Query 047471
Match_columns 579
No_of_seqs 591 out of 3234
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 11:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.3E-88 5.1E-93 721.3 66.6 571 3-576 153-761 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.1E-78 2.3E-83 632.0 60.1 511 66-577 85-599 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.6E-75 1.2E-79 618.7 59.5 532 4-540 88-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-66 2.8E-71 543.0 54.5 504 34-542 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.1E-65 2.4E-70 536.1 54.0 496 3-502 371-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7.4E-63 1.6E-67 513.4 47.3 432 3-438 124-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-33 3.7E-38 308.0 56.1 521 4-536 331-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.2E-33 1.8E-37 302.7 56.8 517 5-532 366-897 (899)
9 PRK11447 cellulose synthase su 100.0 4E-24 8.7E-29 234.2 54.3 518 5-534 31-665 (1157)
10 PRK11447 cellulose synthase su 100.0 1.1E-23 2.5E-28 230.7 55.3 511 8-534 118-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 3.4E-22 7.4E-27 209.0 49.6 419 107-536 189-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 4.2E-21 9.1E-26 201.0 50.4 509 14-537 56-674 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 2.8E-21 6.1E-26 179.9 34.2 441 71-524 51-508 (966)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-19 5.1E-24 184.9 41.4 251 280-535 307-571 (615)
15 KOG4626 O-linked N-acetylgluco 99.9 6E-20 1.3E-24 171.2 30.5 419 106-537 54-487 (966)
16 PRK11788 tetratricopeptide rep 99.9 5.5E-20 1.2E-24 180.2 29.0 295 244-543 43-355 (389)
17 KOG2002 TPR-containing nuclear 99.9 3.5E-18 7.6E-23 167.8 39.7 522 6-538 166-801 (1018)
18 TIGR00990 3a0801s09 mitochondr 99.9 4.3E-18 9.4E-23 175.5 39.8 229 269-505 333-575 (615)
19 PRK15174 Vi polysaccharide exp 99.9 9.4E-18 2E-22 172.3 39.5 350 147-506 17-386 (656)
20 PRK10049 pgaA outer membrane p 99.9 2.9E-17 6.3E-22 172.4 43.6 392 73-506 20-461 (765)
21 PRK10049 pgaA outer membrane p 99.8 1.2E-17 2.6E-22 175.3 38.1 394 102-537 17-458 (765)
22 PRK11788 tetratricopeptide rep 99.8 1.3E-18 2.7E-23 170.6 28.8 296 77-440 44-353 (389)
23 PRK14574 hmsH outer membrane p 99.8 1.8E-16 4E-21 163.0 44.8 442 43-508 40-520 (822)
24 PRK15174 Vi polysaccharide exp 99.8 3.9E-17 8.4E-22 167.8 37.6 353 176-537 15-383 (656)
25 KOG2002 TPR-containing nuclear 99.8 7.1E-16 1.5E-20 151.9 39.3 510 18-536 146-746 (1018)
26 PRK14574 hmsH outer membrane p 99.8 1.7E-14 3.7E-19 148.6 44.0 434 77-536 43-514 (822)
27 KOG2003 TPR repeat-containing 99.8 1.5E-16 3.3E-21 143.3 25.1 477 5-521 204-709 (840)
28 KOG0495 HAT repeat protein [RN 99.8 5.3E-13 1.1E-17 126.2 46.9 512 21-551 365-894 (913)
29 KOG2076 RNA polymerase III tra 99.8 1.1E-13 2.3E-18 135.9 43.8 350 9-362 146-550 (895)
30 KOG4422 Uncharacterized conser 99.7 7.1E-14 1.5E-18 125.5 36.4 432 6-466 120-587 (625)
31 KOG0495 HAT repeat protein [RN 99.7 5.6E-12 1.2E-16 119.4 46.7 536 15-572 264-877 (913)
32 KOG4422 Uncharacterized conser 99.7 6.6E-13 1.4E-17 119.4 36.5 237 160-400 201-464 (625)
33 KOG1915 Cell cycle control pro 99.7 2.4E-12 5.1E-17 117.4 40.0 477 50-534 86-624 (677)
34 PF13429 TPR_15: Tetratricopep 99.7 1.4E-16 3E-21 147.6 10.8 257 273-534 14-276 (280)
35 KOG2003 TPR repeat-containing 99.7 2.1E-13 4.5E-18 123.4 28.2 431 76-535 209-689 (840)
36 KOG0547 Translocase of outer m 99.7 9.5E-13 2.1E-17 120.4 31.7 213 315-533 338-564 (606)
37 KOG3785 Uncharacterized conser 99.7 1E-12 2.2E-17 115.4 30.7 449 9-509 29-497 (557)
38 KOG4318 Bicoid mRNA stability 99.7 1.1E-12 2.4E-17 128.3 33.2 498 23-539 11-598 (1088)
39 KOG2076 RNA polymerase III tra 99.6 7.3E-12 1.6E-16 123.3 39.0 516 2-518 173-786 (895)
40 PRK10747 putative protoheme IX 99.6 1.8E-12 3.9E-17 125.7 28.4 275 249-534 97-389 (398)
41 KOG1126 DNA-binding cell divis 99.5 6E-13 1.3E-17 126.7 20.1 278 251-537 334-622 (638)
42 PRK10747 putative protoheme IX 99.5 5.6E-12 1.2E-16 122.3 27.3 218 277-502 163-391 (398)
43 KOG1126 DNA-binding cell divis 99.5 6.1E-13 1.3E-17 126.7 19.6 250 281-536 333-587 (638)
44 KOG1155 Anaphase-promoting com 99.5 6.3E-11 1.4E-15 108.1 31.4 256 274-534 234-494 (559)
45 KOG1915 Cell cycle control pro 99.5 2.6E-11 5.5E-16 110.8 28.8 415 146-572 84-533 (677)
46 TIGR00540 hemY_coli hemY prote 99.5 1.3E-11 2.9E-16 120.4 28.5 279 247-533 95-397 (409)
47 PF13429 TPR_15: Tetratricopep 99.5 7E-14 1.5E-18 129.6 12.0 90 372-464 183-272 (280)
48 KOG0547 Translocase of outer m 99.5 1.4E-10 3.1E-15 106.5 32.5 219 277-503 336-568 (606)
49 TIGR00540 hemY_coli hemY prote 99.5 3.2E-11 7E-16 117.7 30.7 254 243-500 125-398 (409)
50 KOG1173 Anaphase-promoting com 99.5 9.4E-11 2E-15 109.7 31.1 495 5-516 19-533 (611)
51 KOG2047 mRNA splicing factor [ 99.5 5.3E-09 1.1E-13 99.6 42.7 514 1-522 101-710 (835)
52 KOG1155 Anaphase-promoting com 99.5 5.7E-10 1.2E-14 102.0 34.8 355 132-504 161-539 (559)
53 COG2956 Predicted N-acetylgluc 99.5 4E-11 8.6E-16 104.3 24.0 240 312-556 116-368 (389)
54 KOG1173 Anaphase-promoting com 99.5 5.5E-10 1.2E-14 104.7 32.4 259 270-535 247-518 (611)
55 COG2956 Predicted N-acetylgluc 99.4 2.8E-10 6.1E-15 99.2 26.7 288 177-500 46-346 (389)
56 TIGR02521 type_IV_pilW type IV 99.4 3.2E-11 6.9E-16 109.2 22.5 197 338-535 31-232 (234)
57 KOG4162 Predicted calmodulin-b 99.4 7.7E-09 1.7E-13 100.8 39.1 413 126-546 314-793 (799)
58 COG3071 HemY Uncharacterized e 99.4 5.1E-10 1.1E-14 100.7 28.2 277 249-534 97-389 (400)
59 KOG4318 Bicoid mRNA stability 99.4 2.4E-09 5.1E-14 105.6 34.9 202 4-216 27-286 (1088)
60 COG3071 HemY Uncharacterized e 99.4 9.5E-10 2.1E-14 99.0 27.4 292 74-432 88-389 (400)
61 KOG1174 Anaphase-promoting com 99.3 1.3E-08 2.9E-13 91.8 31.8 302 198-506 191-505 (564)
62 KOG2047 mRNA splicing factor [ 99.3 9E-08 1.9E-12 91.5 38.2 491 37-535 102-687 (835)
63 PF12569 NARP1: NMDA receptor- 99.3 3E-08 6.5E-13 97.3 33.9 410 76-531 12-516 (517)
64 KOG2376 Signal recognition par 99.3 3.2E-07 7E-12 87.0 38.9 447 5-466 15-517 (652)
65 KOG1129 TPR repeat-containing 99.3 2.2E-10 4.7E-15 99.9 16.8 225 307-536 227-459 (478)
66 TIGR02521 type_IV_pilW type IV 99.3 1.6E-09 3.5E-14 97.9 23.8 192 308-502 36-233 (234)
67 PRK12370 invasion protein regu 99.3 2.1E-09 4.5E-14 109.2 26.1 260 266-536 255-536 (553)
68 COG3063 PilF Tfp pilus assembl 99.3 5.6E-10 1.2E-14 92.9 17.7 162 372-537 38-204 (250)
69 KOG1840 Kinesin light chain [C 99.3 8.5E-10 1.8E-14 106.6 21.9 231 303-533 199-477 (508)
70 KOG1156 N-terminal acetyltrans 99.3 1.7E-07 3.7E-12 89.8 36.5 451 11-533 16-509 (700)
71 KOG2376 Signal recognition par 99.3 6.4E-08 1.4E-12 91.7 32.5 438 44-532 19-517 (652)
72 PF13041 PPR_2: PPR repeat fam 99.3 9.2E-12 2E-16 80.5 5.1 50 164-213 1-50 (50)
73 PF13041 PPR_2: PPR repeat fam 99.3 2E-11 4.3E-16 78.9 6.6 50 367-416 1-50 (50)
74 KOG1156 N-terminal acetyltrans 99.2 1.3E-07 2.8E-12 90.6 32.7 378 147-537 53-470 (700)
75 PRK11189 lipoprotein NlpI; Pro 99.2 2.7E-09 5.8E-14 99.1 20.9 233 276-516 35-281 (296)
76 KOG4162 Predicted calmodulin-b 99.2 1.3E-07 2.8E-12 92.5 32.6 442 33-508 319-790 (799)
77 PRK12370 invasion protein regu 99.2 2.8E-09 6.2E-14 108.3 22.8 211 317-535 275-502 (553)
78 KOG1129 TPR repeat-containing 99.2 8.8E-10 1.9E-14 96.2 15.5 232 271-508 227-465 (478)
79 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-08 2.9E-13 94.4 23.8 213 318-537 41-267 (296)
80 KOG0985 Vesicle coat protein c 99.1 1.4E-06 2.9E-11 87.8 36.9 459 6-519 842-1326(1666)
81 COG3063 PilF Tfp pilus assembl 99.1 3.5E-08 7.7E-13 82.4 21.7 195 309-506 41-241 (250)
82 KOG3616 Selective LIM binding 99.1 3.6E-07 7.9E-12 88.7 31.6 168 10-192 498-674 (1636)
83 PF12569 NARP1: NMDA receptor- 99.1 4.9E-08 1.1E-12 95.8 25.6 254 277-537 14-293 (517)
84 KOG1840 Kinesin light chain [C 99.1 7E-08 1.5E-12 93.6 25.8 236 237-500 200-478 (508)
85 KOG3785 Uncharacterized conser 99.1 2.6E-07 5.5E-12 82.0 26.6 457 44-557 29-509 (557)
86 KOG0548 Molecular co-chaperone 99.1 1.9E-07 4.2E-12 87.6 26.3 440 9-519 9-473 (539)
87 KOG4340 Uncharacterized conser 99.1 1.1E-07 2.4E-12 82.3 22.0 309 40-366 13-338 (459)
88 KOG3617 WD40 and TPR repeat-co 99.1 4.5E-06 9.7E-11 82.4 35.5 218 202-458 913-1189(1416)
89 KOG1174 Anaphase-promoting com 99.0 8.3E-07 1.8E-11 80.6 28.0 388 135-537 97-502 (564)
90 KOG0624 dsRNA-activated protei 99.0 4E-07 8.7E-12 80.5 25.4 311 139-509 42-378 (504)
91 KOG3616 Selective LIM binding 99.0 5.8E-06 1.3E-10 80.6 32.6 435 42-535 562-1024(1636)
92 KOG3617 WD40 and TPR repeat-co 99.0 1.4E-06 3.1E-11 85.8 28.7 160 14-193 812-994 (1416)
93 KOG1127 TPR repeat-containing 99.0 2.7E-06 5.8E-11 85.8 30.7 264 266-534 816-1103(1238)
94 PF04733 Coatomer_E: Coatomer 99.0 6.8E-08 1.5E-12 88.3 18.1 225 270-506 38-270 (290)
95 KOG0985 Vesicle coat protein c 98.9 8.8E-05 1.9E-09 75.3 40.4 237 266-531 983-1245(1666)
96 cd05804 StaR_like StaR_like; a 98.9 2.9E-06 6.4E-11 82.0 29.6 293 240-536 10-337 (355)
97 PF04733 Coatomer_E: Coatomer 98.9 2.1E-08 4.6E-13 91.6 13.6 245 275-535 9-265 (290)
98 KOG0548 Molecular co-chaperone 98.9 7.4E-07 1.6E-11 83.8 23.6 217 306-536 227-456 (539)
99 KOG1125 TPR repeat-containing 98.9 6.2E-08 1.3E-12 91.7 16.1 219 313-534 295-526 (579)
100 TIGR03302 OM_YfiO outer membra 98.9 2.2E-07 4.7E-12 83.9 18.0 181 337-536 32-233 (235)
101 PRK10370 formate-dependent nit 98.9 2.7E-07 5.8E-12 79.7 17.4 148 377-538 24-176 (198)
102 KOG4340 Uncharacterized conser 98.8 2.4E-06 5.2E-11 74.2 21.8 387 103-534 13-442 (459)
103 PRK04841 transcriptional regul 98.8 9.3E-06 2E-10 89.2 29.5 323 213-536 386-761 (903)
104 PRK15359 type III secretion sy 98.7 3.8E-07 8.1E-12 74.4 14.0 121 390-516 14-136 (144)
105 KOG1070 rRNA processing protei 98.7 1.4E-06 3E-11 90.8 20.6 200 335-538 1455-1666(1710)
106 KOG1127 TPR repeat-containing 98.7 3.9E-05 8.5E-10 77.8 29.7 174 18-194 474-658 (1238)
107 PLN02789 farnesyltranstransfer 98.7 9.5E-06 2.1E-10 75.4 23.8 178 353-533 87-300 (320)
108 PRK15359 type III secretion sy 98.7 3.9E-07 8.5E-12 74.3 13.1 108 425-537 14-123 (144)
109 KOG1914 mRNA cleavage and poly 98.7 0.0003 6.5E-09 66.8 33.9 396 34-432 17-500 (656)
110 cd05804 StaR_like StaR_like; a 98.7 3.5E-05 7.6E-10 74.6 29.0 267 268-536 7-294 (355)
111 KOG0624 dsRNA-activated protei 98.7 2.3E-05 5.1E-10 69.7 24.2 283 144-471 81-373 (504)
112 KOG1128 Uncharacterized conser 98.7 1.6E-06 3.5E-11 84.6 18.0 220 299-536 394-617 (777)
113 PRK04841 transcriptional regul 98.7 7.2E-05 1.6E-09 82.3 32.7 329 175-505 383-764 (903)
114 KOG2053 Mitochondrial inherita 98.6 0.00072 1.6E-08 68.3 35.1 132 78-212 19-155 (932)
115 COG5010 TadD Flp pilus assembl 98.6 6.6E-06 1.4E-10 70.7 18.2 153 375-530 72-226 (257)
116 KOG1128 Uncharacterized conser 98.6 6.7E-06 1.4E-10 80.4 20.2 189 333-536 393-583 (777)
117 PF12854 PPR_1: PPR repeat 98.6 4.4E-08 9.5E-13 56.5 3.3 34 31-64 1-34 (34)
118 COG5010 TadD Flp pilus assembl 98.6 2.7E-06 5.9E-11 73.0 15.4 171 401-575 63-244 (257)
119 KOG1125 TPR repeat-containing 98.6 4.2E-06 9.1E-11 79.7 17.6 244 276-524 294-560 (579)
120 KOG3081 Vesicle coat complex C 98.6 5.9E-05 1.3E-09 65.0 22.1 249 246-506 18-276 (299)
121 PRK10370 formate-dependent nit 98.6 7.8E-06 1.7E-10 70.6 17.4 155 345-510 23-182 (198)
122 COG4783 Putative Zn-dependent 98.5 2.2E-05 4.9E-10 73.5 20.1 117 414-532 316-434 (484)
123 PRK15363 pathogenicity island 98.5 1.1E-06 2.5E-11 70.1 10.1 97 439-535 34-132 (157)
124 TIGR02552 LcrH_SycD type III s 98.5 2.2E-06 4.9E-11 69.6 11.8 95 441-535 18-114 (135)
125 KOG1070 rRNA processing protei 98.5 2.8E-05 6.2E-10 81.5 21.8 218 303-523 1458-1688(1710)
126 PRK15179 Vi polysaccharide bio 98.5 1.9E-05 4.1E-10 81.1 20.5 139 368-510 85-226 (694)
127 PF12854 PPR_1: PPR repeat 98.5 2.6E-07 5.7E-12 53.3 4.0 32 435-466 2-33 (34)
128 TIGR03302 OM_YfiO outer membra 98.5 1.4E-05 3.1E-10 72.0 17.6 182 300-503 30-234 (235)
129 PRK15179 Vi polysaccharide bio 98.5 6.9E-05 1.5E-09 77.1 24.1 130 333-466 81-214 (694)
130 KOG2053 Mitochondrial inherita 98.5 0.0026 5.6E-08 64.5 39.6 500 14-533 21-606 (932)
131 PRK14720 transcript cleavage f 98.4 1.7E-05 3.7E-10 82.2 19.1 215 266-518 30-269 (906)
132 PRK14720 transcript cleavage f 98.4 5.2E-05 1.1E-09 78.7 22.1 216 234-483 29-268 (906)
133 PLN02789 farnesyltranstransfer 98.4 7.4E-05 1.6E-09 69.5 21.0 186 348-536 47-251 (320)
134 COG4783 Putative Zn-dependent 98.4 7.3E-05 1.6E-09 70.2 20.1 139 376-536 313-455 (484)
135 KOG3081 Vesicle coat complex C 98.4 0.0001 2.2E-09 63.5 19.3 241 275-532 16-268 (299)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 9.4E-06 2E-10 76.9 13.7 122 407-533 172-295 (395)
137 KOG3060 Uncharacterized conser 98.3 0.00021 4.6E-09 61.2 19.8 167 342-511 56-230 (289)
138 KOG3060 Uncharacterized conser 98.3 0.00011 2.3E-09 62.9 17.5 163 371-537 54-222 (289)
139 TIGR02552 LcrH_SycD type III s 98.3 2.3E-05 5E-10 63.6 13.6 114 391-508 5-121 (135)
140 PF07079 DUF1347: Protein of u 98.3 0.0034 7.5E-08 58.7 32.8 62 471-533 459-522 (549)
141 PF09976 TPR_21: Tetratricopep 98.2 4.6E-05 1E-09 62.5 13.2 114 417-531 24-143 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.2E-05 1.3E-09 71.4 15.4 126 341-469 172-297 (395)
143 PF09976 TPR_21: Tetratricopep 98.2 0.00017 3.8E-09 59.0 15.6 126 372-499 15-145 (145)
144 TIGR02795 tol_pal_ybgF tol-pal 98.1 3.4E-05 7.3E-10 61.0 10.7 92 444-535 6-105 (119)
145 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.7E-11 49.1 4.2 35 167-201 1-35 (35)
146 PF13414 TPR_11: TPR repeat; P 98.1 6.6E-06 1.4E-10 57.5 5.1 65 471-535 2-67 (69)
147 cd00189 TPR Tetratricopeptide 98.1 3.4E-05 7.3E-10 58.0 9.6 93 443-535 3-97 (100)
148 PF13812 PPR_3: Pentatricopept 98.1 5.9E-06 1.3E-10 48.2 4.0 33 167-199 2-34 (34)
149 KOG1914 mRNA cleavage and poly 98.1 0.013 2.7E-07 56.3 35.7 205 319-526 309-530 (656)
150 TIGR00756 PPR pentatricopeptid 98.1 8.1E-06 1.8E-10 47.9 4.4 33 371-403 2-34 (35)
151 PF13432 TPR_16: Tetratricopep 98.1 8.6E-06 1.9E-10 56.1 5.1 59 478-536 3-61 (65)
152 COG4235 Cytochrome c biogenesi 98.1 6.5E-05 1.4E-09 66.5 11.7 112 435-546 151-267 (287)
153 COG4700 Uncharacterized protei 98.0 0.00058 1.2E-08 55.5 15.6 134 400-535 85-222 (251)
154 PF04840 Vps16_C: Vps16, C-ter 98.0 0.011 2.5E-07 54.9 27.4 110 340-466 179-288 (319)
155 PF12895 Apc3: Anaphase-promot 98.0 4.9E-06 1.1E-10 60.8 3.7 77 454-531 3-83 (84)
156 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00011 2.3E-09 58.1 11.6 104 406-509 4-113 (119)
157 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.5E-10 46.9 4.4 33 370-402 2-34 (34)
158 KOG0553 TPR repeat-containing 98.0 5.8E-05 1.3E-09 66.4 9.9 104 414-519 91-196 (304)
159 PLN03088 SGT1, suppressor of 97.9 0.00014 2.9E-09 69.5 11.0 107 411-519 9-117 (356)
160 PRK15331 chaperone protein Sic 97.9 0.00046 9.9E-09 55.7 12.1 90 445-534 42-133 (165)
161 PF13371 TPR_9: Tetratricopept 97.8 5.4E-05 1.2E-09 53.5 6.3 59 479-537 2-60 (73)
162 PLN03088 SGT1, suppressor of 97.8 0.00031 6.6E-09 67.1 13.0 105 375-482 8-113 (356)
163 PRK02603 photosystem I assembl 97.8 0.00067 1.5E-08 57.5 13.7 129 370-521 36-166 (172)
164 PF14559 TPR_19: Tetratricopep 97.8 2.2E-05 4.7E-10 54.7 3.8 53 483-535 2-54 (68)
165 PRK02603 photosystem I assembl 97.8 0.0002 4.3E-09 60.7 10.4 94 442-535 37-149 (172)
166 COG3898 Uncharacterized membra 97.8 0.027 5.9E-07 51.9 27.7 278 250-544 98-399 (531)
167 PF04840 Vps16_C: Vps16, C-ter 97.8 0.016 3.5E-07 54.0 23.3 79 243-328 184-262 (319)
168 PF13432 TPR_16: Tetratricopep 97.8 6.3E-05 1.4E-09 51.7 5.7 61 446-506 3-65 (65)
169 cd00189 TPR Tetratricopeptide 97.8 0.00034 7.3E-09 52.4 10.4 91 411-503 7-99 (100)
170 KOG0553 TPR repeat-containing 97.8 8.5E-05 1.8E-09 65.4 7.4 88 448-535 89-178 (304)
171 PRK10153 DNA-binding transcrip 97.8 0.0014 3E-08 65.5 16.7 66 441-506 421-487 (517)
172 CHL00033 ycf3 photosystem I as 97.8 0.00024 5.1E-09 60.1 9.8 93 440-532 35-139 (168)
173 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 53.7 6.4 79 383-464 3-82 (84)
174 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.5E-08 60.9 14.0 133 370-505 2-140 (280)
175 PF01535 PPR: PPR repeat; Int 97.7 5.4E-05 1.2E-09 42.8 3.2 31 167-197 1-31 (31)
176 PF01535 PPR: PPR repeat; Int 97.6 7.8E-05 1.7E-09 42.2 3.6 30 371-400 2-31 (31)
177 PF13431 TPR_17: Tetratricopep 97.5 4.6E-05 1E-09 43.8 1.7 33 495-527 2-34 (34)
178 CHL00033 ycf3 photosystem I as 97.5 0.0049 1.1E-07 52.0 14.7 79 371-451 37-117 (168)
179 PF10037 MRP-S27: Mitochondria 97.5 0.0014 3.1E-08 62.6 12.2 116 235-351 65-186 (429)
180 PRK10866 outer membrane biogen 97.5 0.011 2.5E-07 52.9 17.0 56 478-533 181-239 (243)
181 PRK10153 DNA-binding transcrip 97.5 0.0052 1.1E-07 61.5 16.3 134 400-537 333-484 (517)
182 KOG0550 Molecular chaperone (D 97.5 0.0024 5.3E-08 58.9 12.6 256 243-504 56-353 (486)
183 PRK10803 tol-pal system protei 97.5 0.00096 2.1E-08 60.2 10.0 99 407-505 146-250 (263)
184 PF14938 SNAP: Soluble NSF att 97.5 0.0061 1.3E-07 56.4 15.5 96 372-467 158-264 (282)
185 PF14938 SNAP: Soluble NSF att 97.4 0.0064 1.4E-07 56.2 15.3 109 345-466 101-222 (282)
186 PF14559 TPR_19: Tetratricopep 97.4 0.00014 3.1E-09 50.5 3.4 49 416-466 3-51 (68)
187 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00051 1.1E-08 65.0 7.5 65 471-535 74-141 (453)
188 PRK15363 pathogenicity island 97.4 0.0085 1.9E-07 48.3 13.1 86 375-464 41-127 (157)
189 KOG1538 Uncharacterized conser 97.4 0.058 1.2E-06 53.1 20.8 85 406-500 749-845 (1081)
190 PF10037 MRP-S27: Mitochondria 97.4 0.0048 1E-07 59.2 13.7 113 302-414 65-183 (429)
191 PF13414 TPR_11: TPR repeat; P 97.4 0.00052 1.1E-08 47.8 5.6 65 439-503 2-69 (69)
192 KOG2041 WD40 repeat protein [G 97.4 0.2 4.3E-06 50.0 24.9 207 34-268 689-910 (1189)
193 PF13428 TPR_14: Tetratricopep 97.3 0.00031 6.8E-09 43.5 3.8 42 473-514 2-43 (44)
194 PF12688 TPR_5: Tetratrico pep 97.3 0.0022 4.8E-08 49.7 9.3 85 447-531 8-100 (120)
195 COG4700 Uncharacterized protei 97.3 0.03 6.5E-07 45.9 15.5 127 299-427 85-216 (251)
196 PF13281 DUF4071: Domain of un 97.3 0.069 1.5E-06 50.3 20.3 161 343-506 146-339 (374)
197 PF08579 RPM2: Mitochondrial r 97.3 0.0042 9.1E-08 46.3 9.7 79 373-452 29-116 (120)
198 KOG2280 Vacuolar assembly/sort 97.3 0.25 5.4E-06 49.8 26.4 111 338-464 684-794 (829)
199 KOG2041 WD40 repeat protein [G 97.3 0.24 5.1E-06 49.5 26.6 130 52-192 678-822 (1189)
200 PRK10803 tol-pal system protei 97.3 0.0045 9.7E-08 55.9 11.8 93 443-535 146-246 (263)
201 PF05843 Suf: Suppressor of fo 97.3 0.0024 5.1E-08 58.8 10.2 129 405-535 2-136 (280)
202 PF08579 RPM2: Mitochondrial r 97.3 0.0044 9.6E-08 46.2 9.4 79 271-350 29-116 (120)
203 PRK10866 outer membrane biogen 97.2 0.12 2.6E-06 46.3 20.4 58 273-333 38-99 (243)
204 PF12688 TPR_5: Tetratrico pep 97.2 0.014 3.1E-07 45.2 12.3 91 375-465 7-100 (120)
205 KOG2280 Vacuolar assembly/sort 97.2 0.33 7.1E-06 49.0 24.1 103 273-391 690-792 (829)
206 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.9E-08 46.3 6.0 64 447-510 2-67 (73)
207 KOG1538 Uncharacterized conser 97.1 0.034 7.4E-07 54.6 16.6 24 241-264 778-801 (1081)
208 KOG0550 Molecular chaperone (D 97.1 0.13 2.7E-06 48.1 19.2 273 4-296 51-350 (486)
209 KOG2796 Uncharacterized conser 97.1 0.025 5.5E-07 49.1 13.7 133 371-504 179-318 (366)
210 PF13525 YfiO: Outer membrane 97.1 0.034 7.4E-07 48.5 14.9 49 478-526 147-198 (203)
211 KOG1130 Predicted G-alpha GTPa 97.0 0.0053 1.2E-07 56.6 9.5 129 405-533 196-342 (639)
212 KOG0543 FKBP-type peptidyl-pro 97.0 0.012 2.5E-07 54.7 11.7 95 441-535 258-355 (397)
213 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.38 8.2E-06 45.6 31.9 133 369-504 397-534 (660)
214 PF06239 ECSIT: Evolutionarily 96.8 0.017 3.6E-07 49.1 10.4 96 359-455 35-153 (228)
215 KOG0543 FKBP-type peptidyl-pro 96.8 0.0069 1.5E-07 56.2 8.9 64 473-536 258-321 (397)
216 COG4235 Cytochrome c biogenesi 96.8 0.09 1.9E-06 47.2 15.5 105 401-507 153-262 (287)
217 PF09205 DUF1955: Domain of un 96.8 0.087 1.9E-06 40.6 12.6 146 374-538 5-152 (161)
218 PF13512 TPR_18: Tetratricopep 96.7 0.052 1.1E-06 43.0 11.8 89 447-535 17-128 (142)
219 PF13424 TPR_12: Tetratricopep 96.7 0.002 4.4E-08 46.1 3.8 61 473-533 6-73 (78)
220 PF12921 ATP13: Mitochondrial 96.7 0.024 5.1E-07 44.5 9.9 53 398-450 46-98 (126)
221 PF06239 ECSIT: Evolutionarily 96.7 0.015 3.2E-07 49.4 9.1 97 256-353 34-153 (228)
222 KOG2114 Vacuolar assembly/sort 96.7 0.36 7.8E-06 49.4 20.0 56 342-397 709-764 (933)
223 PF13525 YfiO: Outer membrane 96.7 0.37 7.9E-06 42.0 18.6 84 372-459 113-197 (203)
224 KOG2796 Uncharacterized conser 96.7 0.22 4.9E-06 43.5 16.1 126 409-535 182-315 (366)
225 PF03704 BTAD: Bacterial trans 96.5 0.009 1.9E-07 49.0 7.0 68 474-541 64-136 (146)
226 PF07079 DUF1347: Protein of u 96.5 0.87 1.9E-05 43.4 29.2 69 12-80 89-179 (549)
227 COG3898 Uncharacterized membra 96.4 0.89 1.9E-05 42.4 26.3 211 247-466 165-389 (531)
228 PF13424 TPR_12: Tetratricopep 96.3 0.0069 1.5E-07 43.3 4.5 59 442-500 7-74 (78)
229 COG1729 Uncharacterized protei 96.3 0.05 1.1E-06 48.1 10.3 101 406-507 144-250 (262)
230 COG3118 Thioredoxin domain-con 96.2 0.2 4.2E-06 44.9 13.7 119 414-535 144-265 (304)
231 PRK11906 transcriptional regul 96.2 0.085 1.8E-06 50.5 11.9 144 384-530 273-431 (458)
232 PF13281 DUF4071: Domain of un 96.2 0.65 1.4E-05 44.0 17.4 72 241-313 146-227 (374)
233 COG4105 ComL DNA uptake lipopr 96.1 0.86 1.9E-05 40.2 20.0 157 378-535 43-233 (254)
234 COG1729 Uncharacterized protei 96.1 0.042 9.2E-07 48.5 9.0 96 442-538 144-247 (262)
235 COG3118 Thioredoxin domain-con 96.0 0.61 1.3E-05 41.9 15.6 168 356-525 121-291 (304)
236 PRK11906 transcriptional regul 96.0 0.45 9.7E-06 45.8 15.7 140 353-497 273-432 (458)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.046 1E-06 52.2 9.2 62 440-501 75-141 (453)
238 PF10300 DUF3808: Protein of u 96.0 0.41 8.9E-06 47.8 16.3 160 372-534 191-375 (468)
239 PF09205 DUF1955: Domain of un 95.9 0.58 1.3E-05 36.3 13.4 138 277-437 12-152 (161)
240 KOG1941 Acetylcholine receptor 95.8 0.092 2E-06 48.0 9.8 161 372-532 86-272 (518)
241 KOG4555 TPR repeat-containing 95.8 0.1 2.2E-06 40.2 8.3 88 449-536 52-145 (175)
242 PF07719 TPR_2: Tetratricopept 95.7 0.028 6.2E-07 32.1 4.4 32 474-505 3-34 (34)
243 KOG1130 Predicted G-alpha GTPa 95.7 0.058 1.3E-06 50.1 8.3 128 305-432 197-343 (639)
244 PF03704 BTAD: Bacterial trans 95.6 0.16 3.5E-06 41.6 10.1 71 372-443 65-139 (146)
245 PF13512 TPR_18: Tetratricopep 95.6 0.58 1.3E-05 37.3 12.3 116 376-507 17-134 (142)
246 PF00515 TPR_1: Tetratricopept 95.5 0.026 5.7E-07 32.3 3.8 32 473-504 2-33 (34)
247 PRK15331 chaperone protein Sic 95.5 0.37 8E-06 39.4 11.3 84 380-466 48-131 (165)
248 COG0457 NrfG FOG: TPR repeat [ 95.5 1.7 3.7E-05 38.6 25.2 198 303-504 59-268 (291)
249 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.5 5.5E-05 40.4 28.2 128 405-534 398-530 (660)
250 PF04184 ST7: ST7 protein; In 95.4 0.47 1E-05 45.8 13.3 141 380-534 179-323 (539)
251 smart00299 CLH Clathrin heavy 95.4 1.2 2.5E-05 36.1 14.8 125 372-516 10-135 (140)
252 COG0457 NrfG FOG: TPR repeat [ 95.4 1.8 4E-05 38.4 25.7 218 317-536 37-266 (291)
253 KOG2610 Uncharacterized conser 95.3 0.21 4.6E-06 45.2 10.1 160 380-542 114-283 (491)
254 smart00299 CLH Clathrin heavy 95.2 1.4 2.9E-05 35.7 14.7 87 5-95 10-96 (140)
255 PF04184 ST7: ST7 protein; In 95.2 1.5 3.2E-05 42.6 15.8 102 404-505 259-379 (539)
256 KOG2610 Uncharacterized conser 95.1 0.77 1.7E-05 41.8 13.1 175 349-526 114-306 (491)
257 KOG1258 mRNA processing protei 95.1 4 8.7E-05 40.6 29.6 407 67-520 44-489 (577)
258 PF10300 DUF3808: Protein of u 95.0 1.4 3.1E-05 44.0 16.4 161 269-432 190-375 (468)
259 PF04053 Coatomer_WDAD: Coatom 95.0 0.71 1.5E-05 45.4 13.9 45 450-497 328-372 (443)
260 PF12921 ATP13: Mitochondrial 94.9 0.31 6.8E-06 38.3 9.3 49 265-313 50-98 (126)
261 KOG1585 Protein required for f 94.7 2.8 6E-05 36.6 15.5 50 476-526 194-247 (308)
262 PF02259 FAT: FAT domain; Int 94.6 3.5 7.6E-05 39.6 18.0 150 367-519 144-305 (352)
263 KOG4555 TPR repeat-containing 94.6 0.11 2.4E-06 39.9 5.6 57 480-536 51-107 (175)
264 PF04053 Coatomer_WDAD: Coatom 94.6 0.78 1.7E-05 45.1 13.0 127 76-225 269-397 (443)
265 KOG4234 TPR repeat-containing 94.3 0.14 3.1E-06 42.7 6.1 101 413-515 104-211 (271)
266 COG4785 NlpI Lipoprotein NlpI, 94.3 3 6.6E-05 35.7 14.1 160 369-535 99-266 (297)
267 KOG3941 Intermediate in Toll s 94.2 0.59 1.3E-05 41.5 9.8 99 357-456 53-174 (406)
268 PF02259 FAT: FAT domain; Int 94.0 3.2 6.9E-05 40.0 16.1 66 470-535 144-213 (352)
269 KOG1920 IkappaB kinase complex 93.9 6 0.00013 42.9 18.1 155 148-365 893-1053(1265)
270 PF00637 Clathrin: Region in C 93.8 0.19 4E-06 41.0 6.2 129 7-150 12-140 (143)
271 COG4649 Uncharacterized protei 93.8 1.2 2.5E-05 36.6 10.1 121 379-500 68-195 (221)
272 PF13181 TPR_8: Tetratricopept 93.6 0.14 3.1E-06 29.2 3.7 31 474-504 3-33 (34)
273 KOG0890 Protein kinase of the 93.4 15 0.00033 43.2 21.2 307 210-537 1392-1733(2382)
274 PF08631 SPO22: Meiosis protei 93.4 6.4 0.00014 36.3 24.0 18 482-499 256-273 (278)
275 PF07035 Mic1: Colon cancer-as 93.4 3.9 8.5E-05 33.9 14.0 135 22-196 14-150 (167)
276 PF13428 TPR_14: Tetratricopep 93.3 0.25 5.3E-06 30.4 4.6 41 2-43 1-41 (44)
277 COG3629 DnrI DNA-binding trans 93.1 0.44 9.6E-06 43.0 7.7 59 442-500 155-215 (280)
278 PF09613 HrpB1_HrpK: Bacterial 93.1 4.1 8.9E-05 33.3 13.2 117 405-526 8-129 (160)
279 PF13176 TPR_7: Tetratricopept 93.0 0.17 3.7E-06 29.4 3.4 25 509-533 2-26 (36)
280 TIGR02561 HrpB1_HrpK type III 93.0 0.69 1.5E-05 36.9 7.6 72 452-523 22-95 (153)
281 KOG2066 Vacuolar assembly/sort 92.9 13 0.00028 38.5 19.8 98 13-112 367-467 (846)
282 KOG1941 Acetylcholine receptor 92.8 8.2 0.00018 36.0 18.8 164 269-432 85-274 (518)
283 PF09613 HrpB1_HrpK: Bacterial 92.8 0.69 1.5E-05 37.6 7.6 83 441-523 8-95 (160)
284 KOG1586 Protein required for f 92.8 6.1 0.00013 34.4 16.3 52 483-534 165-223 (288)
285 KOG1258 mRNA processing protei 92.8 12 0.00025 37.6 28.7 95 237-332 298-395 (577)
286 KOG1586 Protein required for f 92.7 6.4 0.00014 34.3 14.4 58 451-508 165-231 (288)
287 COG2976 Uncharacterized protei 92.6 5.6 0.00012 33.6 13.8 113 387-504 70-191 (207)
288 PF13176 TPR_7: Tetratricopept 92.6 0.22 4.8E-06 28.9 3.5 28 474-501 1-28 (36)
289 KOG3941 Intermediate in Toll s 92.6 1.1 2.3E-05 39.9 8.8 99 255-354 53-174 (406)
290 KOG2114 Vacuolar assembly/sort 92.5 16 0.00034 38.3 29.3 118 40-162 337-458 (933)
291 PRK10941 hypothetical protein; 92.5 1 2.2E-05 40.8 9.2 63 475-537 184-246 (269)
292 PRK09687 putative lyase; Provi 92.3 9.2 0.0002 35.2 25.2 73 235-313 205-277 (280)
293 PRK09687 putative lyase; Provi 91.9 10 0.00022 35.0 26.3 135 367-515 140-276 (280)
294 PF13170 DUF4003: Protein of u 91.8 10 0.00022 35.2 14.9 63 386-449 160-226 (297)
295 COG3947 Response regulator con 91.6 8.9 0.00019 34.6 13.4 59 475-533 282-340 (361)
296 PF10602 RPN7: 26S proteasome 91.6 4.7 0.0001 34.1 11.7 96 371-466 38-139 (177)
297 COG2909 MalT ATP-dependent tra 91.5 21 0.00046 37.7 22.6 25 511-535 623-647 (894)
298 KOG4648 Uncharacterized conser 91.3 0.45 9.8E-06 43.3 5.5 97 410-509 103-202 (536)
299 PF13174 TPR_6: Tetratricopept 91.3 0.41 9E-06 26.8 3.7 27 478-504 6-32 (33)
300 PF07719 TPR_2: Tetratricopept 91.2 0.23 5.1E-06 28.2 2.5 29 507-535 2-30 (34)
301 PRK15180 Vi polysaccharide bio 91.0 3.6 7.8E-05 39.7 11.1 89 414-504 333-423 (831)
302 KOG4234 TPR repeat-containing 90.7 2.6 5.5E-05 35.6 8.8 92 376-471 102-200 (271)
303 KOG1585 Protein required for f 90.6 11 0.00025 33.0 15.2 202 270-495 34-250 (308)
304 COG4649 Uncharacterized protei 90.2 9.4 0.0002 31.6 15.6 117 349-466 69-193 (221)
305 PF07035 Mic1: Colon cancer-as 90.2 9.6 0.00021 31.6 14.3 42 121-162 15-56 (167)
306 PRK12798 chemotaxis protein; R 89.8 20 0.00042 34.5 22.7 179 351-532 125-321 (421)
307 PF11207 DUF2989: Protein of u 89.6 1.9 4.1E-05 36.6 7.4 75 451-526 118-198 (203)
308 PF10602 RPN7: 26S proteasome 89.5 6.2 0.00013 33.4 10.6 63 269-332 38-102 (177)
309 COG2976 Uncharacterized protei 89.5 11 0.00023 32.0 11.4 90 446-536 95-189 (207)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 89.5 2.2 4.8E-05 31.1 6.5 49 466-514 36-84 (103)
311 PF07721 TPR_4: Tetratricopept 89.4 0.48 1E-05 25.1 2.5 24 507-530 2-25 (26)
312 PF13374 TPR_10: Tetratricopep 89.3 0.87 1.9E-05 27.2 4.1 26 475-500 5-30 (42)
313 PF00515 TPR_1: Tetratricopept 89.1 0.87 1.9E-05 25.8 3.8 27 371-397 3-29 (34)
314 KOG4648 Uncharacterized conser 89.1 1.2 2.6E-05 40.7 6.2 93 376-472 104-198 (536)
315 COG4785 NlpI Lipoprotein NlpI, 89.0 14 0.00031 31.8 13.6 176 317-502 79-267 (297)
316 PF02284 COX5A: Cytochrome c o 88.8 2.8 6E-05 31.0 6.7 49 466-514 39-87 (108)
317 COG4105 ComL DNA uptake lipopr 88.4 18 0.00038 32.3 19.7 61 446-506 173-238 (254)
318 PF08631 SPO22: Meiosis protei 88.0 22 0.00048 32.8 25.1 60 372-433 87-150 (278)
319 KOG2396 HAT (Half-A-TPR) repea 87.8 29 0.00064 34.1 31.6 241 283-533 298-557 (568)
320 PF14853 Fis1_TPR_C: Fis1 C-te 87.7 1.4 3E-05 28.3 4.2 33 476-508 5-37 (53)
321 PF13431 TPR_17: Tetratricopep 87.6 0.71 1.5E-05 26.4 2.6 24 437-460 10-33 (34)
322 PRK11619 lytic murein transgly 87.6 40 0.00087 35.4 31.6 49 484-532 324-372 (644)
323 smart00028 TPR Tetratricopepti 87.6 1.3 2.8E-05 24.0 4.0 29 475-503 4-32 (34)
324 COG3629 DnrI DNA-binding trans 87.5 5.3 0.00012 36.3 9.3 74 340-413 155-236 (280)
325 PF13174 TPR_6: Tetratricopept 87.1 0.53 1.2E-05 26.4 2.0 29 508-536 2-30 (33)
326 PF13181 TPR_8: Tetratricopept 87.0 1.1 2.4E-05 25.3 3.3 29 507-535 2-30 (34)
327 COG1747 Uncharacterized N-term 87.0 33 0.00072 33.9 22.2 49 301-351 64-112 (711)
328 KOG4279 Serine/threonine prote 86.6 24 0.00052 36.5 13.8 107 379-512 297-406 (1226)
329 PF04097 Nic96: Nup93/Nic96; 86.6 45 0.00098 34.9 23.3 44 70-113 113-158 (613)
330 PF02284 COX5A: Cytochrome c o 86.6 4 8.6E-05 30.2 6.4 60 387-448 28-87 (108)
331 PF00637 Clathrin: Region in C 86.1 1.4 3E-05 35.8 4.6 85 206-293 12-96 (143)
332 PRK15180 Vi polysaccharide bio 85.8 7.6 0.00016 37.6 9.6 131 348-481 299-434 (831)
333 PF14561 TPR_20: Tetratricopep 85.6 2.3 5E-05 31.1 5.1 39 495-533 11-49 (90)
334 KOG0276 Vesicle coat complex C 85.5 17 0.00038 36.5 12.0 102 245-364 646-747 (794)
335 cd00923 Cyt_c_Oxidase_Va Cytoc 85.5 12 0.00027 27.4 8.6 63 384-448 22-84 (103)
336 KOG0276 Vesicle coat complex C 85.3 26 0.00057 35.3 13.1 25 442-466 668-692 (794)
337 TIGR02508 type_III_yscG type I 85.0 9.8 0.00021 28.1 7.7 87 115-205 20-106 (115)
338 KOG1550 Extracellular protein 84.8 52 0.0011 34.0 19.9 246 277-535 259-538 (552)
339 COG4455 ImpE Protein of avirul 84.7 4.9 0.00011 34.5 7.1 73 443-515 4-81 (273)
340 KOG4570 Uncharacterized conser 84.6 11 0.00025 34.4 9.6 100 332-433 58-164 (418)
341 KOG1464 COP9 signalosome, subu 84.5 30 0.00064 31.0 17.8 239 250-494 41-325 (440)
342 KOG4570 Uncharacterized conser 84.5 6.7 0.00014 35.7 8.2 102 128-231 57-165 (418)
343 PF10345 Cohesin_load: Cohesin 84.2 59 0.0013 34.2 33.1 49 485-533 547-604 (608)
344 TIGR03504 FimV_Cterm FimV C-te 84.0 2.2 4.7E-05 26.1 3.6 27 510-536 3-29 (44)
345 PF13374 TPR_10: Tetratricopep 83.6 1.7 3.7E-05 25.9 3.2 29 2-30 2-30 (42)
346 TIGR02508 type_III_yscG type I 83.0 17 0.00036 26.9 8.2 79 16-97 19-97 (115)
347 KOG0545 Aryl-hydrocarbon recep 82.9 4.3 9.3E-05 35.5 6.2 56 480-535 238-293 (329)
348 KOG1308 Hsp70-interacting prot 82.4 0.97 2.1E-05 41.5 2.3 58 481-538 157-214 (377)
349 PF04190 DUF410: Protein of un 81.4 23 0.00049 32.3 10.8 31 235-265 89-119 (260)
350 smart00386 HAT HAT (Half-A-TPR 81.2 2.9 6.2E-05 23.1 3.4 30 486-515 1-30 (33)
351 PF06552 TOM20_plant: Plant sp 80.9 2.5 5.4E-05 35.1 4.0 63 468-538 64-139 (186)
352 COG0790 FOG: TPR repeat, SEL1 80.8 48 0.001 30.8 16.8 48 487-537 206-268 (292)
353 TIGR02561 HrpB1_HrpK type III 80.8 28 0.00061 28.1 11.8 66 416-484 22-89 (153)
354 KOG2063 Vacuolar assembly/sort 80.6 91 0.002 33.8 17.3 28 269-296 506-533 (877)
355 PF13170 DUF4003: Protein of u 80.5 50 0.0011 30.8 16.2 125 284-411 79-224 (297)
356 KOG3364 Membrane protein invol 80.3 8.2 0.00018 30.4 6.2 71 437-507 29-106 (149)
357 PF13934 ELYS: Nuclear pore co 79.4 34 0.00073 30.4 10.9 98 42-146 81-183 (226)
358 PF09986 DUF2225: Uncharacteri 79.1 12 0.00026 32.8 7.9 64 474-537 120-196 (214)
359 KOG2066 Vacuolar assembly/sort 78.9 90 0.002 32.8 27.9 100 75-178 363-467 (846)
360 PF11207 DUF2989: Protein of u 78.5 23 0.0005 30.3 9.0 73 386-459 123-197 (203)
361 KOG3364 Membrane protein invol 78.3 25 0.00054 27.8 8.2 62 473-534 33-99 (149)
362 KOG2396 HAT (Half-A-TPR) repea 77.8 77 0.0017 31.4 28.1 102 360-464 450-554 (568)
363 PF13929 mRNA_stabil: mRNA sta 77.7 57 0.0012 29.8 15.0 65 298-362 197-262 (292)
364 KOG1550 Extracellular protein 76.7 98 0.0021 32.0 18.6 170 283-462 228-419 (552)
365 KOG4507 Uncharacterized conser 76.5 8.7 0.00019 38.3 6.7 100 415-517 618-721 (886)
366 KOG1920 IkappaB kinase complex 76.4 1.3E+02 0.0029 33.4 25.9 144 340-499 910-1053(1265)
367 COG3947 Response regulator con 75.9 64 0.0014 29.5 14.1 59 442-500 281-341 (361)
368 PHA02875 ankyrin repeat protei 75.8 61 0.0013 32.0 13.0 143 11-162 8-159 (413)
369 smart00028 TPR Tetratricopepti 75.7 4.6 9.9E-05 21.6 3.2 29 507-535 2-30 (34)
370 KOG3807 Predicted membrane pro 75.6 35 0.00075 31.5 9.7 18 490-507 380-397 (556)
371 COG2909 MalT ATP-dependent tra 75.5 1.2E+02 0.0026 32.5 26.9 216 246-465 425-684 (894)
372 PF12862 Apc5: Anaphase-promot 75.3 11 0.00023 27.9 5.7 53 482-534 8-69 (94)
373 TIGR03504 FimV_Cterm FimV C-te 74.9 7.5 0.00016 23.8 3.9 24 375-398 5-28 (44)
374 KOG4642 Chaperone-dependent E3 74.5 9.4 0.0002 33.4 5.7 117 413-532 19-143 (284)
375 cd08819 CARD_MDA5_2 Caspase ac 73.1 19 0.00042 25.9 6.0 67 20-88 20-86 (88)
376 PRK13800 putative oxidoreducta 72.4 1.7E+02 0.0036 32.7 25.1 258 254-534 622-880 (897)
377 COG5159 RPN6 26S proteasome re 72.2 78 0.0017 28.8 13.5 51 375-425 9-66 (421)
378 PRK11619 lytic murein transgly 72.2 1.4E+02 0.003 31.6 39.4 248 280-540 254-510 (644)
379 KOG4077 Cytochrome c oxidase, 71.9 26 0.00057 27.2 6.9 59 387-447 67-125 (149)
380 PF13934 ELYS: Nuclear pore co 71.5 74 0.0016 28.3 12.4 21 410-430 114-134 (226)
381 PF13762 MNE1: Mitochondrial s 71.1 40 0.00087 27.2 8.2 79 138-216 42-130 (145)
382 PF07163 Pex26: Pex26 protein; 70.9 50 0.0011 30.0 9.4 83 345-427 90-181 (309)
383 KOG0376 Serine-threonine phosp 70.7 4.5 9.8E-05 39.2 3.4 101 411-514 11-114 (476)
384 PF10579 Rapsyn_N: Rapsyn N-te 69.7 12 0.00026 26.3 4.3 46 416-461 18-64 (80)
385 KOG4077 Cytochrome c oxidase, 69.4 23 0.00051 27.5 6.1 48 466-513 78-125 (149)
386 PF09670 Cas_Cas02710: CRISPR- 69.0 1E+02 0.0023 29.9 12.3 53 379-432 141-197 (379)
387 PF10366 Vps39_1: Vacuolar sor 68.8 50 0.0011 25.2 8.8 40 487-534 28-67 (108)
388 PF10579 Rapsyn_N: Rapsyn N-te 68.7 9.2 0.0002 26.8 3.6 45 484-528 18-65 (80)
389 KOG2062 26S proteasome regulat 68.4 1.6E+02 0.0035 30.9 24.0 26 103-128 213-238 (929)
390 cd00280 TRFH Telomeric Repeat 66.6 28 0.0006 29.2 6.6 36 479-515 118-153 (200)
391 KOG0890 Protein kinase of the 66.6 3.1E+02 0.0067 33.5 27.9 105 405-513 1671-1796(2382)
392 PF04910 Tcf25: Transcriptiona 66.5 1.3E+02 0.0028 29.1 12.4 57 376-432 110-167 (360)
393 PF07720 TPR_3: Tetratricopept 65.0 24 0.00052 20.5 4.4 28 477-504 6-35 (36)
394 PF09477 Type_III_YscG: Bacter 64.6 59 0.0013 24.6 7.4 82 112-196 18-99 (116)
395 KOG1464 COP9 signalosome, subu 64.2 1.1E+02 0.0024 27.6 19.3 52 279-330 39-92 (440)
396 PF13762 MNE1: Mitochondrial s 63.9 70 0.0015 25.9 8.2 78 71-148 42-128 (145)
397 PF09477 Type_III_YscG: Bacter 63.8 62 0.0013 24.5 8.0 80 15-97 19-98 (116)
398 COG2912 Uncharacterized conser 62.9 30 0.00065 31.2 6.7 59 477-535 186-244 (269)
399 KOG4642 Chaperone-dependent E3 62.7 1.1E+02 0.0024 27.1 9.8 117 348-466 20-143 (284)
400 KOG1498 26S proteasome regulat 61.8 1.5E+02 0.0033 28.4 15.3 216 351-568 25-274 (439)
401 PF14863 Alkyl_sulf_dimr: Alky 61.8 24 0.00053 28.4 5.4 63 457-522 58-120 (141)
402 KOG3824 Huntingtin interacting 61.7 14 0.00031 33.5 4.5 61 450-510 126-188 (472)
403 PF11846 DUF3366: Domain of un 61.0 39 0.00085 29.0 7.2 35 469-503 141-175 (193)
404 PF10366 Vps39_1: Vacuolar sor 60.3 74 0.0016 24.2 7.7 27 371-397 41-67 (108)
405 COG4976 Predicted methyltransf 59.6 20 0.00042 31.3 4.7 58 450-507 5-64 (287)
406 COG4976 Predicted methyltransf 58.9 22 0.00048 31.0 4.9 57 413-471 4-61 (287)
407 PF07163 Pex26: Pex26 protein; 58.6 1.4E+02 0.003 27.3 9.8 86 274-361 90-181 (309)
408 cd08819 CARD_MDA5_2 Caspase ac 58.5 66 0.0014 23.3 6.4 38 248-286 48-85 (88)
409 KOG4814 Uncharacterized conser 58.3 1.1E+02 0.0024 31.4 10.1 86 450-535 364-457 (872)
410 KOG0991 Replication factor C, 58.3 1.3E+02 0.0029 26.6 12.8 135 344-504 136-270 (333)
411 PHA02875 ankyrin repeat protei 58.2 1.9E+02 0.004 28.6 12.4 13 147-159 44-56 (413)
412 KOG0292 Vesicle coat complex C 58.2 87 0.0019 33.5 9.6 159 342-535 624-782 (1202)
413 PF11846 DUF3366: Domain of un 57.6 43 0.00093 28.8 6.8 52 415-466 119-170 (193)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 57.3 67 0.0015 25.3 7.2 42 490-531 81-124 (126)
415 PRK10941 hypothetical protein; 55.5 1.6E+02 0.0036 26.9 10.3 76 372-449 184-260 (269)
416 KOG0551 Hsp90 co-chaperone CNS 55.1 61 0.0013 30.2 7.2 86 447-532 88-179 (390)
417 KOG2422 Uncharacterized conser 55.0 1.3E+02 0.0028 30.5 9.9 90 6-95 346-446 (665)
418 COG1747 Uncharacterized N-term 55.0 2.4E+02 0.0051 28.4 22.0 175 266-450 65-249 (711)
419 KOG2300 Uncharacterized conser 53.7 2.4E+02 0.0052 28.1 31.8 121 277-397 333-473 (629)
420 PF14561 TPR_20: Tetratricopep 53.4 87 0.0019 22.9 7.2 51 471-521 21-73 (90)
421 PF14853 Fis1_TPR_C: Fis1 C-te 53.3 46 0.001 21.4 4.6 29 375-405 7-35 (53)
422 PRK13342 recombination factor 52.8 2.4E+02 0.0053 27.9 15.0 47 269-316 229-278 (413)
423 KOG0530 Protein farnesyltransf 52.5 1.8E+02 0.0039 26.3 12.5 129 379-512 53-187 (318)
424 PF11838 ERAP1_C: ERAP1-like C 52.5 2.1E+02 0.0045 27.0 18.3 83 420-502 146-231 (324)
425 PF04910 Tcf25: Transcriptiona 51.6 2.3E+02 0.0051 27.3 17.8 95 439-533 99-220 (360)
