+.+|..++. .|+|-...+.-.- +.+. +||++.|+|.+.++. ...+.|.=.|+-.+
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~-~gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLK-PGEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEec-CCCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 67899999999999999999999 7988776665433 4444 799999999998875 23444444444444
No 86
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=61.75 E-value=68 Score=27.92 Aligned_cols=53 Identities=9% Similarity=0.124 Sum_probs=39.7
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR 728 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (757)
......+|+|.++..-.|++....|... .|.|..-.+. ++++.++.|++.+..
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y--~v~P~~G~i~-p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRY--RVKPSYGIIE-PGESVEITITFQPFD 71 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTE--EEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceE--EecCCCEEEC-CCCEEEEEEEEEecc
Confidence 5677889999999999999998888765 5668876665 899999999998843
No 87
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=58.06 E-value=42 Score=37.73 Aligned_cols=55 Identities=7% Similarity=0.069 Sum_probs=46.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR 728 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (757)
....+..+.|.+..+.+|+++++..++.++...+..+++. +++..++.|++..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~-~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVK-AGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEEC-CCCEEEEEEEEEech
Confidence 5678889999999999999999999998888765577776 799999989888864
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=50.88 E-value=52 Score=27.31 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=32.0
Q ss_pred EEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEECCccEE
Q 047470 701 NIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTV 748 (757)
Q Consensus 701 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~~v 748 (757)
.+++.|..+++. .|+++.|++++.+... .- ...++|+++.....
T Consensus 4 ~i~i~p~~~~l~-~G~~~~l~a~~~~~~~--~~-~~~v~w~Ssn~~va 47 (81)
T smart00635 4 SVTVTPTTASVK-KGLTLQLTATVTPSSA--KV-TGKVTWTSSNPSVA 47 (81)
T ss_pred EEEEeCCeeEEe-CCCeEEEEEEEECCCC--Cc-cceEEEEECCCcEE
Confidence 578889888887 7999999999766432 22 78899998544433
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=43.56 E-value=77 Score=23.10 Aligned_cols=43 Identities=7% Similarity=0.011 Sum_probs=24.8
Q ss_pred EEEeecCCCceeEEEEEeCCCC-cEEEEecCeEEEeccceeEEEEEEE
Q 047470 678 RVVKNVGAEDSIYRAVLEFPAG-MNIRIEPSTLKFTQKYQLLDFALSV 724 (757)
Q Consensus 678 rtvtnv~~~~~ty~~~v~~p~g-~~v~v~p~~~~~~~~~~~~~~~vt~ 724 (757)
.+++|.|+.....+ .+...-| ..+..+. -.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~~~~~~--~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTTAEYSK--KPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEEeeCCc--ceE-CCCCEEEEEEEC
Confidence 57889998764332 3333344 3333322 233 379999888874
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=43.49 E-value=1.9e+02 Score=25.26 Aligned_cols=55 Identities=11% Similarity=0.144 Sum_probs=36.4
Q ss_pred ceEEEEEEEeecCCCc-eeEEE-----EEeCCCCcE---EEEecCeEEEeccceeEEEEEEEEEcc
Q 047470 672 TAKNFSRVVKNVGAED-SIYRA-----VLEFPAGMN---IRIEPSTLKFTQKYQLLDFALSVEIDR 728 (757)
Q Consensus 672 ~~~~~~rtvtnv~~~~-~ty~~-----~v~~p~g~~---v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (757)
...++..+++|..+.. .+-++ ++..+ |+. .......+++. ++++.++++++.+..