426 COG5191 Uncharacterized conser 51.4 40 0.00087 30.9 5.5 79 436-514 103-184 (435)
427 PF11848 DUF3368: Domain of un 51.3 47 0.001 20.7 4.4 37 107-143 9-45 (48)
428 KOG2471 TPR repeat-containing 50.8 2.7E+02 0.0058 27.8 12.3 317 193-517 9-380 (696)
429 PF04034 DUF367: Domain of unk 50.4 1.2E+02 0.0027 23.8 7.4 59 440-498 66-125 (127)
430 KOG2908 26S proteasome regulat 49.7 1.6E+02 0.0035 27.7 9.0 19 313-331 85-103 (380)
431 PF06552 TOM20_plant: Plant sp 49.0 1.6E+02 0.0036 24.9 9.7 60 386-450 52-123 (186)
432 KOG4507 Uncharacterized conser 48.5 1E+02 0.0022 31.3 8.1 122 447-569 613-753 (886)
433 cd00280 TRFH Telomeric Repeat 48.5 1.3E+02 0.0028 25.5 7.5 19 413-431 120-138 (200)
434 KOG0687 26S proteasome regulat 48.5 2.4E+02 0.0051 26.5 11.8 132 298-433 65-210 (393)
435 PF11663 Toxin_YhaV: Toxin wit 48.3 29 0.00063 27.4 3.6 33 176-210 105-137 (140)
436 COG5159 RPN6 26S proteasome re 48.3 2.2E+02 0.0048 26.1 20.3 34 172-205 9-42 (421)
437 PF09670 Cas_Cas02710: CRISPR- 48.1 2.3E+02 0.005 27.6 10.7 53 413-467 140-196 (379)
438 cd08326 CARD_CASP9 Caspase act 48.0 60 0.0013 23.4 5.1 63 21-87 18-80 (84)
439 KOG0376 Serine-threonine phosp 47.9 33 0.0007 33.6 4.7 103 376-483 11-116 (476)
440 KOG0545 Aryl-hydrocarbon recep 47.8 1.1E+02 0.0025 27.2 7.4 70 442-511 232-303 (329)
441 PF07575 Nucleopor_Nup85: Nup8 47.7 3.5E+02 0.0076 28.2 15.9 94 266-364 371-464 (566)
442 KOG1308 Hsp70-interacting prot 46.9 25 0.00054 32.8 3.6 83 418-502 128-212 (377)
443 PF11817 Foie-gras_1: Foie gra 46.2 76 0.0016 28.7 6.8 22 411-432 185-206 (247)
444 PF04090 RNA_pol_I_TF: RNA pol 46.0 51 0.0011 28.4 5.1 48 4-52 43-91 (199)
445 PRK10564 maltose regulon perip 45.8 43 0.00094 30.8 4.9 39 371-409 259-297 (303)
446 PF13929 mRNA_stabil: mRNA sta 44.6 2.6E+02 0.0056 25.8 22.6 112 354-465 144-263 (292)
447 PF08311 Mad3_BUB1_I: Mad3/BUB 44.5 1.6E+02 0.0034 23.3 9.2 43 387-429 81-124 (126)
448 PF12968 DUF3856: Domain of Un 44.0 1.5E+02 0.0033 23.0 10.8 22 511-532 105-126 (144)
449 PF04097 Nic96: Nup93/Nic96; 43.9 4.1E+02 0.009 28.0 21.3 62 35-97 110-181 (613)
450 COG4455 ImpE Protein of avirul 43.7 2.3E+02 0.0049 25.0 12.0 128 372-507 4-140 (273)
451 PF12926 MOZART2: Mitotic-spin 43.7 1.2E+02 0.0027 21.8 7.0 41 324-364 29-69 (88)
452 KOG4567 GTPase-activating prot 43.4 2.3E+02 0.005 26.3 8.8 43 187-229 264-306 (370)
453 KOG4567 GTPase-activating prot 43.4 2.8E+02 0.006 25.8 10.0 73 389-467 263-345 (370)
454 PF14689 SPOB_a: Sensor_kinase 43.2 59 0.0013 21.7 4.2 25 408-432 27-51 (62)
455 COG0735 Fur Fe2+/Zn2+ uptake r 42.8 1.3E+02 0.0029 24.4 7.0 62 391-454 8-69 (145)
456 PF11848 DUF3368: Domain of un 42.8 83 0.0018 19.6 5.1 32 381-412 14-45 (48)
457 TIGR02270 conserved hypothetic 41.5 3.6E+02 0.0079 26.6 24.2 176 302-494 99-274 (410)
458 PRK10564 maltose regulon perip 41.3 35 0.00075 31.4 3.7 37 168-204 259-295 (303)
459 KOG2908 26S proteasome regulat 41.1 1.6E+02 0.0036 27.6 7.7 53 76-128 83-143 (380)
460 PF11768 DUF3312: Protein of u 40.7 4.1E+02 0.0089 27.1 11.3 56 342-397 412-472 (545)
461 PF12862 Apc5: Anaphase-promot 40.3 1.5E+02 0.0032 21.8 7.9 21 412-432 49-69 (94)
462 PF14689 SPOB_a: Sensor_kinase 40.1 46 0.001 22.2 3.3 26 372-397 26-51 (62)
463 KOG3677 RNA polymerase I-assoc 39.9 2.2E+02 0.0049 27.6 8.6 60 305-364 237-298 (525)
464 smart00777 Mad3_BUB1_I Mad3/BU 39.1 1.9E+02 0.0042 22.8 7.2 40 491-530 82-123 (125)
465 PF14669 Asp_Glu_race_2: Putat 38.9 2.5E+02 0.0054 24.1 11.3 95 258-363 98-206 (233)
466 PF10255 Paf67: RNA polymerase 38.9 1.8E+02 0.0039 28.5 8.2 60 407-466 125-190 (404)
467 KOG2168 Cullins [Cell cycle co 38.8 5.4E+02 0.012 27.9 15.3 356 171-533 330-734 (835)
468 KOG2300 Uncharacterized conser 38.4 4.2E+02 0.0092 26.5 29.3 152 379-532 333-511 (629)
469 KOG0292 Vesicle coat complex C 38.2 35 0.00075 36.2 3.5 95 382-500 606-700 (1202)
470 KOG0686 COP9 signalosome, subu 38.1 3.9E+02 0.0085 26.0 13.3 88 341-430 153-255 (466)
471 COG0735 Fur Fe2+/Zn2+ uptake r 37.8 1.9E+02 0.0041 23.5 7.2 46 373-418 24-69 (145)
472 COG4941 Predicted RNA polymera 37.3 3.7E+02 0.0079 25.5 10.3 118 384-506 271-399 (415)
473 cd07153 Fur_like Ferric uptake 37.2 71 0.0015 24.5 4.5 49 7-55 5-53 (116)
474 PRK02287 hypothetical protein; 37.2 2.5E+02 0.0054 23.5 7.8 59 441-499 108-167 (171)
475 KOG2659 LisH motif-containing 37.1 3E+02 0.0064 24.4 9.0 54 411-465 71-128 (228)
476 TIGR02710 CRISPR-associated pr 37.0 4E+02 0.0087 25.9 11.2 53 377-429 138-196 (380)
477 PF07575 Nucleopor_Nup85: Nup8 36.8 37 0.00079 35.3 3.6 27 179-205 508-534 (566)
478 PF01475 FUR: Ferric uptake re 35.5 67 0.0014 24.9 4.2 50 6-55 11-60 (120)
479 KOG2581 26S proteasome regulat 35.3 2.9E+02 0.0064 26.8 8.6 135 403-538 125-279 (493)
480 KOG3824 Huntingtin interacting 35.2 51 0.0011 30.2 3.7 55 414-470 126-181 (472)
481 PF10255 Paf67: RNA polymerase 34.9 1.5E+02 0.0032 29.0 7.0 57 137-193 124-191 (404)
482 COG0790 FOG: TPR repeat, SEL1 34.8 3.7E+02 0.008 24.8 19.9 116 384-504 128-269 (292)
483 KOG0991 Replication factor C, 34.7 3.3E+02 0.0073 24.3 12.3 41 363-404 233-273 (333)
484 cd08332 CARD_CASP2 Caspase act 34.6 1.3E+02 0.0028 22.0 5.2 60 21-84 22-81 (90)
485 COG4259 Uncharacterized protei 34.3 1.5E+02 0.0032 22.1 5.1 39 493-531 58-97 (121)
486 PF06957 COPI_C: Coatomer (COP 34.1 1.5E+02 0.0033 29.1 6.9 45 461-505 287-333 (422)
487 PF10516 SHNi-TPR: SHNi-TPR; 33.8 88 0.0019 18.4 3.4 28 507-534 2-29 (38)
488 KOG2063 Vacuolar assembly/sort 33.5 6.9E+02 0.015 27.6 16.4 40 173-212 598-637 (877)
489 KOG0530 Protein farnesyltransf 33.2 3.8E+02 0.0082 24.4 8.6 168 348-518 53-233 (318)
490 PF09986 DUF2225: Uncharacteri 33.1 3.4E+02 0.0074 23.9 10.7 21 446-466 171-191 (214)
491 PF12796 Ank_2: Ankyrin repeat 32.3 1.8E+02 0.004 20.6 6.6 15 187-201 40-54 (89)
492 PRK11639 zinc uptake transcrip 31.8 2.1E+02 0.0045 24.0 6.7 59 396-456 18-76 (169)
493 PF12926 MOZART2: Mitotic-spin 31.4 1.3E+02 0.0029 21.7 4.4 42 23-64 29-70 (88)
494 COG5191 Uncharacterized conser 31.2 1.3E+02 0.0029 27.8 5.6 68 468-535 103-171 (435)
495 KOG2422 Uncharacterized conser 30.8 6.1E+02 0.013 26.1 15.4 82 439-521 338-431 (665)
496 PF02184 HAT: HAT (Half-A-TPR) 30.5 1.1E+02 0.0023 17.3 3.3 26 487-513 2-27 (32)
497 PRK13800 putative oxidoreducta 30.3 8.2E+02 0.018 27.4 27.0 268 156-450 625-894 (897)
498 PF11663 Toxin_YhaV: Toxin wit 30.1 35 0.00075 27.0 1.6 32 380-413 106-137 (140)
499 PF11817 Foie-gras_1: Foie gra 29.9 1.8E+02 0.0038 26.3 6.4 50 445-494 183-240 (247)
500 PRK14700 recombination factor 29.4 4.7E+02 0.01 24.4 9.0 47 270-317 126-175 (300)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-88 Score=721.25 Aligned_cols=571 Identities=38% Similarity=0.680 Sum_probs=553.5
Q ss_pred chHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCch-----------------------------------hHHHHHHHH
Q 047471 3 KSISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVI-----------------------------------VSNHVLNLY 47 (579)
Q Consensus 3 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------------~~~~l~~~~ 47 (579)
.+|+.++.+|++.|++++|.++|++|.+.|+.||.. +++.|+.+|
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 368888888888888888888888887777666544 557788889
Q ss_pred HccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcccC---CCHhhHHHHHHHHhccCChHHHHHHHH
Q 047471 48 AKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMHLL---PNEYIFASAISACAGIQSLVKGQQIHA 124 (579)
Q Consensus 48 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~ 124 (579)
+++|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|... ||..||+.++.+|++.|+.+.+.+++.
T Consensus 233 ~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred hcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877 999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccH
Q 047471 125 YSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSF 204 (579)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 204 (579)
.+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChH
Q 047471 205 AGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYE 284 (579)
Q Consensus 205 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 284 (579)
+.++.+|++.|+++.+.++++.+.+.|+.++..+++.|+.+|++.|++++|.++|+.|.++|..+|+.+|.+|++.|+.+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc
Q 047471 285 KGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM 364 (579)
Q Consensus 285 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 364 (579)
+|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+
T Consensus 473 eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 473 EALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 99999999974 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHH
Q 047471 365 LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFT 444 (579)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 444 (579)
.+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997779999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHH
Q 047471 445 CLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGD 524 (579)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 524 (579)
.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++++++|+++..|..|+++|.+.|+|++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCceEEEEcCeEEEEeecccCCcchhhHHHHHHhhh
Q 047471 525 VAGARKMLKDSGLKKEPSYSMIEVQGTFEKFTVAEFSHSKIGEINYMLKTLS 576 (579)
Q Consensus 525 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (579)
|.++.+.|.++|++++|+.|||++.+++|.|++|+++||+.++||.+|+.|.
T Consensus 710 a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-78 Score=632.01 Aligned_cols=511 Identities=30% Similarity=0.495 Sum_probs=501.5
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHcccC----CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHH
Q 047471 66 RNLVSWSAMISGHHQAGEHLLALEFFSQMHLL----PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSL 141 (579)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (579)
++..+|+.+|.++.+.|++++|+++|+.|... |+..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 46679999999999999999999999999764 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchh
Q 047471 142 ISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGM 221 (579)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 221 (579)
+.+|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC
Q 047471 222 ILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRP 301 (579)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 301 (579)
+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|+.|.++|..+||.++.+|++.|++++|+++|++|.+. |+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~p 323 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSI 323 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred CHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHh
Q 047471 302 DDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHAN 381 (579)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 381 (579)
|..||+.++.+|++.|+++.|.+++..|.+.|++||..+|+.|+.+|+++|++++|.++|++|.++|..+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 382 HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 382 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999878999999999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCC
Q 047471 462 YTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEP 541 (579)
Q Consensus 462 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 541 (579)
++++|+..|+..+|++++.+|..+|+++.|..+++++++++|++...|..++.+|.+.|+|++|.++++.|.++|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCeEEEEeecccCCcchhhHHHHHHhhhh
Q 047471 542 SYSMIEVQGTFEKFTVAEFSHSKIGEINYMLKTLSL 577 (579)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (579)
+.+|+++.+.+|.|++|+++||+..+||..|+.|..
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 599 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK 599 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988753
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-75 Score=618.68 Aligned_cols=532 Identities=28% Similarity=0.453 Sum_probs=484.0
Q ss_pred hHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCC
Q 047471 4 SISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGE 83 (579)
Q Consensus 4 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 83 (579)
+|..++.+|.+.+.++.+.+++..+.+.+..++...+|.|+..|++.|+++.|.++|++|++||..+|+.+|.+|++.|+
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~ 167 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC
Confidence 34445555555555555555555555555556666678889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcccC---CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhcc
Q 047471 84 HLLALEFFSQMHLL---PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGE 160 (579)
Q Consensus 84 ~~~a~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (579)
+++|+++|++|... ||..||+.++++|+..+++..+.+++..+.+.|+.|+..++++|+.+|++.|++++|.++|++
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 99999999999865 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHh
Q 047471 161 AFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGN 240 (579)
Q Consensus 161 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (579)
|..+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChH
Q 047471 241 TIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQ 320 (579)
Q Consensus 241 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (579)
.++.+|++.|++++|.++|+.|..+|..+|+.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047471 321 HGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGI 400 (579)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 400 (579)
.+.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHH
Q 047471 401 KPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLS 480 (579)
Q Consensus 401 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 480 (579)
+||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|.++|++++|.++|+.+ .||..+|+.++.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~ 562 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLT 562 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHH
Confidence 999999999999999999999999999999887 88888888888888888888888888888777 677777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC-CCCCccHHHHHHHHHcCCChHHHHHHHHHHH-hCCCCCC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQ-PTTTSPYVLLSNLYASDGMWGDVAGARKMLK-DSGLKKE 540 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 540 (579)
+|+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 8888888888888888777754 3346777777777777777777777777777 4566554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-66 Score=542.99 Aligned_cols=504 Identities=18% Similarity=0.255 Sum_probs=454.8
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcc-----cHHHHHHHHHhcCChHHHHHHHHHcccCCCHhhHHHHHH
Q 047471 34 QPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLV-----SWSAMISGHHQAGEHLLALEFFSQMHLLPNEYIFASAIS 108 (579)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~ 108 (579)
.++...|..++..+++.|++++|.++|++|.+++.. .++.++.+|.+.|..++|+.+++.|.. |+..+|+.++.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 466778888899999999999999999999875543 456677789999999999999999987 99999999999
Q ss_pred HHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC----CCCcchHHHHHHHHHhCCCcch
Q 047471 109 ACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF----EPNLVSFNALIAGFVENQQPEK 184 (579)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~ 184 (579)
+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999999999999999876 5899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHH--hCCCCChhHHhHHHHHHHhcCChhHHHHHHHhc
Q 047471 185 GFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVK--CKLESNPFVGNTIMALYSKFNLIGEAEKAFRLI 262 (579)
Q Consensus 185 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 262 (579)
|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.. .|+.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 678999999999999999999999999999999
Q ss_pred CC----CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCc
Q 047471 263 EE----KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDV 338 (579)
Q Consensus 263 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 338 (579)
.+ |+..+|+.+|.+|++.|++++|..+|++|.+. |+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 76 46689999999999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred chHhHHHHHHHhcCChHHHHHHHHcc----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047471 339 GVGNALVNMYAKCGLISCSYKLFNEM----LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC 414 (579)
Q Consensus 339 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 414 (579)
.+|+.+|.+|++.|++++|.++|++| ..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 46999999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH----hc-------------------CChHHHHHHHHhC---CC
Q 047471 415 NHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG----RA-------------------GKLLEAEEYTKKF---PL 468 (579)
Q Consensus 415 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~---~~ 468 (579)
++.|++++|.+++++|.+. |+.||..+|+.++..+. ++ +..++|..+|++| ..
T Consensus 765 ~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 9999999999999999987 99999999999986643 22 1246789999998 47
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCC
Q 047471 469 GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHL-QPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPS 542 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 542 (579)
.||..+|..++.+++..+....+...++.+... .+++..+|..+++.+.+. .++|..++++|.+.|+.|+..
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 899999999998777888888888888876643 366678999999987322 368999999999999987664
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-65 Score=536.06 Aligned_cols=496 Identities=16% Similarity=0.223 Sum_probs=468.5
Q ss_pred chHHHHHHHhhhhcchhHHHHHHHHHHHhcC-CCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhc
Q 047471 3 KSISSLLHHCSKTKALQQGISLHAAVLKMGI-QPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQA 81 (579)
Q Consensus 3 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (579)
..|..++..|.+.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 3578889999999999999999999999996 567888899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHcccC---CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHh
Q 047471 82 GEHLLALEFFSQMHLL---PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVY 158 (579)
Q Consensus 82 g~~~~a~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (579)
|++++|.++|+.|.+. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999887 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC----CCCcchHHHHHHHHHhCCCcchHHHHHHHHHH--CCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCC
Q 047471 159 GEAF----EPNLVSFNALIAGFVENQQPEKGFEVFKLMLR--QGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKL 232 (579)
Q Consensus 159 ~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 232 (579)
+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|+++.|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 8874 59999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred CCChhHHhHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHH
Q 047471 233 ESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE----KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFAS 308 (579)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 308 (579)
.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+. |+.||..+|+.
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Confidence 99999999999999999999999999999985 78899999999999999999999999999999 99999999999
Q ss_pred HHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc----CCCChhhHHHHHHHHHhcCC
Q 047471 309 ILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM----LHRNVVSWNTIIAAHANHRL 384 (579)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~ 384 (579)
+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++| ..||..+|+.++.+|++.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999 46999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------CCHHHHHHHHHHhHHHhCCCCChh
Q 047471 385 GGSALKLFEQMKATGIKPDSVTFIGLLTACNH----A-------------------GLVKEGEAYFNSMEKTYGISPDIE 441 (579)
Q Consensus 385 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~ 441 (579)
+++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.||..
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~ 848 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTME 848 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHH
Confidence 99999999999999999999999999876542 1 1246799999999998 9999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKFP---LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
+|+.++.++.+.+..+.+..+++.|. ..|+..+|+.++.++.+. .++|..++++|.+.+
T Consensus 849 T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 849 VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99999999989999999999999884 556789999999998432 468999999999977
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.4e-63 Score=513.41 Aligned_cols=432 Identities=27% Similarity=0.430 Sum_probs=420.0
Q ss_pred chHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcC
Q 047471 3 KSISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAG 82 (579)
Q Consensus 3 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 82 (579)
.+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHcccC---CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhc
Q 047471 83 EHLLALEFFSQMHLL---PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYG 159 (579)
Q Consensus 83 ~~~~a~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (579)
++++|+++|++|.+. |+..+|+.++.+|++.|+...+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHH
Q 047471 160 EAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVG 239 (579)
Q Consensus 160 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 239 (579)
+|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..++
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCCh
Q 047471 240 NTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASV 319 (579)
Q Consensus 240 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 319 (579)
+.|+.+|++.|++++|.++|+.|.++|..+||.||.+|++.|+.++|+++|++|.+. |+.||..||+.++.+|.+.|..
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLS 442 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCcH
Confidence 999999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHH-ccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047471 320 QHGKQIHAHLIR-MRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM-LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 320 ~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++| ..|+..+|++|+.+|...|+++.|..+++++.+
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 999999999986 699999999999999999999999999999999 579999999999999999999999999999976
Q ss_pred CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC
Q 047471 398 TGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP 438 (579)
Q Consensus 398 ~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 438 (579)
+.|+ ..+|..++..|++.|++++|.++++.|.++ |+..
T Consensus 523 --~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 523 --MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred --CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 4564 679999999999999999999999999987 8754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-33 Score=308.05 Aligned_cols=521 Identities=12% Similarity=0.057 Sum_probs=314.2
Q ss_pred hHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC--C-CcccHHHHHHHHHh
Q 047471 4 SISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--R-NLVSWSAMISGHHQ 80 (579)
Q Consensus 4 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 80 (579)
.+..+...+.+.|++++|...++.+.+..+ .+...+..+...+.+.|++++|...|+++.+ | +...|..+...+..
T Consensus 331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345566667777888888888877776553 4566777777777778888888887777654 2 34456666667777
Q ss_pred cCChHHHHHHHHHcccC-CC-HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHh
Q 047471 81 AGEHLLALEFFSQMHLL-PN-EYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVY 158 (579)
Q Consensus 81 ~g~~~~a~~~~~~~~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (579)
.|++++|++.++.+... |+ ......++..+.+.|+.++|.++++.+... .+++..++..+...|...|++++|...|
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 77777777777766555 32 234444555666677777777777666553 2345556666667777777777777776
Q ss_pred ccCC---CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCC
Q 047471 159 GEAF---EPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESN 235 (579)
Q Consensus 159 ~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 235 (579)
++.. +.+...+..+...+...|++++|...|+++.+.+ +.+..++..+...+...|+.+.|...+..+...+ +.+
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 6543 2334445556666666666767766666666542 2334455556666666666666666666665543 223
Q ss_pred hhHHhHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 047471 236 PFVGNTIMALYSKFNLIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAA 312 (579)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 312 (579)
...+..++..|...|++++|.++++.+.+ .+...|..+...+...|++++|...|+++.+. .+.+...+..+..+
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADA 644 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 44455566666666666666666666543 23445666666666666666666666666543 12234455555666
Q ss_pred HhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHH
Q 047471 313 CAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSAL 389 (579)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 389 (579)
+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|.
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666665543 34455556666666666666666666666532 23444555556666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-
Q 047471 390 KLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-P- 467 (579)
Q Consensus 390 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 467 (579)
..|+++... .|+..++..+..++...|++++|.+.++.+.+ ..+.+...+..+...|...|++++|.+.|+++ .
T Consensus 724 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 724 QAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 666666653 23334555555566666666666666666655 23445555566666666666666666666654 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 468 LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
.++++..+..+...+...|+ .+|+..++++++..|+++..+..++.++...|++++|.++++++.+.+
T Consensus 800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 22344555555566666665 556666666666666666666666666666666666666666665544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.2e-33 Score=302.67 Aligned_cols=517 Identities=12% Similarity=0.040 Sum_probs=251.9
Q ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC--C-CcccHHHHHHHHHhc
Q 047471 5 ISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--R-NLVSWSAMISGHHQA 81 (579)
Q Consensus 5 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 81 (579)
+..+...+.+.|++++|.++|+.+.+..+ .+...+..+...+...|++++|.+.|+.+.+ | +...+..++..+.+.
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 34444445555555555555555544331 2333444455555555555555555554432 1 122333444455555
Q ss_pred CChHHHHHHHHHcccC--CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhc
Q 047471 82 GEHLLALEFFSQMHLL--PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYG 159 (579)
Q Consensus 82 g~~~~a~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (579)
|++++|+.+++.+... ++..++..+...+...|+.++|.+.++.+.+.. +.+...+..+...+...|++++|...++
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555443 233344555555555555555555555554432 1223344444555555555555555554
Q ss_pred cCC---CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCCh
Q 047471 160 EAF---EPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNP 236 (579)
Q Consensus 160 ~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 236 (579)
++. +.+..++..+...+.+.|++++|...++++.+.+ +.+...+..+...+...|+++.|..+++.+.+.. +.+.
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 432 1233444445555555555555555555554432 2223344444455555555555555555544332 2334
Q ss_pred hHHhHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 047471 237 FVGNTIMALYSKFNLIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAAC 313 (579)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 313 (579)
.++..+..++...|++++|...|+.+.+ .+...+..+...+...|++++|...|+++.+. .+.+..++..+...+
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 4455555555555555555555554432 12334445555555555555555555555432 122344445555555
Q ss_pred hCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC--CCChhhHHHHHHHHHhcCChHHHHHH
Q 047471 314 AGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML--HRNVVSWNTIIAAHANHRLGGSALKL 391 (579)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (579)
...|+++.|..+++.+.+.. +.+...+..+...+.+.|++++|...|+.+. .|+..++..++.++.+.|++++|.+.
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555555554443 3344444445555555555555555555542 23334444455555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 047471 392 FEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ 470 (579)
Q Consensus 392 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 470 (579)
++++.+.. +.+...+..+...|...|++++|...|+++.+. .+++...++.++..+...|+ .+|+++++++ ...|
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 55555431 223444445555555555555555555555542 23344445555555555555 4455555543 2222
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 471 -DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 471 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
++..+..+...+...|++++|..+++++++.+|.++.++..++.++.+.|++++|.+++++|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555555555555555555555555554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4e-24 Score=234.17 Aligned_cols=518 Identities=11% Similarity=0.027 Sum_probs=271.9
Q ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC--CCcccH-----------
Q 047471 5 ISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--RNLVSW----------- 71 (579)
Q Consensus 5 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~----------- 71 (579)
+...++-+...++.+.|.+.++++....+ .++..+..++..+.+.|+.++|.+.++++.+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 34455667788899999999999888753 4677888888999999999999999998875 433222
Q ss_pred ------HHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHH--HHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHH
Q 047471 72 ------SAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFA--SAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLI 142 (579)
Q Consensus 72 ------~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (579)
..+.+.+...|++++|+..|+++... |+..... .........|+.++|.+.++.+.+.. +.+...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22344678889999999999998776 4433221 11222234688999999999988864 33566778888
Q ss_pred HHHHhcCChhHHHHHhccCCCCCc------ch-----------------HHHHHHHHHhCCCcchHHHHHHHHHHCCCCC
Q 047471 143 SMYMKVGYSSDALLVYGEAFEPNL------VS-----------------FNALIAGFVENQQPEKGFEVFKLMLRQGLLP 199 (579)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~------~~-----------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 199 (579)
..+...|+.++|+..++++..... .. +...+..+-.....+.|...+.........|
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 889999999999998877532110 00 1000000001111122222222222211111
Q ss_pred CcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC--CCc---chHH---
Q 047471 200 DRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE--KDL---ISWN--- 271 (579)
Q Consensus 200 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~--- 271 (579)
+... ......+...|+++.|...++..++.. +.+..++..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 269 ~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 269 AFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred chHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 1100 011223334444555555554444432 12334444444455555555555555444432 110 0011
Q ss_pred ---------HHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcch--
Q 047471 272 ---------TFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGV-- 340 (579)
Q Consensus 272 ---------~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 340 (579)
.....+.+.|++++|+..|++.... .+.+...+..+...+...|++++|++.|+++.+.. +.+...
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 1122334444555555555554433 11122333344444444555555555555444432 122222
Q ss_pred ----------------------------------------HhHHHHHHHhcCChHHHHHHHHccCC--C-ChhhHHHHHH
Q 047471 341 ----------------------------------------GNALVNMYAKCGLISCSYKLFNEMLH--R-NVVSWNTIIA 377 (579)
Q Consensus 341 ----------------------------------------~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 377 (579)
+..+...+...|++++|++.|++..+ | +...+..+..
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~ 503 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 23344445556666666666666632 2 2334555666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCCh---------hHHHHHH
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDI---------EHFTCLI 447 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~l~ 447 (579)
.|.+.|++++|...++++.+. .| +...+..+...+...++.++|...++.+... ...++. ..+..+.
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHH
Confidence 666667777777776666653 23 2333333333455566666666666654321 111110 0011223
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHH
Q 047471 448 DLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAG 527 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 527 (579)
..+...|+.++|.++++.- ++++..+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|++
T Consensus 581 ~~l~~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3344455555555554422 12333444455555556666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 047471 528 ARKMLKD 534 (579)
Q Consensus 528 ~~~~~~~ 534 (579)
.++.+.+
T Consensus 659 ~l~~ll~ 665 (1157)
T PRK11447 659 QLAKLPA 665 (1157)
T ss_pred HHHHHhc
Confidence 6665543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.1e-23 Score=230.66 Aligned_cols=511 Identities=10% Similarity=0.011 Sum_probs=350.7
Q ss_pred HHHHhhhhcchhHHHHHHHHHHHhcCCCCch-hHHHHHHHHHccCChhHHHHHhcccCC--C-CcccHHHHHHHHHhcCC
Q 047471 8 LLHHCSKTKALQQGISLHAAVLKMGIQPDVI-VSNHVLNLYAKCGKMILARKVFDEMSE--R-NLVSWSAMISGHHQAGE 83 (579)
Q Consensus 8 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 83 (579)
+...+.+.|++++|.+.|+.+.+.++ |+.. ............|+.++|++.|+++.+ | +...+..+...+...|+
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCC
Confidence 34467888999999999999988654 3332 111122223345899999999999875 3 45577788889999999
Q ss_pred hHHHHHHHHHcccCCCHh-----h-----------------HH----------------------------------HHH
Q 047471 84 HLLALEFFSQMHLLPNEY-----I-----------------FA----------------------------------SAI 107 (579)
Q Consensus 84 ~~~a~~~~~~~~~~p~~~-----~-----------------~~----------------------------------~ll 107 (579)
.++|+..++++...|... . +. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999998875432100 0 00 001
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CCc---chHH------------
Q 047471 108 SACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE--PNL---VSFN------------ 170 (579)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------ 170 (579)
..+...|++++|...++..++.. +.+..++..|..+|.+.|++++|+..|++..+ |+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 22344566667777666666543 22455666666677777777777776666432 211 1111
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcC
Q 047471 171 ALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFN 250 (579)
Q Consensus 171 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 250 (579)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|+++.|...++.+.+... .+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hc
Confidence 11234556677777777777766642 12233444555666667777777777776665532 22334444555553 34
Q ss_pred ChhHHHHHHHhcCCCC------------cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHhCcC
Q 047471 251 LIGEAEKAFRLIEEKD------------LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRP-DDFTFASILAACAGLA 317 (579)
Q Consensus 251 ~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~ 317 (579)
+.++|..+++.+.... ...+..+...+...|++++|+..|++..+. .| +...+..+...+.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 5666666666554321 122344556677889999999999988754 44 4456667778888899
Q ss_pred ChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCC----h---------hhHHHHHHHHHhcCC
Q 047471 318 SVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRN----V---------VSWNTIIAAHANHRL 384 (579)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~ 384 (579)
++++|...++.+.+.. +.++..+..+...+...++.++|...++.+.... . ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999887654 4455555555666777889999999988875321 1 112234567888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047471 385 GGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTK 464 (579)
Q Consensus 385 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (579)
+++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|.+.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998872 3445667778888899999999999999999984 45577889999999999999999999999
Q ss_pred hCC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------cHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 465 KFP-LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS------PYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 465 ~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.+. ..| ++.....+..++...|++++|.++++++++..|+++. .+..++.++...|++++|+..++....
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 873 444 4556677788888999999999999999998776553 566779999999999999999998864
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=3.4e-22 Score=209.05 Aligned_cols=419 Identities=7% Similarity=-0.067 Sum_probs=265.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-cCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchH
Q 047471 107 ISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMK-VGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKG 185 (579)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 185 (579)
.+.+.+.+++++|..++..+.+.+.. +......|..+|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHH
Confidence 56666777777777777777776533 34445556666666 355 7777776654456777788899999999999999
Q ss_pred HHHHHHHHHCCCC-CCcccHHHH------------------------------HHHhcccCcccchhHHH----------
Q 047471 186 FEVFKLMLRQGLL-PDRFSFAGG------------------------------LEICSVSNDLRKGMILH---------- 224 (579)
Q Consensus 186 ~~~~~~m~~~g~~-p~~~~~~~l------------------------------l~~~~~~~~~~~a~~~~---------- 224 (579)
..+++++...... |+..++..+ +..+.+.++++.+.++.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLE 346 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHH
Confidence 9999887653222 333333222 22223333333222221
Q ss_pred -------------------HHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC-C-Cc----chHHHHHHHHHh
Q 047471 225 -------------------CLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE-K-DL----ISWNTFIAACSH 279 (579)
Q Consensus 225 -------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~----~~~~~l~~~~~~ 279 (579)
..+.+. .+-+.....-+.-...+.|+.++|.++|+.... + +. ..-.-++..|.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 111110 011222233333445677888889888887765 2 11 123345555555
Q ss_pred CCC---hHHHHHH----------------------HHHhhhCCCCCC---CHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Q 047471 280 CAD---YEKGLSV----------------------FKEMSNDHGVRP---DDFTFASILAACAGLASVQHGKQIHAHLIR 331 (579)
Q Consensus 280 ~~~---~~~a~~~----------------------~~~m~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (579)
.+. ..++..+ ........+..| +...+..+..++.. ++.++|...+.....
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 544 2222222 222221112223 45555666655555 777778887777665
Q ss_pred ccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 047471 332 MRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFI 408 (579)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~ 408 (579)
.. |+......+...+...|++++|...|+++.. |+...+..+..++.+.|++++|...+++..+.+ |+ ...+.
T Consensus 505 ~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~ 580 (987)
T PRK09782 505 RQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYW 580 (987)
T ss_pred hC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHH
Confidence 53 4433333444555678888888888887632 444456666777788888888888888887753 33 33333
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRR 486 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 486 (579)
.+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++. ...| ++..+..+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 3344455668888888888888753 466777888888888888888888888876 4455 4556667777788888
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
+.++|+..++++++.+|+++..+..++.++...|++++|+..+++..+..
T Consensus 658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888876544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=4.2e-21 Score=200.96 Aligned_cols=509 Identities=9% Similarity=0.003 Sum_probs=358.8
Q ss_pred hhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC--CCcccHHHHHHHHHhcCChHHHHHHH
Q 047471 14 KTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--RNLVSWSAMISGHHQAGEHLLALEFF 91 (579)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~ 91 (579)
..|++++|...|+..++..+ -+..++..|...|.+.|++++|+..+++..+ |+-..|..++..+ ++.++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 45999999999999999875 3477889999999999999999999999876 4334444444222 8999999999
Q ss_pred HHcccC-CCHh-hHHHHHHHH-----hccCChHHHHHHHHHHHHhcCCCchhHHHHH-HHHHHhcCChhHHHHHhccCCC
Q 047471 92 SQMHLL-PNEY-IFASAISAC-----AGIQSLVKGQQIHAYSLKFGYASISFVGNSL-ISMYMKVGYSSDALLVYGEAFE 163 (579)
Q Consensus 92 ~~~~~~-p~~~-~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 163 (579)
+++... |+.. ++..+.... ....+.++|.+.++ .......|+..+.... ..+|.+.|++++|+.++.++.+
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 999888 6654 444444430 22334467777776 4334444456555555 8999999999999999988764
Q ss_pred C---CcchHHHHHHHHHh-CCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCC-CChhH
Q 047471 164 P---NLVSFNALIAGFVE-NQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLE-SNPFV 238 (579)
Q Consensus 164 ~---~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 238 (579)
. +......|...|.. .++ +++..+++. .++-+......+...+.+.|+.+.|...++.+...-.. |....
T Consensus 211 ~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 211 QNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred cCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 3 23335556667777 366 777777553 34456778888999999999999999888876544222 21111
Q ss_pred ------------------------------HhHHHHHHHhcCChhHHHHHHHhcCC------------------------
Q 047471 239 ------------------------------GNTIMALYSKFNLIGEAEKAFRLIEE------------------------ 264 (579)
Q Consensus 239 ------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------ 264 (579)
...++..+.+.+.++.++++...-..
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence 11235666777777766666432111
Q ss_pred -------C-CcchHHHHHHHHHhCCChHHHHHHHHHhhh-CCCCCCCHHHHHHHHHHHhCcCC-----------------
Q 047471 265 -------K-DLISWNTFIAACSHCADYEKGLSVFKEMSN-DHGVRPDDFTFASILAACAGLAS----------------- 318 (579)
Q Consensus 265 -------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~ll~~~~~~~~----------------- 318 (579)
| +......+.-...+.|+.++|.++|+.... .....++.....-++..+.+.+.
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 0 111122222335678999999999998876 21223334444455665554433
Q ss_pred --------hHHHHHHHHHHHHc-cC-CC--CcchHhHHHHHHHhcCChHHHHHHHHccC--CCChhhHHHHHHHHHhcCC
Q 047471 319 --------VQHGKQIHAHLIRM-RL-NQ--DVGVGNALVNMYAKCGLISCSYKLFNEML--HRNVVSWNTIIAAHANHRL 384 (579)
Q Consensus 319 --------~~~a~~~~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 384 (579)
...+...+...... +. ++ +...+..+..++.. +++++|...+.+.. .|+......+...+...|+
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr 524 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVED 524 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCC
Confidence 22223333333332 22 44 56777888888877 89999999888874 3543333333444568999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047471 385 GGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTK 464 (579)
Q Consensus 385 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (579)
+++|...|+++... +|+...+..+..++...|+.++|...++...+. .+++...+..+.....+.|++++|...++
T Consensus 525 ~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 525 YATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998663 455555667777889999999999999999874 23333344444445556799999999999
Q ss_pred hC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 465 KF-PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 465 ~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
+. ...|+...+..+...+.+.|++++|+..++++++++|+++..+..++.++...|++++|+..+++..+..+
T Consensus 601 ~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 601 RSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 86 56788888999999999999999999999999999999999999999999999999999999999887543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-21 Score=179.90 Aligned_cols=441 Identities=13% Similarity=0.120 Sum_probs=351.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHHH-HHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 047471 71 WSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASAI-SACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKV 148 (579)
Q Consensus 71 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (579)
...|..-..+.|++.+|.+.-...-.. |+..--..++ ..+.+..+.+...+.-...++. .+.-.++|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 344555566788888888876665544 4433222233 3345555555544433333332 222456888899999999
Q ss_pred CChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHH-HHHHHhcccCcccchhHHH
Q 047471 149 GYSSDALLVYGEAFE---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFA-GGLEICSVSNDLRKGMILH 224 (579)
Q Consensus 149 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~ 224 (579)
|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+..... .+-......|.+.+|..-+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999988653 4567888899999999999999999998877 457655433 3333445678888888888
Q ss_pred HHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC
Q 047471 225 CLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKD---LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRP 301 (579)
Q Consensus 225 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p 301 (579)
...+.... .-..+|+.|...+-..|++..|+..|++..+-| ..+|-.|...|...+.+++|+..|.+... ..|
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrp 283 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRP 283 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCC
Confidence 77766543 345678889999999999999999999988744 35788888999999999999999999874 466
Q ss_pred C-HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHH
Q 047471 302 D-DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIA 377 (579)
Q Consensus 302 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 377 (579)
+ ...+..+...|..+|.++.|+..+++..+.. |.-+..|+.+..++-..|++.+|.+.|.+.+. ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 5 4567777778889999999999999999875 55578999999999999999999999999843 34567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLLGRAGK 455 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 455 (579)
.|...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|+..+++.++ +.|+ ...++.+...|-..|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999988 6776 56788899999999999999999999985 4665 5788999999999999
Q ss_pred hHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHH
Q 047471 456 LLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGD 524 (579)
Q Consensus 456 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 524 (579)
.+.|...+.+. ..+|. ...++.|...+...|+..+|+..++.+++++|+.|..|..++.++.--.+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999988886 56664 46788999999999999999999999999999999999999998887777665
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=2.3e-19 Score=184.85 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=199.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHH
Q 047471 280 CADYEKGLSVFKEMSNDHGVRP-DDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSY 358 (579)
Q Consensus 280 ~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 358 (579)
.+++++|...|++........| ....+..+...+...|++++|...++...+.. +.....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4678889999988876512234 34556667777788899999999999888764 344567778888888999999999
Q ss_pred HHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh
Q 047471 359 KLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY 434 (579)
Q Consensus 359 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 434 (579)
..|+++.+ .+...|..+...+...|++++|...|++..+. .| +...+..+...+.+.|++++|+..+++..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99998743 34678888889999999999999999999885 44 466777788889999999999999999987
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh-hh-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 435 GISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDP-IV-------LGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 435 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
..+.+...++.+..++...|++++|.+.|++. ...|+. .. ++.....+...|++++|..+++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34556788889999999999999999999885 444431 11 1111222334699999999999999999999
Q ss_pred CccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 506 TSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 506 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
...+..++.++.+.|++++|++.+++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 889999999999999999999999998654
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=6e-20 Score=171.17 Aligned_cols=419 Identities=10% Similarity=0.089 Sum_probs=337.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCCc
Q 047471 106 AISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF---EPNLVSFNALIAGFVENQQP 182 (579)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~ 182 (579)
+..-..+.|++.+|++.-..+-..+ +.+....-.+-..+....+++....--.... ..-..+|..+.+.+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344557788888887655544332 1122222333355666666665443322222 23456899999999999999
Q ss_pred chHHHHHHHHHHCCCCCC-cccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChh-HHhHHHHHHHhcCChhHHHHHHH
Q 047471 183 EKGFEVFKLMLRQGLLPD-RFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPF-VGNTIMALYSKFNLIGEAEKAFR 260 (579)
Q Consensus 183 ~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~ 260 (579)
++|+.+++.+.+. +|+ ...|..+..++...|+.+.|...|.+.++.+ |+.. +.+.+.......|++.+|...+.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999985 454 5678889999999999999999998887754 3333 33456667777899999999888
Q ss_pred hcCCCC---cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCC
Q 047471 261 LIEEKD---LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQ 336 (579)
Q Consensus 261 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (579)
+..+.+ .++|+.|...+...|+...|++.|++..+ +.|+ ...|..+...+...+.++.|...+.+..... +.
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 776532 46899999999999999999999999984 4565 3567888888888999999999998887654 55
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCC--CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLH--RN-VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLT 412 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 412 (579)
...++..+...|-..|.++-|++.|++.++ |+ +..|+.|..++-..|++.+|...+.+... ..|+ ....+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 567777888889999999999999999954 43 45899999999999999999999999998 4565 778889999
Q ss_pred HHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHH
Q 047471 413 ACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 490 (579)
.+...|.+++|..+|....+ -.+--...++.|...|-..|++++|+.-+++. +++|. ...++.+...|...|+...
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 99999999999999999986 33334567899999999999999999999886 67775 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 491 GERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
|.+.+.+++..+|.-.+....|+.+|...|+..+|+.-++...+..+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999876543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=5.5e-20 Score=180.22 Aligned_cols=295 Identities=10% Similarity=0.037 Sum_probs=223.5
Q ss_pred HHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHhCcC
Q 047471 244 ALYSKFNLIGEAEKAFRLIEEK---DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD---DFTFASILAACAGLA 317 (579)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~ 317 (579)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+... +..++ ...+..+...+.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445667777777777777642 3345677777777888888888888877655 32221 245666777777888
Q ss_pred ChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--CC------hhhHHHHHHHHHhcCChHHHH
Q 047471 318 SVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--RN------VVSWNTIIAAHANHRLGGSAL 389 (579)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~ 389 (579)
+++.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888877653 44566777788888888888888888887743 21 113456777888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 047471 390 KLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL 468 (579)
Q Consensus 390 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 468 (579)
..|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .-......+..++.+|...|++++|...++++ ..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998853 224667778888899999999999999999874 21122456788999999999999999999987 45
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCCCCc
Q 047471 469 GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS---DGMWGDVAGARKMLKDSGLKKEPSY 543 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 543 (579)
.|+...+..++..+.+.|++++|..+++++++..|+++ .+..+...+.. .|+..++...++.|.++++.++|.+
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 67777778888899999999999999999999999876 44444544443 5689999999999999999999984
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.5e-18 Score=167.83 Aligned_cols=522 Identities=14% Similarity=0.080 Sum_probs=345.7
Q ss_pred HHHHHHhh--hhcchhHHHHHHHHHHHhcC--CCCchhHHHHHHHHHccCChhHHHHHhcccCCC---------------
Q 047471 6 SSLLHHCS--KTKALQQGISLHAAVLKMGI--QPDVIVSNHVLNLYAKCGKMILARKVFDEMSER--------------- 66 (579)
Q Consensus 6 ~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------- 66 (579)
..|..+|. ..+++..|..+|..++...+ +||+.+ .+..++.+.|+.+.|+..|.+..+-
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 33444544 45788889999988776544 344433 4446667778777777777665542
Q ss_pred -------------------------CcccHHHHHHHHHhcCChHHHHHHHHHcccC-----CCHhhHHHHHHHHhccCCh
Q 047471 67 -------------------------NLVSWSAMISGHHQAGEHLLALEFFSQMHLL-----PNEYIFASAISACAGIQSL 116 (579)
Q Consensus 67 -------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----p~~~~~~~ll~~~~~~~~~ 116 (579)
|+...+.|.+-|...|++..+..+...+... .-...|..+.+++...|++
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 4444555556666667777777776666544 1223466677777777777
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhCC----CcchHHHHH
Q 047471 117 VKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE--P-NLVSFNALIAGFVENQ----QPEKGFEVF 189 (579)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~ 189 (579)
++|...+....+.........+-.|..+|.+.|+++.+...|+++.. | +..+..+|...|...+ ..+.|..++
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 77777777666543222223344566777777777777777777543 2 2333344444444443 345555555
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHH----HHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC-
Q 047471 190 KLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHC----LTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE- 264 (579)
Q Consensus 190 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 264 (579)
....+.- +.|...|..+-..+.... ...+...+. .+...+..+.+.+.|.+...+...|++..|...|.....
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 5554431 233344444444444333 333344443 334556667788888888888888998888888876543
Q ss_pred ------CCcc------hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHhCcCChHHHHHHHHHHHH
Q 047471 265 ------KDLI------SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDF-TFASILAACAGLASVQHGKQIHAHLIR 331 (579)
Q Consensus 265 ------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (579)
++.. +--.+...+-..++.+.|.+.|..+.+. .|+-. .|.-+.......++..+|...+..+..
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 1221 1122344455567888888888888765 45543 333333333445778888888888877
Q ss_pred ccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC-----CCChhhHHHHHHHHHh------------cCChHHHHHHHHH
Q 047471 332 MRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML-----HRNVVSWNTIIAAHAN------------HRLGGSALKLFEQ 394 (579)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~ 394 (579)
.+ ..++.....+...|.+..++..|.+-|+.+. .+|+.+.-+|.+.|.+ .+..++|+++|.+
T Consensus 559 ~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 559 ID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred cc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 65 5566666767778888888888888666552 2344444445554432 2456789999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC
Q 047471 395 MKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF----PLGQ 470 (579)
Q Consensus 395 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p 470 (579)
..+.. +-|...-+.+.-.++..|++.+|..+|.++.+. ......+|-.+..+|..+|++..|+++|+.. -.+.
T Consensus 638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 88853 337788888888899999999999999999985 2345567888999999999999999999885 2345
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC-------------------CChHHHHHHHHH
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD-------------------GMWGDVAGARKM 531 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~ 531 (579)
++.+.+.|..++...|.+.+|.+.+..+..+.|.++..-+.++.+..+. +..+.|.++|..
T Consensus 715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ 794 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTE 794 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999998877776655443 346677888888
Q ss_pred HHhCCCC
Q 047471 532 LKDSGLK 538 (579)
Q Consensus 532 ~~~~~~~ 538 (579)
|.+.+.+
T Consensus 795 ls~~~d~ 801 (1018)
T KOG2002|consen 795 LSKNGDK 801 (1018)
T ss_pred HHhcCCC
Confidence 8766544
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=4.3e-18 Score=175.52 Aligned_cols=229 Identities=11% Similarity=0.048 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHH
Q 047471 269 SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNM 347 (579)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 347 (579)
.|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...++.+.+.. +.++.++..+...
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL---DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444455555566666666666665532 333 3345555555566666666666666665543 3445566666666
Q ss_pred HHhcCChHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047471 348 YAKCGLISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 424 (579)
+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+. .+.+...+..+...+...|++++|.
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHH
Confidence 7777777777777776632 2 3445566667777778888888888877764 1224666777777777888888888
Q ss_pred HHHHHhHHHhCCCCC-hh-------HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 047471 425 AYFNSMEKTYGISPD-IE-------HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERL 494 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~ 494 (579)
..|++..+. .|+ .. .++.....+...|++++|.+++++. ...|+ ...+..+...+...|++++|+..
T Consensus 488 ~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 488 EKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 888877653 221 11 1111222333468888888888774 44453 34567777788888888888888
Q ss_pred HHHHHhcCCCC
Q 047471 495 AKQLFHLQPTT 505 (579)
Q Consensus 495 ~~~~~~~~p~~ 505 (579)
|+++.++.+..
T Consensus 565 ~e~A~~l~~~~ 575 (615)
T TIGR00990 565 FERAAELARTE 575 (615)
T ss_pred HHHHHHHhccH
Confidence 88888877653
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=9.4e-18 Score=172.26 Aligned_cols=350 Identities=7% Similarity=-0.049 Sum_probs=266.0
Q ss_pred hcCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccch
Q 047471 147 KVGYSSDALLVYGEAFE------PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKG 220 (579)
Q Consensus 147 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 220 (579)
+..+++.-.-.|...++ .+......++..+.+.|++++|..+++........+ ...+..+..++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 45555555555544332 122334556777888899999999988888763322 23444455566678899999
Q ss_pred hHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCC
Q 047471 221 MILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDH 297 (579)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 297 (579)
...++.+..... .+...+..+...+...|++++|...++.... | +...+..+...+...|++++|...++.+...
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~- 173 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE- 173 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-
Confidence 999888887643 3456678888899999999999999998865 3 4567888899999999999999999988655
Q ss_pred CCCCCH-HHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHH
Q 047471 298 GVRPDD-FTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWN 373 (579)
Q Consensus 298 ~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 373 (579)
.|+. ..+.. +..+...|++++|...++.+.+....++......+...+...|++++|...|+++.. .+...+.
T Consensus 174 --~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 174 --VPPRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred --CCCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 2332 23323 334778899999999999987765334444555567788899999999999999843 3456778
Q ss_pred HHHHHHHhcCChHH----HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 374 TIIAAHANHRLGGS----ALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 374 ~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
.+...+...|++++ |...|++..+. .| +...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~ 326 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 88899999999986 89999999884 45 4678888888999999999999999999874 3445667778899
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 449 LLGRAGKLLEAEEYTKKF-PLGQDPIV-LGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
++.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...|+++++..|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999887 35565544 33456678889999999999999999998864
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.9e-17 Score=172.44 Aligned_cols=392 Identities=10% Similarity=0.014 Sum_probs=183.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHccc-C-CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 047471 73 AMISGHHQAGEHLLALEFFSQMHL-L-PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGY 150 (579)
Q Consensus 73 ~l~~~~~~~g~~~~a~~~~~~~~~-~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (579)
-.+......|+.++|++++++... . .+...+..+..++...|++++|.+.++..++.. +.+...+..+..++...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 344455566666666666666554 2 222245555555555555555555555555432 1223334444455555555
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHH
Q 047471 151 SSDALLVYGEAFE---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLT 227 (579)
Q Consensus 151 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 227 (579)
+++|+..+++... .+.. +..+...+...|++++|+..++++.+. .|+
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~--------------------------- 148 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ--------------------------- 148 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---------------------------
Confidence 5555555554321 2222 444444555555555555555555442 232
Q ss_pred HHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcc--------hHHHHHHHHH-----hCCCh---HHHHHHHH
Q 047471 228 VKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLI--------SWNTFIAACS-----HCADY---EKGLSVFK 291 (579)
Q Consensus 228 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~-----~~~~~---~~a~~~~~ 291 (579)
+...+..+..++...+..+.|.+.++.+.. ++. .....+.... ..+++ ++|++.++
T Consensus 149 -------~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 149 -------TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred -------CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 222223344455555566666666655544 110 1111111111 11222 55666666
Q ss_pred HhhhCCCCCCCHH-HHH----HHHHHHhCcCChHHHHHHHHHHHHccCC-CCcchHhHHHHHHHhcCChHHHHHHHHccC
Q 047471 292 EMSNDHGVRPDDF-TFA----SILAACAGLASVQHGKQIHAHLIRMRLN-QDVGVGNALVNMYAKCGLISCSYKLFNEML 365 (579)
Q Consensus 292 ~m~~~~~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 365 (579)
.+.+.....|+.. .+. ..+.++...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 6654312222221 110 1122334456666666666666655421 111 11123445566666666666666553
Q ss_pred CCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCCHHHHH
Q 047471 366 HRN-------VVSWNTIIAAHANHRLGGSALKLFEQMKATGI-----------KPDS---VTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 366 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~~~~~~a~ 424 (579)
+.+ ......+..++...|++++|...++++.+... .|+. ..+..+...+...|+.++|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 211 11233344455566666666666666554310 1121 12233344455555555555
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
+.++++.. ..+.+...+..++..+...|++++|++.+++. ...|+ ...+...+..+...|++++|+..++++++..
T Consensus 380 ~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 380 MRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 55555554 23334445555555555555555555555554 23343 3333344444455555555555555555555
Q ss_pred CCCC
Q 047471 503 PTTT 506 (579)
Q Consensus 503 p~~~ 506 (579)
|+++
T Consensus 458 Pd~~ 461 (765)
T PRK10049 458 PQDP 461 (765)
T ss_pred CCCH
Confidence 5554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.2e-17 Score=175.27 Aligned_cols=394 Identities=9% Similarity=-0.040 Sum_probs=262.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHh
Q 047471 102 IFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF---EPNLVSFNALIAGFVE 178 (579)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 178 (579)
-..-.+......|+.++|.+++....... +.+...+..+...+...|++++|..+|++.. +.+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444444455555555555555544311 2223334555555555555555555555421 2223334444445555
Q ss_pred CCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHH
Q 047471 179 NQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKA 258 (579)
Q Consensus 179 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 258 (579)
.|++++|+..+++..+. .| .+.. +..+..++...|+.++|...
T Consensus 96 ~g~~~eA~~~l~~~l~~--~P----------------------------------~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--AP----------------------------------DKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred CCCHHHHHHHHHHHHHh--CC----------------------------------CCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 55555555555555443 12 2333 56777888899999999999
Q ss_pred HHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH------HHHHHHHHHHh-----CcCCh---HH
Q 047471 259 FRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD------FTFASILAACA-----GLASV---QH 321 (579)
Q Consensus 259 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~ 321 (579)
++++.+ | +...+..+..++...+..+.|+..++.... .|+. .....++.... ..+++ +.
T Consensus 139 l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 139 MTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 998876 3 445566778888889999999999987653 3332 11122222222 12234 67
Q ss_pred HHHHHHHHHHc-cCCCCcc-hHh-H---HHHHHHhcCChHHHHHHHHccCCCC---hh-hHHHHHHHHHhcCChHHHHHH
Q 047471 322 GKQIHAHLIRM-RLNQDVG-VGN-A---LVNMYAKCGLISCSYKLFNEMLHRN---VV-SWNTIIAAHANHRLGGSALKL 391 (579)
Q Consensus 322 a~~~~~~~~~~-~~~~~~~-~~~-~---li~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~ 391 (579)
|...++.+.+. ...|+.. .+. . .+..+...|++++|+..|+.+.+.+ +. ....+...|...|++++|+..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 88888888764 2223221 111 1 1234567799999999999996532 21 222357789999999999999
Q ss_pred HHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhC----------CCCC---hhHHHHHHHHHHhcCC
Q 047471 392 FEQMKATGIKP---DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYG----------ISPD---IEHFTCLIDLLGRAGK 455 (579)
Q Consensus 392 ~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~ 455 (579)
|+++.+..... .......+..++...|++++|...++.+.+... -.|+ ...+..++..+...|+
T Consensus 295 l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~ 374 (765)
T PRK10049 295 LTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND 374 (765)
T ss_pred HHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence 99988743211 134456666778999999999999999987410 0122 2345567788999999
Q ss_pred hHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 456 LLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 456 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
+++|++.++++ ...| ++..+..+...+...|++++|++.++++++++|+++..+..++.++.+.|++++|...++.+.
T Consensus 375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999997 3344 667888888899999999999999999999999999999999999999999999999999998
Q ss_pred hCCC
Q 047471 534 DSGL 537 (579)
Q Consensus 534 ~~~~ 537 (579)
+..+
T Consensus 455 ~~~P 458 (765)
T PRK10049 455 AREP 458 (765)
T ss_pred HhCC
Confidence 7543
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.3e-18 Score=170.60 Aligned_cols=296 Identities=10% Similarity=0.038 Sum_probs=155.5
Q ss_pred HHHhcCChHHHHHHHHHcccC-CCH-hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCh
Q 047471 77 GHHQAGEHLLALEFFSQMHLL-PNE-YIFASAISACAGIQSLVKGQQIHAYSLKFGYASI---SFVGNSLISMYMKVGYS 151 (579)
Q Consensus 77 ~~~~~g~~~~a~~~~~~~~~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 151 (579)
.+...|++++|+..|+++... |+. .++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345556666666666666555 332 3455555555666666666666665555332111 23456667777777777
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHH
Q 047471 152 SDALLVYGEAFE---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTV 228 (579)
Q Consensus 152 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 228 (579)
++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------- 178 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------------
Confidence 777777776543 3455677777777777777777777777766432111100
Q ss_pred HhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHH
Q 047471 229 KCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFT 305 (579)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 305 (579)
....+..+...+.+.|++++|.+.|+++.+ | +...+..+...+.+.|++++|.++|+++... +......+
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 251 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHH
Confidence 001123344455555566666555555443 1 2334455555666666666666666666543 11111233
Q ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCCh
Q 047471 306 FASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLG 385 (579)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (579)
+..+..++...|++++|...++.+.+.. |+...+..++..+.+.|++
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~---------------------------------p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY---------------------------------PGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------CCchHHHHHHHHHHHhCCH
Confidence 4444555555555555555555544432 3333334444555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhHHHhCCCCCh
Q 047471 386 GSALKLFEQMKATGIKPDSVTFIGLLTACNH---AGLVKEGEAYFNSMEKTYGISPDI 440 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 440 (579)
++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.++ ++.|++
T Consensus 299 ~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 299 EAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred HHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 5555555555542 4555555544444332 23455555555555544 444443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.8e-16 Score=163.02 Aligned_cols=442 Identities=11% Similarity=0.018 Sum_probs=294.4
Q ss_pred HHHHHHccCChhHHHHHhcccCC--CCcc-cHHHHHHHHHhcCChHHHHHHHHHcccCCCHh-hHHHH--HHHHhccCCh
Q 047471 43 VLNLYAKCGKMILARKVFDEMSE--RNLV-SWSAMISGHHQAGEHLLALEFFSQMHLLPNEY-IFASA--ISACAGIQSL 116 (579)
Q Consensus 43 l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~-~~~~l--l~~~~~~~~~ 116 (579)
-+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCH
Confidence 34455677888888888887765 3321 23367777777788888888888877 33222 22222 4456677888
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHh--CCCcchHHHHHHHHHH
Q 047471 117 VKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVE--NQQPEKGFEVFKLMLR 194 (579)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~ 194 (579)
++|.++++.+++.... +...+..++..|...++.++|+..+++..+.+......+..++.. .++..+|+..++++.+
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 8888888888775533 355666778888899999999999988765333332223334443 5556569999999988
Q ss_pred CCCCCC-cccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHH
Q 047471 195 QGLLPD-RFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTF 273 (579)
Q Consensus 195 ~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 273 (579)
. .|+ ...+..++.++.+.|-...|.++...- |+..+-...... ..+.+.+..+....++..- .
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~-~-- 261 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRSE-T-- 261 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccccc-h--
Confidence 6 354 344555666666666665555544331 111111110000 0112222221111110000 0
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCCHH-----HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHH
Q 047471 274 IAACSHCADYEKGLSVFKEMSNDHGVRPDDF-----TFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMY 348 (579)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 348 (579)
. +---.+.|+.-++.+....+..|... ...-.+-++...|+..++.+.++.+...+.+....+-..+.++|
T Consensus 262 -~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 262 -E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred -h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 0 00023556666666665323334321 22234557788899999999999999888765666778899999
Q ss_pred HhcCChHHHHHHHHccCCC---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CCCH-H
Q 047471 349 AKCGLISCSYKLFNEMLHR---------NVVSWNTIIAAHANHRLGGSALKLFEQMKATGI-------------KPDS-V 405 (579)
Q Consensus 349 ~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------------~p~~-~ 405 (579)
...+++++|+.+|+.+..+ +......|.-+|...+++++|..+++++.+.-. .||- .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 9999999999999988432 222346788899999999999999999987311 1222 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 047471 406 TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACR 483 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 483 (579)
.+..++..+...|+..+|++.++++.. .-|-|......+.+.+...|.+.+|.+.++.. ...| +..+....+.+..
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 344556678899999999999999987 56778889999999999999999999999876 3455 4566677788888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
..+++.+|..+.+.+.+..|+++..
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8999999999999999999998743
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.9e-17 Score=167.77 Aligned_cols=353 Identities=10% Similarity=-0.051 Sum_probs=277.6
Q ss_pred HHhCCCcchHHHHHHHHHHC--CCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChh
Q 047471 176 FVENQQPEKGFEVFKLMLRQ--GLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIG 253 (579)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 253 (579)
+.++.+|+.-.-.|..-.++ .-.-+..-...++..+.+.|+.+.|..+++........... ....++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHH
Confidence 34556666555555443321 11123334556777888999999999999999887665544 4445556677799999
Q ss_pred HHHHHHHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHHHHHHH
Q 047471 254 EAEKAFRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQIHAHL 329 (579)
Q Consensus 254 ~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (579)
+|...|+.+.. | +...+..+...+...|++++|+..+++.... .|+ ...+..+...+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l---~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA---FSGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999875 3 4567888889999999999999999999854 444 567778888999999999999999988
Q ss_pred HHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047471 330 IRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHR----NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSV 405 (579)
Q Consensus 330 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 405 (579)
.... +.+...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+..
T Consensus 171 ~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 7665 2333344333 3478899999999999998543 23344555678899999999999999999853 33577
Q ss_pred HHHHHHHHHhccCCHHH----HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHH
Q 047471 406 TFIGLLTACNHAGLVKE----GEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLL 479 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 479 (579)
.+..+...+...|++++ |...++++.+. .+.+...+..+...+...|++++|...+++. ...| ++..+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77888888999999986 89999999873 4556778899999999999999999999987 4455 456677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
.++...|++++|...++++.+.+|+++..+..++.++...|+.++|...++...+..+
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8899999999999999999999999887777788999999999999999999876644
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=7.1e-16 Score=151.88 Aligned_cols=510 Identities=13% Similarity=0.070 Sum_probs=328.6
Q ss_pred hhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC--CCcc--cHHHHHHHHHhcCChHHHHHHHHH
Q 047471 18 LQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--RNLV--SWSAMISGHHQAGEHLLALEFFSQ 93 (579)
Q Consensus 18 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 93 (579)
++.|.+.|....+..+ +++...---.......|++-.|+.+|..... |... ..-.+..++.+.|+.+.|+..|++
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 5788888888887763 4444433333444566899999999998543 2221 122344667788999999999999
Q ss_pred cccC-CCHhh-HHHHHHHHh---ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCC---
Q 047471 94 MHLL-PNEYI-FASAISACA---GIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPN--- 165 (579)
Q Consensus 94 ~~~~-p~~~~-~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 165 (579)
..+. |+... +..|-..-. ....+..+...+....... ..++.+.+.|.+.|.-.|++..+..+...+...+
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 8887 64332 222211111 2233444555555444322 3466777888888888999988888876654322
Q ss_pred ---cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCccc--HHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHh
Q 047471 166 ---LVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFS--FAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGN 240 (579)
Q Consensus 166 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (579)
..+|-.+.++|-..|++++|...|.+..+. .||.++ +.-+...+...|+++.+...|+.+.+.. +.+..+..
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 234667888888899999999988777654 455543 3455667788888888888888887764 33455666
Q ss_pred HHHHHHHhcC----ChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCChHHHHHHHHHhh----hCCCCCCCHHHHHHH
Q 047471 241 TIMALYSKFN----LIGEAEKAFRLIEEK---DLISWNTFIAACSHCADYEKGLSVFKEMS----NDHGVRPDDFTFASI 309 (579)
Q Consensus 241 ~l~~~~~~~~----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~p~~~~~~~l 309 (579)
.|...|...+ ..+.|..++....++ |...|-.+...+....- ..++..|.... .. +-.+.....+.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~-~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESK-GKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHc-CCCCCHHHHHhH
Confidence 6667776664 345666666665553 34455555555544333 33355544332 33 444666667777
Q ss_pred HHHHhCcCChHHHHHHHHHHHHc---cCCCCc------chHhHHHHHHHhcCChHHHHHHHHccCC--------------
Q 047471 310 LAACAGLASVQHGKQIHAHLIRM---RLNQDV------GVGNALVNMYAKCGLISCSYKLFNEMLH-------------- 366 (579)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------- 366 (579)
.......|+++.|...|...... ...++. .+-..+..++...++.+.|.+.|..+.+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 77777777777777777766644 112222 1222244444445555566665555532
Q ss_pred -----------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------
Q 047471 367 -----------------------RNVVSWNTIIAAHANHRLGGSALKLFEQMKAT-GIKPDSVTFIGLLTACNH------ 416 (579)
Q Consensus 367 -----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~------ 416 (579)
.++..++.+...+.....+..|.+-|+...+. ...+|..+...|.+.|..
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~ 618 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPS 618 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccc
Confidence 23444444445555555555555544444331 122455555555554432
Q ss_pred ------cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCH
Q 047471 417 ------AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRLRRDV 488 (579)
Q Consensus 417 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 488 (579)
.+..++|+++|.++++ ..+.|...-+-+.-.++..|++.+|..+|..+. ......+|..+...|...|++
T Consensus 619 rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 619 RNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 2346778888888877 556677777888889999999999999999873 334678899999999999999
Q ss_pred HHHHHHHHHHHhcC--CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 489 VIGERLAKQLFHLQ--PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 489 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
..|++.|+..++.. .+++.+...|+.++.+.|.+.+|.+.+.......
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999998854 4567788899999999999999999888776553
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.7e-14 Score=148.63 Aligned_cols=434 Identities=10% Similarity=0.008 Sum_probs=263.8
Q ss_pred HHHhcCChHHHHHHHHHcccC-CCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHH
Q 047471 77 GHHQAGEHLLALEFFSQMHLL-PNEY-IFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDA 154 (579)
Q Consensus 77 ~~~~~g~~~~a~~~~~~~~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (579)
...+.|+++.|++.|++..+. |+.. ....++..+...|+.++|...++.... ....+......+...|...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456777777888777777665 5542 222666666666777777777666661 1111122223334566666777777
Q ss_pred HHHhccCCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhC
Q 047471 155 LLVYGEAFE---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCK 231 (579)
Q Consensus 155 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 231 (579)
+++|+++.+ .+...+..++..+...++.++|++.++++... .|+...+..+...+...++...|...++++.+..
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 777766542 22344555556666667777777777766553 3444344222222222233323555555554443
Q ss_pred CCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 047471 232 LESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILA 311 (579)
Q Consensus 232 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 311 (579)
+.+...+..+..+..+.|-...|.++...-++ ..+-..... =+.+.|.+..+.. ..|+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a~~vr~a-----~~~~~-------- 258 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAAEQVRMA-----VLPTR-------- 258 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHHHHHhhc-----ccccc--------
Confidence 22333334444444444444444444333221 000000000 0011111111110 00100
Q ss_pred HHhCcCC---hHHHHHHHHHHHHc-cC-CCCcchH-h---HHHHHHHhcCChHHHHHHHHccCCC----ChhhHHHHHHH
Q 047471 312 ACAGLAS---VQHGKQIHAHLIRM-RL-NQDVGVG-N---ALVNMYAKCGLISCSYKLFNEMLHR----NVVSWNTIIAA 378 (579)
Q Consensus 312 ~~~~~~~---~~~a~~~~~~~~~~-~~-~~~~~~~-~---~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~ 378 (579)
....+ .+.|..-++.+... +- |+....| . -.+-++...|++.++++.|+.+..+ ...+-..+.++
T Consensus 259 --~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 259 --SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred --cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 01112 33444444444432 11 2222222 2 2345677889999999999999642 23355678899
Q ss_pred HHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhC----------CCCCh---
Q 047471 379 HANHRLGGSALKLFEQMKATG-----IKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYG----------ISPDI--- 440 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~--- 440 (579)
|...+++++|..+++++.... ..++......|.-++...+++++|..+++.+.+... -.|+.
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 999999999999999997643 122344457788899999999999999999987311 01222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
..+..++..+...|++.+|++.++++ ...| |......+...+...|.+..|++.++.+..++|++..+....+.++..
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 23445677888999999999999998 3344 788889999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCC
Q 047471 519 DGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 519 ~g~~~~A~~~~~~~~~~~ 536 (579)
.|+|.+|..+.+.+.+..
T Consensus 497 l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 497 LQEWHQMELLTDDVISRS 514 (822)
T ss_pred hhhHHHHHHHHHHHHhhC
Confidence 999999999987776543
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=143.33 Aligned_cols=477 Identities=13% Similarity=0.042 Sum_probs=302.1
Q ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhH-HHHHHHHHccCChhHHHHHhcccCC--CC------cccHHHHH
Q 047471 5 ISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVS-NHVLNLYAKCGKMILARKVFDEMSE--RN------LVSWSAMI 75 (579)
Q Consensus 5 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~l~ 75 (579)
+..|.+.|..+....+|+..++.+.+...-|+.... -.+...+.+..++.+|++.++-... |+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 345555666666667777777776666655554432 2344556666667777666644322 21 12344444
Q ss_pred HHHHhcCChHHHHHHHHHcccC-CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHH
Q 047471 76 SGHHQAGEHLLALEFFSQMHLL-PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDA 154 (579)
Q Consensus 76 ~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (579)
-.+.+.|.++.|+.-|+...+. |+..+-..++-++...|+-++.++.|..++.....||..-|. +
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~------- 349 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------K------- 349 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------C-------
Confidence 5566677777777777666555 666555555555555666666666666666544444332110 0
Q ss_pred HHHhccCCCCCcchHHHH-----HHHHHhCC--CcchHHHHHHHHHHCCCCCCcc-cHHHHHHHhcccCcccchhHHHHH
Q 047471 155 LLVYGEAFEPNLVSFNAL-----IAGFVENQ--QPEKGFEVFKLMLRQGLLPDRF-SFAGGLEICSVSNDLRKGMILHCL 226 (579)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l-----i~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 226 (579)
.-..|+....|.- +...-+.+ +.++++-.--.++.--+.|+-. -+...+..+-.....+.|..+
T Consensus 350 -----~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl--- 421 (840)
T KOG2003|consen 350 -----EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL--- 421 (840)
T ss_pred -----CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---
Confidence 0001222222211 11111111 1222222222232222333321 122222222222222222111
Q ss_pred HHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHH-----HHHHHh-CCChHHHHHHHHHhhhCCCCC
Q 047471 227 TVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTF-----IAACSH-CADYEKGLSVFKEMSNDHGVR 300 (579)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-----~~~~~~-~~~~~~a~~~~~~m~~~~~~~ 300 (579)
. ..-...+.+.|+++.|.+++.-+.+.|..+-.+. +--|.+ -.++..|.+.-+...... .
T Consensus 422 ----------e--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--r 487 (840)
T KOG2003|consen 422 ----------E--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--R 487 (840)
T ss_pred ----------h--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--c
Confidence 0 1123357788999999999988887654432222 222233 345677777666655431 2
Q ss_pred CCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc---CCCChhhHHHHHH
Q 047471 301 PDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM---LHRNVVSWNTIIA 377 (579)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~ 377 (579)
-+......-.......|++++|.+.+++.....-......|| +.-.+...|++++|++.|-++ +..+..+...+.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 222222222333456789999999999998776444444444 334567789999999998876 4567777777888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLL 457 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 457 (579)
.|....+..+|++++-+.... ++.|+.....|...|-+.|+-..|.+.+-.--+ -++-+..+...|..-|....-++
T Consensus 567 iye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHH
Confidence 899999999999999887764 555788899999999999999999998776655 67778999999999999999999
Q ss_pred HHHHHHHhC-CCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 458 EAEEYTKKF-PLGQDPIVLGTLLSACR-LRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 458 ~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
++..+|++. -++|+..-|..++..|. +.|++.+|...++...+..|.+......|.++....|.
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999997 47899999999998875 47999999999999999999999999999999888874
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=5.3e-13 Score=126.21 Aligned_cols=512 Identities=9% Similarity=-0.017 Sum_probs=389.2
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcccC-C-
Q 047471 21 GISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMHLL-P- 98 (579)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p- 98 (579)
-.++++..+++- +.++..|. +.....+.++|..++.+..+--+ +-.-|.-+|.+..-++.|..++++.++. |
T Consensus 365 K~RVlRKALe~i-P~sv~LWK----aAVelE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~ipt 438 (913)
T KOG0495|consen 365 KKRVLRKALEHI-PRSVRLWK----AAVELEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREIIPT 438 (913)
T ss_pred HHHHHHHHHHhC-CchHHHHH----HHHhccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 345555555542 23444443 33445566678777777765111 1123445677778888999999998888 4
Q ss_pred CHhhHHHHHHHHhccCChHHHHHHHHHHH----HhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC------CCCcch
Q 047471 99 NEYIFASAISACAGIQSLVKGQQIHAYSL----KFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF------EPNLVS 168 (579)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~ 168 (579)
+...|.+....=-..|+.+...++++..+ ..|+..+..-|..=...+-+.|..-.+..+..... +.-..+
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 45567666666667888888887776554 46777888877777777777777777776665532 123457
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHh
Q 047471 169 FNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSK 248 (579)
Q Consensus 169 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 248 (579)
|+.-...|.+.+.++-|..+|....+. ++-+...|......--..|..+....+++.....-. -....|......+-.
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHh
Confidence 888888899999999999999888774 233344555555555667788888888888776643 344555666667777
Q ss_pred cCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHH
Q 047471 249 FNLIGEAEKAFRLIEEK---DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQI 325 (579)
Q Consensus 249 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (579)
.|++..|..++...-+. +...|-+-+.....+.++++|..+|.+.. +..|+...|..-+..---.++.++|.++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 89999999998887652 45678888888999999999999999987 4577777776666666678899999999
Q ss_pred HHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 047471 326 HAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP 402 (579)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 402 (579)
+++..+.- +.-...|..+.+.+...++.+.|...|..-.+ | .+..|-.|...--+.|...+|..++++.+-.+ +-
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 98888753 55567888889999999999999999988754 3 34467777777788899999999999988764 33
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047471 403 DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSAC 482 (579)
Q Consensus 403 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 482 (579)
+...|...|+.-.+.|+.+.|..+..++.+ .++.+...|..-|....+.++-....+.+++.. .|+.++..+...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 688899999999999999999999999988 567777888888888888888888888888775 5677777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCe
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGT 551 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (579)
....+++.|.+.|+++++.+|++..+|..+...+.+.|.-++-.+++++.... .|.-|..|..+...
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999988654 34556667766544
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=1.1e-13 Score=135.94 Aligned_cols=350 Identities=12% Similarity=0.091 Sum_probs=262.9
Q ss_pred HHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhccc---CCCCcccHHHHHHHHHhcCChH
Q 047471 9 LHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEM---SERNLVSWSAMISGHHQAGEHL 85 (579)
Q Consensus 9 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 85 (579)
.+....+|++++|.+++.+.++..+ .....|.+|...|-..|+.+++...+-.. ...|...|-.+..-..+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 3444556999999999999999874 67788999999999999999998776443 2356788999999999999999
Q ss_pred HHHHHHHHcccC-CCH-hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHH----HHHHhcCChhHHHHHhc
Q 047471 86 LALEFFSQMHLL-PNE-YIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLI----SMYMKVGYSSDALLVYG 159 (579)
Q Consensus 86 ~a~~~~~~~~~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~ 159 (579)
+|.-.|.+..+. |+. ..+---...|-+.|+...|...+.++.....+.|..-...++ ..+...++-+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999877 554 344455667788999999999999999876644444444444 44566777788888887
Q ss_pred cCCC-----CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcc----------------------cHH----HHH
Q 047471 160 EAFE-----PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRF----------------------SFA----GGL 208 (579)
Q Consensus 160 ~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------------~~~----~ll 208 (579)
.... .+...++.++..+.+...++.+......+......+|.. .|. .++
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7442 345668899999999999999999988887632222221 111 233
Q ss_pred HHhcccCcccchhHHHHHHHHhC--CCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCC----CcchHHHHHHHHHhCCC
Q 047471 209 EICSVSNDLRKGMILHCLTVKCK--LESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEK----DLISWNTFIAACSHCAD 282 (579)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~ 282 (579)
-++......+....+........ ...+...+.-+..+|...|++.+|..+|..+... +...|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34456666666677777777776 3445667888899999999999999999998763 56689999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHhCcCChHHHHHHHHHHH--------HccCCCCcchHhHHHHHHHhcCC
Q 047471 283 YEKGLSVFKEMSNDHGVRPDD-FTFASILAACAGLASVQHGKQIHAHLI--------RMRLNQDVGVGNALVNMYAKCGL 353 (579)
Q Consensus 283 ~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~ 353 (579)
+++|++.|+..... .|+. ..-.+|-..+.+.|+.++|.+.++.+. ..+..|...+.......+...|+
T Consensus 465 ~e~A~e~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999854 4543 344566667889999999999998854 23345555565666777888888
Q ss_pred hHHHHHHHH
Q 047471 354 ISCSYKLFN 362 (579)
Q Consensus 354 ~~~A~~~~~ 362 (579)
.++=..+-.