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l~-p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTLK-PGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceeeC-CCCEEEEEEEEEcee
Confidence 4789999999999887 55333 33444 663 45555556666 799999999998865
No 91
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=43.20 E-value=2e+02 Score=24.17 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=31.7
Q ss_pred ceEEEEEEEeecCCCc-eeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEc
Q 047470 672 TAKNFSRVVKNVGAED-SIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEID 727 (757)
Q Consensus 672 ~~~~~~rtvtnv~~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~ 727 (757)
...+++.+|+|.|... ..+.+.+... |..+. ....-.+. +|++.++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~~-~~~i~~L~-~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSVS-TVTIPSLA-PGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEEE-EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Cceec-cEEECCcC-CCcEEEEEEEEEeC
Confidence 3789999999999874 5566665543 32221 11112444 78888888888885
No 92
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.83 E-value=1.5e+02 Score=28.93 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=42.8
Q ss_pred CceEEEEEEEeecCCCceeEEEEEeC---C-CCcEEEEecCeEEE--eccceeEEEEEEEEEccCCCceEEEEEEEE
Q 047470 671 TTAKNFSRVVKNVGAEDSIYRAVLEF---P-AGMNIRIEPSTLKF--TQKYQLLDFALSVEIDRESPRVSYGYLKWI 741 (757)
Q Consensus 671 ~~~~~~~rtvtnv~~~~~ty~~~v~~---p-~g~~v~v~p~~~~~--~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~ 741 (757)
+...+++.++.|+|+.. -|.+++.. | +++++.--..+.++ -++|+..+..+++.+.. .+.+.++..+.+
T Consensus 37 g~~v~V~~~iyN~G~~~-A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~-~G~f~~~~a~Vt 111 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSA-AYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK-SGYFNFTPAVVT 111 (181)
T ss_pred CcEEEEEEEEEECCCCe-EEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee-eEEEEccCEEEE
Confidence 33789999999999985 48888765 2 34443111111111 14788999999998864 455555543333
No 93
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=33.69 E-value=3e+02 Score=34.01 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=30.9
Q ss_pred EEEEEEeecC-CCceeEEEEEeC-----CCCcEEEEecCeEEEecccee-EEEEEEEEEcc
Q 047470 675 NFSRVVKNVG-AEDSIYRAVLEF-----PAGMNIRIEPSTLKFTQKYQL-LDFALSVEIDR 728 (757)
Q Consensus 675 ~~~rtvtnv~-~~~~ty~~~v~~-----p~g~~v~v~p~~~~~~~~~~~-~~~~vt~~~~~ 728 (757)
+++.+|+-.| +...+.+|.... -.|.+-.....+|+|. +||+ ++++|.+..+.
T Consensus 417 tV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF~-PGEt~KtItV~IIDDd 476 (928)
T TIGR00845 417 TVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVFK-PGETQKEFRIGIIDDD 476 (928)
T ss_pred EEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEEC-CCceEEEEEEEEccCC
Confidence 4556665555 434444454432 3455666667789998 5554 67777765543
No 94
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.70 E-value=51 Score=23.58 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcc
Q 047470 559 AALLKAIHRDWSPAAIRSAIMTTA 582 (757)
Q Consensus 559 aALl~~~~p~~s~~~ik~~L~~TA 582 (757)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999996654
No 95
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=29.33 E-value=24 Score=15.94 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.1
Q ss_pred cccCCC
Q 047470 495 SFSSRG 500 (757)
Q Consensus 495 ~fSs~G 500 (757)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 96
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=29.31 E-value=65 Score=28.38 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=6.0
Q ss_pred CCcccchhHHHH
Q 047470 1 MTRRITFPHLIL 12 (757)
Q Consensus 1 m~~~~~~~~~~~ 12 (757)
|++.+...+..+
T Consensus 1 ~~~~~~~~~~~i 12 (103)
T PRK14125 1 LKLKESKIHVSI 12 (103)
T ss_pred CchHHHHHHHHH
Confidence 455555444444
No 97
>PRK15019 CsdA-binding activator; Provisional
Probab=27.08 E-value=60 Score=30.61 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=27.9
Q ss_pred EeeccccchhhhHhHHHHHHHHhCCCCCHHHHHH
Q 047470 543 ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRS 576 (757)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 576 (757)
..+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444555 58999999999999999999999876
No 98
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=26.30 E-value=2.1e+02 Score=25.35 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=35.3
Q ss_pred eecc-CCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 047470 249 RGIA-PRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQ 299 (757)
Q Consensus 249 ~GvA-P~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 299 (757)
.+.. ++++|+.+- . +.||....++.-+++..+.|+++|-+|--...