T Consensus 542 ~E~fi~t~~ 550 (895)
T KOG2076|consen 542 REEFINTAS 550 (895)
T ss_pred HHHHHHHHH
Confidence 776554433
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=7.1e-14 Score=125.51 Aligned_cols=432 Identities=13% Similarity=0.083 Sum_probs=279.2
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC--Chh-HHHHHhcccCC---CCcccHHHHHHHHH
Q 047471 6 SSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCG--KMI-LARKVFDEMSE---RNLVSWSAMISGHH 79 (579)
Q Consensus 6 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~-~a~~~~~~~~~---~~~~~~~~l~~~~~ 79 (579)
++|++ ...+|.+.++--+|+.|.+.|++.+....-.|.+.-+-.+ ++. .-++-|-.|.. .+..+|
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-------- 190 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-------- 190 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------
Confidence 34443 3456788889999999999998888777766666444322 221 12333333332 344444
Q ss_pred hcCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhc
Q 047471 80 QAGEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYG 159 (579)
Q Consensus 80 ~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (579)
+.|+..+ -+++..+ .+..++..++.++++--..+.|.+++++-.....+.+..++|.+|.+-+-..+-+-.-+...
T Consensus 191 K~G~vAd--L~~E~~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVAD--LLFETLP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMIS 266 (625)
T ss_pred ccccHHH--HHHhhcC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHH
Confidence 2344433 3344443 24457888888888888888888888888777778888888888876554443333333333
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcch----HHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccc-hhHHHHHHHH----h
Q 047471 160 EAFEPNLVSFNALIAGFVENQQPEK----GFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRK-GMILHCLTVK----C 230 (579)
Q Consensus 160 ~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~ 230 (579)
.-..||..|+|+++.+..+.|+++. |++++.+|++-|+.|...+|..++..+.+.++..+ +..+...+.. .
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 3346888888888888888887764 45778889999999999999999998888887755 3333333332 1
Q ss_pred CCC----CChhHHhHHHHHHHhcCChhHHHHHHHhcCCC-----------CcchHHHHHHHHHhCCChHHHHHHHHHhhh
Q 047471 231 KLE----SNPFVGNTIMALYSKFNLIGEAEKAFRLIEEK-----------DLISWNTFIAACSHCADYEKGLSVFKEMSN 295 (579)
Q Consensus 231 ~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 295 (579)
.+. .+...|..-+..|.+..+.+-|.++-.-+... ...-|..+....|+....+.-+..|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222 24455667778888888888888876665532 123466777888889999999999999998
Q ss_pred CCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhh---H
Q 047471 296 DHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVS---W 372 (579)
Q Consensus 296 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~ 372 (579)
. -+-|+..+...++++....+.++-.-+++..++..|.......-.-+...+++.. +.|+... +
T Consensus 427 ~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql 493 (625)
T KOG4422|consen 427 S-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQL 493 (625)
T ss_pred c-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHH
Confidence 8 7889999999999999999999999999999998874333332222222222221 1232221 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHH---HHHHH
Q 047471 373 NTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFT---CLIDL 449 (579)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~ 449 (579)
..+..-++ ..-.+.....-.+|.+... .....+.++-.+.+.|..++|.+++..+.+++.-.|-....+ .+++.
T Consensus 494 ~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~ 570 (625)
T KOG4422|consen 494 QVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDS 570 (625)
T ss_pred HHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHH
Confidence 11111111 0111222223344555433 444555666667888999999999888866544445445555 44555
Q ss_pred HHhcCChHHHHHHHHhC
Q 047471 450 LGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~ 466 (579)
-.+.++...|...++-+
T Consensus 571 a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 56777888888887776
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=5.6e-12 Score=119.43 Aligned_cols=536 Identities=10% Similarity=0.021 Sum_probs=368.6
Q ss_pred hcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC---CCcccHH------------HHHH---
Q 047471 15 TKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWS------------AMIS--- 76 (579)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~------------~l~~--- 76 (579)
.+|+..|..++....+.++ .++..|-+-.+.=-..|.+..|..+..+--+ .+...|- .++.
T Consensus 264 l~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4678889999999988875 3344444444444555666666666544322 1111111 1111
Q ss_pred --------HHHhcCChH----HHHHHHHHcccC-CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 047471 77 --------GHHQAGEHL----LALEFFSQMHLL-PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLIS 143 (579)
Q Consensus 77 --------~~~~~g~~~----~a~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (579)
.++++-+.+ .=.+++++..+. |+... +-++.....+.+.|.-++....+. ++.+... .-
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~---LWKaAVelE~~~darilL~rAvec-cp~s~dL----wl 414 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVR---LWKAAVELEEPEDARILLERAVEC-CPQSMDL----WL 414 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHH---HHHHHHhccChHHHHHHHHHHHHh-ccchHHH----HH
Confidence 111211111 112333333333 44331 222333344455566666666553 2223333 34
Q ss_pred HHHhcCChhHHHHHhcc---CCCCCcchHHHHHHHHHhCCCcchHHHHHHH----HHHCCCCCCcccHHHHHHHhcccCc
Q 047471 144 MYMKVGYSSDALLVYGE---AFEPNLVSFNALIAGFVENQQPEKGFEVFKL----MLRQGLLPDRFSFAGGLEICSVSND 216 (579)
Q Consensus 144 ~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~ 216 (579)
+|++..-++.|..++++ ..+.+...|.+-...--.+|+.+...+++++ +...|+..+...|..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 45666777788877765 3455666776666666677888888777665 3457888888888777778888888
Q ss_pred ccchhHHHHHHHHhCCCCC--hhHHhHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHH
Q 047471 217 LRKGMILHCLTVKCKLESN--PFVGNTIMALYSKFNLIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFK 291 (579)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 291 (579)
.-.+..+...++..|++.. -.+|..-...|.+.+.++-|..+|....+ .+...|......--..|..+....+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 8888888888888887654 35677777788888888888888877765 245667777776677788899999999
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc--CCCCh
Q 047471 292 EMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM--LHRNV 369 (579)
Q Consensus 292 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~ 369 (579)
+...+ ++-....+.......-..|+...|..++..+.+.. +.+..++-.-+.......++++|..+|.+. ..++.
T Consensus 575 kav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 575 KAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 98876 33333444444455667799999999999998876 557788888888889999999999999988 45777
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 370 VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
..|.--+....-.+..++|.+++++..+ .-|+ ...|..+...+.+.++++.|.+.|..-.+ ..+-.+..|-.|.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHH
Confidence 7777777777777889999999998888 4566 45677777778889999999998887776 56667778888888
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------------
Q 047471 449 LLGRAGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT---------------------- 504 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------------------- 504 (579)
.-.+.|++-+|..++++.. .+.+...|...+..-.+.|+.+.|.....++++.-|.
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 8888999999999999873 3347788999999999999999999988888876665
Q ss_pred --------CCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCeEEEEeecccCCcchhhHHHHH
Q 047471 505 --------TTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGTFEKFTVAEFSHSKIGEINYML 572 (579)
Q Consensus 505 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (579)
||.....++..+....+++.|++.|.+..+.+. +-|..|.- .++|-.-+.+-++..+++++-
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~--d~GD~wa~----fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP--DNGDAWAW----FYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC--ccchHHHH----HHHHHHHhCCHHHHHHHHHHH
Confidence 466667778888888999999999998877654 34433321 133333344455566665554
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=6.6e-13 Score=119.41 Aligned_cols=237 Identities=19% Similarity=0.228 Sum_probs=153.8
Q ss_pred cCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHH
Q 047471 160 EAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVG 239 (579)
Q Consensus 160 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 239 (579)
+..+.+..+|.++|.++++--..+.|.++|++-.....+.+..+|+.++.+.+-.. ..++..+|....+.||..++
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 34445667899999999999999999999999998888899999999888755332 27888999999999999999
Q ss_pred hHHHHHHHhcCChhHHHHHHH----hcC----CCCcchHHHHHHHHHhCCChHH-HHHHHHHhhhC------CCCCC-CH
Q 047471 240 NTIMALYSKFNLIGEAEKAFR----LIE----EKDLISWNTFIAACSHCADYEK-GLSVFKEMSND------HGVRP-DD 303 (579)
Q Consensus 240 ~~l~~~~~~~~~~~~a~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~------~~~~p-~~ 303 (579)
|+++.+..+.|+++.|.+.+- +|. +|...+|..+|..+++.++..+ +..++.++... ..+.| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998887765443 232 2556666666666666666533 33344333321 01222 33
Q ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHc----cCCCC---cchHhHHHHHHHhcCChHHHHHHHHccCC----CChhhH
Q 047471 304 FTFASILAACAGLASVQHGKQIHAHLIRM----RLNQD---VGVGNALVNMYAKCGLISCSYKLFNEMLH----RNVVSW 372 (579)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 372 (579)
..|...|..|.+..+.+.|.++...+..- -+.|+ ...|..+....+.....+.-...|+.|+. |+..+-
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 45566666666666666666665554421 12222 12334455555555566666666666632 455555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047471 373 NTIIAAHANHRLGGSALKLFEQMKATGI 400 (579)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 400 (579)
..++.+....|.++-.-++|.+++..|.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 5555566666666666666666666553
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.4e-12 Score=117.36 Aligned_cols=477 Identities=12% Similarity=0.088 Sum_probs=349.5
Q ss_pred cCChhHHHHHhcccCC---CCcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHh-hHHHHHHHHhccCChHHHHHHHH
Q 047471 50 CGKMILARKVFDEMSE---RNLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEY-IFASAISACAGIQSLVKGQQIHA 124 (579)
Q Consensus 50 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 124 (579)
++++..|..+|++... .+...|--.+..-.++..+..|..++++.... |.+. .|.--+..=-..|++..|.++|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4567778888888775 56667888888888999999999999998766 6654 34444444456799999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhcc--CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcc
Q 047471 125 YSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGE--AFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRF 202 (579)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 202 (579)
.-.. ..|+...|++.|+.-.+...++.|..++++ +..|++.+|--....-.+.|....+..+|....+. ..|..
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~ 241 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDE 241 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHH
Confidence 8875 789999999999999999999999999998 45799999999999889999999999999988763 22333
Q ss_pred cHHHHHHHh----cccCcccchhHHHHHHHHhCCCCC-hhHHhHHHHHHHhcCChhHHHHHH--------HhcCCC---C
Q 047471 203 SFAGGLEIC----SVSNDLRKGMILHCLTVKCKLESN-PFVGNTIMALYSKFNLIGEAEKAF--------RLIEEK---D 266 (579)
Q Consensus 203 ~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~---~ 266 (579)
.-..++.++ .+...++.|..+|+..++.-.... ...|..+...--+.|+....++.. +..... |
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 333344444 456678888888888877643322 344555555555667655544443 222222 4
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH-------HHHHHHHHHH---hCcCChHHHHHHHHHHHHccCCC
Q 047471 267 LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD-------FTFASILAAC---AGLASVQHGKQIHAHLIRMRLNQ 336 (579)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~ 336 (579)
-.+|-..++.--..|+.+...++|++.... ++|-. ..|..+=.+| ....+.+.+.++++...+ -+|.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 557777788888889999999999999864 66632 2333333333 357899999999999998 4566
Q ss_pred CcchHhHHHHHHH----hcCChHHHHHHHHccC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047471 337 DVGVGNALVNMYA----KCGLISCSYKLFNEML--HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGL 410 (579)
Q Consensus 337 ~~~~~~~li~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 410 (579)
...+|.-+--+|+ ++.++..|.+++...+ .|...+|...|..-.+.++++.+..++++.++-+ +-+..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 6677766555554 6789999999999984 4778889888999899999999999999999954 3368888888
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHH-----h
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLGTLLSACR-----L 484 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~ 484 (579)
...-...|+.+.|..+|+-++....+......|.+.|+--...|.++.|..+++++ ...+...+|.+....-. .
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 88888999999999999999886444444556677777777899999999999997 34556667766665433 3
Q ss_pred cC-----------CHHHHHHHHHHHHhcCCC--CCccHHHHHHH----HHcCCChHHHHHHHHHHHh
Q 047471 485 RR-----------DVVIGERLAKQLFHLQPT--TTSPYVLLSNL----YASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 485 ~~-----------~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~ 534 (579)
.+ +...|..+|+++.....+ ...-...|+.+ -...|...+...+-++|.+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 34 567899999998873311 12333344333 3445766666666666654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.4e-16 Score=147.61 Aligned_cols=257 Identities=15% Similarity=0.099 Sum_probs=114.4
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHH-HHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhc
Q 047471 273 FIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTF-ASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKC 351 (579)
Q Consensus 273 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 351 (579)
+...+.+.|++++|++++++.... ..+|+...| ..+...+...++.+.|...++.+...+ +.++..+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 355667778888888888655443 223444444 334445566788888888888887765 3356666777776 688
Q ss_pred CChHHHHHHHHccC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047471 352 GLISCSYKLFNEML--HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATG-IKPDSVTFIGLLTACNHAGLVKEGEAYFN 428 (579)
Q Consensus 352 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 428 (579)
+++++|.+++.... .+++..+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999998888763 3566677788888999999999999999987643 34567778888888999999999999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 429 SMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
+..+. .|.|......++..+...|+.+++.++++... .+.|+..+..+..++...|++++|..+++++.+.+|+|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99984 34457788899999999999999888877762 245777888999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.....++.++...|+.++|.++.++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=2.1e-13 Score=123.39 Aligned_cols=431 Identities=13% Similarity=0.095 Sum_probs=264.1
Q ss_pred HHHHhcCChHHHHHHHHHcccC---CCHhhHHH-HHHHHhccCChHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHh
Q 047471 76 SGHHQAGEHLLALEFFSQMHLL---PNEYIFAS-AISACAGIQSLVKGQQIHAYSLKFGYASISF----VGNSLISMYMK 147 (579)
Q Consensus 76 ~~~~~~g~~~~a~~~~~~~~~~---p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 147 (579)
..|..+....+|+..|+-+.+. |+....-. +-..+.+.+.+.+|.++++..+..-...+.. +.+.+...+.+
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq 288 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQ 288 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEe
Confidence 3444455556666666666554 44433221 2334556666666666666655533222222 23333344566
Q ss_pred cCChhHHHHHhccCCC--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHH
Q 047471 148 VGYSSDALLVYGEAFE--PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHC 225 (579)
Q Consensus 148 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 225 (579)
.|.++.|+..|+...+ |+..+--.|+-++..-|+.++..+.|..|+.--..||...|. +
T Consensus 289 ~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------~------------ 349 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------K------------ 349 (840)
T ss_pred cccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------C------------
Confidence 6777777766666432 444433333334444566666666666666544444443331 0
Q ss_pred HHHHhCCCCChhHHhHH-----HHHHHhcCChhHHH-------HHHHhcCCCCcc---hH----------H--------H
Q 047471 226 LTVKCKLESNPFVGNTI-----MALYSKFNLIGEAE-------KAFRLIEEKDLI---SW----------N--------T 272 (579)
Q Consensus 226 ~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~-------~~~~~~~~~~~~---~~----------~--------~ 272 (579)
..-.|+....+.- +.-..+.+. ..|+ ++..-+..|+-. -| . .
T Consensus 350 ----~~ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 350 ----EKDDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ----CcCCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 0001111111111 111111111 1111 122222222210 01 0 1
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHh
Q 047471 273 FIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASI--LAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAK 350 (579)
Q Consensus 273 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 350 (579)
-...+.+.|+++.|+++++-..+. .-+.-...-+.+ +.-+....++..|.++-+...... .-++.....-...-..
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~k-dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKK-DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc-cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 123478899999999999888665 322222222222 222223446777777776665433 2222222222233345
Q ss_pred cCChHHHHHHHHccCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047471 351 CGLISCSYKLFNEMLHRNVVSWNTIIA---AHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYF 427 (579)
Q Consensus 351 ~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (579)
.|++++|.+.|++.+..|..+-.+|.. .+-..|+.++|+..|-++..- +..+......+...|....+...|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 799999999999999888776666554 367889999999999888763 3346677778888899999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 428 NSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYT-KKFP-LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
.+... -++.|+...+.|.+.|-+.|+-..|.+.. +... ++-+..+..-|...|....-.++++.+|+++.-+.|+.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 98876 67778999999999999999999999864 4444 33466777777777777777899999999999999987
Q ss_pred CccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 506 TSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 506 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
...-.+++.++.+.|++.+|+.+++....+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 666667788889999999999999998765
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=9.5e-13 Score=120.44 Aligned_cols=213 Identities=15% Similarity=0.124 Sum_probs=168.7
Q ss_pred CcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHH
Q 047471 315 GLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKL 391 (579)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (579)
-.|+.-.+..-++..++... .+...|--+..+|....+.++-...|+...+ .++.+|..-.+.+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 45777777788887777652 2333355566678888888888888888743 4566777777777778899999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 047471 392 FEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLG 469 (579)
Q Consensus 392 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 469 (579)
|++.+. +.| +...|..+..+..+.+.++++...|++.++ .+|..+..|+.....+...++++.|.+.|+.. ...
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 455 467777777777888999999999999998 56777888999999999999999999999885 444
Q ss_pred CC---------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 470 QD---------PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 470 p~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
|. +.+-.+++-.-. .+|+..|+.+++++++++|.....|..|+......|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43 223333333333 4899999999999999999999999999999999999999999999764
No 37
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=1e-12 Score=115.36 Aligned_cols=449 Identities=14% Similarity=0.102 Sum_probs=270.9
Q ss_pred HHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHHHhcCChH
Q 047471 9 LHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQAGEHL 85 (579)
Q Consensus 9 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 85 (579)
+.-+..++++..|..+++.-...+-+....+---+..++.+.|++++|...+..+.+ ++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 455667788999999998876544333223444456778889999999999988764 56677777777778889999
Q ss_pred HHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--
Q 047471 86 LALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE-- 163 (579)
Q Consensus 86 ~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 163 (579)
+|..+-....+. +..-..++....+.++-++-..+.+.+.. +..--.+|.+.....-.+.+|++++.+...
T Consensus 109 eA~~~~~ka~k~--pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 109 EAKSIAEKAPKT--PLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHhhCCCC--hHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999988887532 23444555556677887777776665543 223445666776677789999999988664
Q ss_pred CCcchHHHHH-HHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhc--ccCcccchhHHHHHHHHhCCCCChhHHh
Q 047471 164 PNLVSFNALI-AGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICS--VSNDLRKGMILHCLTVKCKLESNPFVGN 240 (579)
Q Consensus 164 ~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (579)
|+-...|..+ -+|.+..-++-+.++++-..+. .||+ |+..-+.+|. +.=.-..|..-...+.+.+-..-
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~----- 253 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY----- 253 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-----
Confidence 4444555444 4677788888888888887764 3554 3333333332 22222233333333333221110
Q ss_pred HHHHHHHhc-----CChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh-
Q 047471 241 TIMALYSKF-----NLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACA- 314 (579)
Q Consensus 241 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~- 314 (579)
..+.-.++. .+-+.|.+++-.+.+.-+.+--.++--|.+.+++.+|..+.+++. ...|-......+..+..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALG 330 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhh
Confidence 111222222 223445555544444333444445556777777777777776664 34554444433333221
Q ss_pred ----CcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHH
Q 047471 315 ----GLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALK 390 (579)
Q Consensus 315 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 390 (579)
......-|.+.|+..-+++...| +..-..++...+.-..++++++-
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecD------------------------------TIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECD------------------------------TIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccc------------------------------cccchHHHHHHHHHHHHHHHHHH
Confidence 11123333444433333332222 12223445555555567788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCC
Q 047471 391 LFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHF-TCLIDLLGRAGKLLEAEEYTKKFPLG 469 (579)
Q Consensus 391 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (579)
+++....--...|...| .+..+.+..|++.+|.++|-.+..- .+ .|..+| ..|.++|.+.|+++.|.+++-++..+
T Consensus 381 YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~ 457 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP 457 (557)
T ss_pred HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc
Confidence 88777765333334444 4667788888888888888777542 22 233444 45678888999999999988888644
Q ss_pred CChhhHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCCccH
Q 047471 470 QDPIVLGTLL-SACRLRRDVVIGERLAKQLFHLQPTTTSPY 509 (579)
Q Consensus 470 p~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 509 (579)
.+..++..+| .-|.+.+.+--|-+.|+.+-.++|. |+-|
T Consensus 458 ~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 458 SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 4555544444 4588888888888888888888876 4433
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=1.1e-12 Score=128.33 Aligned_cols=498 Identities=13% Similarity=0.033 Sum_probs=272.9
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCC----CcccHHHHHHHHHhcCChHHHHHHHHHcccCC
Q 047471 23 SLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSER----NLVSWSAMISGHHQAGEHLLALEFFSQMHLLP 98 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p 98 (579)
.++..+...|+.|+..+|.+++..||..|+.+.|- +|.-|.-. +...++.++.+..++++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------CC
Confidence 46777888899999999999999999999988888 78777532 2334555555555555554443 25
Q ss_pred CHhhHHHHHHHHhccCChHHH---HHHHHHHH----HhcCCC-chhH-------------HHHHHHHHHhcCChhHHHHH
Q 047471 99 NEYIFASAISACAGIQSLVKG---QQIHAYSL----KFGYAS-ISFV-------------GNSLISMYMKVGYSSDALLV 157 (579)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~----~~~~~~-~~~~-------------~~~l~~~~~~~g~~~~A~~~ 157 (579)
...||..++.+|...||+..- ++.+..+. ..|+.. .... ....+....-.|-++.++++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665442 22111111 112110 0000 01112222223333333333
Q ss_pred hcc---------------------------------CC-CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCccc
Q 047471 158 YGE---------------------------------AF-EPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFS 203 (579)
Q Consensus 158 ~~~---------------------------------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 203 (579)
+.. .. .++..+|.+++..-..+|+.+.|..++.+|++.|++.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 321 12 26778888999999999999999999999999999999888
Q ss_pred HHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 047471 204 FAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADY 283 (579)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 283 (579)
|..++.+ .++...+..+...|...|+.|+..|+...+..+...|....+.+..+.-.--....+..+.++.....+.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8888876 7888888889999999999999999888777777655422222111110000111222222221111111
Q ss_pred H-----HHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccC---CCCcchHhHHHHHHHhcCChH
Q 047471 284 E-----KGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRL---NQDVGVGNALVNMYAKCGLIS 355 (579)
Q Consensus 284 ~-----~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 355 (579)
+ -....+.+..-. |+......|..... ...+|.-+.++++-..+..... +.++..|..++.-|.+.-+..
T Consensus 319 ~~nl~~~v~~s~k~~fLl-g~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLL-GTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHhhHHHHh-ccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 1 111222222112 33333333333322 3336777777777666653221 122333444444443322111
Q ss_pred HHHHHHH--ccCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-------CHHHHHHHHHHHhccCCH
Q 047471 356 CSYKLFN--EMLHRNVVSW--NTIIAAHANHRLGGSALKLFEQMKA----TGIKP-------DSVTFIGLLTACNHAGLV 420 (579)
Q Consensus 356 ~A~~~~~--~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p-------~~~~~~~ll~~~~~~~~~ 420 (579)
-...++. +.++.+..++ -.+.....+. +...+++-+..+.. .-..| -...-+.++..|++.-+.
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111 0000000000 0011111110 11111111111110 00111 112334555566666666
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047471 421 KEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP-----LGQDPIVLGTLLSACRLRRDVVIGERLA 495 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 495 (579)
.+++..-+..... -++ ..|..|++.+....+.+.|..+.++.. ..-|...+..+.....+.+....+..++
T Consensus 476 lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 6666544444331 222 568889999999999999999988874 2234455667777788888888888888
Q ss_pred HHHHhcC---CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047471 496 KQLFHLQ---PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKK 539 (579)
Q Consensus 496 ~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 539 (579)
+++.+.- |.-......+.......|+.+.-.+..+-+...|+.-
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888733 3334456667777777899888888888888777754
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=7.3e-12 Score=123.28 Aligned_cols=516 Identities=12% Similarity=0.067 Sum_probs=350.5
Q ss_pred cchHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHH---HHHHHH
Q 047471 2 AKSISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWS---AMISGH 78 (579)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~ 78 (579)
+..|.+|...|-.+|+..++...+-.+--.. +.|...|..+.....+.|.+..|.-.|.+..+.++.-|. .-...|
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~ 251 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLY 251 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3578999999999999999987766554443 356689999999999999999999999999874444343 345678
Q ss_pred HhcCChHHHHHHHHHcccC-C------CHhhHHHHHHHHhccCChHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCC
Q 047471 79 HQAGEHLLALEFFSQMHLL-P------NEYIFASAISACAGIQSLVKGQQIHAYSLKF-GYASISFVGNSLISMYMKVGY 150 (579)
Q Consensus 79 ~~~g~~~~a~~~~~~~~~~-p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 150 (579)
-+.|+...|.+-|.++... | .......+++.+...++-+.|.+.++..... +-..+...++.++..|.+...
T Consensus 252 ~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q 331 (895)
T KOG2076|consen 252 QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ 331 (895)
T ss_pred HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence 8899999999999999877 5 2223444566677777778888888877763 334455677888888988888
Q ss_pred hhHHHHHhccCCC--------------------------CCcchHHH----HHHHHHhCCCcchHHHHHHHHHHCCCCC-
Q 047471 151 SSDALLVYGEAFE--------------------------PNLVSFNA----LIAGFVENQQPEKGFEVFKLMLRQGLLP- 199 (579)
Q Consensus 151 ~~~A~~~~~~~~~--------------------------~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~p- 199 (579)
++.|......+.. ++..+|.. +.-++......+....+.....+..+.|
T Consensus 332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 8888876533211 22222221 2334444555555555555566665433
Q ss_pred -CcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHH
Q 047471 200 -DRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKD---LISWNTFIA 275 (579)
Q Consensus 200 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~ 275 (579)
+...|.-+..++...|.+..|..++..+.......+..+|-.+..+|...|..++|...|+.+.... ...-..|..
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 4557889999999999999999999999988777778899999999999999999999999987643 334555667
Q ss_pred HHHhCCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHcc-----C---------
Q 047471 276 ACSHCADYEKGLSVFKEMSND-------HGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMR-----L--------- 334 (579)
Q Consensus 276 ~~~~~~~~~~a~~~~~~m~~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~--------- 334 (579)
.+.+.|++++|.+.+..+... .+..|+..........+.+.|+.++-..+...|+... +
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~ 571 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRR 571 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 789999999999999986422 1345555555566667788888888766665555321 0
Q ss_pred --------CCCcchHhHHHHHHHhcCChHHHHHHHHcc--------CC---CCh-hhHHHHHHHHHhcCChHHHHHHHHH
Q 047471 335 --------NQDVGVGNALVNMYAKCGLISCSYKLFNEM--------LH---RNV-VSWNTIIAAHANHRLGGSALKLFEQ 394 (579)
Q Consensus 335 --------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~---~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 394 (579)
+........++.+-.+.++......-...- .. .+. ..+.-++.++++.+++++|+.+...
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~ 651 (895)
T KOG2076|consen 572 RAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFT 651 (895)
T ss_pred HhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111112222333333333322211111111 00 111 2345577789999999999999998
Q ss_pred HHHCCCC--CCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 395 MKATGIK--PDS---VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD---IEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 395 m~~~~~~--p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
+....+- ++. ..-...+.++...+++..|...++.+...++...+ ...|+...+.+.+.|+-.--..++...
T Consensus 652 a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~ 731 (895)
T KOG2076|consen 652 ALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL 731 (895)
T ss_pred HHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8874321 221 11234455677889999999999999886444433 244555556666666554444544443
Q ss_pred -CCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 467 -PLGQDPIVLGTLLSA--CRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 467 -~~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
..+|+......++.+ ....+.+..|...+-++....|++|.+-..++-++..
T Consensus 732 ~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 732 LVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred hccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 334444333334433 4567889999999999999999999877777665543
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.8e-12 Score=125.69 Aligned_cols=275 Identities=9% Similarity=0.017 Sum_probs=198.7
Q ss_pred cCChhHHHHHHHhcCCC--Ccc-hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHH--HHHHHHhCcCChHHHH
Q 047471 249 FNLIGEAEKAFRLIEEK--DLI-SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFA--SILAACAGLASVQHGK 323 (579)
Q Consensus 249 ~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~ 323 (579)
.|+++.|++.+....+. ++. .|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 57888888877765543 222 2333344457888889999888888754 56654332 2345677888999999
Q ss_pred HHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCC---hh--------hHHHHHHHHHhcCChHHHHHHH
Q 047471 324 QIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRN---VV--------SWNTIIAAHANHRLGGSALKLF 392 (579)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--------~~~~l~~~~~~~~~~~~a~~~~ 392 (579)
..++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+.. .. .|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9888888776 6667788888888889999999998888874321 11 2333343344445556666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 047471 393 EQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ- 470 (579)
Q Consensus 393 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 470 (579)
+.+-+. .+.++.....+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..++. +..|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665433 3446778888888999999999999999888763 4555322 233344568999999988876 4445
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
|+.....+...|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55667788888999999999999999999999884 5577899999999999999999987654
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=6e-13 Score=126.72 Aligned_cols=278 Identities=14% Similarity=0.042 Sum_probs=219.6
Q ss_pred ChhHHHHHHHhcCCC--C-cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHhCcCChHHHHHHH
Q 047471 251 LIGEAEKAFRLIEEK--D-LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRP-DDFTFASILAACAGLASVQHGKQIH 326 (579)
Q Consensus 251 ~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (579)
+..+|...|..+.+. | ......+.++|...+++++|.++|+.+.+...... +...|++.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 457888888886542 2 34556778899999999999999999986523222 456777777654321 222222
Q ss_pred -HHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 047471 327 -AHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNV---VSWNTIIAAHANHRLGGSALKLFEQMKATGIKP 402 (579)
Q Consensus 327 -~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 402 (579)
+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++.++-|+ .+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2333333 67789999999999999999999999999976444 5778888888899999999999998876 444
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHH
Q 047471 403 D-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLL 479 (579)
Q Consensus 403 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 479 (579)
. -..|..+...|.+.++++.|+-.|+++.+ --+-+......+...+.+.|+.++|+.+++++ ...| |+..--.-+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3 45667777889999999999999999986 33446677778888999999999999999997 3344 666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
..+...+++++|...++++.++-|++...+..++.+|.+.|+.+.|+.-+..+.+..+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 7777889999999999999999999999999999999999999999999998876544
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=5.6e-12 Score=122.30 Aligned_cols=218 Identities=9% Similarity=-0.060 Sum_probs=139.9
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCc-------chHhHHHHHHH
Q 047471 277 CSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDV-------GVGNALVNMYA 349 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~ 349 (579)
+...|++++|...++++.+. . +-+......+...+.+.|+++.+..++..+.+.+..++. .+|..++....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~-~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEV-A-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444332 1 112233333444444444444444444444443322111 12223333333
Q ss_pred hcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047471 350 KCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAY 426 (579)
Q Consensus 350 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 426 (579)
...+.+...++++..++ .++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHH
Confidence 44455666666666642 46667778888889999999999999888873 5555322 23334456889999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 427 FNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
.+...+ ..+-|...+..+.+.+.+.|++++|.+.|++. ...|+...+..+...+...|+.++|.+++++.+.+-
T Consensus 317 ~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 317 LRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998887 44556667888899999999999999999886 567888888888899999999999999999987754
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=6.1e-13 Score=126.69 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=197.1
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccC--CCCcchHhHHHHHHHhcCChHHHH
Q 047471 281 ADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRL--NQDVGVGNALVNMYAKCGLISCSY 358 (579)
Q Consensus 281 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 358 (579)
-+..+|+..|.+.... +.-+......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.=.+.---
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 3568899999995443 444456777888999999999999999999987641 235566766654443322222222
Q ss_pred HHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCC
Q 047471 359 KLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGIS 437 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 437 (579)
+-+-.+-+..+.+|-++.++|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+.. .+
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 222233445788999999999999999999999999998 566 5788988888899999999999999988752 11
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 438 PDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
-+-..|.-|.-.|.+.++++.|.-.|+++ .+.|. ......+...+.+.|+.++|++++++++.++|.|+-.-+..+.+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 22334455677899999999999999997 67774 45566677778899999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHhCC
Q 047471 516 YASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~~ 536 (579)
+...+++++|+..++++.+..
T Consensus 567 l~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhC
Confidence 999999999999999998653
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.3e-11 Score=108.06 Aligned_cols=256 Identities=12% Similarity=0.019 Sum_probs=196.7
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccC--CCCcchHhHHHHHHHhc
Q 047471 274 IAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRL--NQDVGVGNALVNMYAKC 351 (579)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~ 351 (579)
..++....+.+++++-....... |.+-+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.-...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34555556777777777777666 6666655555555566778889999999999888742 12455666555333222
Q ss_pred CChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047471 352 GLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSM 430 (579)
Q Consensus 352 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 430 (579)
.++.--....-.+-+--+.|..++.+-|.-.++.++|..+|++..+. .|. ...|+.+.+-|....+...|.+-++.+
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 22222112222223334556666777788889999999999999984 555 566777777799999999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 431 EKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
++ -.+.|-..|..|.++|.-.+.+.=|+-+|++. ..+| |+..|.+|...|.+.++.++|++.|.+++..+..+...
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 97 45678889999999999999999999999997 4566 88999999999999999999999999999999888899
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 509 YVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 509 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
+..|+.+|.+.++..+|.+.+++..+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999888765
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2.6e-11 Score=110.78 Aligned_cols=415 Identities=11% Similarity=0.054 Sum_probs=297.5
Q ss_pred HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcc-cHHHHHHHhcccCcccchh
Q 047471 146 MKVGYSSDALLVYGEAFE---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRF-SFAGGLEICSVSNDLRKGM 221 (579)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~ 221 (579)
...+++..|..+|++... .+...|--.+..-.++..+..|..+++..... -|... .+---+..--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345667777788877543 55666777778888888888899888888764 34332 2223333445678888899
Q ss_pred HHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcC--CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCC
Q 047471 222 ILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIE--EKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGV 299 (579)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 299 (579)
++|...... .|+...|.+.+..-.+.+.++.|..++++.. .|++..|-...+.-.+.|+...+..+|....+..|-
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 988877654 7899999999999999999999999999865 588889999999999999999999999998765232
Q ss_pred C-CCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCC--cchHhHHHHHHHhcCChHHHHHH--------HHccCCC-
Q 047471 300 R-PDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQD--VGVGNALVNMYAKCGLISCSYKL--------FNEMLHR- 367 (579)
Q Consensus 300 ~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~- 367 (579)
. .+...|.+...--.+++.++.|..+|+-..+.- |.+ ...|..+...--+-|+-....+. |+.+++.
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 1 112233333333356788999999998888753 222 34455554444445664444433 2333443
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH---HhccCCHHHHHHHHHHhHHHhC
Q 047471 368 --NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSV-------TFIGLLTA---CNHAGLVKEGEAYFNSMEKTYG 435 (579)
Q Consensus 368 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 435 (579)
|-.+|--.+..-...|+.+...++|++++.. ++|-.. .|..+=-+ -....|++.+.++++..++ -
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 4456666777777889999999999999986 566321 22222112 2357899999999999987 5
Q ss_pred CCCChhHHHHHHHHH----HhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 436 ISPDIEHFTCLIDLL----GRAGKLLEAEEYTKKF-PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 436 ~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
+|....+|..+--+| .++.++..|.+++... +.-|-..+|...|..-.+.++++....++++.++-+|.|..+|.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 666666666554333 5788999999999875 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCeEEEEeecccCCcchhhHHHHH
Q 047471 511 LLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGTFEKFTVAEFSHSKIGEINYML 572 (579)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (579)
..+..-...|+++.|+.+++...+.+....|...|-.. -.|=..+.-++....+|..|
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY----IdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY----IDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh----hhhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999988766555554333211 11222334455566666554
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=1.3e-11 Score=120.45 Aligned_cols=279 Identities=10% Similarity=-0.008 Sum_probs=169.4
Q ss_pred HhcCChhHHHHHHHhcCCC--Cc-chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHH--HHHHHHHHHhCcCChHH
Q 047471 247 SKFNLIGEAEKAFRLIEEK--DL-ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDF--TFASILAACAGLASVQH 321 (579)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~ 321 (579)
...|+++.|.+.+....+. ++ ..+-....+....|+++.|.+.+.+..+. .|+.. ........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3456777777776665542 21 22333345566667777777777776543 23332 22223555666777777
Q ss_pred HHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHH----HHHHHHhcCChHHHHHHHHH
Q 047471 322 GKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNT----IIAAHANHRLGGSALKLFEQ 394 (579)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~a~~~~~~ 394 (579)
|...++.+.+.. |.++.+...+...+...|++++|.+.+..+.+ .+...+.. ........+..++..+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777665 55556667777777777777777777776643 22222211 11111222333333445555
Q ss_pred HHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhH-HHHHHHHH--HhcCChHHHHHHHHhC-C
Q 047471 395 MKATGI---KPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEH-FTCLIDLL--GRAGKLLEAEEYTKKF-P 467 (579)
Q Consensus 395 m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~--~~~g~~~~A~~~~~~~-~ 467 (579)
+.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... ...++..+ ...++.+.+.+.+++. +
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 544321 126667777777788888888888888888764 233221 00122222 2346677777777665 3
Q ss_pred CCC-Ch--hhHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 468 LGQ-DP--IVLGTLLSACRLRRDVVIGERLAK--QLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 468 ~~p-~~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
..| |+ ....++.+.+.+.|++++|.+.|+ .+.+..|++ ..+.+++.++.+.|+.++|.+++++..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344 34 566688888888888888888888 466677764 446788888888888888888888754
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=7e-14 Score=129.61 Aligned_cols=90 Identities=18% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG 451 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (579)
...++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|+.++++..+. .+.|+.....+.+++.
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccc
Confidence 3344444444444444444444443321 222333334444444444444444444444432 2224444444444444
Q ss_pred hcCChHHHHHHHH
Q 047471 452 RAGKLLEAEEYTK 464 (579)
Q Consensus 452 ~~g~~~~A~~~~~ 464 (579)
..|+.++|.++.+
T Consensus 260 ~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 260 QAGRKDEALRLRR 272 (280)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 4444444444433
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.4e-10 Score=106.51 Aligned_cols=219 Identities=11% Similarity=-0.003 Sum_probs=169.5
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHH
Q 047471 277 CSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISC 356 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (579)
+.-.|+.-.|..-|+..... ...++. .|..+...|....+.++....|+...+.+ +.++.+|..-.+++.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l-~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKL-DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhc-Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 44568889999999998865 322222 27777778889999999999999999887 7788888888888888999999
Q ss_pred HHHHHHccCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 357 SYKLFNEMLHRNVV---SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 357 A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
|..-|++.+.-++. .|--+..+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..++-
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999999664443 4444555556788999999999999886 4545788999999999999999999999999853
Q ss_pred hCCCCC-------hhH--HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 434 YGISPD-------IEH--FTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 434 ~~~~~~-------~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
.|+ +.. -..++- +.-.+++..|..++++. +..| ....+..|...-.++|+.++|+++|++...+-
T Consensus 492 ---E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 ---EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ---ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333 211 222222 22348999999999987 5555 34668888888899999999999999988765
Q ss_pred C
Q 047471 503 P 503 (579)
Q Consensus 503 p 503 (579)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=3.2e-11 Score=117.74 Aligned_cols=254 Identities=11% Similarity=-0.040 Sum_probs=171.4
Q ss_pred HHHHHhcCChhHHHHHHHhcCC--CCc--chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCC
Q 047471 243 MALYSKFNLIGEAEKAFRLIEE--KDL--ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLAS 318 (579)
Q Consensus 243 ~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 318 (579)
..++.+.|+.+.|.+.+....+ |+. .........+...|+++.|.+.++.+.+. . +-+......+...+...|+
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM-A-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHhh
Confidence 4455556666666666666533 222 12233456667777888888888777755 2 2244556677777778888
Q ss_pred hHHHHHHHHHHHHccCCCCcchHhHHHHHH---H----hcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHH
Q 047471 319 VQHGKQIHAHLIRMRLNQDVGVGNALVNMY---A----KCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSA 388 (579)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~----~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 388 (579)
++.+.+.+..+.+.+..+.......-..++ . .....+...+.++..++ .++..+..+...+...|++++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 888888888777776433322211111111 2 12223444445555543 4778888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHH--H-HHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 047471 389 LKLFEQMKATGIKPDSVT--F-IGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKK 465 (579)
Q Consensus 389 ~~~~~~m~~~~~~p~~~~--~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (579)
.+.+++..+. .||... + ..........++.+.+.+.++...+.....|+.....++...+.+.|++++|.+.|++
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999999985 344332 1 1111223445788899999998887432222226677899999999999999999994
Q ss_pred ---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 466 ---FPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 466 ---~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
....|++..+..+...+.+.|+.++|.+++++.+.
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35689998888999999999999999999999876
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.4e-11 Score=109.72 Aligned_cols=495 Identities=13% Similarity=0.004 Sum_probs=258.1
Q ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcc--cCCCCcccHHHHHHHHHhcC
Q 047471 5 ISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDE--MSERNLVSWSAMISGHHQAG 82 (579)
Q Consensus 5 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~l~~~~~~~g 82 (579)
|..+++-+..+.++.-|.-+-++....+..| ..---+++++.-.|.++.|..+... +.+.|..+......++.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4556666667777777777777776655444 3333567888888888888776654 44578888888889999999
Q ss_pred ChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 047471 83 EHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF 162 (579)
Q Consensus 83 ~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (579)
+|++|+.++.......+...|...=. +..=+.+.+.+.. +......++-.-...|....+.++|...+.+..
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~~~~------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAGEDL------MINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhh--hceeccCcccccc------cccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 99999999884422211111100000 0000000010000 000011111111233445556667777776666
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCC----CCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhH
Q 047471 163 EPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGL----LPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFV 238 (579)
Q Consensus 163 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 238 (579)
..|+..+..+...-... .-.+.+.++.+..... +-+......+.........-+.....-....-.+..-++.+
T Consensus 169 ~~D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred hcchhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 56666555443322111 1112122222211100 11111111111111000000000000000111223334445
Q ss_pred HhHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhC
Q 047471 239 GNTIMALYSKFNLIGEAEKAFRLIEEKD---LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAG 315 (579)
Q Consensus 239 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 315 (579)
.....+-+...+++.+..++++.+.+.| ...+..-|..+...|+..+-..+=.++++. .+-.+.+|-.+.--|..
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHH
Confidence 5555566666777777777777766543 334444555666777776666666666654 33345566666666666
Q ss_pred cCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047471 316 LASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLF 392 (579)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (579)
.|+..+|.+.|.+....+ +.-...|-.+...|+-.|.-+.|...|..+- ......+--+.--|.+.+....|.++|
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 677777777776665443 2223345556666666666666666665541 111112222333466666777777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh-CCC----CChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 393 EQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY-GIS----PDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 393 ~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
.+... +.| |+...+-+.-.....+.+.+|..+|+.....- .+. .-..+++.|..+|.+.+++++|+..+++.
T Consensus 404 ~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 66665 344 45555555444555666777777776665210 000 12234566666777777777777777664
Q ss_pred -C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 467 -P-LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 467 -~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
. .+.+..++.++.-.+...|+++.|.+.|.+++.+.|+|..+-..|..+.
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 2 2335666666666667777777777777777777777655554444433
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=5.3e-09 Score=99.58 Aligned_cols=514 Identities=13% Similarity=0.116 Sum_probs=311.6
Q ss_pred CcchHHHHHHHhhhhcchhHHHHHHHHHHHhc-CCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHH
Q 047471 1 MAKSISSLLHHCSKTKALQQGISLHAAVLKMG-IQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHH 79 (579)
Q Consensus 1 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 79 (579)
|++.|-.-++-...+|++..-+..|+..+..- +.-...+|...+......|-++-+.+++++..+-++..-+..|.-++
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56677777888888999999999999887753 22345578888888888898999999999988877777888899999
Q ss_pred hcCChHHHHHHHHHcccC--------CC-HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCC--Cc--hhHHHHHHHHHH
Q 047471 80 QAGEHLLALEFFSQMHLL--------PN-EYIFASAISACAGIQSLVKGQQIHAYSLKFGYA--SI--SFVGNSLISMYM 146 (579)
Q Consensus 80 ~~g~~~~a~~~~~~~~~~--------p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~ 146 (579)
..+++++|.+.+...... ++ ...|..+-...++.-+.-....+ +.+++.|+. +| -..|.+|.+-|.
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 999999999999888654 22 23455555555544433322222 222333322 33 357899999999
Q ss_pred hcCChhHHHHHhccCCC--CCcchHHHHHHHHHh----------------CCC------cchHHHHHHHHHHCCC-----
Q 047471 147 KVGYSSDALLVYGEAFE--PNLVSFNALIAGFVE----------------NQQ------PEKGFEVFKLMLRQGL----- 197 (579)
Q Consensus 147 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~----------------~~~------~~~a~~~~~~m~~~g~----- 197 (579)
+.|.++.|..++++... ..+.-++.+.+.|+. .|+ ++-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 99999999999988543 222233333333332 111 1222233333333210
Q ss_pred ------CCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCC-----CChhHHhHHHHHHHhcCChhHHHHHHHhcCCCC
Q 047471 198 ------LPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLE-----SNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKD 266 (579)
Q Consensus 198 ------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 266 (579)
+-+..++..- .-...|+..+....+.+..+.--+ .-...|..+...|-..|+++.|..+|+...+-+
T Consensus 340 VlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 0011111111 112234445555566655543211 122457788899999999999999999988743
Q ss_pred c-------chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC-----------------CHHHHHHHHHHHhCcCChHHH
Q 047471 267 L-------ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRP-----------------DDFTFASILAACAGLASVQHG 322 (579)
Q Consensus 267 ~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p-----------------~~~~~~~ll~~~~~~~~~~~a 322 (579)
- .+|......-.+..+++.|+.+.++...- .-.| +...|+..+..--..|-++..
T Consensus 418 y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 418 YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 2 34666666666778889999988876533 1111 112333444444556788888
Q ss_pred HHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC----CChh-hHHHHHHHHHh---cCChHHHHHHHHH
Q 047471 323 KQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH----RNVV-SWNTIIAAHAN---HRLGGSALKLFEQ 394 (579)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~ 394 (579)
..+++.+.+..+. ++.+.-.....+....-++++.++|++-+. |++. .|+..+.-+.+ ....+.|..+|++
T Consensus 497 k~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8888888887642 333333333344556678999999998743 4443 56665555443 2467899999999
Q ss_pred HHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 047471 395 MKATGIKPDSVTFIGLLTA--CNHAGLVKEGEAYFNSMEKTYGISPD--IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLG 469 (579)
Q Consensus 395 m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 469 (579)
..+ |++|...-+.-|+-+ -.+-|....|..+++++.. ++++. ...|+..|.-....=-......++++. ..-
T Consensus 576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 999 677764333233322 2345778888999998766 44443 245565554333222222333444443 223
Q ss_pred CChhhHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCC--CCccHHHHHHHHHcCCCh
Q 047471 470 QDPIVLGTLL---SACRLRRDVVIGERLAKQLFHLQPT--TTSPYVLLSNLYASDGMW 522 (579)
Q Consensus 470 p~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 522 (579)
|+...-..-+ ..-++.|..+.|..++...-++-++ ++..|...=.--.+.|+-
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 4443333222 2345678888888888777775433 344555555566666663
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=5.7e-10 Score=101.99 Aligned_cols=355 Identities=13% Similarity=0.062 Sum_probs=228.3
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHH--HHHH
Q 047471 132 ASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFA--GGLE 209 (579)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~ 209 (579)
..|...+-.....+-+.|....|...|......-...|.+.+....-..+.+.+.. ... |...|...+. .+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHHHHHH
Confidence 33444444444455667778888887766544333334443332222222222222 111 1122222221 2233
Q ss_pred HhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCC------cchHHHHHHHHHhCCCh
Q 047471 210 ICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKD------LISWNTFIAACSHCADY 283 (579)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 283 (579)
++....+.+.+..-.......|++.+...-+....+.-...++|+|+.+|+++.+.| ..+|+.++-. +..+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH
Confidence 445555667777777777777777777777777777777788888888888887643 3455555433 22222
Q ss_pred H---HHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHH
Q 047471 284 E---KGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKL 360 (579)
Q Consensus 284 ~---~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 360 (579)
. -|..+++ . . ... +.|...+..-|+-.++.++|..+|+...+.+ |....+++.+..-|....+...|.+-
T Consensus 314 kLs~LA~~v~~-i--d-KyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 314 KLSYLAQNVSN-I--D-KYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH-h--c-cCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 1 1222221 1 1 233 3456666667777888888888888888876 56677788888888888888888888
Q ss_pred HHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCC
Q 047471 361 FNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGI 436 (579)
Q Consensus 361 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 436 (579)
++.+++ .|-..|..|.++|.-.+.+.=|+-+|++..+ ++| |+..|..|..+|.+.++.++|++.|.+... .-
T Consensus 387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~ 462 (559)
T KOG1155|consen 387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LG 462 (559)
T ss_pred HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--cc
Confidence 888754 4566788888888888888888888888888 455 578888888888888888888888888887 33
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC------CCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 437 SPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP------LGQDPIVL---GTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
..+...+..|.++|-+.++.++|...|++.. ...++.+. ..|..-+.+.+++++|..+..++..-++.
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 4466778888888888888888888776641 11222222 22344466778888888877777665443
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=4e-11 Score=104.34 Aligned_cols=240 Identities=11% Similarity=0.069 Sum_probs=145.0
Q ss_pred HHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChh--------hHHHHHHHHHhcC
Q 047471 312 ACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVV--------SWNTIIAAHANHR 383 (579)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~ 383 (579)
-|...|-++.|+.+|..+.+.+ .--......|+..|-...++++|+++-+++.+.+.. .|-.|...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 3444444444444444444322 112223344445555555555555554444222211 2333455555667
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047471 384 LGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEY 462 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (579)
+++.|...+.+..+. .|+ ...-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...+
T Consensus 195 ~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 195 DVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 788888888887774 333 223334555677788888888888888775 3333345667777888888888888887
Q ss_pred HHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc---CCChHHHHHHHHHHHhCCCC
Q 047471 463 TKKF-PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS---DGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 463 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 538 (579)
+.++ ...+.+.....+........-.+.|...+.+-+...|.- ..+..++..... .|.+.+-+..++.|....++
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 7775 445565555555555555555677777777777777774 344444443332 45678888888888877777
Q ss_pred CCCCceEEEEcCeEEEEe
Q 047471 539 KEPSYSMIEVQGTFEKFT 556 (579)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~ 556 (579)
..|.+.--..+-..+.|.
T Consensus 351 ~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 351 RKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred hcCCceecccCCcceeee
Confidence 777776666666666665
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.5e-10 Score=104.70 Aligned_cols=259 Identities=13% Similarity=0.011 Sum_probs=206.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHH
Q 047471 270 WNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYA 349 (579)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 349 (579)
...-..-+...+++.+...+.+...+..+. ....+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-.|.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 334445567788999999999998876344 44444455667888888888777777777764 777889999999999
Q ss_pred hcCChHHHHHHHHccCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 047471 350 KCGLISCSYKLFNEMLHRNV---VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEA 425 (579)
Q Consensus 350 ~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 425 (579)
..|+.++|.+.|.+...-|. ..|-....+|.-.|..++|+..+..+-+. -|. ...+--+.--|.+.++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 99999999999999854333 47889999999999999999999988773 222 1122223335888999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047471 426 YFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP--------LGQ-DPIVLGTLLSACRLRRDVVIGERLAK 496 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~ 496 (579)
+|.+... -.|.|+...+.+.-.....+.+.+|..+|+... ..+ =..+++.|..+|.+.+.+++|+..++
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 9999985 445567778888888888999999999998752 111 23568889999999999999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 497 QLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 497 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+++.+.|.++.++..++-+|.-.|+++.|.+.|.+....
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987643
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.8e-10 Score=99.15 Aligned_cols=288 Identities=12% Similarity=0.085 Sum_probs=150.4
Q ss_pred HhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCC---hhHHhHHHHHHHhcCChh
Q 047471 177 VENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESN---PFVGNTIMALYSKFNLIG 253 (579)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 253 (579)
.-++++++|.++|-+|.+.. +-+..+-.+|-+.+.+.|.++.|+.+++.+.++.--+. ..+.-.|..-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34567888999888887731 11222334455555566666666666655554321111 112233444455555555
Q ss_pred HHHHHHHhcCCCC---cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHH
Q 047471 254 EAEKAFRLIEEKD---LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLI 330 (579)
Q Consensus 254 ~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (579)
.|+.+|..+.+.+ ..+...|+..|....+|++|+++-+++.+. +-.+...-
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~e------------------------- 178 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVE------------------------- 178 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhH-------------------------
Confidence 5555555555422 223444555555555555555555555443 22222110
Q ss_pred HccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 047471 331 RMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVV---SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTF 407 (579)
Q Consensus 331 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 407 (579)
-...|..+...+....+++.|..++.+..+.|+. .--.+...+...|+++.|.+.++...+.+..--+.+.
T Consensus 179 ------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 179 ------IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 0123444555555556666666666666433222 2233445566677777777777777665433334556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH-HHhCCCCCChhhHHHHHHHHHh--
Q 047471 408 IGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEY-TKKFPLGQDPIVLGTLLSACRL-- 484 (579)
Q Consensus 408 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~-- 484 (579)
..|..+|...|+.++...++.++.+. .+....-..+.+......-.+.|..+ .+.+..+|+...+..++.....
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccc
Confidence 66666777777777777777766653 23333344444444444444444443 3345556777777766666433
Q ss_pred -cCCHHHHHHHHHHHHh
Q 047471 485 -RRDVVIGERLAKQLFH 500 (579)
Q Consensus 485 -~~~~~~A~~~~~~~~~ 500 (579)
.|..++....++.++.
T Consensus 330 eeg~~k~sL~~lr~mvg 346 (389)
T COG2956 330 EEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccchhhhHHHHHHHHH
Confidence 2334455555555554
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=3.2e-11 Score=109.18 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=160.0
Q ss_pred cchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047471 338 VGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC 414 (579)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 414 (579)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566777888888888888888887743 235567778888999999999999999988853 33566777788888
Q ss_pred hccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 047471 415 NHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGE 492 (579)
Q Consensus 415 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~ 492 (579)
...|++++|...+++..+....+.....+..+..++...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874222334556777888999999999999999886 3344 4567888888899999999999
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 493 RLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 493 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
..++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998888888889999999999999999998887643
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.44 E-value=7.7e-09 Score=100.79 Aligned_cols=413 Identities=10% Similarity=0.024 Sum_probs=257.7
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcc
Q 047471 126 SLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRF 202 (579)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 202 (579)
+....+.-+..+|..|.-+..++|+++.+.+.|++... .....|+.+...+...|.-..|+.+++.-....-.|+..
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33344566788888888899999999999999988553 344568888889999999899999988876543334433
Q ss_pred c-HHHHHHHhc-ccCcccchhHHHHHHHHh--CC--CCChhHHhHHHHHHHhcC-----------ChhHHHHHHHhcCCC
Q 047471 203 S-FAGGLEICS-VSNDLRKGMILHCLTVKC--KL--ESNPFVGNTIMALYSKFN-----------LIGEAEKAFRLIEEK 265 (579)
Q Consensus 203 ~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~ 265 (579)
+ +...-..|. +.+..+++..+-..+... +. ...+..+..+.-+|...- ...++...+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 3 333333343 456666666666665552 11 223344444444443321 123455555555432
Q ss_pred ---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHh
Q 047471 266 ---DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGN 342 (579)
Q Consensus 266 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 342 (579)
|+.+...+.--|+..++.+.|++...+...- +-.-+...|..+.-.+...+++..|+.+.+.....- +.|.....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~ 551 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMD 551 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhch
Confidence 3333333334466677888888888887766 555666777777777777888888888877665431 11111111
Q ss_pred HHHHHHHhcCChHHHHHHHHccCC--------------------------------CChhhHHHHHHHHHhcCChHHHHH
Q 047471 343 ALVNMYAKCGLISCSYKLFNEMLH--------------------------------RNVVSWNTIIAAHANHRLGGSALK 390 (579)
Q Consensus 343 ~li~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~~ 390 (579)
.-+..-..-++.+++......+.. ..+.++..+....... ...+..
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~s 629 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGS 629 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhccc
Confidence 111222223455554443332210 0111221111111100 000000
Q ss_pred HHHHHHHCCCCC--C------HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047471 391 LFEQMKATGIKP--D------SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEY 462 (579)
Q Consensus 391 ~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (579)
-.. +...-+.| + ...|......+.+.+..++|...+.+..+ ..+.....|......+...|++++|.+.
T Consensus 630 e~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 630 ELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 000 11111122 2 12344555668888999999988888876 4556677788788889999999999998
Q ss_pred HHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 463 TKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGER--LAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 463 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
|... ...| ++.+..++...+...|+..-|.. ++..+++++|.|+++|..++.++.+.|+.++|.+.|+...+...
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~- 785 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE- 785 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-
Confidence 7775 5666 56788899999999999888887 99999999999999999999999999999999999998865432
Q ss_pred CCCCceEE
Q 047471 539 KEPSYSMI 546 (579)
Q Consensus 539 ~~~~~~~~ 546 (579)
..|..+|+
T Consensus 786 S~PV~pFs 793 (799)
T KOG4162|consen 786 SNPVLPFS 793 (799)
T ss_pred CCCccccc
Confidence 34444444
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=5.1e-10 Score=100.66 Aligned_cols=277 Identities=13% Similarity=0.107 Sum_probs=184.9
Q ss_pred cCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHH
Q 047471 249 FNLIGEAEKAFRLIEEK---DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQI 325 (579)
Q Consensus 249 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (579)
.|++..|++...+-.+. ....|..-..+--+.|+.+.+-.++.+..+. .-.++.....+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36777777777665442 2234444455566677777777777777644 2344444555555666777777777777
Q ss_pred HHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHH
Q 047471 326 HAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRN-----------VVSWNTIIAAHANHRLGGSALKLFEQ 394 (579)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 394 (579)
.+.+.+.+ +..+.+.....++|.+.|++.....++..+.+.. ..+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777766 5556666777777777777777777777774321 22566666666666666665556665
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCh
Q 047471 395 MKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-P-LGQDP 472 (579)
Q Consensus 395 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~ 472 (579)
.-.. .+-++..-..++.-+...|+.++|.++..+..++ +..|+ ...++ ...+.++.+.-.+..++. . .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 5443 4445566667777788888888888888888876 55555 11112 223445555444444332 1 12345
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..+..|...|.+++.+.+|..+|+.+++..|+ ...|..++.++.+.|+..+|.+..++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77888888899999999999999988888887 68899999999999999999888887763
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=2.4e-09 Score=105.59 Aligned_cols=202 Identities=11% Similarity=0.043 Sum_probs=127.2
Q ss_pred hHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCC
Q 047471 4 SISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGE 83 (579)
Q Consensus 4 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 83 (579)
||..++..|+..|+.+.|- +|..|.-...+.+...++.++....+.++.+.+. +|...+|..|..+|...||
T Consensus 27 tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ayr~hGD 98 (1088)
T KOG4318|consen 27 TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAYRIHGD 98 (1088)
T ss_pred hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHHHhccc
Confidence 7999999999999999998 9998887666666666666666666666555443 4556666666666666666
Q ss_pred hHH---HHHHHHHcccC------------------------CCHhh----------HHHHHHHHh---------------
Q 047471 84 HLL---ALEFFSQMHLL------------------------PNEYI----------FASAISACA--------------- 111 (579)
Q Consensus 84 ~~~---a~~~~~~~~~~------------------------p~~~~----------~~~ll~~~~--------------- 111 (579)
... ..+.++.+... ||..+ |..+++.+.
T Consensus 99 li~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfL 178 (1088)
T KOG4318|consen 99 LILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFL 178 (1088)
T ss_pred hHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHH
Confidence 533 11111111111 11111 111111110
Q ss_pred ccC--ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC----CcchHHHHHHHHHhCCCcchH
Q 047471 112 GIQ--SLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEP----NLVSFNALIAGFVENQQPEKG 185 (579)
Q Consensus 112 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a 185 (579)
++. +..-.+++........-.|++.++..++.+-...|+.+.|..++.+|.+. +..-+-.|+-+ .++...+
T Consensus 179 rqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~ 255 (1088)
T KOG4318|consen 179 RQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVF 255 (1088)
T ss_pred HHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHH
Confidence 000 11112233333322222589999999999999999999999999887643 23333344444 7888888
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHhcccCc
Q 047471 186 FEVFKLMLRQGLLPDRFSFAGGLEICSVSND 216 (579)
Q Consensus 186 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 216 (579)
..+++.|...|+.|++.|+..-+..+..+|.
T Consensus 256 e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 256 EFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999887777766544
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.39 E-value=9.5e-10 Score=98.98 Aligned_cols=292 Identities=10% Similarity=0.022 Sum_probs=174.8
Q ss_pred HHHHHH--hcCChHHHHHHHHHcccCCC--HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 047471 74 MISGHH--QAGEHLLALEFFSQMHLLPN--EYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVG 149 (579)
Q Consensus 74 l~~~~~--~~g~~~~a~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (579)
+..+.. ..|+|.+|.++..+..+..+ ...|.....+.-..|+.+.+-.++.+..+....++....-+..+.....|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 444443 35899999998888766622 23455556667788899999999888887655666667777778888889
Q ss_pred ChhHHHHHhcc---CCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHH
Q 047471 150 YSSDALLVYGE---AFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCL 226 (579)
Q Consensus 150 ~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 226 (579)
+++.|..-+++ +...+.........+|.+.|++.....++..|.+.|+--|...- .+
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l--- 227 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL--- 227 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH---
Confidence 88888877766 33456667788888999999999999999999888764443211 00
Q ss_pred HHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH
Q 047471 227 TVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD 303 (579)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 303 (579)
...++..+++-....+..+.-...|+..+. .++..-..++.-+.+.|+.++|.++..+..+. +..|+.
T Consensus 228 --------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L 298 (400)
T COG3071 228 --------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL 298 (400)
T ss_pred --------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH
Confidence 112233333333333333444445555543 24555555666666677777777777666665 444442
Q ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcC
Q 047471 304 FTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHR 383 (579)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (579)
.++ -.+.+.++...-++..+.-.+.. +.++. .+.+|...|.+.+
T Consensus 299 ~~~----~~~l~~~d~~~l~k~~e~~l~~h-~~~p~-------------------------------L~~tLG~L~~k~~ 342 (400)
T COG3071 299 CRL----IPRLRPGDPEPLIKAAEKWLKQH-PEDPL-------------------------------LLSTLGRLALKNK 342 (400)
T ss_pred HHH----HhhcCCCCchHHHHHHHHHHHhC-CCChh-------------------------------HHHHHHHHHHHhh
Confidence 211 22334445444444444333321 22233 4444555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047471 384 LGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 432 (579)
.|.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 343 ~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 343 LWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55555555555444 355555666666666666666666555555543
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.3e-08 Score=91.82 Aligned_cols=302 Identities=7% Similarity=-0.055 Sum_probs=206.2
Q ss_pred CCCcccHHHHHHHhcc--cCcccchhHHHHHHHH-hCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHH--
Q 047471 198 LPDRFSFAGGLEICSV--SNDLRKGMILHCLTVK-CKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNT-- 272 (579)
Q Consensus 198 ~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 272 (579)
+|...+....+.+++. .++-..+...+-.+.. .-++.+......+..++...|+.++|+..|+...--|+.+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444444554443 3444444444444433 3456677778888889999999999999998876554443222
Q ss_pred -HHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhc
Q 047471 273 -FIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKC 351 (579)
Q Consensus 273 -l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 351 (579)
..-.+.+.|+.++...+...+... ..-+...|..-.......++++.|..+-++.++.+ +.+...+-.-...+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 233455678888777777776543 12233333333344456778888888888877665 34444444445667788
Q ss_pred CChHHHHHHHHccC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHH
Q 047471 352 GLISCSYKLFNEML--H-RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLL-TACN-HAGLVKEGEAY 426 (579)
Q Consensus 352 g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~~~~~~a~~~ 426 (579)
|++++|.-.|+... . -+..+|.-|+.+|...|.+.+|.-+-+...+. ++.+..+...+. ..|. ...--++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 89999988888873 3 46778999999999999999988887776654 344566665552 3332 33345678888
Q ss_pred HHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 427 FNSMEKTYGISPD-IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 427 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
++...+ +.|+ ....+.+...+...|+.+++..++++. ...||....+.|...+...+.+.+|+..|..++.++|+
T Consensus 427 ~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 887764 3444 456677788888899999999988885 56788888888888888899999999999999999998
Q ss_pred CC
Q 047471 505 TT 506 (579)
Q Consensus 505 ~~ 506 (579)
+.
T Consensus 504 ~~ 505 (564)
T KOG1174|consen 504 SK 505 (564)
T ss_pred ch
Confidence 74
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=9e-08 Score=91.48 Aligned_cols=491 Identities=10% Similarity=0.046 Sum_probs=303.1
Q ss_pred chhHHHHHHHHHccCChhHHHHHhcccCC-----CCcccHHHHHHHHHhcCChHHHHHHHHHcccCCCHhhHHHHHHHHh
Q 047471 37 VIVSNHVLNLYAKCGKMILARKVFDEMSE-----RNLVSWSAMISGHHQAGEHLLALEFFSQMHLLPNEYIFASAISACA 111 (579)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~ 111 (579)
+.+|-..+..+..+|++......|++... .....|...+.-.-..+-++-++++|++..+. ++..-.--+..++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-APEAREEYIEYLA 180 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 45666777778888888888888887653 34457888888777888888999999988775 2233677788888
Q ss_pred ccCChHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHhcCC---hhHHHHHhccCCC--CC--cchHHHHHHHHHh
Q 047471 112 GIQSLVKGQQIHAYSLKFG------YASISFVGNSLISMYMKVGY---SSDALLVYGEAFE--PN--LVSFNALIAGFVE 178 (579)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~--~~--~~~~~~li~~~~~ 178 (579)
..+++++|.+.+..++... .+.+-..|.-+.+..++.-+ --....+++.+.. +| ...|++|.+.|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 9999999998888776532 12334455555555554332 2233344555443 23 3469999999999
Q ss_pred CCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCc----------------------ccchhHHHHHHHHhCC----
Q 047471 179 NQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSND----------------------LRKGMILHCLTVKCKL---- 232 (579)
Q Consensus 179 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~---- 232 (579)
.|.+++|.++|++.... ..+...|+.+.++|+.-.. ++....-++.+...+.
T Consensus 261 ~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 99999999999998775 3445556666666543221 1111222222222211
Q ss_pred -------CCChhHHhHHHHHHHhcCChhHHHHHHHhcCC---C------CcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 047471 233 -------ESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE---K------DLISWNTFIAACSHCADYEKGLSVFKEMSND 296 (579)
Q Consensus 233 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 296 (579)
+.+...|..- .-...|+..+....+.+... | -...|..+.+.|-..|+.+.|..+|++..+-
T Consensus 339 sVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 0011111111 11223444444455544432 1 2245888888888999999999999888654
Q ss_pred CCCCCC---HHHHHHHHHHHhCcCChHHHHHHHHHHHHccC-----------CC------CcchHhHHHHHHHhcCChHH
Q 047471 297 HGVRPD---DFTFASILAACAGLASVQHGKQIHAHLIRMRL-----------NQ------DVGVGNALVNMYAKCGLISC 356 (579)
Q Consensus 297 ~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~li~~~~~~g~~~~ 356 (579)
..+-- ..+|......=.+..+++.|..+++......- ++ +..+|...++.-...|-++.
T Consensus 417 -~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 417 -PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred -CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 22221 23444444444566778888887776653211 11 23344555555566777888
Q ss_pred HHHHHHccCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---cCCHHHHHHHHHH
Q 047471 357 SYKLFNEMLHRNVVSWNTII---AAHANHRLGGSALKLFEQMKATGIKPDS-VTFIGLLTACNH---AGLVKEGEAYFNS 429 (579)
Q Consensus 357 A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~ 429 (579)
...+|+.+..--..|-..++ ..+-.+.-++++.+.+++-+..-..|+. ..|+..+.-+.+ ...++.|..+|++
T Consensus 496 tk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 88888887543322222222 2234455678888888877765444553 345555554433 3468999999999
Q ss_pred hHHHhCCCCChhHHH--HHHHHHHhcCChHHHHHHHHhCC--CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 430 MEKTYGISPDIEHFT--CLIDLLGRAGKLLEAEEYTKKFP--LGQD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 430 ~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
..+ +.+|.-.-+- .....-.+.|-...|++++++.. .++. ...|+..|.--...=-+.....+|+++++.-|
T Consensus 576 aL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp 653 (835)
T KOG2047|consen 576 ALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLP 653 (835)
T ss_pred HHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCC
Confidence 998 7776543222 22222335688889999999984 2232 24566666544433345666789999999877
Q ss_pred CCC--ccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 504 TTT--SPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 504 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
++. ......+..-.+.|..+.|+.++..-.+-
T Consensus 654 ~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 654 DSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 643 34445677888899999999999876543
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.29 E-value=3e-08 Score=97.29 Aligned_cols=410 Identities=15% Similarity=0.085 Sum_probs=226.8
Q ss_pred HHHHhcCChHHHHHHHHHcccC-CCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC----
Q 047471 76 SGHHQAGEHLLALEFFSQMHLL-PNEY-IFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVG---- 149 (579)
Q Consensus 76 ~~~~~~g~~~~a~~~~~~~~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 149 (579)
..+...|++++|++.++.-... +|.. ........+.+.|+.++|..++..+++.++ .+..-|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccccc
Confidence 4567788888888888776655 5544 445555666777777777777777777653 23333444444432221
Q ss_pred -ChhHHHHHhccCCC--CCcchHHHHHHHHHhCCCcc-hHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHH
Q 047471 150 -YSSDALLVYGEAFE--PNLVSFNALIAGFVENQQPE-KGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHC 225 (579)
Q Consensus 150 -~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 225 (579)
+.+....++++... |...+...+.-.+.....+. .+...+..+..+|+++
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs-------------------------- 144 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS-------------------------- 144 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch--------------------------
Confidence 23333344433221 22112211211122111222 2223334444444322
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcC------------------CCCc--chHHHHHHHHHhCCChHH
Q 047471 226 LTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIE------------------EKDL--ISWNTFIAACSHCADYEK 285 (579)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------~~~~--~~~~~l~~~~~~~~~~~~ 285 (579)
+++.+-..|......+-..+++.... .|.. .++..+...|...|++++
T Consensus 145 ------------lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 145 ------------LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred ------------HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 22333333332222222222222211 1222 234556777888999999
Q ss_pred HHHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc
Q 047471 286 GLSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM 364 (579)
Q Consensus 286 a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 364 (579)
|++++++.... .|+ +..|..-.+.+-+.|++.+|...++.....+ ..|..+-+-.+..+.++|+.++|.+++...
T Consensus 213 Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 213 ALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 99999988865 566 5667777888889999999999999998876 567777777888899999999999998888
Q ss_pred CCCChh----------hH--HHHHHHHHhcCChHHHHHHHHHHHHC--CCC-------------CCHHHHHHHHHHHhcc
Q 047471 365 LHRNVV----------SW--NTIIAAHANHRLGGSALKLFEQMKAT--GIK-------------PDSVTFIGLLTACNHA 417 (579)
Q Consensus 365 ~~~~~~----------~~--~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~-------------p~~~~~~~ll~~~~~~ 417 (579)
.+++.. .| .....+|.+.|++..|++.|....+. .+. .+..+|..+++..-+.
T Consensus 289 tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l 368 (517)
T PF12569_consen 289 TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKL 368 (517)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHh
Confidence 654421 22 33466788999999998877766542 111 2223344444332221
Q ss_pred CC-------HHHHHHHHHHhHHHhCCCC-----------ChhHHHHHHHHH---HhcCChHHHHHHHH-----------h
Q 047471 418 GL-------VKEGEAYFNSMEKTYGISP-----------DIEHFTCLIDLL---GRAGKLLEAEEYTK-----------K 465 (579)
Q Consensus 418 ~~-------~~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-----------~ 465 (579)
.. ...|.+++-.+........ +..--..+..-. .+....+++...-. +
T Consensus 369 ~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~ 448 (517)
T PF12569_consen 369 RSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKK 448 (517)
T ss_pred hcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccc
Confidence 11 2234444444433200000 000000011000 11111111111110 0
Q ss_pred C----CCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 466 F----PLGQDPIVLGTLLSACRLRRD-VVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 466 ~----~~~p~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
. +.+.|+... ..-+....+ .++|.++++-+.+..|++..+|..-..+|.|.|++--|++.+.+
T Consensus 449 ~~~~~~~~~D~Dp~---GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 449 KEKVEPKKKDDDPL---GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cccccCCcCCCCcc---HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 0 112222222 222334443 58899999999999999999999999999999999998887764
No 64
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.2e-07 Score=87.03 Aligned_cols=447 Identities=11% Similarity=0.036 Sum_probs=241.6
Q ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCc--ccHHHHHHHHHhcC
Q 047471 5 ISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNL--VSWSAMISGHHQAG 82 (579)
Q Consensus 5 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g 82 (579)
..+=++.+...|++++|.+....++..+ +.|...+..=+-++.+.+++++|+.+.+.-..... ..+-.-..+..+.+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 3344566778899999999999999987 35566666667788899999999977766442111 11112234456789
Q ss_pred ChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhcCChhHHHHHhccC
Q 047471 83 EHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASI-SFVGNSLISMYMKVGYSSDALLVYGEA 161 (579)
Q Consensus 83 ~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (579)
+.++|+..++.... .+..+...-.+.|-+.+++++|..+++.+.+++.+.. ...-..++.+ +-.-.+. +.+..
T Consensus 94 k~Dealk~~~~~~~-~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v 167 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR-LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSV 167 (652)
T ss_pred cHHHHHHHHhcccc-cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhc
Confidence 99999999994433 3334566666778899999999999999988765322 1222222211 1111111 34444
Q ss_pred CCCCcchHHHHH---HHHHhCCCcchHHHHHHHHHHCCC-------------CCCccc-HHHHHHHhcccCcccchhHHH
Q 047471 162 FEPNLVSFNALI---AGFVENQQPEKGFEVFKLMLRQGL-------------LPDRFS-FAGGLEICSVSNDLRKGMILH 224 (579)
Q Consensus 162 ~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~~-~~~ll~~~~~~~~~~~a~~~~ 224 (579)
+.....+|..+- ..+...|++.+|++++....+.+. ..+..+ -..+.-.+-..|+..+|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 443344555554 356678999999999988832210 000011 112223455778888888888
Q ss_pred HHHHHhCCCCCh---hHHhHHHHHHHhcCChh-HHHHHHHhcCCC---------------CcchHHHHHHHHHhCCChHH
Q 047471 225 CLTVKCKLESNP---FVGNTIMALYSKFNLIG-EAEKAFRLIEEK---------------DLISWNTFIAACSHCADYEK 285 (579)
Q Consensus 225 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~ 285 (579)
...++......+ ...|.|+.+-....-++ .+...++..... ....-+.++..|. +..+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 888877654332 22333333222221122 122222222111 1111122222222 23334
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHh-CcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHH--
Q 047471 286 GLSVFKEMSNDHGVRPDDFTFASILAACA-GLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFN-- 362 (579)
Q Consensus 286 a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-- 362 (579)
+.++-.... +..|....-..+..+.. +......+..++....+....-...+.-..+......|+++.|.+++.
T Consensus 326 ~r~~~a~lp---~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLP---GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCC---ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444333332 33444433333332222 112355555555555444322223344455566667777777777776
Q ss_pred ------ccC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHH
Q 047471 363 ------EML--HRNVVSWNTIIAAHANHRLGGSALKLFEQMKAT--GIKPD----SVTFIGLLTACNHAGLVKEGEAYFN 428 (579)
Q Consensus 363 ------~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~ 428 (579)
.+. ...+.+...+...+.+.++.+.|..++++.... .-.+. ..++..+...-.+.|+.++|...++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 221 233444555556666666666666666655431 00111 1222333333345577777777777
Q ss_pred HhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 429 SMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
++.+ -.++|..+...++.+|++. +.+.|..+-+.+
T Consensus 483 el~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 483 ELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7766 3456666666666666654 355666665555
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=2.2e-10 Score=99.89 Aligned_cols=225 Identities=11% Similarity=-0.033 Sum_probs=168.8
Q ss_pred HHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--CChhhH-HHHHHHHHhcC
Q 047471 307 ASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--RNVVSW-NTIIAAHANHR 383 (579)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~ 383 (579)
..+..+|.+.|-+.+|+..++...+. .|-+.+|-.|-+.|.+..++..|+.+|.+-++ |..+|| .-+...+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45556666667777776666665554 34555666677777777777777777777643 433343 33555677778
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047471 384 LGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYT 463 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (579)
+.++|.++++...+.. +.+......+...|...++++-|+.+++++.+. |+ -++..|+.+.-+|.-.++++-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888887752 335666666666777788888888888888876 65 46677888888888888888888777
Q ss_pred HhCC---CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 464 KKFP---LGQD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 464 ~~~~---~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
.+.. .+|+ ..+|-.+.......||+..|.+.|+-++..+|++.+.++.|+-+-.+.|+.++|+.+++...+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 7651 2343 46788888888889999999999999999999999999999999999999999999999876543
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=1.6e-09 Score=97.92 Aligned_cols=192 Identities=18% Similarity=0.130 Sum_probs=105.4
Q ss_pred HHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCC
Q 047471 308 SILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRL 384 (579)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 384 (579)
.+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...+...|+
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 33333444444444444444443322 22233344444445555555555555554421 223344555556666666
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047471 385 GGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYT 463 (579)
Q Consensus 385 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (579)
+++|...+++..+....| ....+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666766666666532222 2344555566667777777777777777653 2334556666777777777777777777
Q ss_pred HhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 464 KKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 464 ~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
++. .. +.++..+..+...+...|+.++|..+.+.+.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 193 ERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 665 22 2244555555566666777777777777665543
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=2.1e-09 Score=109.25 Aligned_cols=260 Identities=9% Similarity=-0.011 Sum_probs=183.6
Q ss_pred CcchHHHHHHHHHh-----CCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHh---------CcCChHHHHHHHHHHH
Q 047471 266 DLISWNTFIAACSH-----CADYEKGLSVFKEMSNDHGVRPDD-FTFASILAACA---------GLASVQHGKQIHAHLI 330 (579)
Q Consensus 266 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 330 (579)
+...|...+++... .++.++|+..|++..+. .|+. ..+..+..++. ..+++++|...++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 34455555555321 23467899999998854 5654 34444433332 3355889999999998
Q ss_pred HccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 047471 331 RMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVT 406 (579)
Q Consensus 331 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 406 (579)
+.+ |.+...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|...++++.+. .|+ ...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 876 66778888888899999999999999999843 4 3457888888999999999999999999995 454 223
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChh-hHHHHHHHHH
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPI-VLGTLLSACR 483 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~ 483 (579)
+..++..+...|++++|...++++.+. . +| +...+..+..++...|+.++|...+.++ +..|+.. ..+.+...+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566689999999999998764 2 34 4555777888999999999999999987 3445443 3444445566
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
..| +.|...++++++..-..+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 4888888887774433333333477777778887777666 7776543
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=5.6e-10 Score=92.86 Aligned_cols=162 Identities=12% Similarity=0.010 Sum_probs=134.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
...|.-+|.+.|++..|..-+++.++. .| +..++..+...|.+.|..+.|.+.|+...+ --+-+..+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 445667788999999999999999885 44 467888888889999999999999998886 3345667788888888
Q ss_pred HhcCChHHHHHHHHhCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHH
Q 047471 451 GRAGKLLEAEEYTKKFPLGQ----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 526 (579)
|..|++++|...|++....| -..+|..+..+..+.|+.+.|...|++.++.+|+++.....++..+...|++.+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999998874334 24678888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 047471 527 GARKMLKDSGL 537 (579)
Q Consensus 527 ~~~~~~~~~~~ 537 (579)
.+++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998877665
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=8.5e-10 Score=106.61 Aligned_cols=231 Identities=18% Similarity=0.172 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHc-----c-CCCCcc-hHhHHHHHHHhcCChHHHHHHHHccCC---------
Q 047471 303 DFTFASILAACAGLASVQHGKQIHAHLIRM-----R-LNQDVG-VGNALVNMYAKCGLISCSYKLFNEMLH--------- 366 (579)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--------- 366 (579)
..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++.+|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777777777777777776654 1 122222 223466778888888888888888732
Q ss_pred -CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhC--
Q 047471 367 -RN-VVSWNTIIAAHANHRLGGSALKLFEQMKA-----TGIK-PD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYG-- 435 (579)
Q Consensus 367 -~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 435 (579)
|. ..+++.|..+|.+.|++++|..++++..+ .|.. |. ...++.+...|...+++++|..++....+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 23677778889999999998888887654 1222 22 23456666778999999999999988876543
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-------C--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 047471 436 ISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKFP-------L--GQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFH- 500 (579)
Q Consensus 436 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 500 (579)
+.++ ..+++.|...|...|++++|.++++++- . .+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578899999999999999999998861 1 22 235678888899999999999999888765
Q ss_pred ---cCCCCC---ccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 501 ---LQPTTT---SPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 501 ---~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.+|+.| .+|..|+.+|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345544 568899999999999999999988875
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=1.7e-07 Score=89.82 Aligned_cols=451 Identities=12% Similarity=0.067 Sum_probs=223.0
Q ss_pred HhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHHHhcCChHHH
Q 047471 11 HCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQAGEHLLA 87 (579)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 87 (579)
-|...+++...++..+.+++.. +....+.....-.+...|+-++|........+ .+.++|+.+.-.+-...++++|
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 4555677888888888888743 33344554444556677899999988887765 4667899999888889999999
Q ss_pred HHHHHHcccC-CCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccC---C
Q 047471 88 LEFFSQMHLL-PNEY-IFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEA---F 162 (579)
Q Consensus 88 ~~~~~~~~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 162 (579)
+..|..+... ||+. .+.-+--.-++. |+++......... .
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~Qm-----------------------------------Rd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQM-----------------------------------RDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHH-----------------------------------HhhhhHHHHHHHHHHhh
Confidence 9999988766 4432 332222222222 2332222222221 1
Q ss_pred CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCC-CCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhH
Q 047471 163 EPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGL-LPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNT 241 (579)
Q Consensus 163 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 241 (579)
......|..+..++.-.|++..|..++++..+... .|+...|......+-
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly----------------------------- 190 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY----------------------------- 190 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-----------------------------
Confidence 22344577777777788888889888888877542 455555543222111
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCC--Ccch-HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh-CcC
Q 047471 242 IMALYSKFNLIGEAEKAFRLIEEK--DLIS-WNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACA-GLA 317 (579)
Q Consensus 242 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-~~~ 317 (579)
-.....+.|.+++|.+.+...... |... -..-...+.+.++.++|..++..+... .||...|...+..+. +..
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~ 267 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIK 267 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHh
Confidence 111223333344444433333221 1111 112233344455555555555555433 444444443333332 122
Q ss_pred ChHHHH-HHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047471 318 SVQHGK-QIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHR-NVVSWNTIIAAHANHRLGGSALKLFEQM 395 (579)
Q Consensus 318 ~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m 395 (579)
+.-++. .+|....+.- +.....-..=+.......-.+..-.++....+. -+.++..+...|-.....+-..++...+
T Consensus 268 d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y 346 (700)
T KOG1156|consen 268 DMLEALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSY 346 (700)
T ss_pred hhHHHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHH
Confidence 211222 3333322210 000000000000000000111111122222111 1122222222222111111111111111
Q ss_pred HH----CC----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHH
Q 047471 396 KA----TG----------IKPDS--VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 396 ~~----~~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 458 (579)
.. .| -+|.. .|+-.++..+-..|+++.|..+++..+. ..|+ +..|..-.+.+...|++++
T Consensus 347 ~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 347 QHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred HhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHH
Confidence 11 00 13333 3344555667777888888888877774 2344 3444455567777788888
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CccHHHH--HHHHHcCCChHHHHH
Q 047471 459 AEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT-------TSPYVLL--SNLYASDGMWGDVAG 527 (579)
Q Consensus 459 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l--~~~~~~~g~~~~A~~ 527 (579)
|..++++.. ..||...-.--..-..+.+..++|.+++.+..+.+-+- .-.|+.+ +.+|.++|++.+|++
T Consensus 424 Aa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 424 AAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 888777763 23444433344555566777788887777776655311 1123322 667888888877776
Q ss_pred HHHHHH
Q 047471 528 ARKMLK 533 (579)
Q Consensus 528 ~~~~~~ 533 (579)
-+..+.
T Consensus 504 kfh~i~ 509 (700)
T KOG1156|consen 504 KFHEIE 509 (700)
T ss_pred HHhhHH
Confidence 555443
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=6.4e-08 Score=91.65 Aligned_cols=438 Identities=11% Similarity=0.002 Sum_probs=234.5
Q ss_pred HHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHHHhcCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHH
Q 047471 44 LNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQAGEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQ 120 (579)
Q Consensus 44 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 120 (579)
++.+...|++++|.+....+.. .+...+.+-+-++.+.+++++|+.+.+.-... .+++..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~-------------- 81 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSF-------------- 81 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchh--------------
Confidence 4555666777777776666654 23445566666667777777777655544321 000000
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCC
Q 047471 121 QIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPD 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 200 (579)
+---.-+..+.+..|+|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..--
T Consensus 82 -----------------~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 82 -----------------FFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred -----------------hHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 000112234567777777777644444444555556667777777777777777766543211
Q ss_pred cccH-HHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhH---HHHHHHhcCChhHHHHHHHhc--------CCCCc-
Q 047471 201 RFSF-AGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNT---IMALYSKFNLIGEAEKAFRLI--------EEKDL- 267 (579)
Q Consensus 201 ~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~--------~~~~~- 267 (579)
..-. ..++.+-... .+ +.+......| ..+|.. ....+...|++.+|+++++.. .+.|.
T Consensus 145 d~~~r~nl~a~~a~l----~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~ 215 (652)
T KOG2376|consen 145 DEERRANLLAVAAAL----QV----QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN 215 (652)
T ss_pred HHHHHHHHHHHHHhh----hH----HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1111 1111110000 00 0111111111 112222 233456678888888887766 22111
Q ss_pred ---------chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH---HHhCcCChHH--HHHHHHHHH---
Q 047471 268 ---------ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILA---ACAGLASVQH--GKQIHAHLI--- 330 (579)
Q Consensus 268 ---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~~--- 330 (579)
..--.+.-.+...|+..+|..+|....+. -.+|......... +...-.++-. ++..++...
T Consensus 216 eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 12233455677889999999999988775 3444422222211 1111111111 111111111
Q ss_pred --------HccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCC-hhhHHHHHHHH--HhcCChHHHHHHHHHHHHCC
Q 047471 331 --------RMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRN-VVSWNTIIAAH--ANHRLGGSALKLFEQMKATG 399 (579)
Q Consensus 331 --------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~ 399 (579)
...-......-+.++.+|. +..+.+.++....+... ...+.+++..+ ++...+..+.+++...-+..
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 0000001111133344433 45566666666664432 23344444332 22335677888887776642
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHH--------HhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----
Q 047471 400 IKPDSVTFIGLLTACNHAGLVKEGEAYFN--------SMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF----- 466 (579)
Q Consensus 400 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----- 466 (579)
..-........+......|+++.|.+++. .+.+. +. .+.+...+...+.+.++.+.|..++.+.