T Consensus 31 ~~y~~~~~elvgf~--~---CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 31 ARYDDEDVELVGFF--T---CGGCPGRKLVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred ccCCCCCeEEEEEe--e---CCCCChhHHHHHHHHHHHCCCCEEEEcCCEec
Confidence 3444 467887763 3 66888999999999999999999999866543
No 99
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.59 E-value=67 Score=29.95 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=28.2
Q ss_pred EeeccccchhhhHhHHHHHHHHhCCCCCHHHHHH
Q 047470 543 ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRS 576 (757)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 576 (757)
..+.|.| =|+.|-|++|||.+.+-..+|++|.+
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4455666 58999999999999999999999874
No 100
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=23.03 E-value=7e+02 Score=24.51 Aligned_cols=82 Identities=15% Similarity=0.283 Sum_probs=52.7
Q ss_pred CCCCeEEeeecCCCceEEEEEEEeecCCCceeEEEEEeCC--CC-cEEEEecCeEEEeccceeEEEEEEEEEcc---CCC
Q 047470 658 LNYPSFAAVFTNETTAKNFSRVVKNVGAEDSIYRAVLEFP--AG-MNIRIEPSTLKFTQKYQLLDFALSVEIDR---ESP 731 (757)
Q Consensus 658 ln~ps~~~~~~~~~~~~~~~rtvtnv~~~~~ty~~~v~~p--~g-~~v~v~p~~~~~~~~~~~~~~~vt~~~~~---~~~ 731 (757)
.-+|+|-+-..... ..+....+.+-. ....|+..+..| +| +.+++.++...+. .|++....|++.-+. ...
T Consensus 33 ~~~PTf~~YvP~~~-~~~~eF~L~d~~-~~~iy~~~~~l~~~~GIv~i~LP~~~~~Le-~gk~Y~W~~~l~Cd~~~~s~~ 109 (189)
T PF06051_consen 33 SEHPTFWFYVPYTS-AETVEFVLQDEQ-GNPIYQTTFPLPQQPGIVSITLPEDQPPLE-VGKTYRWYFSLICDPQDRSDD 109 (189)
T ss_pred CCCCEEEEEecCCC-CcceEEEEecCC-CCEEeEEEEecCCCCCEEEEECCCCCCCCC-CCCeEEEEEEEEECCCCCCCC
Confidence 45788877654322 344466677655 456898887765 34 5666654444444 688887777776532 346
Q ss_pred ceEEEEEEEEE
Q 047470 732 RVSYGYLKWID 742 (757)
Q Consensus 732 ~~~~G~~~~~~ 742 (757)
-+++|+|....
T Consensus 110 ~~v~G~I~Rv~ 120 (189)
T PF06051_consen 110 IFVEGWIQRVE 120 (189)
T ss_pred ceEEEEEEEeC
Confidence 78999998876
No 101
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.86 E-value=2e+02 Score=25.23 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=11.2
Q ss_pred EEEEEEEeecCCCc
Q 047470 674 KNFSRVVKNVGAED 687 (757)
Q Consensus 674 ~~~~rtvtnv~~~~ 687 (757)
.+++.+|+|.|+..
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 57788999999864
No 102
>PRK13203 ureB urease subunit beta; Reviewed
Probab=22.85 E-value=2e+02 Score=25.16 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=11.4
Q ss_pred eEEEEEEEeecCCCc
Q 047470 673 AKNFSRVVKNVGAED 687 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~ 687 (757)
..+++.+|+|.|+..
T Consensus 19 r~~~~l~V~NtGDRP 33 (102)
T PRK13203 19 RETVTLTVANTGDRP 33 (102)
T ss_pred CCEEEEEEEeCCCCc
Confidence 456788899999864
No 103
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.46 E-value=83 Score=29.33 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=27.9
Q ss_pred EeeccccchhhhHhHHHHHHHHhCCCCCHHHHHH
Q 047470 543 ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRS 576 (757)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 576 (757)
..+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444666 58999999999999999999999875
No 104
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=22.45 E-value=5.9e+02 Score=23.15 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=37.2
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEe-ccceeEEEEEEEEEccCCCceEEEEEEEEEC-CccEEEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFT-QKYQLLDFALSVEIDRESPRVSYGYLKWIDQ-YNHTVSS 750 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~-~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~-~~~~v~~ 750 (757)
..-+..+|+|.|+... ..|.|.-+ |... +.-|..+.++.+-+ .+.-..|.+.|+.+ .+.++++
T Consensus 50 qyyVpF~V~N~gg~TA-----------asV~V~ge-L~~~~~v~E~~e~tiDfl~---g~e~~~G~~IF~~dP~~g~L~i 114 (122)
T TIGR02588 50 QYYVPFAIHNLGGTTA-----------AAVNIRGE-LRQAGAVVENAEVTIDYLA---SGSKENGTLIFRSDPRNGQLRL 114 (122)
T ss_pred EEEEEEEEEeCCCcEE-----------EEEEEEEE-EccCCceeEEeeEEEEEcC---CCCeEeEEEEEccCcccCeEEE
Confidence 4678889999998743 22222221 1111 01133344444433 34667888888887 5676666
Q ss_pred EEEEE
Q 047470 751 PVVAI 755 (757)
Q Consensus 751 P~~v~ 755 (757)
=++=+
T Consensus 115 rv~gY 119 (122)
T TIGR02588 115 RVAGY 119 (122)
T ss_pred EEEec
Confidence 55433
No 105
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=22.45 E-value=62 Score=21.98 Aligned_cols=13 Identities=54% Similarity=0.813 Sum_probs=10.6
Q ss_pred chhhhHhHHHHHH
Q 047470 550 MAAPHVAGVAALL 562 (757)
Q Consensus 550 mAaP~VAG~aALl 562 (757)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998743
No 106
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=22.20 E-value=2.1e+02 Score=24.94 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=11.4
Q ss_pred eEEEEEEEeecCCCc
Q 047470 673 AKNFSRVVKNVGAED 687 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~ 687 (757)
..+++.+|+|.|+..