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~ 448 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWR 448 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-cc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 22223445555666889999999999999 44433 33 3445667778888888777666666553
Q ss_pred ---CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 467 ---PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 467 ---~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
...+. ..++.-+...-.++|+-++|...++++++.+|++..+...++.+|.+. +.+.|..+-+.+
T Consensus 449 ~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 449 KQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 11221 133344444456789999999999999999999999999999999887 456666655443
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=9.2e-12 Score=80.46 Aligned_cols=50 Identities=26% Similarity=0.577 Sum_probs=47.6
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcc
Q 047471 164 PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSV 213 (579)
Q Consensus 164 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 213 (579)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=2e-11 Score=78.87 Aligned_cols=50 Identities=40% Similarity=0.539 Sum_probs=45.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047471 367 RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH 416 (579)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 416 (579)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998874
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=1.3e-07 Score=90.62 Aligned_cols=378 Identities=9% Similarity=0.033 Sum_probs=215.1
Q ss_pred hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHH
Q 047471 147 KVGYSSDALLVYGEAFE---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMIL 223 (579)
Q Consensus 147 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 223 (579)
..|+-++|....+...+ .+.++|..+.-.+-...++++|++.|+.....+ +.|...+.-+--.-++.++++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444444444444332 223344444444444455555555555554421 11222333333333444444444444
Q ss_pred HHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC-----CCcchHH------HHHHHHHhCCChHHHHHHHHH
Q 047471 224 HCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE-----KDLISWN------TFIAACSHCADYEKGLSVFKE 292 (579)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~------~l~~~~~~~~~~~~a~~~~~~ 292 (579)
.....+.. +.....|..+..++.-.|+...|..+.+...+ ++...+. --.......|..++|++.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 43333321 11223345555556666666666666655543 2222222 123456678888999888877
Q ss_pred hhhCCCCCCCHHHH-HHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHH-HHHHccCC--CC
Q 047471 293 MSNDHGVRPDDFTF-ASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSY-KLFNEMLH--RN 368 (579)
Q Consensus 293 m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~--~~ 368 (579)
-... ..|...+ ..-...+.+.+++++|..++..+...+ |.+...|-.+..++.+-.+.-++. .+|....+ |.
T Consensus 211 ~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 211 NEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 6533 3343333 334455678999999999999999875 555555556666665444434444 56665521 11
Q ss_pred hhhHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh-----CC------
Q 047471 369 VVSWNTI-IAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY-----GI------ 436 (579)
Q Consensus 369 ~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~------ 436 (579)
...-..+ ++...-..-.+..-+++..+.+.|+++--..+.++ +-.-...+ +++++...+ |-
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVA----FLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhH----HHHHHHHHHHhhcccccCCCcc
Confidence 1111111 11111122234555667777888877543333333 22211111 222222110 11
Q ss_pred ------CCChhHH--HHHHHHHHhcCChHHHHHHHHhC-CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 437 ------SPDIEHF--TCLIDLLGRAGKLLEAEEYTKKF-PLGQDP-IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 437 ------~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
+|....| ..++..+-+.|+++.|..+++.. ...|.. ..|..-.+.+...|+.++|..+++++.+++-.|.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 4554444 45678888999999999999986 445543 4455556778889999999999999999998877
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
.+...-+.-..+.++.++|.++...+.+.|.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 7777899999999999999999999987764
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.7e-09 Score=99.12 Aligned_cols=233 Identities=11% Similarity=-0.056 Sum_probs=143.7
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCC
Q 047471 276 ACSHCADYEKGLSVFKEMSNDHGVRPD--DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGL 353 (579)
Q Consensus 276 ~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 353 (579)
.....+..+.++.-+.++.......|+ ...|..+...+...|+.+.|...|++..+.. |.++..|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 344456677788888777754223333 2446666667778888888888888887765 5567778888888888888
Q ss_pred hHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047471 354 ISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSM 430 (579)
Q Consensus 354 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 430 (579)
+++|...|+...+ | +...|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888888743 3 3456667777777888888888888888774 444321122222234566788888888665
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHH--HHHHHh-CCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 431 EKTYGISPDIEHFTCLIDLLGRAGKLLEA--EEYTKK-FPLGQ-----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 431 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
.. ..+|+...+ . ......|+..++ .+.+.+ ....+ ....|..+...+...|++++|+..|+++++.+
T Consensus 192 ~~--~~~~~~~~~-~--~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWGW-N--IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccHH-H--HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 54 333333221 2 222334444333 222221 11111 23467777777888888888888888888888
Q ss_pred C-CCCccHHHHHHHH
Q 047471 503 P-TTTSPYVLLSNLY 516 (579)
Q Consensus 503 p-~~~~~~~~l~~~~ 516 (579)
| +..++...++...
T Consensus 267 ~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 267 VYNFVEHRYALLELA 281 (296)
T ss_pred CchHHHHHHHHHHHH
Confidence 6 4444444444443
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.3e-07 Score=92.50 Aligned_cols=442 Identities=11% Similarity=0.006 Sum_probs=233.9
Q ss_pred CCCCchhHHHHHHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHHHhcCChHHHHHHHHHcccC---C-CHhhHHH
Q 047471 33 IQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQAGEHLLALEFFSQMHLL---P-NEYIFAS 105 (579)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---p-~~~~~~~ 105 (579)
+.-|..+|..+.-++.++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-... | +...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 445666777777777777777777777776553 33455777777777777777777777655433 2 2223333
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHhc--C--CCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCC
Q 047471 106 AISACA-GIQSLVKGQQIHAYSLKFG--Y--ASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQ 180 (579)
Q Consensus 106 ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 180 (579)
.-+.|. +.+..+++..+...++... . ...+..|..+.-+|...-. .++..+ -+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHHH
Confidence 333333 3444555554444444311 0 0111122222222211000 000000 0001
Q ss_pred CcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHH
Q 047471 181 QPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFR 260 (579)
Q Consensus 181 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 260 (579)
...++++.+++..+.+. .|......+---++-.++++.|....++..+.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 459 ~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 12345555666555321 11111222222344455666666666666666555566666666666666666666666665
Q ss_pred hcCCCCcchH---HHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHH--ccCC
Q 047471 261 LIEEKDLISW---NTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIR--MRLN 335 (579)
Q Consensus 261 ~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~ 335 (579)
...+....-+ ..-+..-..-++.++++.....+..-..-.+... ..++-....+....+.- ....
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q----------~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQ----------QTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHh----------hhhhhhhhhhhhcccccCccccc
Confidence 5433111111 1111222234555555554444432100000000 00111111111111110 0111
Q ss_pred CCcchHhHHHHHHHhc---CChHHHHHHHHccCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 047471 336 QDVGVGNALVNMYAKC---GLISCSYKLFNEMLHRN------VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVT 406 (579)
Q Consensus 336 ~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 406 (579)
..+.++..+....... -..+.....+.....|+ ...|......+.+.+..++|...+.+.... .+.....
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~ 686 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASV 686 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHH
Confidence 1222333222222111 11111111111112233 224556667788899999999999888874 2334666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-ChhhHHHHHHHH
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE--YTKKF-PLGQ-DPIVLGTLLSAC 482 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~ 482 (579)
|......+...|.+++|.+.|..... -.|.++....++..++.+.|+..-|.+ ++..+ +..| ++..|..+...+
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 76666778888999999999998875 334457788999999999998887777 77776 5555 789999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
.+.|+.+.|.+.|+-+.++++.+|..
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCCcc
Confidence 99999999999999999999887753
No 77
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=2.8e-09 Score=108.25 Aligned_cols=211 Identities=15% Similarity=0.052 Sum_probs=163.8
Q ss_pred CChHHHHHHHHHHHHccCCCCcchHhHHHHHHHh---------cCChHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCC
Q 047471 317 ASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAK---------CGLISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRL 384 (579)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 384 (579)
+++++|...+++..+.. |.+...+..+..+|.. .+++++|...++++.+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45788999999988765 4445566666655542 2447899999999854 3 55677888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 047471 385 GGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLLGRAGKLLEAEEY 462 (579)
Q Consensus 385 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 462 (579)
+++|...|+++.+. .|+ ...+..+...+...|++++|...++++.+. .|+ ...+..++..+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999995 454 667888888899999999999999999864 344 23334445567778999999999
Q ss_pred HHhCC--CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 463 TKKFP--LGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 463 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+++.. ..|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98862 2353 4456667777889999999999999998888888888888888888888 4888888887653
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=8.8e-10 Score=96.18 Aligned_cols=232 Identities=12% Similarity=0.037 Sum_probs=169.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHh
Q 047471 271 NTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAK 350 (579)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 350 (579)
+.+.++|.+.|-+.+|...|+...++ .|-+.||..+-..|.+..++..|+.++.+-.+.- |-++.......+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 45566667777777777777666654 4555666666677777777777777666655432 3344444556667777
Q ss_pred cCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047471 351 CGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYF 427 (579)
Q Consensus 351 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (579)
.++.++|.++|+...+ .++.....+...|.-.++++-|+.+++++...|+. ++..|+.+.-+|...++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7888888888888754 34445555666788888999999999999998865 6777888888888889999999888
Q ss_pred HHhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 428 NSMEKTYGISPD--IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 428 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
++.... .-.|+ ..+|..|.......|++.-|..-|+-. ...| +...++.|.-.-.+.|++++|..++.-+....|
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 888764 33343 456788888888899999999988876 3334 456788888778889999999999999999888
Q ss_pred CCCcc
Q 047471 504 TTTSP 508 (579)
Q Consensus 504 ~~~~~ 508 (579)
+-.+.
T Consensus 461 ~m~E~ 465 (478)
T KOG1129|consen 461 DMAEV 465 (478)
T ss_pred ccccc
Confidence 75443
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.4e-08 Score=94.42 Aligned_cols=213 Identities=14% Similarity=0.074 Sum_probs=132.9
Q ss_pred ChHHHHHHHHHHHHcc-CCC--CcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHH
Q 047471 318 SVQHGKQIHAHLIRMR-LNQ--DVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKL 391 (579)
Q Consensus 318 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (579)
..+.+..-+.++.... ..| ....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 112 234566677778888888888888887743 3456778888888888888888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 047471 392 FEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQ 470 (579)
Q Consensus 392 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 470 (579)
|++..+ +.|+ ..++..+..++...|++++|.+.++...+. .|+..........+...++.++|.+.+.+....-
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888887 4454 566677777777888888888888888764 3433222222223445677888888886542111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLF-------HLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
++..|. ........|+...+ ..++.+. ++.|..+..|..++.++...|++++|+..+++..+.++
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 122222 12222334444333 2333333 44566677888888888888888888888888776554
No 80
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.4e-06 Score=87.77 Aligned_cols=459 Identities=11% Similarity=0.058 Sum_probs=267.3
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChH
Q 047471 6 SSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHL 85 (579)
Q Consensus 6 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 85 (579)
..|+.-+-+++++.--...++..+..|. -|..++|+|...|..+++-.+- .+++ |...=+..+.-||..+++.
T Consensus 842 deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~--fLke----N~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 842 DELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER--FLKE----NPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH--hccc----CCcchhhHHhhhhcccCCc
Confidence 3456667778888888888999999886 7889999999999877654332 2222 2221122233344444443
Q ss_pred HHHHHHHHcccC-------CCHhhHHHHHHHHhccCChHH-----------HHHHHHHHHHhcCC--CchhHHHHHHHHH
Q 047471 86 LALEFFSQMHLL-------PNEYIFASAISACAGIQSLVK-----------GQQIHAYSLKFGYA--SISFVGNSLISMY 145 (579)
Q Consensus 86 ~a~~~~~~~~~~-------p~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 145 (579)
-|.-.|++-.-. .....|-...+.+....|.+. -+++.+..+..+++ .|+.-.+.-+.++
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAf 994 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAF 994 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHH
Confidence 333322222111 111222222333333333222 23445555555543 3455556667777
Q ss_pred HhcCChhHHHHHhccCC-CCCcc-----hHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccc
Q 047471 146 MKVGYSSDALLVYGEAF-EPNLV-----SFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRK 219 (579)
Q Consensus 146 ~~~g~~~~A~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 219 (579)
...+-..+-+++++++. ++++. .-|.|+-...+. +.....+..+++..-. .|+ +...+...+-+++
T Consensus 995 MtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEE 1066 (1666)
T KOG0985|consen 995 MTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEE 1066 (1666)
T ss_pred HhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHH
Confidence 78888888888887754 33332 233444443333 3445555555553321 122 2233444555666
Q ss_pred hhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCC
Q 047471 220 GMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGV 299 (579)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 299 (579)
|..+|+... .+....+.|+ ..-+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+.
T Consensus 1067 AF~ifkkf~-----~n~~A~~VLi---e~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------ 1130 (1666)
T KOG0985|consen 1067 AFAIFKKFD-----MNVSAIQVLI---ENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------ 1130 (1666)
T ss_pred HHHHHHHhc-----ccHHHHHHHH---HHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------
Confidence 666665432 2222223333 2345677777777666654 57999999999999999998887654
Q ss_pred CCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHH
Q 047471 300 RPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAH 379 (579)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 379 (579)
-|+..|..++..+.+.|.+++..+++...++..-.|... +.|+-+|++.+++.+.++++. .|++.....+.+-|
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRC 1204 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHH
Confidence 356788999999999999999999998888776555544 578999999999888766554 36666666666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEA 459 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (579)
...|.++.|.-+|... ..|..|...+...|+++.|...-+++ .+..+|..+-.+|...+.+.-|
T Consensus 1205 f~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH
Confidence 6777777666555432 23555555666666666665544333 2445566655555555444332
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC
Q 047471 460 EEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD 519 (579)
Q Consensus 460 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 519 (579)
.-. -+.+--...-+.-++..|...|-+++-+.+++..+.+...+...+..|+-+|.+-
T Consensus 1269 QiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1269 QIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred Hhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 210 0011123334455666666666666666666666666665556666666555543
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=3.5e-08 Score=82.38 Aligned_cols=195 Identities=17% Similarity=0.087 Sum_probs=112.5
Q ss_pred HHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCCh
Q 047471 309 ILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLG 385 (579)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 385 (579)
+.-.|...|+...|..-+++..+.. |.+..++..+...|.+.|+.+.|.+-|++..+ .+..+.|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3334445555555555555555443 33444455555555666666666666665532 2334455555556666677
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047471 386 GSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTK 464 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (579)
++|...|++....-.-|. ..||..+.-+..+.|+.+.|.+.|++..+. .+-.......+.+...+.|++..|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777766665322222 445666666666667777777777666652 23334455566666667777777776666
Q ss_pred hC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 465 KF--PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 465 ~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
.. ...+...++...|..-...||.+.+-++=.++.+..|.++
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 65 2335555555556666666777777666666666666654
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=3.6e-07 Score=88.68 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=78.6
Q ss_pred HHhhhhcchhHHHHHHHHHHHhc-----CCCCchhHHHHHHHH-HccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCC
Q 047471 10 HHCSKTKALQQGISLHAAVLKMG-----IQPDVIVSNHVLNLY-AKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGE 83 (579)
Q Consensus 10 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 83 (579)
++|+..|++..|+.+.+.+.-.. +..+...+..+-.++ .-..++.+|..+|-+- . .-..-|..|....+
T Consensus 498 rcfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleq--n---~te~aigmy~~lhk 572 (1636)
T KOG3616|consen 498 RCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQ--N---ATEEAIGMYQELHK 572 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhc--c---cHHHHHHHHHHHHh
Confidence 44556677777766666554211 112222222221222 2224567777766431 1 12234556666677
Q ss_pred hHHHHHHHHHcccCCCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhcc--
Q 047471 84 HLLALEFFSQMHLLPNEY-IFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGE-- 160 (579)
Q Consensus 84 ~~~a~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 160 (579)
|++++.+-+...- |... .-.+-++++...|.-++|-++-. +..--.+-|..|.+.|....|.+....
T Consensus 573 wde~i~lae~~~~-p~~eklk~sy~q~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 573 WDEAIALAEAKGH-PALEKLKRSYLQALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHHHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHH
Confidence 7777776544311 2111 12233344444444444332211 111112345667777776666655432
Q ss_pred CCCCCcchHHHHHHHHHhCCCcchHHHHHHHH
Q 047471 161 AFEPNLVSFNALIAGFVENQQPEKGFEVFKLM 192 (579)
Q Consensus 161 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 192 (579)
....|......+..++.+..-+++|-++|+.+
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 12234444455555556655666666666655
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.12 E-value=4.9e-08 Score=95.82 Aligned_cols=254 Identities=11% Similarity=0.036 Sum_probs=158.4
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhc----
Q 047471 277 CSHCADYEKGLSVFKEMSNDHGVRPDD-FTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKC---- 351 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 351 (579)
+...|++++|++.++.-.. ..+|. .........+.+.|+.++|..++..+.+.+ |.+...|..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4455666666666655432 23333 233344445555666666666666666555 34444444444444221
Q ss_pred -CChHHHHHHHHccCC--CChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047471 352 -GLISCSYKLFNEMLH--RNVVSWNTIIAAHANHRLG-GSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYF 427 (579)
Q Consensus 352 -g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (579)
...+....+|+++.. |.......+.-.+.....+ ..+..++..+...|+++ +|..+-..|.......-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 134455555555522 2222222222222222222 34566677778888653 4444544455555555555555
Q ss_pred HHhHHHh-------------CCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHH
Q 047471 428 NSMEKTY-------------GISPDI--EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 428 ~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 490 (579)
....... .-+|+. .++..+...|-..|++++|++++++. ...|. +..|..-...+.+.|++.+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 5554321 112343 34466678888999999999999975 55664 5677788888999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 491 GERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
|.+.++.+.++++.|..+....+..+.+.|+.++|.+++..+.+.+.
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999977665
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=7e-08 Score=93.58 Aligned_cols=236 Identities=14% Similarity=0.151 Sum_probs=153.1
Q ss_pred hHHhHHHHHHHhcCChhHHHHHHHhcCCC----------Cc-chHHHHHHHHHhCCChHHHHHHHHHhhhC----CC-CC
Q 047471 237 FVGNTIMALYSKFNLIGEAEKAFRLIEEK----------DL-ISWNTFIAACSHCADYEKGLSVFKEMSND----HG-VR 300 (579)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~ 300 (579)
.+...+...|...|+++.|+.+++...+. .. ...+.+...|...+++++|..+|+++... .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666677777777776666654431 11 12345667788889999999999888643 01 11
Q ss_pred CC-HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc---CCCChh-hHHHH
Q 047471 301 PD-DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM---LHRNVV-SWNTI 375 (579)
Q Consensus 301 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~-~~~~l 375 (579)
|. ..+++.|..+|.+.|++++|...++.+.+. ++.. ..+.+. .++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 11 234445555566666666666655544432 1110 112222 34556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHHh----C-CCC-ChhH
Q 047471 376 IAAHANHRLGGSALKLFEQMKAT---GIKPD----SVTFIGLLTACNHAGLVKEGEAYFNSMEKTY----G-ISP-DIEH 442 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~ 442 (579)
...++..+++++|..+++...+. -+.++ ..+++.+...|...|++++|.+++++++... + ..+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 66777888888888888766541 12222 4578888888999999999999999887652 1 112 2345
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC--------CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 443 FTCLIDLLGRAGKLLEAEEYTKKF--------PLGQDP-IVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
++.|...|.+.+++.+|.++|.+. +..|+. .++..|...|...|+++.|.++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 677888888899998888888774 123333 6788999999999999999999998874
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=2.6e-07 Score=82.04 Aligned_cols=457 Identities=11% Similarity=0.043 Sum_probs=232.5
Q ss_pred HHHHHccCChhHHHHHhcccCCC----CcccHHHHHHHHHhcCChHHHHHHHHHcccC--CCHhhHHHHHHHHhccCChH
Q 047471 44 LNLYAKCGKMILARKVFDEMSER----NLVSWSAMISGHHQAGEHLLALEFFSQMHLL--PNEYIFASAISACAGIQSLV 117 (579)
Q Consensus 44 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~ 117 (579)
+.-+....++..|+.+++--..- ...+-.-+..++.+.|++++|+..|+.+... |+...+-.+.....-.|...
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 44455566677777766554321 1111222445566777777777777766554 44444444444444455566
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHH-HHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC
Q 047471 118 KGQQIHAYSLKFGYASISFVGNSLI-SMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQG 196 (579)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 196 (579)
+|+++.... |+....+.|+ ..--+.++-++-..+-+.+..... ---+|.......-.+.+|+++|.+....+
T Consensus 109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~E-dqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLE-DQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 665554422 2233333333 333344444444333333221111 11112222222233566666666665432
Q ss_pred CCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHH
Q 047471 197 LLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE--K-DLISWNTF 273 (579)
Q Consensus 197 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 273 (579)
|+-...+.- +.-+|.+..-++.+.+++..-.. | ++.+.|..
T Consensus 182 --~ey~alNVy----------------------------------~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLk 225 (557)
T KOG3785|consen 182 --PEYIALNVY----------------------------------MALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLK 225 (557)
T ss_pred --hhhhhhHHH----------------------------------HHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHH
Confidence 332222222 22234444445544444433222 2 22333333
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH-HHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcC
Q 047471 274 IAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILA-ACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCG 352 (579)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 352 (579)
.....+.=+...|.+-.+.+.+. +-..-+. ..-+++ .+.--.+-+.|.+++--+.+. .|. .--.|+-.|.+.+
T Consensus 226 acn~fRl~ngr~ae~E~k~ladN-~~~~~~f-~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 226 ACNLFRLINGRTAEDEKKELADN-IDQEYPF-IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQN 299 (557)
T ss_pred HHHHhhhhccchhHHHHHHHHhc-ccccchh-HHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccc
Confidence 33333332333344444444332 1111000 001111 111223455666665544432 222 2234566788999
Q ss_pred ChHHHHHHHHccCCCChhhHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHH
Q 047471 353 LISCSYKLFNEMLHRNVVSWNTIIAAHANHRL-------GGSALKLFEQMKATGIKPDS-VTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 353 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~ 424 (579)
++++|..+.+++...++.-|-.-.-.++..|+ ..-|.+.|+-.-+.+...|. ..-.++..++.-..++++.+
T Consensus 300 dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl 379 (557)
T KOG3785|consen 300 DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL 379 (557)
T ss_pred cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 99999999998865555444333333333332 33455555544444443332 22234445555666889999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC--CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhc
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLG--QDPIVLGTL-LSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
-++..+.. +-...|.. --.+..+++..|.+.+|.++|-++..+ .+..+|.++ .+.|.+.+..+.|..+ +++.
T Consensus 380 ~YlnSi~s-YF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~ 454 (557)
T KOG3785|consen 380 TYLNSIES-YFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKT 454 (557)
T ss_pred HHHHHHHH-HhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhc
Confidence 99888876 23333433 335789999999999999999888411 345555554 4556778888887655 4554
Q ss_pred C-CCCC-ccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCeEEEEee
Q 047471 502 Q-PTTT-SPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGTFEKFTV 557 (579)
Q Consensus 502 ~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (579)
+ |... .....++.-+.+.+.+--|.+.|+.+...++. |. .|..-.|.+.+.+.
T Consensus 455 ~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~--pE-nWeGKRGACaG~f~ 509 (557)
T KOG3785|consen 455 NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT--PE-NWEGKRGACAGLFR 509 (557)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC--cc-ccCCccchHHHHHH
Confidence 4 3322 33445677888899988889999988765543 33 35555555544433
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.9e-07 Score=87.65 Aligned_cols=440 Identities=13% Similarity=0.040 Sum_probs=230.1
Q ss_pred HHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC--CC-cccHHHHHHHHHhcCChH
Q 047471 9 LHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--RN-LVSWSAMISGHHQAGEHL 85 (579)
Q Consensus 9 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~ 85 (579)
-++....|+++.|...|...+...+ +|...|+.-..+|+..|++++|.+=-.+-.+ |+ ...|+....++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 3455667899999999999888775 4888888888999999999888765544443 44 247888888888899999
Q ss_pred HHHHHHHHcccC-CCHh-hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHH-----HHHHhcCChhHHHHHh
Q 047471 86 LALEFFSQMHLL-PNEY-IFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLI-----SMYMKVGYSSDALLVY 158 (579)
Q Consensus 86 ~a~~~~~~~~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~ 158 (579)
+|+.-|++-.+. |+.. .++.+.++.. .+.+. . ..-.++..+..+. +.+.....+..-+..+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~---~-----~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAA---D-----QLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHh---h-----hhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 999998887766 5543 3444444431 11000 0 0011122222111 1111111111111111
Q ss_pred ccCCCCCcchHHHHHHHHHhCCCcchHHHHHH-----HHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCC
Q 047471 159 GEAFEPNLVSFNALIAGFVENQQPEKGFEVFK-----LMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLE 233 (579)
Q Consensus 159 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-----~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 233 (579)
+..+ .. +..+....+...+.-.+. .+...|+.+.... .... ..-..
T Consensus 156 ~~~p----~~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~-----------~~p~----------~~~~~ 206 (539)
T KOG0548|consen 156 QKNP----TS----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM-----------AEPC----------KQEHN 206 (539)
T ss_pred hcCc----Hh----hhcccccHHHHHHHHHHhcCccccccccccccCCCC-----------CCcc----------cccCC
Confidence 1111 00 001111000111111110 0001111100000 0000 00000
Q ss_pred CChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 047471 234 SNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAAC 313 (579)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 313 (579)
+-+..- ...++.. .+.-......+.++..+..++..|++.+...... .-+..-++..-.++
T Consensus 207 ~~~~~~----------d~~ee~~------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~ 267 (539)
T KOG0548|consen 207 GFPIIE----------DNTEERR------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVY 267 (539)
T ss_pred CCCccc----------hhHHHHH------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHH
Confidence 000000 0000000 0000112334455555556666666666666543 22222233333445
Q ss_pred hCcCChHHHHHHHHHHHHccCCCCcchH-------hHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChH
Q 047471 314 AGLASVQHGKQIHAHLIRMRLNQDVGVG-------NALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGG 386 (579)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 386 (579)
...|.+......-....+.|.. ...-| ..+..+|.+.++++.|+..|.+.+.+... -....+....+
T Consensus 268 ~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~E 341 (539)
T KOG0548|consen 268 LERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAE 341 (539)
T ss_pred HhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHH
Confidence 5555555554444444433311 11111 12334666677888888888876432111 11222333445
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 047471 387 SALKLFEQMKATGIKPDS-VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKK 465 (579)
Q Consensus 387 ~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (579)
++++..+...- +.|.. .-...-...+.+.|++..|+..|.++++. .+.|...|..-.-+|.+.|.+..|++-.+.
T Consensus 342 k~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 342 KALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555544433 33432 11222245577889999999999999884 467788899999999999999999987666
Q ss_pred C-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC
Q 047471 466 F-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD 519 (579)
Q Consensus 466 ~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 519 (579)
. ...|+ ...|..-..++....+++.|.+.|++.++.+|++......+.++....
T Consensus 418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 5 44443 344555555666678999999999999999999888888777777753
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.1e-07 Score=82.32 Aligned_cols=309 Identities=13% Similarity=0.061 Sum_probs=168.3
Q ss_pred HHHHHHHHHccCChhHHHHHhcccCCC---CcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHH-HHHHhccC
Q 047471 40 SNHVLNLYAKCGKMILARKVFDEMSER---NLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASA-ISACAGIQ 114 (579)
Q Consensus 40 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~l-l~~~~~~~ 114 (579)
+.+++..+.+..++.+|++++....++ +....+.|..+|....++..|-+.|+++... |...-|..- .+.+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555566666667776666655442 3344556666666777777777777776665 554444321 23344555
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHH----HHHHhcCChhHHHHHhccCC-CCCcchHHHHHHHHHhCCCcchHHHHH
Q 047471 115 SLVKGQQIHAYSLKFGYASISFVGNSLI----SMYMKVGYSSDALLVYGEAF-EPNLVSFNALIAGFVENQQPEKGFEVF 189 (579)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 189 (579)
.+..|.++...|... ....+..+ ......+++..+..++++.+ +.+..+.+.......+.|+++.|++-|
T Consensus 93 i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred ccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 566666665555431 11111111 11234566666777776666 345555555555556777777777777
Q ss_pred HHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCC----
Q 047471 190 KLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEK---- 265 (579)
Q Consensus 190 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 265 (579)
+...+-|---....|+..+. ..+.++...|.+...+++.+|+...+..--.+ .-+... .+.+..+
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm---------~tegiD-vrsvgNt~~lh 236 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGM---------TTEGID-VRSVGNTLVLH 236 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccc---------eeccCc-hhcccchHHHH
Confidence 77766432223344544443 33556677777777777777654333211000 000000 0000000
Q ss_pred ---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHh
Q 047471 266 ---DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGN 342 (579)
Q Consensus 266 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 342 (579)
-+.++|.-...+.+.|+++.|.+.+..|.....-..|+.|...+.-. ...+++....+-+.-+...+ |....+|.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 01234444455667788888888887776443445566666544321 22344555555555555553 34456777
Q ss_pred HHHHHHHhcCChHHHHHHHHccCC
Q 047471 343 ALVNMYAKCGLISCSYKLFNEMLH 366 (579)
Q Consensus 343 ~li~~~~~~g~~~~A~~~~~~~~~ 366 (579)
.++-.||+..-++-|.+++.+-..
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcc
Confidence 788888888888888887776543
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=4.5e-06 Score=82.44 Aligned_cols=218 Identities=11% Similarity=0.117 Sum_probs=119.2
Q ss_pred ccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCC
Q 047471 202 FSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCA 281 (579)
Q Consensus 202 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 281 (579)
..|...-.-+...|+.+.|..+|....+. -++++..+-.|+.++|..+-++-. |..+.-.+.+.|-..|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~---------fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDY---------FSMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhh---------hhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhH
Confidence 34444444555667777777777665543 345566666677777776665543 4455666777788888
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh---------------CcCChHHHHHHHHHHHHccCCCCcchHhHHHH
Q 047471 282 DYEKGLSVFKEMSNDHGVRPDDFTFASILAACA---------------GLASVQHGKQIHAHLIRMRLNQDVGVGNALVN 346 (579)
Q Consensus 282 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 346 (579)
++.+|..+|.+... |...|+.|- ...+.-.|-++|++.-. -+.-.+.
T Consensus 982 ~v~~Av~FfTrAqa----------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVm 1043 (1416)
T KOG3617|consen 982 DVVKAVKFFTRAQA----------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVM 1043 (1416)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHH
Confidence 88888888876642 222233222 12233333344433211 1123445
Q ss_pred HHHhcCChHHHHHHHHcc--------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH----------CCC--
Q 047471 347 MYAKCGLISCSYKLFNEM--------------LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKA----------TGI-- 400 (579)
Q Consensus 347 ~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------~~~-- 400 (579)
.|-+.|.+.+|+++-=+- ...|+...+.-..-++...++++|..++-..++ .|+
T Consensus 1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~v 1123 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRV 1123 (1416)
T ss_pred HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 566777777766642211 123455555555556666666666665543322 111
Q ss_pred --------------CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047471 401 --------------KPDS----VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 401 --------------~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (579)
.|+. .....+...|.++|.+..|.+-|.++-.+ -..++++.+.|+.++
T Consensus 1124 tee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK----------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1124 TEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK----------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred hHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH----------HHHHHHHHhcCCcce
Confidence 1222 23555666788888888887777666332 123556666666553
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=8.3e-07 Score=80.55 Aligned_cols=388 Identities=9% Similarity=0.005 Sum_probs=244.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCCcch-HHHHHHHHHhCC-CcchHHHHHHHHHHCCCCCCcccHHHHHHHhc
Q 047471 135 SFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVS-FNALIAGFVENQ-QPEKGFEVFKLMLRQGLLPDRFSFAGGLEICS 212 (579)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 212 (579)
...-...+.+|-..++-+.|..++...++.-... -|.++..+.+.| +-.++.--+.+....- +.. ...+.+..
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~a----L~~i~~ll 171 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMA----LQVIEALL 171 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chH----HHHHHHHH
Confidence 3444567888888899999999888877533333 333343333332 2222222222222110 000 00000110
Q ss_pred ccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhc--CChhHHHHHHHhcCC-----CCcchHHHHHHHHHhCCChHH
Q 047471 213 VSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKF--NLIGEAEKAFRLIEE-----KDLISWNTFIAACSHCADYEK 285 (579)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~ 285 (579)
+.+ +..+...-..|-....++.......-+.+++.+ ++...+...+-.+.. .|+.....+.+.+...|+.++
T Consensus 172 ~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~ 250 (564)
T KOG1174|consen 172 ELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQ 250 (564)
T ss_pred HHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchH
Confidence 000 000000011111122233333333334444433 333334443333322 366778888999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHH-HHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc
Q 047471 286 GLSVFKEMSNDHGVRPDDFTF-ASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM 364 (579)
Q Consensus 286 a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 364 (579)
|+..|+... .+.|+..+- ......+.+.|+.+....+...+.... ..+...|-.-.......++++.|+.+-++.
T Consensus 251 a~~~Fe~~~---~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~ 326 (564)
T KOG1174|consen 251 AEDIFSSTL---CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKC 326 (564)
T ss_pred HHHHHHHHh---hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999986 345554321 112223467788888888887776543 122222222233445567899999998888
Q ss_pred CCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCCh
Q 047471 365 LHRNVV---SWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDI 440 (579)
Q Consensus 365 ~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 440 (579)
++.+.. .|-.-...+...|+.++|.-.|+..+. +.| +...|..|+.+|...|.+.+|...-+...+ -++-+.
T Consensus 327 I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA 402 (564)
T KOG1174|consen 327 IDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSA 402 (564)
T ss_pred hccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcch
Confidence 654444 343334668899999999999999988 454 688999999999999999999998888877 445566
Q ss_pred hHHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 441 EHFTCLI-DLLG-RAGKLLEAEEYTKKF-PLGQDP-IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 441 ~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
.+...+. ..+. ...--++|.+++++. ..+|+- ...+.+...|...|.++.++.++++.+...|+ ......|++.+
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIM 481 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHH
Confidence 6666553 3332 333457899999885 677764 56777788899999999999999999999998 57888999999
Q ss_pred HcCCChHHHHHHHHHHHhCCC
Q 047471 517 ASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~~ 537 (579)
...+.+.+|...|......++
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCc
Confidence 999999999999988765443
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=4e-07 Score=80.49 Aligned_cols=311 Identities=16% Similarity=0.120 Sum_probs=178.9
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHH---HHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccC
Q 047471 139 NSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALI---AGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSN 215 (579)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 215 (579)
.-+...+...|++..|+.-|....+.|...|.++. ..|...|+..-|+.-|....+ .+||-..-.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR---------- 109 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR---------- 109 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH----------
Confidence 34455566667777777777776666666666554 356667777777766666665 345521110
Q ss_pred cccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhh
Q 047471 216 DLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSN 295 (579)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 295 (579)
..-...+.+.|.+++|..-|+.+.+.++. .|...+|..-+....
T Consensus 110 ------------------------iQRg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~- 153 (504)
T KOG0624|consen 110 ------------------------IQRGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ- 153 (504)
T ss_pred ------------------------HHhchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH-
Confidence 01123345666666666666665543221 000111111000000
Q ss_pred CCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc---CCCChhhH
Q 047471 296 DHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM---LHRNVVSW 372 (579)
Q Consensus 296 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 372 (579)
........+..+...|+...|+.....+.+.. +.|...+..-..+|...|++..|+.-++.. ...++..+
T Consensus 154 ------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ 226 (504)
T KOG0624|consen 154 ------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGH 226 (504)
T ss_pred ------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHH
Confidence 01112233334455667777777777776654 667777777777788888887777766655 33455555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHhHHHhCCCCC
Q 047471 373 NTIIAAHANHRLGGSALKLFEQMKATGIKPDSVT----FIGL---------LTACNHAGLVKEGEAYFNSMEKTYGISPD 439 (579)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 439 (579)
.-+-..+-..|+.+.++...++..+ +.||... |..+ +......++|.++++..+...+. .|.
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~ 301 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPE 301 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCc
Confidence 5666667777787777777777776 4565321 1111 11133455666666666666653 233
Q ss_pred -----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccH
Q 047471 440 -----IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPY 509 (579)
Q Consensus 440 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 509 (579)
...+..+-.++...|++.+|+....++ ...|| ..++.--..+|.....++.|+.-|+++.+.+|+|..+-
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 223444556666777777777777765 44554 56666666777777777888888888888777765443
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=5.8e-06 Score=80.63 Aligned_cols=435 Identities=10% Similarity=0.036 Sum_probs=224.3
Q ss_pred HHHHHHHccCChhHHHHHhcccCCCCcc-cHHHHHHHHHhcCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHH
Q 047471 42 HVLNLYAKCGKMILARKVFDEMSERNLV-SWSAMISGHHQAGEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQ 120 (579)
Q Consensus 42 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 120 (579)
.-+.+|....++++|+.+-+-.-.|... .-.+.++++...|+-++|-++-+.- ..+ ...++.|.+.|.+..|.
T Consensus 562 ~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~sd-----gd~-laaiqlyika~~p~~a~ 635 (1636)
T KOG3616|consen 562 EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKESD-----GDG-LAAIQLYIKAGKPAKAA 635 (1636)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhcccc-----Ccc-HHHHHHHHHcCCchHHH
Confidence 3456777777777777766554433322 1233455556667766665542211 111 23455666667666654
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCC
Q 047471 121 QIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPD 200 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 200 (579)
+.... ..-+..|..+...+...+.+..-++.|-.+|+++..++. .+.+|-+..-+-+|+++-+-. ++..
T Consensus 636 ~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa----fp~e 704 (1636)
T KOG3616|consen 636 RAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA----FPEE 704 (1636)
T ss_pred HhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh----CcHH
Confidence 43211 111223444444444555555555555555555544332 222232222344444433222 1111
Q ss_pred cccHH-HHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcc--hHHHHHHHH
Q 047471 201 RFSFA-GGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLI--SWNTFIAAC 277 (579)
Q Consensus 201 ~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~ 277 (579)
..+.. ..-..+...|+++.|..-|-+... ....+.+......+.+|..+++.+.+.+.. -|..+...|
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhy 775 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHY 775 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHh
Confidence 11110 011122233333333333322110 112334455566677777777777665432 366667777
Q ss_pred HhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHH
Q 047471 278 SHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCS 357 (579)
Q Consensus 278 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 357 (579)
...|+++.|.++|.+. +. ++-.|..|.+.|+|+.|.++-.+.. |...+...|-+-..-+-+.|++.+|
T Consensus 776 an~~dfe~ae~lf~e~----~~------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEA----DL------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred ccchhHHHHHHHHHhc----ch------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhh
Confidence 7777887777777654 22 3344556777777777777655543 3234445555555566677888888
Q ss_pred HHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCC
Q 047471 358 YKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGIS 437 (579)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 437 (579)
.++|-.+..|+. .|..|-+.|..+..+++..+-.-.. -..|...+..-+...|+++.|...|-+...
T Consensus 844 eqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d----- 910 (1636)
T KOG3616|consen 844 EQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----- 910 (1636)
T ss_pred hheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh-----
Confidence 888877777764 3667777888887777766532211 134555556667777777777776655532
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhh-----H-------------------HHHHHHHHhcCCHHHHHH
Q 047471 438 PDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIV-----L-------------------GTLLSACRLRRDVVIGER 493 (579)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-----~-------------------~~l~~~~~~~~~~~~A~~ 493 (579)
|.+-+++|-..+-|++|..+-+.-. ..+..- | ..-+...+..+.++-|..
T Consensus 911 -----~kaavnmyk~s~lw~dayriakteg-g~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afd 984 (1636)
T KOG3616|consen 911 -----FKAAVNMYKASELWEDAYRIAKTEG-GANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFD 984 (1636)
T ss_pred -----HHHHHHHhhhhhhHHHHHHHHhccc-cccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHH
Confidence 3444555555666666655544321 001000 0 011111222333444443
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 494 LAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 494 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+.+-..+ ...+.....++.-+...|++++|-+.+-+..+.
T Consensus 985 lari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 985 LARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 3333222 223556677777888888888886666555443
No 92
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=1.4e-06 Score=85.80 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=109.4
Q ss_pred hhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC-CCcccHHHHHHHHHhcCChHHHHHHHH
Q 047471 14 KTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE-RNLVSWSAMISGHHQAGEHLLALEFFS 92 (579)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 92 (579)
..|.+++|..+|++-.+.. .|=..|...|.+++|.++-+.-.+ .=..+|.....-+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 4567777777777766633 445667777888888877665443 122355566666666778888888887
Q ss_pred HcccC----------------------CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 047471 93 QMHLL----------------------PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGY 150 (579)
Q Consensus 93 ~~~~~----------------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (579)
+.... .|...|..-.+.+-..|+++.|..++..... |-++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 65322 2333444455555667788877777775443 4567777788888
Q ss_pred hhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHH
Q 047471 151 SSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLML 193 (579)
Q Consensus 151 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 193 (579)
.++|.++-++. .|...+..|.+.|-..|++.+|..+|.+..
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888887654 466667778899999999999999998764
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=2.7e-06 Score=85.78 Aligned_cols=264 Identities=10% Similarity=0.017 Sum_probs=131.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHH
Q 047471 266 DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALV 345 (579)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 345 (579)
+...||.|.-. ...|++.-+...|-+-... .+....+|..+...+....+++.|...|....... |.+...+-...
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~A 891 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEA 891 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHH
Confidence 34444444333 3334444444444433322 12233444444444555666666666666665543 33333333333
Q ss_pred HHHHhcCChHHHHHHHHcc-----C---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH---------CCCCCCHHHHH
Q 047471 346 NMYAKCGLISCSYKLFNEM-----L---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKA---------TGIKPDSVTFI 408 (579)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---------~~~~p~~~~~~ 408 (579)
..-...|+.-++..+|..- . -++..-|-........+|+.++-+...++.-. .|.+.+...|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 3333445555555555541 0 12222233333334445554443333222211 12233455666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFT----CLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRL 484 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 484 (579)
.........+.+..|.+...+.+.-.....+...|+ .+.+.+...|.++.|..-+......-+..+...-+.. .-
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ff 1050 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FF 1050 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HH
Confidence 666556666666666665555433211223333444 3445566677888777666655433444433333333 34
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 485 RRDVVIGERLAKQLFHLQPTTTS---PYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 485 ~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.|+++++.+.|++++.+..++.. ....++.+....|.-+.|...+-+...
T Consensus 1051 kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1051 KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 67889999999999887655443 444556666667777777776655543
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=6.8e-08 Score=88.30 Aligned_cols=225 Identities=14% Similarity=0.060 Sum_probs=141.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCC-CCcchHhHHHHHH
Q 047471 270 WNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLN-QDVGVGNALVNMY 348 (579)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 348 (579)
...+.+++...|+++.++ .++... -.|.......+...+...++.+.+..-++........ .+..+......++
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 344556666677665443 333222 2555555555544444434444444443333222222 2222222333456
Q ss_pred HhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCCHHHHH
Q 047471 349 AKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACN----HAGLVKEGE 424 (579)
Q Consensus 349 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~ 424 (579)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 6778888888888776 55666777888899999999999999999873 334 33444444432 234688999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDV-VIGERLAKQLFHL 501 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 501 (579)
.+|+++.+ ..++++.+.+.+..++...|++++|.+++.+. ...| ++.++-.++......|+. +.+.+++.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999876 55678888888899999999999999988775 3334 567777777777777777 7788888888888
Q ss_pred CCCCC
Q 047471 502 QPTTT 506 (579)
Q Consensus 502 ~p~~~ 506 (579)
.|++|
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 88864
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=8.8e-05 Score=75.33 Aligned_cols=237 Identities=14% Similarity=0.169 Sum_probs=157.0
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHH
Q 047471 266 DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNAL 344 (579)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 344 (579)
|+..-+.-++++...+-+.+-+++++++.-....-.. ...-+.++-...+ .+...+.++.+++-..+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------H
Confidence 5666677788888888888889998888654121111 1222233322222 23333333433333222 111 1
Q ss_pred HHHHHhcCChHHHHHHHHccC-------------------------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047471 345 VNMYAKCGLISCSYKLFNEML-------------------------HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATG 399 (579)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 399 (579)
.......+-+++|..+|+... -..+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 222223333444444444320 024567999999999999999998776432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHH
Q 047471 400 IKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLL 479 (579)
Q Consensus 400 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 479 (579)
-|+..|..+++.+.+.|.+++-.+++....++ .-+|.+. +.|+-+|++.++..+..+++. .|+........
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVG 1201 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHh
Confidence 36788999999999999999999999988886 6666654 578999999999988777654 47777778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
.-|...|.++.|.-++.- .+-|..|+..+...|++..|...-++
T Consensus 1202 drcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888889888877764 45577888888888887777654443
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=2.9e-06 Score=82.05 Aligned_cols=293 Identities=10% Similarity=-0.051 Sum_probs=168.0
Q ss_pred hHHHHHHHhcCChhHHHHHHHhcCC---CCcch---HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH-HHHHH---H
Q 047471 240 NTIMALYSKFNLIGEAEKAFRLIEE---KDLIS---WNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD-FTFAS---I 309 (579)
Q Consensus 240 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~---l 309 (579)
..+...+...|+.+.+.+.+....+ ++... .......+...|++++|...+++..+. .|+. ..+.. .
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~~~~~ 86 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD---YPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHhHHH
Confidence 3344445555555555444444322 12111 222233456778888888888887754 3433 23331 1
Q ss_pred HHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChH
Q 047471 310 LAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGG 386 (579)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 386 (579)
.......+....+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1111223445555554443 1111122223334556678888999999999988843 33456777888888999999
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHH-H--HHHHHHHhcCChHHHH
Q 047471 387 SALKLFEQMKATGI-KPDS--VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHF-T--CLIDLLGRAGKLLEAE 460 (579)
Q Consensus 387 ~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~ 460 (579)
+|...+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++..+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999988877422 1232 235567777888999999999999875421111222211 1 2233333444333333
Q ss_pred HH---HHhC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CCccHHHHHHHHHcCCChHH
Q 047471 461 EY---TKKF-PLGQD---PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT---------TTSPYVLLSNLYASDGMWGD 524 (579)
Q Consensus 461 ~~---~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~ 524 (579)
.+ .... +..|. .........++...|+.+.|...++.+....-. ........+.++.+.|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 1111 10011 122224556677889999999999888763311 23445566778889999999
Q ss_pred HHHHHHHHHhCC
Q 047471 525 VAGARKMLKDSG 536 (579)
Q Consensus 525 A~~~~~~~~~~~ 536 (579)
|.+.+......+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=2.1e-08 Score=91.56 Aligned_cols=245 Identities=12% Similarity=0.019 Sum_probs=165.5
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCCh
Q 047471 275 AACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLI 354 (579)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 354 (579)
+-+.-.|++..++.-.+ .... .-..+......+.+++...|+.+.+. .++.+.. +|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~-~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSF-SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTS-TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCC-CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 34455688888886665 3222 22223445556777888888876533 4444433 66666666665555444566
Q ss_pred HHHHHHHHccC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047471 355 SCSYKLFNEML-HR----NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNS 429 (579)
Q Consensus 355 ~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 429 (579)
+.+..-+++.. ++ +..........+...|++++|++++++. .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66776666553 22 2222222234567789999999988653 3566677788899999999999999999
Q ss_pred hHHHhCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 430 MEKTYGISPDIEHFTCLIDLLG----RAGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
|.+ ...| .+...++.++. -.+++.+|..+|+++. ..+++.+.+.+..++...|++++|.++++++++.+|
T Consensus 157 ~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 975 3344 34444555443 2347999999999983 446778888888899999999999999999999999
Q ss_pred CCCccHHHHHHHHHcCCCh-HHHHHHHHHHHhC
Q 047471 504 TTTSPYVLLSNLYASDGMW-GDVAGARKMLKDS 535 (579)
Q Consensus 504 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 535 (579)
.++.+...++.+..-.|+. +.+.+++..+...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999998 6677888887654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=7.4e-07 Score=83.84 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=157.5
Q ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChh----------hHHHH
Q 047471 306 FASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVV----------SWNTI 375 (579)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~l 375 (579)
...+.++..+..+++.+.+-+....... .+...++....+|...|.+..+...-...++..-. .+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4556777778888888888888888776 56666677778888888887777666655332111 22234
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHHHhcC
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIE-HFTCLIDLLGRAG 454 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g 454 (579)
..+|.+.++++.++.+|.+.......|+.. .+....+++....+... -+.|... -...-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 456777788888999888876644443322 23333444444444333 2234331 1222367788999
Q ss_pred ChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 455 KLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 455 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
++..|++.+.++ ...| |...|.....+|.+.|++..|+.-.+..++++|+....|..-+.++....+|++|.+.+++.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 3445 67888888889999999999999999999999999999999999999999999999999998
Q ss_pred HhCC
Q 047471 533 KDSG 536 (579)
Q Consensus 533 ~~~~ 536 (579)
.+..
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 7765
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=6.2e-08 Score=91.69 Aligned_cols=219 Identities=11% Similarity=0.001 Sum_probs=166.6
Q ss_pred HhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCC---ChhhHHHHHHHHHhcCChHHHH
Q 047471 313 CAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHR---NVVSWNTIIAAHANHRLGGSAL 389 (579)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 389 (579)
+.+.|++.+|.-.|+..++.+ |.+...|..|.......++-..|+..+++..+- +....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356677778877787777765 666777777877778888777888888777543 3445556666788888888888
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 390 KLFEQMKATGIK--------PDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 390 ~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
+.++.-+....+ ++..+-.. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888877653211 00000000 12233334556666776666654666888899999999999999999999
Q ss_pred HHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 462 YTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 462 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
-|+.+ ..+| |...|+.|...+....+..+|+..|.+++++.|.-..+++.|+-.|...|.+.||.+.|=....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99986 5667 6788999999999999999999999999999999999999999999999999999998776653
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=2.2e-07 Score=83.87 Aligned_cols=181 Identities=10% Similarity=-0.070 Sum_probs=113.6
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCC--CC-h---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H---HH
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLH--RN-V---VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-S---VT 406 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~ 406 (579)
....+..+...+...|+++.|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+ . .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555666667777777777777776632 22 1 24555666777777777777777777763 232 1 13
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHH
Q 047471 407 FIGLLTACNHA--------GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTL 478 (579)
Q Consensus 407 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 478 (579)
+..+..++... |+.++|.+.++.+.+. .+.+...+..+..... ...... .....+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 33444444433 5667777777777653 1122222222111100 000000 011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 479 LSACRLRRDVVIGERLAKQLFHLQPTTT---SPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
...+...|++.+|...++++++..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999987754 688999999999999999999999887553
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=2.7e-07 Score=79.66 Aligned_cols=148 Identities=7% Similarity=-0.012 Sum_probs=113.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047471 377 AAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 457788888776444322211 11 122346777888888888777 4567888899999999999999
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 457 LEAEEYTKKF-PLGQ-DPIVLGTLLSAC-RLRRD--VVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 457 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++..+..++..+...|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999886 4455 566777777764 56676 59999999999999999999999999999999999999999999
Q ss_pred HHhCCCC
Q 047471 532 LKDSGLK 538 (579)
Q Consensus 532 ~~~~~~~ 538 (579)
+.+...+
T Consensus 170 aL~l~~~ 176 (198)
T PRK10370 170 VLDLNSP 176 (198)
T ss_pred HHhhCCC
Confidence 9876543
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=2.4e-06 Score=74.21 Aligned_cols=387 Identities=10% Similarity=-0.017 Sum_probs=208.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHH-HHHHHhC
Q 047471 103 FASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE--PNLVSFNAL-IAGFVEN 179 (579)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~ 179 (579)
+.+++..+.+..++..+.+++..-.+... .+....+.|..+|.+..++..|...++++.. |...-|... ...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 44555555555666666666555444321 1334455555666666666666666665432 333333221 3445556
Q ss_pred CCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHH
Q 047471 180 QQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAF 259 (579)
Q Consensus 180 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 259 (579)
+.+..|+.+...|.+. |+...-..-+. .......+++..+..+.
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLq---------------------------------aAIkYse~Dl~g~rsLv 135 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQ---------------------------------AAIKYSEGDLPGSRSLV 135 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHH---------------------------------HHHhcccccCcchHHHH
Confidence 6666666666665432 11111000011 11122345566666666
Q ss_pred HhcCC-CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCc
Q 047471 260 RLIEE-KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDV 338 (579)
Q Consensus 260 ~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 338 (579)
++... .+..+.+...-...+.|+++.|.+-|+...+-.|..|-. .|+..+ +..+.|+++.|.+...+++++|+...+
T Consensus 136 eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll-AYniAL-aHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 136 EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL-AYNLAL-AHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh-HHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 66653 344444444444556777777777777776654555543 344333 344567777777777777766543211
Q ss_pred ----------------------------chHhHHHHHHHhcCChHHHHHHHHccCC-----CChhhHHHHHHHHHhcCCh
Q 047471 339 ----------------------------GVGNALVNMYAKCGLISCSYKLFNEMLH-----RNVVSWNTIIAAHANHRLG 385 (579)
Q Consensus 339 ----------------------------~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 385 (579)
..+|.-...+.+.|+++.|.+.+..|+. .|++|...+.-.= ..+++
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p 292 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP 292 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence 1223333345678999999999999953 4666665543322 23556
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHH
Q 047471 386 GSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR-AGKLLEAEEYTK 464 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~ 464 (579)
.+..+-+.-+..... -...||..++-.|++..-++-|-.++-+-....-.-.+...|+ |+++++. .-..++|.+-+.
T Consensus 293 ~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~ 370 (459)
T KOG4340|consen 293 TEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLD 370 (459)
T ss_pred cccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHH
Confidence 666666666666532 3567899999999999999988887765322100011223333 4455544 346777776655
Q ss_pred hCCCCCChhhHHHHHHHH-HhcCC----HHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 465 KFPLGQDPIVLGTLLSAC-RLRRD----VVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 465 ~~~~~p~~~~~~~l~~~~-~~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.+...--...-...+..- .+..+ ...+++-+++.+++.- .+.-..++.|++..++..+.+.|..-.+
T Consensus 371 ~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 371 GLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 542111111111111111 12222 2233344445554431 1234567889999999999999987654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=9.3e-06 Score=89.20 Aligned_cols=323 Identities=10% Similarity=-0.032 Sum_probs=199.1
Q ss_pred ccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC----CC---c-----chHHHHHHHHHhC
Q 047471 213 VSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE----KD---L-----ISWNTFIAACSHC 280 (579)
Q Consensus 213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~~~~ 280 (579)
..|+...+...+..+.......++.........+...|+++++...+..... .+ . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3455554444444332111122333334445566677888988888776532 11 1 1112223445678
Q ss_pred CChHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHhCcCChHHHHHHHHHHHHccCC---C--CcchHhHHHHHHHhc
Q 047471 281 ADYEKGLSVFKEMSNDHGVRPDD----FTFASILAACAGLASVQHGKQIHAHLIRMRLN---Q--DVGVGNALVNMYAKC 351 (579)
Q Consensus 281 ~~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~ 351 (579)
|++++|...+++.... -...+. ...+.+...+...|+++.|...+++.....-. + .......+...+...
T Consensus 466 g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 466 GDPEEAERLAELALAE-LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 9999999999887653 111121 23445555667899999999998887753211 1 123445566678889
Q ss_pred CChHHHHHHHHccCC-------CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhc
Q 047471 352 GLISCSYKLFNEMLH-------RN----VVSWNTIIAAHANHRLGGSALKLFEQMKAT--GIKPD--SVTFIGLLTACNH 416 (579)
Q Consensus 352 g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~ 416 (579)
|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998887622 11 123444556677789999999999887652 11122 3344445566778
Q ss_pred cCCHHHHHHHHHHhHHHhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CChh----hHHHHHHHHHhc
Q 047471 417 AGLVKEGEAYFNSMEKTYGISPDIEHF-----TCLIDLLGRAGKLLEAEEYTKKFPLG--QDPI----VLGTLLSACRLR 485 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~l~~~~~~~ 485 (579)
.|+.++|...+++.............+ ...+..+...|+.+.|.+++...... .... .+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 899999999988886531111111111 11224445688999999988776311 1111 134556667888
Q ss_pred CCHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 486 RDVVIGERLAKQLFHLQPT------TTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 486 ~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
|++++|...++++.+.... .......++.++.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998875321 22356678889999999999999998887654
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=3.8e-07 Score=74.41 Aligned_cols=121 Identities=9% Similarity=0.002 Sum_probs=73.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 047471 390 KLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL 468 (579)
Q Consensus 390 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 468 (579)
.++++..+ +.|+. +..+...+...|++++|...|+.+.. --+.+...+..+..++...|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 23432 33445556666777777777766665 33445566666666666677777777666665 23
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 469 GQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 469 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
.| ++..+..+..++...|+.++|+..++++++..|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33 5556666666666677777777777777777777666666555544
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=1.4e-06 Score=90.79 Aligned_cols=200 Identities=15% Similarity=0.093 Sum_probs=145.4
Q ss_pred CCCcchHhHHHHHHHhcCChHHHHHHHHccCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 047471 335 NQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--------RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVT 406 (579)
Q Consensus 335 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 406 (579)
|.+...|-..|..+...++.++|.++.++++. .-...|.++++.....|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44455666677777777888888888777742 12346777777777777777788888888773 222445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---ChhhHHHHHHHH
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ---DPIVLGTLLSAC 482 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~ 482 (579)
|..|...|.+.+.+++|.++++.|.++++ -....|..++..+.+..+-+.|..++.+. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67777778888888888888888888655 55667778888888888888888887774 2223 334444555556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
.+.||.+.+..+|+..+...|.....|..+++.-.+.|+.+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 67888888888888888888888888888888888888888888888888776654
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=3.9e-05 Score=77.76 Aligned_cols=174 Identities=14% Similarity=0.057 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHhcCCCC-chhHHHHHHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHHHhcCChHHHHHHHHH
Q 047471 18 LQQGISLHAAVLKMGIQPD-VIVSNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQAGEHLLALEFFSQ 93 (579)
Q Consensus 18 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 93 (579)
...|...|-+..+.. |+ ...|..|...|+...+...|.+.|+...+ .+..++..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555555555544433 33 44788888999888888889999988765 4667888899999999999999988544
Q ss_pred cccC-CCH-hhHHH--HHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcch-
Q 047471 94 MHLL-PNE-YIFAS--AISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVS- 168 (579)
Q Consensus 94 ~~~~-p~~-~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 168 (579)
..+. |-. ..++. +--.+...++...+..-|+...+.. +.|...|..+..+|.++|++..|+++|.+....+...
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 4433 211 12222 3334567788888888888777644 2366788999999999999999999998755433322
Q ss_pred HHHH--HHHHHhCCCcchHHHHHHHHHH
Q 047471 169 FNAL--IAGFVENQQPEKGFEVFKLMLR 194 (579)
Q Consensus 169 ~~~l--i~~~~~~~~~~~a~~~~~~m~~ 194 (579)
|... .-..+..|.+.++++.+.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2222 2234567889999888877654
No 107
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=9.5e-06 Score=75.35 Aligned_cols=178 Identities=8% Similarity=-0.018 Sum_probs=113.6
Q ss_pred ChHHHHHHHHccCC---CChhhHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047471 353 LISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLG--GSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYF 427 (579)
Q Consensus 353 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (579)
++++++..++++.+ .+..+|+.....+.+.|+. ++++.+++++.+.. +-|..+|.....++...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555555532 2223344333334444442 56777777777743 225677777777777778888888888
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHh-CCCCC-ChhhHHHHHHHHHhc----CCHHHHHHH
Q 047471 428 NSMEKTYGISPDIEHFTCLIDLLGRA---GKL----LEAEEYTKK-FPLGQ-DPIVLGTLLSACRLR----RDVVIGERL 494 (579)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~----~~~~~A~~~ 494 (579)
+++++. .+-|...|+....++.+. |.. +++.++..+ +...| +...|+.+...+... +...+|.+.
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 888774 344555666655555443 222 355666534 44455 567787777777663 345678899
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHcCC------------------ChHHHHHHHHHHH
Q 047471 495 AKQLFHLQPTTTSPYVLLSNLYASDG------------------MWGDVAGARKMLK 533 (579)
Q Consensus 495 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 533 (579)
+.++.+.+|.++.+...|+.+|.... ..++|.++++.+.
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 99988889999999999999998643 2356777777773
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=3.9e-07 Score=74.29 Aligned_cols=108 Identities=8% Similarity=-0.060 Sum_probs=92.4
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...+..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555554 2344 4666788899999999999999986 4445 67888999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 503 PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 503 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
|+++..+..++.++...|+.++|+..++...+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999877543
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.71 E-value=0.0003 Score=66.82 Aligned_cols=396 Identities=12% Similarity=0.089 Sum_probs=200.7
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHhcccCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHHHHH
Q 047471 34 QPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--R-NLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASAISA 109 (579)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~ 109 (579)
+-|+.+|+.|++-+..+ .++++...++++.. | ....|..-|..-.+..+++.+..+|.+.... .+.+.|..-+..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 46899999999999877 89999999999986 4 5568999999999999999999999998776 666666665554
Q ss_pred Hhc-cCChHH----HHHHHHHHH-HhcCCCch-hHHHHHHHH---------HHhcCChhHHHHHhccCCC-C--------
Q 047471 110 CAG-IQSLVK----GQQIHAYSL-KFGYASIS-FVGNSLISM---------YMKVGYSSDALLVYGEAFE-P-------- 164 (579)
Q Consensus 110 ~~~-~~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~-------- 164 (579)
-.+ .+.... ..+.++..+ +.|+.+-. .+|+..+.. |....+++...++++++.. |
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 432 223322 223333333 35554433 345544433 3344466667777777543 1
Q ss_pred -CcchHHHHHHH-------HHhCCCcchHHHHHHHHHH--CCCCCCccc---------------HHHHHHHhcccCcc--
Q 047471 165 -NLVSFNALIAG-------FVENQQPEKGFEVFKLMLR--QGLLPDRFS---------------FAGGLEICSVSNDL-- 217 (579)
Q Consensus 165 -~~~~~~~li~~-------~~~~~~~~~a~~~~~~m~~--~g~~p~~~~---------------~~~ll~~~~~~~~~-- 217 (579)
|-..|..=|+. --+...+..|.++++++.. +|..-+..+ |..+|..-...+--
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 11112111111 1133456677777777643 343222222 11122211111100
Q ss_pred ------cchhHHHHH-HHHhCCCCChhHH-----hHHHHHHHhcCCh-------hHHHHHHHhcCCC----CcchHHHHH
Q 047471 218 ------RKGMILHCL-TVKCKLESNPFVG-----NTIMALYSKFNLI-------GEAEKAFRLIEEK----DLISWNTFI 274 (579)
Q Consensus 218 ------~~a~~~~~~-~~~~~~~~~~~~~-----~~l~~~~~~~~~~-------~~a~~~~~~~~~~----~~~~~~~l~ 274 (579)
....-++++ +.-.+..|+.... ....+.+.+.|+. +++.+++++..+. +...|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 1112222222110 0111122223332 2333333333221 122222222
Q ss_pred HHH---HhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCC-CcchHhHHHHHHHh
Q 047471 275 AAC---SHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQ-DVGVGNALVNMYAK 350 (579)
Q Consensus 275 ~~~---~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~ 350 (579)
..- .+....+.....+++......+.|+. +|...|....+..-++.|..+|.++.+.+..+ ++.++++++..||
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 110 01112444445555554442333432 34555555556666666666666666665444 5555566665554
Q ss_pred cCChHHHHHHHHccCC--CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHH
Q 047471 351 CGLISCSYKLFNEMLH--RNV-VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD--SVTFIGLLTACNHAGLVKEGEA 425 (579)
Q Consensus 351 ~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~ 425 (579)
+++..-|.++|+--.+ +|. .--...+.-+...|+-..+..+|++....++.|+ ...|..++..-+.-|++..+.+
T Consensus 414 skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 3556666666665432 222 2223445555555666666666666666555544 3456666666666666666666
Q ss_pred HHHHhHH
Q 047471 426 YFNSMEK 432 (579)
Q Consensus 426 ~~~~~~~ 432 (579)
+-++...
T Consensus 494 lekR~~~ 500 (656)
T KOG1914|consen 494 LEKRRFT 500 (656)
T ss_pred HHHHHHH
Confidence 6655554
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=3.5e-05 Score=74.56 Aligned_cols=267 Identities=12% Similarity=0.008 Sum_probs=168.9
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHH-HHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhH---
Q 047471 268 ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFA-SILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNA--- 343 (579)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 343 (579)
..|..+...+...|+.+.+...+....+.....++..... .....+...|+++.+..+++...+.. |.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 4566666777777888887777776654422233432222 22334567899999999999988764 444444332
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047471 344 LVNMYAKCGLISCSYKLFNEMLHRNV---VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLV 420 (579)
Q Consensus 344 li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 420 (579)
........+..+.+.+.+......++ .....+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 11222234566666666665432222 233455667889999999999999999953 33466778888889999999
Q ss_pred HHHHHHHHHhHHHhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHH------HHHHHHHhcCCHHHH
Q 047471 421 KEGEAYFNSMEKTYGISPDI--EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLG------TLLSACRLRRDVVIG 491 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~------~l~~~~~~~~~~~~A 491 (579)
++|..++++........|+. ..|..+...+...|++++|..++++. ...|....+. .++.-+...|....+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999988742222333 34557888999999999999999996 2223111111 223333445544444
Q ss_pred HHH---HHHHHhcCCCC--CccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 492 ERL---AKQLFHLQPTT--TSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 492 ~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
.++ ........|.. +......+.++...|+.++|...++.+....
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 443 22211111221 1222367888899999999999999987543
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.70 E-value=2.3e-05 Score=69.68 Aligned_cols=283 Identities=13% Similarity=0.025 Sum_probs=146.3
Q ss_pred HHHhcCChhHHHHHhccCCCCCcchHHHHH---HHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccch
Q 047471 144 MYMKVGYSSDALLVYGEAFEPNLVSFNALI---AGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKG 220 (579)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 220 (579)
.|...|+...|+.-|.+..+.....+.+-+ ..+.++|.++.|..-|+...+.. |+..+-. .+..+.-..++-
T Consensus 81 ~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~---eaqskl~~~~e~ 155 (504)
T KOG0624|consen 81 VYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVL---EAQSKLALIQEH 155 (504)
T ss_pred HHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhH---HHHHHHHhHHHH
Confidence 455555555555555554332222222222 35778899999999998888753 4322211 111100000000
Q ss_pred hHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCC
Q 047471 221 MILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEK---DLISWNTFIAACSHCADYEKGLSVFKEMSNDH 297 (579)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 297 (579)
......+..+...|+...|+.....+.+- |...+..-..+|...|++..|+.-++...+.
T Consensus 156 ----------------~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL- 218 (504)
T KOG0624|consen 156 ----------------WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL- 218 (504)
T ss_pred ----------------HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Confidence 00111222333445555555555544432 3334444445555555555555544444322
Q ss_pred CCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHH
Q 047471 298 GVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIA 377 (579)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 377 (579)
-.-+..++..+-..+...|+.+.++...++..+.+ ||-..+-.. | .++.+..+.++. +.
T Consensus 219 -s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~---Y---KklkKv~K~les------------~e 277 (504)
T KOG0624|consen 219 -SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPF---Y---KKLKKVVKSLES------------AE 277 (504)
T ss_pred -cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHH---H---HHHHHHHHHHHH------------HH
Confidence 11222333333334444555555544444444332 222111100 0 011111111111 12
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKPDSV---TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG 454 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (579)
.....++|.++++..+...+........ .+..+-.++...+++.+|++...++.. -.+.|+.++.--..+|.-..
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhH
Confidence 2456688899999998888754332233 344556667888999999999999985 33344888888889999999
Q ss_pred ChHHHHHHHHhC-CCCCC
Q 047471 455 KLLEAEEYTKKF-PLGQD 471 (579)
Q Consensus 455 ~~~~A~~~~~~~-~~~p~ 471 (579)
.++.|+.-|++. ..+++
T Consensus 356 ~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999887 34443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.6e-06 Score=84.60 Aligned_cols=220 Identities=12% Similarity=-0.033 Sum_probs=170.7
Q ss_pred CCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC--CCChhhHHHHH
Q 047471 299 VRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML--HRNVVSWNTII 376 (579)
Q Consensus 299 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~ 376 (579)
.+|--..-..+...+.+.|-...|..+++++.. +..++.+|...|+..+|..+..+-. +|++..|..+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 344444445566677788888888888886653 4568889999999999988877764 46777788887
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047471 377 AAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
+......-+++|.++.+..-.. .-..+.....+.+++.++.+.|+.-.+. .+....+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhh
Confidence 7777666777888777654331 1112222234578999999999888774 344567788888888999999
Q ss_pred HHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 457 LEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 457 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
+.|.+.|... ...|| ...|+.+-.+|.+.++-.+|...+.++++-+-.+...|....-+....|.|++|.+.+..+.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999988875 56675 578999999999999999999999999999988899999999999999999999999998875
Q ss_pred CC
Q 047471 535 SG 536 (579)
Q Consensus 535 ~~ 536 (579)
..
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 43
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.65 E-value=7.2e-05 Score=82.29 Aligned_cols=329 Identities=9% Similarity=-0.033 Sum_probs=204.9
Q ss_pred HHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCC------CC--hhHHhHHHHHH
Q 047471 175 GFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLE------SN--PFVGNTIMALY 246 (579)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~ 246 (579)
.....|+++.+...+..+.......+..........+...|+++.+...+......--. +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777776666665422111112222233344556778888888888776543111 11 11222334556
Q ss_pred HhcCChhHHHHHHHhcCC--C--Cc----chHHHHHHHHHhCCChHHHHHHHHHhhhCC---CC-CCCHHHHHHHHHHHh
Q 047471 247 SKFNLIGEAEKAFRLIEE--K--DL----ISWNTFIAACSHCADYEKGLSVFKEMSNDH---GV-RPDDFTFASILAACA 314 (579)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~-~p~~~~~~~ll~~~~ 314 (579)
...|++++|...++.... + +. ...+.+...+...|++++|...+.+..... |. .+...+...+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 788999999998887543 1 21 234556667788999999999998876420 11 111234455566778
Q ss_pred CcCChHHHHHHHHHHHHc----cCCC---CcchHhHHHHHHHhcCChHHHHHHHHccCC------C--ChhhHHHHHHHH
Q 047471 315 GLASVQHGKQIHAHLIRM----RLNQ---DVGVGNALVNMYAKCGLISCSYKLFNEMLH------R--NVVSWNTIIAAH 379 (579)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~ 379 (579)
..|+++.|...+++.... +... ....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998887653 2111 122344556667778999999999888732 1 122344456678
Q ss_pred HhcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChh----HHHHHHHH
Q 047471 380 ANHRLGGSALKLFEQMKATG--IKPDSV--TF--IGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIE----HFTCLIDL 449 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~ 449 (579)
...|++++|...+++..... ...... .. ...+..+...|+.+.|..++...... . ..... .+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHH
Confidence 88999999999998886521 111110 11 11123345578999999998776531 1 11111 13456778
Q ss_pred HHhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 450 LGRAGKLLEAEEYTKKFP-------LGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
+...|++++|...+++.. ..++ ..+...+..++...|+.++|...+++++++....
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 889999999999888752 1111 2345566677889999999999999999977543
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.00072 Score=68.34 Aligned_cols=132 Identities=13% Similarity=0.137 Sum_probs=87.0
Q ss_pred HHhcCChHHHHHHHHHcccC-CCHhhHHHHHHHH--hccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHH
Q 047471 78 HHQAGEHLLALEFFSQMHLL-PNEYIFASAISAC--AGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDA 154 (579)
Q Consensus 78 ~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (579)
....+++.+|+....++.+. |+ ..|..++.++ .+.|..++|..+++.....+.. |..+...+-.+|.+.|+.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 45567777888777777666 54 3455566664 4778888888777766654443 677888888888899999999
Q ss_pred HHHhccCCC--CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhc
Q 047471 155 LLVYGEAFE--PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICS 212 (579)
Q Consensus 155 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 212 (579)
..++++... |+......+..+|.+-+++.+-.+.--+|-+ .++-+.+.|..++....
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 999988765 5544455556677777776654444333333 23444556666665443
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=6.6e-06 Score=70.69 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=93.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG 454 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (579)
+-..+...|+-+....+....... .+.|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 344455556666665555554332 122334444455666666666666666666665 55666666666666666666
Q ss_pred ChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHH
Q 047471 455 KLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARK 530 (579)
Q Consensus 455 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (579)
++++|..-|.+. .+.| ++...+.+...+...||.+.|..++..+....+.+..+-..|+.+....|++.+|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666655554 3333 455666666666666777777777776666666666666667777777777766665543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=6.7e-06 Score=80.45 Aligned_cols=189 Identities=14% Similarity=0.074 Sum_probs=160.4
Q ss_pred cCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047471 333 RLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLT 412 (579)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 412 (579)
+.+|-...-..+...+...|-...|..+|++. ..|.-.+.+|+..|+..+|..+..+-.+ -+|++.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666777788899999999999999999974 4566788899999999999999988877 4789999999998
Q ss_pred HHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHH
Q 047471 413 ACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 490 (579)
......-+++|.++.+....+ .-..+.....+.++++++.+.|+.- ..+| ...+|..+..+..+.+++..
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888888999888776542 2223333445579999999998874 5555 67899999888999999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 491 GERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
|.+.|.....++|++...|+.+..+|.+.|+..+|...+++..+..
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999998776
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=4.4e-08 Score=56.53 Aligned_cols=34 Identities=38% Similarity=0.652 Sum_probs=29.4
Q ss_pred hcCCCCchhHHHHHHHHHccCChhHHHHHhcccC
Q 047471 31 MGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMS 64 (579)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 64 (579)
.|+.||..+|++|+++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778999999999999999999999999998874
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=2.7e-06 Score=73.02 Aligned_cols=171 Identities=17% Similarity=-0.003 Sum_probs=134.3
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhhHHH
Q 047471 401 KPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF--PLGQDPIVLGT 477 (579)
Q Consensus 401 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 477 (579)
.|+ ... ..+-..+...|+-+....+...... ..+.|......++....+.|++.+|...+++. ..++|...|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 453 333 5566677788888888888877654 44566677778999999999999999999997 34568899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCC------ceEEEEc--
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPS------YSMIEVQ-- 549 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~-- 549 (579)
+..+|-+.|++++|...+.+++++.|.++.++..++..|.-.|+.+.|..++......+... +. ..|...+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhcCCh
Confidence 99999999999999999999999999999999999999999999999999999987654421 21 2333232
Q ss_pred CeEEEEeecccCCcchhhHHHHHHhh
Q 047471 550 GTFEKFTVAEFSHSKIGEINYMLKTL 575 (579)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (579)
..+..+.+.+...|+..+.+.+|..+
T Consensus 219 ~~A~~i~~~e~~~~~~~~~~~~l~~~ 244 (257)
T COG5010 219 REAEDIAVQELLSEQAANNVAALRAA 244 (257)
T ss_pred HHHHhhccccccchhHhhHHHHHHHh
Confidence 23456666777777777777776554
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=4.2e-06 Score=79.66 Aligned_cols=244 Identities=12% Similarity=0.027 Sum_probs=175.0
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChH
Q 047471 276 ACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLIS 355 (579)
Q Consensus 276 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (579)
-+.+.|+..+|.-.|+..+++ -+-+...|..|.......++-..|+..+.+..+.. |.+..+...|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 456788888888888888765 23345677777777888888888888888888776 556677778888888888888
Q ss_pred HHHHHHHccCCCChh-hHHHHH---------HHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047471 356 CSYKLFNEMLHRNVV-SWNTII---------AAHANHRLGGSALKLFEQMK-ATGIKPDSVTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 356 ~A~~~~~~~~~~~~~-~~~~l~---------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 424 (579)
.|.+.|+..+...+. .|.... ..+.....+....++|-++. ..+..+|+.....|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 888888876221100 000000 11122222344555555444 4554577777777777788899999999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
..|+.++. --|-|...||.|.-.++...+.++|+..|++. .++|. ..+...|.-+|...|.+++|.+.|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999986 33456788999999999999999999999987 67785 4677788888999999999999999999877
Q ss_pred CCC----------CccHHHHHHHHHcCCChHH
Q 047471 503 PTT----------TSPYVLLSNLYASDGMWGD 524 (579)
Q Consensus 503 p~~----------~~~~~~l~~~~~~~g~~~~ 524 (579)
+.+ ..+|..|=.++.-.++.+-
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 541 1355555555555665553
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=5.9e-05 Score=64.95 Aligned_cols=249 Identities=13% Similarity=0.017 Sum_probs=142.8
Q ss_pred HHhcCChhHHHHHHHhcCCC--CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHH
Q 047471 246 YSKFNLIGEAEKAFRLIEEK--DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGK 323 (579)
Q Consensus 246 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (579)
+.-.|++..++..-...... +...-.-+-++|...|++..... +... |-.|....+..+-......++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~--~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE--GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc--ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 34445666555544443322 23333445566776676544332 2222 22444444444444444444433333
Q ss_pred -HHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 047471 324 -QIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP 402 (579)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 402 (579)
.+.+.+.......+......-...|++.|++++|.+...... +......=+..+.+..+++-|.+.+++|.+- -
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 334444444333333333333456777888888888877732 3333333344566677788888888888762 2
Q ss_pred CHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhhHH
Q 047471 403 DSVTFIGLLTACNH----AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF--PLGQDPIVLG 476 (579)
Q Consensus 403 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~ 476 (579)
+..|.+.|..++.+ .+.+..|.-+|+++.+ ..+|+..+.+-...++...|++++|..++++. +...++.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 55666666666543 4567788888888876 46777777777777778888888888877776 3334666666
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhcCCCCC
Q 047471 477 TLLSACRLRRD-VVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 477 ~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~ 506 (579)
.++-.-...|. .+...+.+.++....|..+
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66555545544 3445567777777777654
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=7.8e-06 Score=70.61 Aligned_cols=155 Identities=13% Similarity=0.082 Sum_probs=114.0
Q ss_pred HHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047471 345 VNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 424 (579)
+-.|...|+++.+....+.+..+. ..+...++.+++...+++..+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345667777666544443332221 01223566788888888877753 446888888989999999999999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLL-GRAGK--LLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLF 499 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 499 (579)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| ++..+..+...+...|++++|+..|++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999987 3455777888888864 67777 58999999987 4455 66778888888999999999999999999
Q ss_pred hcCCCCCccHH
Q 047471 500 HLQPTTTSPYV 510 (579)
Q Consensus 500 ~~~p~~~~~~~ 510 (579)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99988654443
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=2.2e-05 Score=73.52 Aligned_cols=117 Identities=21% Similarity=0.138 Sum_probs=74.0
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIG 491 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A 491 (579)
+...|++++|+..++.++. ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ +..+..+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3445667777777777665 34445555555666677777777777777665 34454 44555666667777777777
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 492 ERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 492 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
+.+++.....+|++|..|..|+.+|...|+..+|....-+.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777766666666655555444443
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.52 E-value=1.1e-06 Score=70.09 Aligned_cols=97 Identities=7% Similarity=-0.103 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
+......+...+...|++++|.++|+.. ...| +..-|..|...|...|++.+|+..|.++..++|++|..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455566777788999999999999987 3445 6677888888899999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhC
Q 047471 517 ASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~ 535 (579)
...|+.+.|++.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=2.2e-06 Score=69.60 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
.....+...+...|++++|.+.++.+ ...| ++..+..+...+...|++++|..+++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33445555566666666666666664 2223 445555666666666677777777777777777766777777777777
Q ss_pred CCChHHHHHHHHHHHhC
Q 047471 519 DGMWGDVAGARKMLKDS 535 (579)
Q Consensus 519 ~g~~~~A~~~~~~~~~~ 535 (579)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777666554
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=2.8e-05 Score=81.47 Aligned_cols=218 Identities=10% Similarity=0.081 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHc-cCC---CCcchHhHHHHHHHhcCChHHHHHHHHccCCC--ChhhHHHHH
Q 047471 303 DFTFASILAACAGLASVQHGKQIHAHLIRM-RLN---QDVGVGNALVNMYAKCGLISCSYKLFNEMLHR--NVVSWNTII 376 (579)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~ 376 (579)
...|...|......++.+.|.++.+++... ++. --..+|.++++.-..-|.-+...++|+++.+- ....|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345555566666677777777777666543 111 12345666666666667677777777777542 234677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHHHhcC
Q 047471 377 AAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP--DIEHFTCLIDLLGRAG 454 (579)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 454 (579)
..|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-++|..++.++.+. ++. ........+..-.+.|
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcC
Confidence 8888888888888888888875 4456677888888888888888888888888763 332 3444555666677888
Q ss_pred ChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCccHHH-HHHHHHcCCChH
Q 047471 455 KLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ--PTTTSPYVL-LSNLYASDGMWG 523 (579)
Q Consensus 455 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~-l~~~~~~~g~~~ 523 (579)
+.+++..+|+.. ...| ....|+.++..-.++|+.+.++.+|++++.+. |.....++. ++.---+.|+-+
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 888888888876 2223 56788888888888888888888888888866 444433333 333333345544
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=1.9e-05 Score=81.05 Aligned_cols=139 Identities=11% Similarity=0.025 Sum_probs=101.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHH
Q 047471 368 NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCL 446 (579)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 446 (579)
++..+..|.....+.|.+++|..+++...+ +.|+ ......+...+.+.+++++|+...++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 466777777788888888888888888887 4665 45566667778888888888888888876 444556666777
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 447 IDLLGRAGKLLEAEEYTKKFP-LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
..++...|++++|.++|+++. ..| ++..+..+...+...|+.++|...|+++++...+....|.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 778888888888888888863 334 3567777777788888888888888888887655444433
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.6e-07 Score=53.28 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=14.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 435 GISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 435 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 128
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=1.4e-05 Score=72.04 Aligned_cols=182 Identities=11% Similarity=-0.009 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCc---chHhHHHHHHHhcCChHHHHHHHHccCC--CCh-h---
Q 047471 300 RPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDV---GVGNALVNMYAKCGLISCSYKLFNEMLH--RNV-V--- 370 (579)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~--- 370 (579)
......+..+...+...|+++.|...++++.... +.++ ..+..+..+|...|++++|...++++.+ |+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677788888999999999999999998764 2222 4667788899999999999999999843 322 2
Q ss_pred hHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChh
Q 047471 371 SWNTIIAAHANH--------RLGGSALKLFEQMKATGIKPDS-VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIE 441 (579)
Q Consensus 371 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 441 (579)
.+..+..++... |++++|.+.++++.+. .|+. .....+... .. .. ... . .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~-~--------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRL-A--------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHH-H--------H
Confidence 355555666554 7889999999999884 4443 222221111 00 00 000 0 0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
....+...+.+.|++.+|...+++. ...| .+..+..+..++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1124566788888888888888776 2222 245777888888888888888888887776555
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=6.9e-05 Score=77.06 Aligned_cols=130 Identities=8% Similarity=0.031 Sum_probs=103.5
Q ss_pred cCCCCcchHhHHHHHHHhcCChHHHHHHHHccC--CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 047471 333 RLNQDVGVGNALVNMYAKCGLISCSYKLFNEML--HRNV-VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFI 408 (579)
Q Consensus 333 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~ 408 (579)
..+.+...+..|.....+.|.+++|+.+++... .|+. ..+..+...+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 346667888888888889999999999999884 3543 45666778888999999999999988884 454 55666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
.+..++...|++++|..+|+++.. ..+-+...+..+..++.+.|+.++|...|++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 677778889999999999999886 33445778888888888999999999988886
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.46 E-value=0.0026 Score=64.52 Aligned_cols=500 Identities=12% Similarity=0.049 Sum_probs=267.2
Q ss_pred hhcchhHHHHHHHHHHHhcCCCCchhHHHHHHH--HHccCChhHHHHHhcccCC---CCcccHHHHHHHHHhcCChHHHH
Q 047471 14 KTKALQQGISLHAAVLKMGIQPDVIVSNHVLNL--YAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQAGEHLLAL 88 (579)
Q Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 88 (579)
..+++..|..-...+.+.. |+.. |..++.+ +.|.|+.++|..+++.... .|..+...+-.+|.+.|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 4567888988888888765 4433 4444454 4678999999999988754 47778899999999999999999
Q ss_pred HHHHHcccC-CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC-C---------hhHHHHH
Q 047471 89 EFFSQMHLL-PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVG-Y---------SSDALLV 157 (579)
Q Consensus 89 ~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~ 157 (579)
.+|++.... |+..-...+..++.+.+++.+-.++--++-+ .++..+..+=++++.+...- . ..-|.+.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999999888 9988888889999999888876666555554 23334444334444443321 1 1223344
Q ss_pred hccCCCCC--cch---HHHHHHHHHhCCCcchHHHHHH-HHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhC
Q 047471 158 YGEAFEPN--LVS---FNALIAGFVENQQPEKGFEVFK-LMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCK 231 (579)
Q Consensus 158 ~~~~~~~~--~~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 231 (579)
++.+.+.+ ..+ .......+-..|.+++|++++. ...+.-...+...-+.-+..+...+++....++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44443322 111 1122334556788999999884 33333233333344455666777777777777777777766
Q ss_pred CCCChhHHhHHHHH----------------HHhcCChhHHHHHHHhcCCC-CcchHHHHHHHHH---hCCChHHHHHHHH
Q 047471 232 LESNPFVGNTIMAL----------------YSKFNLIGEAEKAFRLIEEK-DLISWNTFIAACS---HCADYEKGLSVFK 291 (579)
Q Consensus 232 ~~~~~~~~~~l~~~----------------~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~~ 291 (579)
... |...++. +...+..+...+........ ....|-+-+.+.. .-|+.+++.-.|-
T Consensus 257 ~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 NDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred Ccc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 442 2222221 11122233333333222221 2233333333333 4477777655543
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcc-------hHhHHHHHHHhcCC-----hHHHHH
Q 047471 292 EMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVG-------VGNALVNMYAKCGL-----ISCSYK 359 (579)
Q Consensus 292 ~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~-----~~~A~~ 359 (579)
+-. |-+|--. .=+..|...=..++-..++....... ++.. .+.+.+..-.-.|. -+....
T Consensus 333 ~kf---g~kpcc~---~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 333 KKF---GDKPCCA---IDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHh---CCCcHhH---hhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 322 3333211 00111111111111122222221110 0000 01111111111121 111111
Q ss_pred HHHcc----CC---------CCh---------hhHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047471 360 LFNEM----LH---------RNV---------VSWNTIIAAHANHRLGGS---ALKLFEQMKATGIKPDSVTFIGLLTAC 414 (579)
Q Consensus 360 ~~~~~----~~---------~~~---------~~~~~l~~~~~~~~~~~~---a~~~~~~m~~~~~~p~~~~~~~ll~~~ 414 (579)
++++. .+ |+. .+-+.|++.+.+.++... |+-+++..... -+-|..+-..+|+.|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHH
Confidence 11111 01 111 134667778888887763 44444444442 123556666778888
Q ss_pred hccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC-hhhHHHHHHHHHhcCCHHHH
Q 047471 415 NHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP--LGQD-PIVLGTLLSACRLRRDVVIG 491 (579)
Q Consensus 415 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~A 491 (579)
+-.|-+..|.+.|+.+--+ .+..|..-|. +.+.+...|++..+...++... ...+ ..+-.. +..-.+.|.+.+.
T Consensus 484 ~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~ey-I~~AYr~g~ySkI 560 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEY-IALAYRRGAYSKI 560 (932)
T ss_pred HHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHH-HHHHHHcCchhhh
Confidence 8888888998888888655 5555544332 3445566778877777666541 0011 122222 3333466777766
Q ss_pred HHHHHHHHhcCCCC----CccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 492 ERLAKQLFHLQPTT----TSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 492 ~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.+...-=-+++-.. ..+-......+...++.++-...+..|.
T Consensus 561 ~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 561 PEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 66544333333221 2333456677778888888888888775
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=1.7e-05 Score=82.19 Aligned_cols=215 Identities=11% Similarity=0.092 Sum_probs=148.6
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHH-HHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHH
Q 047471 266 DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTF-ASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNAL 344 (579)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 344 (579)
+...|..|+..+...+++++|.++.+...+. .|+...+ ..+...+.+.++...+..+ . +
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 4567889999999999999999999977655 4554332 2222245555665554444 2 2
Q ss_pred HHHHHhcCChHHHHHHHHccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047471 345 VNMYAKCGLISCSYKLFNEMLH--RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKE 422 (579)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 422 (579)
+.......++..+..+...+.. .+...+..+..+|-+.|+.+++...|+++.+.. +-|....+.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222223333223333333321 233467788999999999999999999999965 33688899999999988 9999
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---------------------hhhHHHHHH
Q 047471 423 GEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD---------------------PIVLGTLLS 480 (579)
Q Consensus 423 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------------------~~~~~~l~~ 480 (579)
|.+++.++... |...+++.++.+++.++ ...|+ ..++..+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99999988774 44445666666666554 22232 223334445
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
.|...++++++..+++.+++.+|.|..+...++.+|..
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 56677889999999999999999999999999999983
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=5.2e-05 Score=78.72 Aligned_cols=216 Identities=9% Similarity=-0.000 Sum_probs=119.1
Q ss_pred CChhHHhHHHHHHHhcCChhHHHHHHHhcCC--CC-cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH-------
Q 047471 234 SNPFVGNTIMALYSKFNLIGEAEKAFRLIEE--KD-LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD------- 303 (579)
Q Consensus 234 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~------- 303 (579)
.+...+..|+..|...+++++|..+.+...+ |+ ...|-.+...+.+.++..++..+ .+... ...+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHHH
Confidence 4567788999999999999999999987665 33 33454555577777777776666 44332 11221
Q ss_pred ------------HHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhh
Q 047471 304 ------------FTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVS 371 (579)
Q Consensus 304 ------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 371 (579)
..+..+..+|.+.|+.+++..+++++.+.. +.++.+.|.+...|... ++++|..++.+.+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV------ 176 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI------ 176 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH------
Confidence 222333333444444444444444444444 33444444444444444 4444444443321
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG 451 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (579)
..|...+++..+.++|.++... ...+++.-..+.+.+...-+..--..++..+...|.