T Consensus 19 r~~~~l~V~NtGDRp 33 (101)
T cd00407 19 REAVTLKVKNTGDRP 33 (101)
T ss_pred CCEEEEEEEeCCCcc
Confidence 457788899999864
No 107
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=80 Score=29.53 Aligned_cols=33 Identities=33% Similarity=0.266 Sum_probs=26.3
Q ss_pred EeeccccchhhhHhHHHHHHHHhCCCCCHHHHHH
Q 047470 543 ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRS 576 (757)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~ 576 (757)
..+.|=|= |++|.|.+|++++.+-..||++|..
T Consensus 72 ~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 34444443 6899999999999999999999853
No 108
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.69 E-value=9.9e+02 Score=26.13 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=38.3
Q ss_pred CceEEEEEEEeecCCCceeE---E-EEEe--C----------CCC----cEEEEecCeEEEeccceeEEEEEEEEEcc--
Q 047470 671 TTAKNFSRVVKNVGAEDSIY---R-AVLE--F----------PAG----MNIRIEPSTLKFTQKYQLLDFALSVEIDR-- 728 (757)
Q Consensus 671 ~~~~~~~rtvtnv~~~~~ty---~-~~v~--~----------p~g----~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-- 728 (757)
+.+.+++.+|||.|+..... . +.+. . |+. --++|+|+.- . .+||+++++|+++-..
T Consensus 262 gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~p-I-~PGETrtl~V~a~dA~We 339 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSP-I-APGETRTLTVEAQDAAWE 339 (381)
T ss_dssp SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B--TT-EEEEEEEEE-HHHH
T ss_pred CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCC-c-CCCceEEEEEEeehhHHH
Confidence 44789999999999875221 1 1111 1 211 1244555532 1 4799999999886532
Q ss_pred ---------CCCceEEEEEEEEECCccEEEEEE
Q 047470 729 ---------ESPRVSYGYLKWIDQYNHTVSSPV 752 (757)
Q Consensus 729 ---------~~~~~~~G~~~~~~~~~~~v~~P~ 752 (757)
.++...-|=|-|.|..+++.-+.|
T Consensus 340 veRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I 372 (381)
T PF04744_consen 340 VERLSDLIYDPDSRFGGLLFFFDASGNRYISEI 372 (381)
T ss_dssp HTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEE
T ss_pred HhhhhhhhcCcccceeEEEEEEcCCCCEEEEec
Confidence 123334444455565455544444
No 109
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.60 E-value=2.4e+02 Score=31.56 Aligned_cols=72 Identities=22% Similarity=0.406 Sum_probs=53.3
Q ss_pred ccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCC-CcEEEeCCCCCC----CCCccCHHHHHHHHHHhCCcEEEEe
Q 047470 251 IAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADG-VDIMSLSLGFDQ----TPYFNDVIAIASLSAIENGIVVVCA 324 (757)
Q Consensus 251 vAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g-~dVIn~SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~A 324 (757)
=.|.++++.|-+.- .| .....|++||+.|-+.+ +|||=+.=|+.. ..+.++.+.. ...+..++||.|
T Consensus 159 R~P~~~viv~pt~V----QG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaR---Ai~~s~iPvISA 231 (440)
T COG1570 159 RFPSVEVIVYPTLV----QGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVAR---AIAASRIPVISA 231 (440)
T ss_pred hCCCCeEEEEeccc----cCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHH---HHHhCCCCeEee
Confidence 35889999887754 34 67889999999998887 999999999876 2233334442 334678999999
Q ss_pred cCCCC
Q 047470 325 AGNDG 329 (757)
Q Consensus 325 AGN~g 329 (757)
-|-+-
T Consensus 232 VGHEt 236 (440)
T COG1570 232 VGHET 236 (440)
T ss_pred cccCC
Confidence 98765
No 110
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=21.15 E-value=95 Score=28.36 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=27.1
Q ss_pred EeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHH
Q 047470 543 ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSA 577 (757)
Q Consensus 543 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~ 577 (757)
..+.|.|= |+.|-|++||+.+.+-..+|++|.+.
T Consensus 58 ~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 58 VHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 35556665 67999999999999999999998753
No 111
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.01 E-value=86 Score=24.06 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=22.9
Q ss_pred eEeeccccchhhhHhHHHH------HHHHhCCCCCHHHHHHHHH
Q 047470 542 YALFSGTSMAAPHVAGVAA------LLKAIHRDWSPAAIRSAIM 579 (757)
Q Consensus 542 y~~~sGTSmAaP~VAG~aA------Ll~~~~p~~s~~~ik~~L~ 579 (757)
--.+.||=+..=.|....+ -+.+.||.+++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3455677666555555432 3567799999999999884
No 112
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.76 E-value=2.8e+02 Score=29.58 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=49.1
Q ss_pred cCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCC----CcEEEeCCCCCC----CCCccCHHHHHHHHHHhCCcEEE
Q 047470 252 APRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADG----VDIMSLSLGFDQ----TPYFNDVIAIASLSAIENGIVVV 322 (757)
Q Consensus 252 AP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g----~dVIn~SlG~~~----~~~~~~~~~~a~~~a~~~Gi~vV 322 (757)
.|.+++..|.+.- .| ....+|+.||+.+.+.+ +|||-+-=|++. ..+.+..+.. ...+..++|+
T Consensus 39 ~~~~~~~~~p~~v----QG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~var---ai~~~~~Pvi 111 (319)
T PF02601_consen 39 NPIVEIILYPASV----QGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVAR---AIAASPIPVI 111 (319)
T ss_pred CCCcEEEEEeccc----cccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHH---HHHhCCCCEE
Confidence 4666666665442 34 67888999999998765 899999999886 2222233332 3346779999
Q ss_pred EecCCCC
Q 047470 323 CAAGNDG 329 (757)
Q Consensus 323 ~AAGN~g 329 (757)
.+-|=+-
T Consensus 112 saIGHe~ 118 (319)
T PF02601_consen 112 SAIGHET 118 (319)
T ss_pred EecCCCC
Confidence 9999765
No 113
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=20.24 E-value=2.6e+02 Score=24.34 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=10.8
Q ss_pred eEEEEEEEeecCCCc
Q 047470 673 AKNFSRVVKNVGAED 687 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~ 687 (757)
..+++.+|+|.|+..
T Consensus 18 r~~~~l~V~N~GDRP 32 (100)
T PF00699_consen 18 RERITLEVTNTGDRP 32 (100)
T ss_dssp SEEEEEEEEE-SSS-
T ss_pred CcEEEEEEEeCCCcc
Confidence 567889999999874
No 114
>PLN03080 Probable beta-xylosidase; Provisional
Probab=20.09 E-value=2.1e+02 Score=35.02 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=42.9
Q ss_pred eEEEEEEEeecCCCceeEEEE--EeCCCCc-----EEEEecCeEEEeccceeEEEEEEEEE-cc-----CCCceE--EEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAV--LEFPAGM-----NIRIEPSTLKFTQKYQLLDFALSVEI-DR-----ESPRVS--YGY 737 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~--v~~p~g~-----~v~v~p~~~~~~~~~~~~~~~vt~~~-~~-----~~~~~~--~G~ 737 (757)
..+|+.+|||.|+....-.+. +..|... +--+--.++.+ ++||+++++++++. .. ....|+ -|.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~ 763 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDPCKHLSVANEEGKRVLPLGD 763 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCchHHceEEcCCCcEEEeCcc
Confidence 478999999999876555444 3334221 00011122334 47999999999986 42 123342 343
Q ss_pred -EEEEECCccEEEEE
Q 047470 738 -LKWIDQYNHTVSSP 751 (757)
Q Consensus 738 -~~~~~~~~~~v~~P 751 (757)
-.+.+...|.|+++
T Consensus 764 y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 764 HVLMLGDLEHSLSIE 778 (779)
T ss_pred EEEEEeCCccceEEe
Confidence 23334356666654
Done!