T Consensus 177 -----~~~i~~kq~~~~~e~W~k~~~~-----------------~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~ 234 (906)
T PRK14720 177 -----YRFIKKKQYVGIEEIWSKLVHY-----------------NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYK 234 (906)
T ss_pred -----HHHHhhhcchHHHHHHHHHHhc-----------------CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 1133333444444444444442 222334444444444443333344455666777888
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 047471 452 RAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACR 483 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 483 (579)
..++++++..+++.+ ...| |.....-++..|.
T Consensus 235 ~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 235 ALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 889999999999997 3333 5555666666654
No 133
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=7.4e-05 Score=69.48 Aligned_cols=186 Identities=10% Similarity=0.035 Sum_probs=136.2
Q ss_pred HHhcCChHHHHHHHHccCCCCh---hhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HH
Q 047471 348 YAKCGLISCSYKLFNEMLHRNV---VSWNTIIAAHANHR-LGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGL--VK 421 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~ 421 (579)
+...++.++|+.+..++++.++ .+|+....++...| ++++++..++++.+... .+..+|......+.+.|. .+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 3445678888888888754333 34555555666666 67999999999998532 244556655444555555 36
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---CC----HHHHH
Q 047471 422 EGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLR---RD----VVIGE 492 (579)
Q Consensus 422 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~----~~~A~ 492 (579)
++..+++++.+ ..+-+..+|+....++...|+++++++.++++ ...| +...|+.....+... |. .++..
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 78889988887 44567888998899999999999999999997 3334 667787777665544 22 25788
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHcC----CChHHHHHHHHHHHhCC
Q 047471 493 RLAKQLFHLQPTTTSPYVLLSNLYASD----GMWGDVAGARKMLKDSG 536 (579)
Q Consensus 493 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 536 (579)
.+..++++.+|+|.++|..+..++... ++..+|.+......+.+
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 889999999999999999999999883 45567888887765543
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=7.3e-05 Score=70.22 Aligned_cols=139 Identities=17% Similarity=0.004 Sum_probs=99.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhc
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLLGRA 453 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 453 (579)
...+...|++++|+..++.+... .| |..........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence 33455667888888888887774 34 4555555566688888888888888888753 444 45556677888888
Q ss_pred CChHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 454 GKLLEAEEYTKKF--PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 454 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
|++.+|..++++. ..+.|+..|..|..+|...|+..++... .++.|+..|+|++|...+..
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHH
Confidence 8888888888775 3344778888888888888887777653 45577777888888887777
Q ss_pred HHhCC
Q 047471 532 LKDSG 536 (579)
Q Consensus 532 ~~~~~ 536 (579)
..+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76654
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0001 Score=63.54 Aligned_cols=241 Identities=11% Similarity=-0.016 Sum_probs=153.1
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCCh
Q 047471 275 AACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLI 354 (579)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 354 (579)
+-+.-.|.+..++..-...... +-+...-..+-++|...|.+.... .++.... .|.......+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 3444557777777666555432 233444444555666666543322 1122111 22223333333333333333
Q ss_pred HHHHH-HHHccCCCC---hhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047471 355 SCSYK-LFNEMLHRN---VVSW-NTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNS 429 (579)
Q Consensus 355 ~~A~~-~~~~~~~~~---~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 429 (579)
++-.. +.+.+..++ ..++ ..-...|+..|++++|++..+... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 333332221 2122 223445899999999999887622 222233334456788899999999999
Q ss_pred hHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 430 MEKTYGISPDIEHFTCLIDLLGR----AGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
|.+- .+..+.+.|..++.+ .++..+|.-+|+++. ..|.+.+.+....++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9863 455677777777654 457899999999994 568888888888899999999999999999999999
Q ss_pred CCCccHHHHHHHHHcCCChHHHH-HHHHHH
Q 047471 504 TTTSPYVLLSNLYASDGMWGDVA-GARKML 532 (579)
Q Consensus 504 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 532 (579)
++|.+...++-+-.-.|.-.++. +.+..+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 99999999988888888876653 344444
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=9.4e-06 Score=76.86 Aligned_cols=122 Identities=14% Similarity=0.102 Sum_probs=97.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRL 484 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 484 (579)
...++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+. ...| +...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566666777888888888888764 244 3445777777788888888887775 3334 55666666777889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 485 RRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 485 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.++++.|..+.+++.+..|++-..|..|+.+|...|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999886
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00021 Score=61.16 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=114.8
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCCCChhhHHH---HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLHRNVVSWNT---IIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG 418 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 418 (579)
..++-+...+|+.+-|...++.+...-+.++.. -...+-..|.+++|+++++...+.+ +.|..++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 334444555566666666666652211111111 1122455688899999999888865 446677766666666777
Q ss_pred CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---CCHHHHHH
Q 047471 419 LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLR---RDVVIGER 493 (579)
Q Consensus 419 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~A~~ 493 (579)
+.-+|++-+.+..+ .+..|...|..+.+.|...|++++|.--++++ -..| ++..+..+...+.-. .+...|.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888888887 56778889999999999999999999888887 3445 666677777765443 36788899
Q ss_pred HHHHHHhcCCCCCccHHH
Q 047471 494 LAKQLFHLQPTTTSPYVL 511 (579)
Q Consensus 494 ~~~~~~~~~p~~~~~~~~ 511 (579)
+|++++++.|.+...+.-
T Consensus 213 yy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 213 YYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHhChHhHHHHHH
Confidence 999999999966554443
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00011 Score=62.92 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGL-LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
.|..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|.+++|.++++.+.+. .+.|..++-.-+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3455666677889999999999999886 3 543333222 22256789999999999999984 46677777766767
Q ss_pred HHhcCChHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCC---hHH
Q 047471 450 LGRAGKLLEAEEYTKKF--PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGM---WGD 524 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~ 524 (579)
.-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.+++++=.+|-++..+..+++++.-.|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888876665 3567999999999999999999999999999999999999999999998888764 556
Q ss_pred HHHHHHHHHhCCC
Q 047471 525 VAGARKMLKDSGL 537 (579)
Q Consensus 525 A~~~~~~~~~~~~ 537 (579)
|++++.+..+-..
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 7888888766543
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.31 E-value=2.3e-05 Score=63.60 Aligned_cols=114 Identities=9% Similarity=-0.035 Sum_probs=88.0
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 047471 391 LFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL 468 (579)
Q Consensus 391 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 468 (579)
.++++.. ..|+ ......+...+...|++++|...++.+... .+.+...+..+...+...|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 3443 344556667788889999999999888773 3557778888888999999999999988886 33
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 469 GQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 469 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
.| ++..+..+...+...|++++|...++++++.+|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 56777778888889999999999999999999987653
No 140
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.29 E-value=0.0034 Score=58.66 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=53.6
Q ss_pred ChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 471 DPIVLGTLLSA--CRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 471 ~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
+...-+.|..+ +..+|++.++.-.-..+.+..| ++.+|..++-++....++++|..++..++
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34566777766 5679999999999999999999 69999999999999999999999998753
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=4.6e-05 Score=62.45 Aligned_cols=114 Identities=19% Similarity=0.125 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh----hhHHHHHHHHHhcCCHHH
Q 047471 417 AGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKFP-LGQDP----IVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~ 490 (579)
.++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.+. ..|++ .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555554311110 01122223344555555555555555541 11222 122334444555566666
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 491 GERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
|+..++.. ...+-.+..+..++.+|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555442 22223344555666666666666666666654
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=6.2e-05 Score=71.44 Aligned_cols=126 Identities=10% Similarity=-0.037 Sum_probs=100.7
Q ss_pred HhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047471 341 GNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLV 420 (579)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 420 (579)
...|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+. .+-+...+..-...|.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 3455666667788999999999997777777777888888888889999999988874 233566666666678899999
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 047471 421 KEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLG 469 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (579)
+.|+.+.+++.+ -.+-+..+|..|..+|...|+++.|+..++.++..
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999986 34455678999999999999999999999988633
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00017 Score=59.04 Aligned_cols=126 Identities=14% Similarity=0.073 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCCh--hHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPD--SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDI--EHFTCLI 447 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~ 447 (579)
|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+.+... ...|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 44445554 47888888888888888532211 223334556688889999999999999875 322222 2344567
Q ss_pred HHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047471 448 DLLGRAGKLLEAEEYTKKFPLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLF 499 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 499 (579)
..+...|++++|+..++.....+ .+..+......+...|+.++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88889999999999998864332 44566677777889999999999998763
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.13 E-value=3.4e-05 Score=61.00 Aligned_cols=92 Identities=12% Similarity=-0.019 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CccHHHHHHH
Q 047471 444 TCLIDLLGRAGKLLEAEEYTKKF-PLGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT---TSPYVLLSNL 515 (579)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 515 (579)
..++..+.+.|++++|.+.++.+ ...|+ ......+..++...|+++.|...++.+....|++ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444445555555555555444 11221 1233344455555555555555555555555543 2345555555
Q ss_pred HHcCCChHHHHHHHHHHHhC
Q 047471 516 YASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~ 535 (579)
+...|++++|...++.+.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55556666666555555544
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.5e-06 Score=49.09 Aligned_cols=35 Identities=40% Similarity=0.738 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCc
Q 047471 167 VSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDR 201 (579)
Q Consensus 167 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 201 (579)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.09 E-value=6.6e-06 Score=57.51 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=58.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCC-ChHHHHHHHHHHHhC
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDG-MWGDVAGARKMLKDS 535 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 535 (579)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888889999999999999999999999999999999999999999 799999999987653
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=3.4e-05 Score=58.04 Aligned_cols=93 Identities=19% Similarity=0.126 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCC
Q 047471 443 FTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDG 520 (579)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 520 (579)
+..++..+...|++++|.+.++++ ...| +...+..+...+...|+++.|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888775 3334 34566677777788889999999999999988888888888999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 047471 521 MWGDVAGARKMLKDS 535 (579)
Q Consensus 521 ~~~~A~~~~~~~~~~ 535 (579)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888877643
No 148
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=5.9e-06 Score=48.15 Aligned_cols=33 Identities=27% Similarity=0.580 Sum_probs=30.4
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHHCCCCC
Q 047471 167 VSFNALIAGFVENQQPEKGFEVFKLMLRQGLLP 199 (579)
Q Consensus 167 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 199 (579)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999887
No 149
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.06 E-value=0.013 Score=56.31 Aligned_cols=205 Identities=13% Similarity=0.061 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcC---ChHHHHHHHHccC----CCChhhHHHHHHHHHhcCChHHHHHH
Q 047471 319 VQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCG---LISCSYKLFNEML----HRNVVSWNTIIAAHANHRLGGSALKL 391 (579)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (579)
.+++..+++.....-...+..+|..+...-...- +.+..-..+++.. ..-..+|-.+++.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3445555555444332333444443333221111 2444445555542 22334677788888888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---
Q 047471 392 FEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP--- 467 (579)
Q Consensus 392 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 467 (579)
|.++.+.+..+ .....+.++..++. ++..-|.++|+.-.+++| .++.--...++-+...++-..+..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988777 67777888877665 788999999999888654 344445677888889999999999999973
Q ss_pred CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----ccHHHHHHHHHcCCChHHHH
Q 047471 468 LGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT----SPYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 468 ~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~ 526 (579)
..| ....|..++..-..-||...+.++-++.....|.+. ..-..+..-|.=.+.+..-.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 233 337899999999999999999999988888776321 23344555555555544333
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=8.1e-06 Score=47.95 Aligned_cols=33 Identities=36% Similarity=0.586 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPD 403 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 403 (579)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=8.6e-06 Score=56.07 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
+...+...|++++|+..|+++++..|+++..+..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567888999999999999999999999999999999999999999999999887654
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6.5e-05 Score=66.54 Aligned_cols=112 Identities=23% Similarity=0.227 Sum_probs=92.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCccH
Q 047471 435 GISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLR---RDVVIGERLAKQLFHLQPTTTSPY 509 (579)
Q Consensus 435 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~ 509 (579)
..+-|...|..|...|...|+...|..-|.+. .. .+++..+..+..++..+ ....++..+++++++++|.|....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34667888999999999999999999988886 33 34677788888876543 346889999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEE
Q 047471 510 VLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMI 546 (579)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 546 (579)
..|+..++.+|++.+|...|+.|.+.....+|..+.|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999999877766665443
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.04 E-value=0.00058 Score=55.55 Aligned_cols=134 Identities=11% Similarity=0.059 Sum_probs=108.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---ChhhH
Q 047471 400 IKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ---DPIVL 475 (579)
Q Consensus 400 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 475 (579)
..|+...-..|..+....|+..+|...|++...- -+..|....-.+.++....+++..|...++++ +.+| .+...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677666677888899999999999999998873 45567788888889999999999999988886 3333 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 476 GTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 476 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
..+...+...|.+..|+..|+.++.-.|. +......+..+.++|+..+|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 67788899999999999999999998887 677788888999999888887666555443
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.011 Score=54.91 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=80.9
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGL 419 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 419 (579)
+.+..+.-+...|+...|.++-.+..-|+-..|...+.+++..++|++-..+... +-++..|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566667788888888888888778888888888888888888877765432 1234678888888888888
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 420 VKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 420 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
..+|..+..++. +..-+..|.++|++.+|.+.-.+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888777631 134567788888888887765553
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=4.9e-06 Score=60.80 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=40.5
Q ss_pred CChHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHH
Q 047471 454 GKLLEAEEYTKKF-PLGQ---DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGAR 529 (579)
Q Consensus 454 g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (579)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555544 1112 233344455555556666666666655 4555555555555566666666666666666
Q ss_pred HH
Q 047471 530 KM 531 (579)
Q Consensus 530 ~~ 531 (579)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.02 E-value=0.00011 Score=58.08 Aligned_cols=104 Identities=15% Similarity=0.053 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhhHHHHH
Q 047471 406 TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD----PIVLGTLL 479 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 479 (579)
++..+...+.+.|++++|.+.+..+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ +..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566677777777777777776421111 1334556777777778888888777775 22333 34566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccH
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTSPY 509 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 509 (579)
.++...|+.++|...++++++..|+++...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 777888888888888888888888876543
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=1.2e-05 Score=46.85 Aligned_cols=33 Identities=36% Similarity=0.631 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 047471 370 VSWNTIIAAHANHRLGGSALKLFEQMKATGIKP 402 (579)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 402 (579)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.98 E-value=5.8e-05 Score=66.38 Aligned_cols=104 Identities=11% Similarity=-0.042 Sum_probs=58.9
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIG 491 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A 491 (579)
+.+.+++++|+..|.++++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3455666666666666664 23334444555556666666666666655553 33342 34566666666666666666
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHcC
Q 047471 492 ERLAKQLFHLQPTTTSPYVLLSNLYASD 519 (579)
Q Consensus 492 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 519 (579)
++.|+++++++|+|......|-.+-.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 6666666666666665555444443333
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.86 E-value=0.00014 Score=69.51 Aligned_cols=107 Identities=10% Similarity=-0.044 Sum_probs=90.0
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDV 488 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 488 (579)
...+...|++++|+..|+++++. .+.+...|..+..+|...|++++|+..++++ ...| +...+..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44567789999999999999973 4556778888999999999999999999987 4455 567788888899999999
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHHcC
Q 047471 489 VIGERLAKQLFHLQPTTTSPYVLLSNLYASD 519 (579)
Q Consensus 489 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 519 (579)
++|+..|+++++++|+++.....+..+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988877776664443
No 160
>PRK15331 chaperone protein SicA; Provisional
Probab=97.85 E-value=0.00046 Score=55.70 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=77.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCCh
Q 047471 445 CLIDLLGRAGKLLEAEEYTKKFP-LG-QDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMW 522 (579)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 522 (579)
....-+...|++++|..+|+-+- .. -++.-|..|...+...+++++|...|..+.-++++||..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34455668999999999998862 23 36677888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 047471 523 GDVAGARKMLKD 534 (579)
Q Consensus 523 ~~A~~~~~~~~~ 534 (579)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.85 E-value=5.4e-05 Score=53.53 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 479 LSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
...+...+++++|.++++++++.+|+++..+...+.++...|++++|.+.++...+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999999999999999999999999986654
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.83 E-value=0.00031 Score=67.10 Aligned_cols=105 Identities=12% Similarity=-0.017 Sum_probs=84.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG 454 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (579)
....+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++++. .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456778899999999999999853 235778888888999999999999999999873 3456778889999999999
Q ss_pred ChHHHHHHHHhC-CCCCChhhHHHHHHHH
Q 047471 455 KLLEAEEYTKKF-PLGQDPIVLGTLLSAC 482 (579)
Q Consensus 455 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 482 (579)
++++|...|++. ...|+...+...+..|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999986 5667655555444433
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00067 Score=57.51 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 047471 370 VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD--SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLI 447 (579)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 447 (579)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3566677778888888888888888876433332 356777777888889999999988888863 233556666777
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 448 DLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
.++...|+...+..-++.. ...+++|.++++++++.+|++ |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7777777766655433221 123678889999999999887 5555555544443
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.82 E-value=2.2e-05 Score=54.66 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=46.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999987654
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.0002 Score=60.74 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
.+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555666666666666554 11221 245666677777788888888888888888888777777888888
Q ss_pred HcCCC--------------hHHHHHHHHHHHhC
Q 047471 517 ASDGM--------------WGDVAGARKMLKDS 535 (579)
Q Consensus 517 ~~~g~--------------~~~A~~~~~~~~~~ 535 (579)
...|+ +++|.+.+++..+.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 77766 45666666666543
No 166
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.81 E-value=0.027 Score=51.86 Aligned_cols=278 Identities=16% Similarity=0.161 Sum_probs=178.2
Q ss_pred CChhHHHHHHHhcC---CCCcchHHHHHH--HHHhCCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHhCcCChHHH
Q 047471 250 NLIGEAEKAFRLIE---EKDLISWNTFIA--ACSHCADYEKGLSVFKEMSNDHGVRPDD--FTFASILAACAGLASVQHG 322 (579)
Q Consensus 250 ~~~~~a~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a 322 (579)
|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |.. .-...|.-...+.|..+.|
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHH
Confidence 44455554443332 234333333433 344568888888888888743 322 2233333344577888888
Q ss_pred HHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc-----CCCChhh--HHHHHHHH---HhcCChHHHHHHH
Q 047471 323 KQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM-----LHRNVVS--WNTIIAAH---ANHRLGGSALKLF 392 (579)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~ 392 (579)
.++-+.....- +.-.-.....+...+..|+++.|+++++.- +++++.- -..|+.+- .-.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88777766543 334456677888888899999999888865 3344432 22233221 1123456666666
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----C
Q 047471 393 EQMKATGIKPDSV-TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF----P 467 (579)
Q Consensus 393 ~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 467 (579)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+. +..-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHHh
Confidence 66555 567743 3334456789999999999999999864 555554432 233455543 33333332 2
Q ss_pred CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC-CChHHHHHHHHHHHhCCCCCCCCce
Q 047471 468 LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD-GMWGDVAGARKMLKDSGLKKEPSYS 544 (579)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~ 544 (579)
.+| +..+......+-...|++..|..-.+.+....|. .+.|..|+++-... |+-.+++..+-...+. +.+|.++
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~ 399 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWT 399 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCccc
Confidence 345 5566777788888999999999999999999998 67888999987776 9999999998877654 3456543
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.016 Score=53.97 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=37.4
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHH
Q 047471 243 MALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHG 322 (579)
Q Consensus 243 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 322 (579)
+.-+...|+...|.++-.+..-|+..-|-..+.+++..+++++-..+... . -++..|-.++.+|.+.|+..+|
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----k--KsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----K--KSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----C--CCCCChHHHHHHHHHCCCHHHH
Confidence 33444445555555555555555555555555555555555544433221 0 1123444445555555555555
Q ss_pred HHHHHH
Q 047471 323 KQIHAH 328 (579)
Q Consensus 323 ~~~~~~ 328 (579)
..+...
T Consensus 257 ~~yI~k 262 (319)
T PF04840_consen 257 SKYIPK 262 (319)
T ss_pred HHHHHh
Confidence 444443
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=6.3e-05 Score=51.72 Aligned_cols=61 Identities=15% Similarity=0.021 Sum_probs=49.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 446 LIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
+...+...|++++|.+.|+++ ...| ++..+..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999998887 4445 567788888888999999999999999999999874
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00034 Score=52.39 Aligned_cols=91 Identities=16% Similarity=0.059 Sum_probs=46.2
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDV 488 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 488 (579)
...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444455555555555555432 1222244444555555555555555555543 2122 234455555556666666
Q ss_pred HHHHHHHHHHHhcCC
Q 047471 489 VIGERLAKQLFHLQP 503 (579)
Q Consensus 489 ~~A~~~~~~~~~~~p 503 (579)
+.|...++++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666665554
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=8.5e-05 Score=65.40 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=78.3
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHH
Q 047471 448 DLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDV 525 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 525 (579)
.-+.+.+++++|+..|.+. .+.| |++.|..-..+|.+.|.++.|++-.+.++.++|.....|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4466889999999999886 5666 6677777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 047471 526 AGARKMLKDS 535 (579)
Q Consensus 526 ~~~~~~~~~~ 535 (579)
++.|++..+-
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9998887654
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.76 E-value=0.0014 Score=65.55 Aligned_cols=66 Identities=20% Similarity=0.099 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
..+..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34444433333445555555544443 3334444444444444445555555555555555555443
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.75 E-value=0.00024 Score=60.07 Aligned_cols=93 Identities=10% Similarity=-0.105 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
...+..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566677777788888888877775 22232 2467778888888999999999999999999988888888888
Q ss_pred HHH-------cCCChHHHHHHHHHH
Q 047471 515 LYA-------SDGMWGDVAGARKML 532 (579)
Q Consensus 515 ~~~-------~~g~~~~A~~~~~~~ 532 (579)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666655543
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=0.00011 Score=53.67 Aligned_cols=79 Identities=19% Similarity=0.160 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 383 RLGGSALKLFEQMKATGIK-PDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 383 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+. + +.+......+..++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555543211 1222333344455555555555555544 111 0 0112223333445555555555555
Q ss_pred HHH
Q 047471 462 YTK 464 (579)
Q Consensus 462 ~~~ 464 (579)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.0011 Score=60.90 Aligned_cols=133 Identities=11% Similarity=0.093 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 370 VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA-CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888999999999998642 2234444444443 33357777899999999985 4567778888999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 449 LLGRAGKLLEAEEYTKKF-PLGQDP----IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+..|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999996 222333 488999999999999999999999999988774
No 175
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.4e-05 Score=42.83 Aligned_cols=31 Identities=39% Similarity=0.699 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhCCCcchHHHHHHHHHHCCC
Q 047471 167 VSFNALIAGFVENQQPEKGFEVFKLMLRQGL 197 (579)
Q Consensus 167 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 197 (579)
.+||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688899999999999999999999988764
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=7.8e-05 Score=42.17 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGI 400 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 400 (579)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.54 E-value=4.6e-05 Score=43.85 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHcCCChHHHHH
Q 047471 495 AKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAG 527 (579)
Q Consensus 495 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 527 (579)
++++++++|+|+..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.53 E-value=0.0049 Score=52.03 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKP--DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+. .+.....+..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 45555666666777777777777776542222 1235666666677777777777777777652 2223344444444
Q ss_pred HHH
Q 047471 449 LLG 451 (579)
Q Consensus 449 ~~~ 451 (579)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.52 E-value=0.0014 Score=62.65 Aligned_cols=116 Identities=9% Similarity=0.133 Sum_probs=87.3
Q ss_pred ChhHHhHHHHHHHhcCChhHHHHHHHhcCCC------CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHH
Q 047471 235 NPFVGNTIMALYSKFNLIGEAEKAFRLIEEK------DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFAS 308 (579)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 308 (579)
+......+++.+....+++.+..++.+.... -..+..++++.|.+.|..+.++.+++.=... |+-||..+++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y-GiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY-GIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc-ccCCChhhHHH
Confidence 3444455555666666667777766665532 2345668899999999999999999888777 99999999999
Q ss_pred HHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhc
Q 047471 309 ILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKC 351 (579)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 351 (579)
+|..+.+.|++..|.++..+|...+...++.++..-+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888887777777666555555554
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.49 E-value=0.011 Score=52.88 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTS---PYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
...-|.+.|.+..|..-++.+++..|+++. ....+..+|...|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445588899999999999999998887654 56677899999999999999887664
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.0052 Score=61.47 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHh--cc---CCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHHh
Q 047471 400 IKPDSVTFIGLLTACN--HA---GLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLLGRA--------GKLLEAEEYTKK 465 (579)
Q Consensus 400 ~~p~~~~~~~ll~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 465 (579)
.+.+...|...+++.. .. ++...|..+|+++++. .|+ ...+..+..++... ++...+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4456667777666632 22 2366777777777753 444 33344333333221 123344444444
Q ss_pred C---C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 466 F---P-LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 466 ~---~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
. + ...++..+..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++.....+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2 1 233556677776666778999999999999999999 478999999999999999999999999876654
No 182
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0024 Score=58.86 Aligned_cols=256 Identities=11% Similarity=0.018 Sum_probs=116.2
Q ss_pred HHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHhCcCC
Q 047471 243 MALYSKFNLIGEAEKAFRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD-FTFASILAACAGLAS 318 (579)
Q Consensus 243 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~ 318 (579)
...+.+..++.+|.+.+....+ | +..-|..-...+...|++++|.--.+.-.+ ++|.. ....-.-.++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhHH
Confidence 3455566666777776666554 2 344455556666666777776655544432 23322 233344445555556
Q ss_pred hHHHHHHHHHHHHc----------c------CCCCcchHhHH-HHHHHhcCChHHHHHHHHccCCCChh-hHHHHHHH--
Q 047471 319 VQHGKQIHAHLIRM----------R------LNQDVGVGNAL-VNMYAKCGLISCSYKLFNEMLHRNVV-SWNTIIAA-- 378 (579)
Q Consensus 319 ~~~a~~~~~~~~~~----------~------~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~-- 378 (579)
..+|.+.++.-... . -+|....+..+ ..++.-.|++++|..+-..+.+.|.. .+...+.+
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLC 212 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccc
Confidence 66666555421100 0 01111222211 23444455555555555444433322 22222322
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HH----------HHHhccCCHHHHHHHHHHhHHH--hCCCCChhHH
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSVTFIG---LL----------TACNHAGLVKEGEAYFNSMEKT--YGISPDIEHF 443 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---ll----------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 443 (579)
+--.++.+.+...|++.+.. .|+...-.. .. .-..+.|++..|.+.|.+.+.. ....|+...|
T Consensus 213 ~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY 290 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLY 290 (486)
T ss_pred cccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHH
Confidence 22345556666666655552 333222111 11 1123455666666666655521 0111223334
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 444 TCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLL---SACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
.....+..+.|+..+|+.-.++.. .-|+.....++ .++...+++++|++-++++.+...+
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444445555666666665555542 22222222221 2233345566666666666655543
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.00096 Score=60.15 Aligned_cols=99 Identities=14% Similarity=0.049 Sum_probs=51.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC----ChhhHHHHHH
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ----DPIVLGTLLS 480 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~ 480 (579)
|...+....+.|++++|...|+.+++.+.-.+ ....+..+..+|...|++++|...|+++ ...| .+..+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333455666666666666666421111 0234455566666666666666665554 1112 1233333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
.+...|+.++|...++++++..|++
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4555566666666666666666654
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.46 E-value=0.0061 Score=56.40 Aligned_cols=96 Identities=8% Similarity=0.050 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCCHHHHHHHHHHhHHHh-CCCCC--hhH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKP-----DSV-TFIGLLTACNHAGLVKEGEAYFNSMEKTY-GISPD--IEH 442 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~ 442 (579)
+..+...+.+.|++++|.++|++....-... +.. .|...+-++...||+..|...+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3445555666677777777776665532211 111 12222223444566666666666665321 12122 233
Q ss_pred HHHHHHHHHh--cCChHHHHHHHHhCC
Q 047471 443 FTCLIDLLGR--AGKLLEAEEYTKKFP 467 (579)
Q Consensus 443 ~~~l~~~~~~--~g~~~~A~~~~~~~~ 467 (579)
...|+.++-. ...+++|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4445555543 234555555555553
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.0064 Score=56.24 Aligned_cols=109 Identities=14% Similarity=0.214 Sum_probs=55.0
Q ss_pred HHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhcc
Q 047471 345 VNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANH-RLGGSALKLFEQMKAT----GIKPD--SVTFIGLLTACNHA 417 (579)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~ 417 (579)
+..|...|++..|-+.+.+ +...|... |++++|++.|++..+. | .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 3455666666665544443 45556565 6777777777766542 2 111 23445555666777
Q ss_pred CCHHHHHHHHHHhHHHhCCCC-----Chh-HHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 418 GLVKEGEAYFNSMEKTYGISP-----DIE-HFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 418 ~~~~~a~~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
|++++|.++|+++... .... +.. .+-..+-++...|+...|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777776653 1111 111 1222233444556666666666654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.43 E-value=0.00014 Score=50.49 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=28.3
Q ss_pred ccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 416 HAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
..|++++|.+.|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666666666553 2335555555666666666666666666665
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.40 E-value=0.00051 Score=65.00 Aligned_cols=65 Identities=11% Similarity=-0.096 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---HHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP---YVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
++..+..+..+|...|++++|+..++++++++|+++.. |+.++.+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777777777777644 777777777777777777777777664
No 188
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.38 E-value=0.0085 Score=48.30 Aligned_cols=86 Identities=9% Similarity=-0.038 Sum_probs=36.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRA 453 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 453 (579)
+...+...|++++|..+|+.+... .| +...|..|..+|-..|++++|+..|.....- -+.|+..+-.+..++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI--KIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHc
Confidence 333344444444444444444442 22 2333333333444444444444444444431 122333344444444444
Q ss_pred CChHHHHHHHH
Q 047471 454 GKLLEAEEYTK 464 (579)
Q Consensus 454 g~~~~A~~~~~ 464 (579)
|+.+.|.+-|+
T Consensus 117 G~~~~A~~aF~ 127 (157)
T PRK15363 117 DNVCYAIKALK 127 (157)
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.38 E-value=0.058 Score=53.08 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh-----------h
Q 047471 406 TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP-LGQDP-----------I 473 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-----------~ 473 (579)
+...+...+.+...+.-|-++|..+-. ...+++.....++|.+|..+-++.+ ..||. .
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 333333334444555555555555532 1234555555666666666555553 22221 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
-|.-.-.++.+.|+..+|.++++++..
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233456677788888888888765
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0048 Score=59.18 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHhCcCChHHHHHHHHHHHHc--cCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC----CChhhHHHH
Q 047471 302 DDFTFASILAACAGLASVQHGKQIHAHLIRM--RLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH----RNVVSWNTI 375 (579)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l 375 (579)
+......++..+....+.+.+..++...... ....-+.+..++|+.|.+.|..+.+..+++.=.. ||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444444444444444444444444433 1111222333444444444444444444444322 444455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC 414 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 414 (579)
++.+.+.|++..|.++...|..++...+..|+...+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 555555555555555555544444444444444433333
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.00052 Score=47.78 Aligned_cols=65 Identities=22% Similarity=0.115 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRR-DVVIGERLAKQLFHLQP 503 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 503 (579)
++..|..+...+...|++++|+..|++. ...| ++..+..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777788888888888877775 3344 5567777777788888 68888888888888877
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.2 Score=50.03 Aligned_cols=207 Identities=9% Similarity=-0.048 Sum_probs=113.9
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHhcccCC-CCcccHHHHHH----------HHHhcCChHHHHHHHHHcccCCCHhh
Q 047471 34 QPDVIVSNHVLNLYAKCGKMILARKVFDEMSE-RNLVSWSAMIS----------GHHQAGEHLLALEFFSQMHLLPNEYI 102 (579)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~----------~~~~~g~~~~a~~~~~~~~~~p~~~~ 102 (579)
.|.+..|..+.......-.++.|...|-+... +.......|-. .-+--|.+++|.++|-.|...
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence 47777887777766666677777777765543 32222211111 122347888888888777544
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHh
Q 047471 103 FASAISACAGIQSLVKGQQIHAYSLKFGYAS----ISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVE 178 (579)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 178 (579)
...+....+.||+-...++++ .-|-.. -...++.+...++....+++|.+.+..... -...+.++.+
T Consensus 764 -DLAielr~klgDwfrV~qL~r---~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~ 834 (1189)
T KOG2041|consen 764 -DLAIELRKKLGDWFRVYQLIR---NGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYR 834 (1189)
T ss_pred -hhhHHHHHhhhhHHHHHHHHH---ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHH
Confidence 123344445555554444433 111111 124567777777888888888888765431 1224566666
Q ss_pred CCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHH
Q 047471 179 NQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKA 258 (579)
Q Consensus 179 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 258 (579)
..++++-..+-+.+ +.|....-.+..++.+.|.-++|.+.|- +.+.+ ...+..|...+++.+|.++
T Consensus 835 le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L---r~s~p------kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 835 LELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL---RRSLP------KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH---hccCc------HHHHHHHHHHHHHHHHHHH
Confidence 66666555544443 3334444455556666666555554432 22221 2445566666777777777
Q ss_pred HHhcCCCCcc
Q 047471 259 FRLIEEKDLI 268 (579)
Q Consensus 259 ~~~~~~~~~~ 268 (579)
-++..-|.+.
T Consensus 901 aq~~~l~qv~ 910 (1189)
T KOG2041|consen 901 AQRFQLPQVQ 910 (1189)
T ss_pred HHhccchhHH
Confidence 6666555433
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.35 E-value=0.00031 Score=43.47 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
.++..+...+...|++++|+++++++++.+|+|+..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999988887764
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.0022 Score=49.71 Aligned_cols=85 Identities=15% Similarity=-0.056 Sum_probs=44.0
Q ss_pred HHHHHhcCChHHHHHHHHhCC---CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCccHHHHHHHHHc
Q 047471 447 IDLLGRAGKLLEAEEYTKKFP---LGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT---TTSPYVLLSNLYAS 518 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~---~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 518 (579)
..++-..|+.++|+.+|++.. ... -...+..+.+++...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344444555555555555431 011 1123344555555666666666666666665555 44445555556666
Q ss_pred CCChHHHHHHHHH
Q 047471 519 DGMWGDVAGARKM 531 (579)
Q Consensus 519 ~g~~~~A~~~~~~ 531 (579)
.|+.++|.+.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666655443
No 195
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.32 E-value=0.03 Score=45.94 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC-----CChhhHH
Q 047471 299 VRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH-----RNVVSWN 373 (579)
Q Consensus 299 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 373 (579)
+.|+...-..+..+....|+..+|...|++...--+..|....-.+.++....+++..|...++++.+ .++.+--
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555555666666666666666666655544445555555555555666666666666555522 1222333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047471 374 TIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYF 427 (579)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (579)
.+...+...|.+.+|..-|+.... .-|+...-......+.++|+.+++..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 444555666666666666666665 2344333222333344555544444333
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.069 Score=50.29 Aligned_cols=161 Identities=19% Similarity=0.090 Sum_probs=93.0
Q ss_pred HHHHHHHhcCChHHHHHHHHccCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047471 343 ALVNMYAKCGLISCSYKLFNEMLHR-------NVVSWNTIIAAHAN---HRLGGSALKLFEQMKATGIKPDSVTFIGLLT 412 (579)
Q Consensus 343 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 412 (579)
.++-.|....+++..+++.+.+... ....-....-++.+ .|+.++|+.++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444455666666666666666332 11112223334455 6788888888888665555677777776666
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH----HHHHHH---Hh-C------CCC
Q 047471 413 ACNH---------AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLL----EAEEYT---KK-F------PLG 469 (579)
Q Consensus 413 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------~~~ 469 (579)
.|-. ....++|...|.+.- .+.|+...--.++..+...|... +..++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 223667777776554 33455433333344444444322 222222 11 1 122
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 470 QDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 470 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
.+--.+..++.++.-.||+++|.+.++++.++.|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3444556888899999999999999999999987753
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0042 Score=46.29 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHHhCCCCChhHH
Q 047471 373 NTIIAAHANHRLGGSALKLFEQMKATGI-KPDSVTFIGLLTACNHAG--------LVKEGEAYFNSMEKTYGISPDIEHF 443 (579)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 443 (579)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-..+.+|+.+... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3445566667999999999999999999 899999999998866532 355678889999887 899999999
Q ss_pred HHHHHHHHh
Q 047471 444 TCLIDLLGR 452 (579)
Q Consensus 444 ~~l~~~~~~ 452 (579)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887764
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.25 Score=49.83 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=76.7
Q ss_pred cchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047471 338 VGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHA 417 (579)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 417 (579)
..+.+--+.-+...|+..+|.++-.+..-||-..|..-+.+++..+++++-+++-+.++ .+.-|.....+|.+.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 33445555666777888888888888888888888888888888888877665544332 245566777788888
Q ss_pred CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047471 418 GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTK 464 (579)
Q Consensus 418 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (579)
|+.++|.+++-+.. |.+ ....+|.+.|++.+|.+.--
T Consensus 758 ~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHH
Confidence 88888888776653 211 45677777787777776533
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.24 Score=49.49 Aligned_cols=130 Identities=9% Similarity=-0.028 Sum_probs=74.7
Q ss_pred ChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcccCCCHhhHHHHHHH----------HhccCChHHHHH
Q 047471 52 KMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMHLLPNEYIFASAISA----------CAGIQSLVKGQQ 121 (579)
Q Consensus 52 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~----------~~~~~~~~~a~~ 121 (579)
..++|.+..+.- |.+..|..|.......-.++-|...|-+...-|.....-.+-.. -+--|++++|++
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 357777766653 66778888877766666667676666555433322111111111 122366667776
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-----CcchHHHHHHHHHhCCCcchHHHHHHHH
Q 047471 122 IHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEP-----NLVSFNALIAGFVENQQPEKGFEVFKLM 192 (579)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m 192 (579)
++-++-++++ -+..+.+.|++-...++++..... -...|+.+...+.....|++|.+.|..-
T Consensus 756 ~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 756 LYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6665554432 345566777777777777664321 1235666677777666777777666553
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0045 Score=55.88 Aligned_cols=93 Identities=9% Similarity=-0.026 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHH
Q 047471 443 FTCLIDLLGRAGKLLEAEEYTKKF-PLGQDP----IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT---SPYVLLSN 514 (579)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~ 514 (579)
|......+.+.|++++|...|+.+ ...|+. ..+..+...+...|++++|...|+++++..|+++ ..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333333334556666666666665 223332 3455555666666667777766666666665543 34444566
Q ss_pred HHHcCCChHHHHHHHHHHHhC
Q 047471 515 LYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~ 535 (579)
++...|+.++|..+++.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666776666666554
No 201
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0024 Score=58.80 Aligned_cols=129 Identities=10% Similarity=0.035 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhC--CCCCChhhHHHHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR-AGKLLEAEEYTKKF--PLGQDPIVLGTLLSA 481 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 481 (579)
.+|..++...-+.+..+.|..+|.++.+. -..+..+|-..+..-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46778888888888999999999999853 23345556665555444 56667799999997 345678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 482 CRLRRDVVIGERLAKQLFHLQPTTT---SPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+...|+.+.|..+|++++..-|... .+|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999766543 57888999999999999999999888764
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.26 E-value=0.0044 Score=46.18 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHhCcC--------ChHHHHHHHHHHHHccCCCCcchH
Q 047471 271 NTFIAACSHCADYEKGLSVFKEMSNDHGV-RPDDFTFASILAACAGLA--------SVQHGKQIHAHLIRMRLNQDVGVG 341 (579)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 341 (579)
...|..+...+++.....+|+.+++. |+ .|+..+|+.++.+..+.. +.-..+.+|+.|...++.|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566666779999999999999988 99 999999999999876543 355667788888888889998888
Q ss_pred hHHHHHHHh
Q 047471 342 NALVNMYAK 350 (579)
Q Consensus 342 ~~li~~~~~ 350 (579)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877665
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.22 E-value=0.12 Score=46.33 Aligned_cols=58 Identities=10% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCCH-HH---HHHHHHHHhCcCChHHHHHHHHHHHHcc
Q 047471 273 FIAACSHCADYEKGLSVFKEMSNDHGVRPDD-FT---FASILAACAGLASVQHGKQIHAHLIRMR 333 (579)
Q Consensus 273 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (579)
....+...|++++|...|+++... .|+. .. .-.+..++.+.++++.|...+++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344456677777777777777654 2322 11 1334456667777777777777776653
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.20 E-value=0.014 Score=45.22 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=62.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHH
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPD--SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLG 451 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 451 (579)
+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..++++....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888776654 34566677778888888888888888876421111 2222333445677
Q ss_pred hcCChHHHHHHHHh
Q 047471 452 RAGKLLEAEEYTKK 465 (579)
Q Consensus 452 ~~g~~~~A~~~~~~ 465 (579)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888876644
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.33 Score=49.05 Aligned_cols=103 Identities=12% Similarity=-0.045 Sum_probs=46.8
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcC
Q 047471 273 FIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCG 352 (579)
Q Consensus 273 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 352 (579)
-+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... .+.-|..++.++.+.|
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3344444455555554444432 3444455555555555555544333322211 1333444555555555
Q ss_pred ChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHH
Q 047471 353 LISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKL 391 (579)
Q Consensus 353 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (579)
+.++|.+.+.....-. -...+|.+.|++.+|.+.
T Consensus 759 n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHH
Confidence 5555555554442211 234445555555555443
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.16 E-value=0.0013 Score=46.27 Aligned_cols=64 Identities=13% Similarity=0.004 Sum_probs=48.4
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 447 IDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
...|.+.+++++|.++++++ ...| ++..+......+...|++.+|.+.++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34677888888888888886 3444 5566677777788889999999999999998887665443
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.14 E-value=0.034 Score=54.59 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=16.0
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCC
Q 047471 241 TIMALYSKFNLIGEAEKAFRLIEE 264 (579)
Q Consensus 241 ~l~~~~~~~~~~~~a~~~~~~~~~ 264 (579)
.+++.....+++++|..+-+..++
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc
Confidence 455666666777777777666665
No 208
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.13 Score=48.09 Aligned_cols=273 Identities=10% Similarity=-0.032 Sum_probs=144.6
Q ss_pred hHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHHHh
Q 047471 4 SISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQ 80 (579)
Q Consensus 4 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 80 (579)
.....-..+.+..++..|+..+...++..+ .+..-|..-+..+...|++++|.--.+.-.+ .....+...-+++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 444555667788899999999999999874 3355566666667777777777655543332 223344455555555
Q ss_pred cCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcC-CCchhHHHHHH-HHHHhcCChhHHHHHh
Q 047471 81 AGEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGY-ASISFVGNSLI-SMYMKVGYSSDALLVY 158 (579)
Q Consensus 81 ~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~~ 158 (579)
.++..+|.+.++.-. .+ ....+...++.+..... +|....+..|- .++.-.|++++|...-
T Consensus 130 ~~~~i~A~~~~~~~~------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQ------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred hHHHHHHHHHhhhhh------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 566656655555211 00 01111111222211111 12222222221 3455566666666555
Q ss_pred ccCCCCCcc-hHHHHHH--HHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHH---H----------HhcccCcccchhH
Q 047471 159 GEAFEPNLV-SFNALIA--GFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGL---E----------ICSVSNDLRKGMI 222 (579)
Q Consensus 159 ~~~~~~~~~-~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~----------~~~~~~~~~~a~~ 222 (579)
-.+.+.|.. .+..+++ ++.-.++.+.+...|++-+.. .|+...-...- + -..+.|.+..|.+
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 444433322 2233333 233456666666666666553 24433222111 1 1245566666666
Q ss_pred HHHHHHHhC---CCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcch---HHHHHHHHHhCCChHHHHHHHHHhhhC
Q 047471 223 LHCLTVKCK---LESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLIS---WNTFIAACSHCADYEKGLSVFKEMSND 296 (579)
Q Consensus 223 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~ 296 (579)
.|.+.+... ..++...|.....+..+.|+.++|+.--+...+-|..- +..-..++...+++++|.+-|+...+.
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666655432 34444555566666777778887777777766655432 222233455567777777777776654
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.025 Score=49.08 Aligned_cols=133 Identities=11% Similarity=0.026 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHH-----HH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHF-----TC 445 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ 445 (579)
.-+.++..+.-.|.+.-.+..+++.++...+.++.....+.+.-.+.||.+.|..+|++..+. .-..|...+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445566666666777777777777777654556666677777777778888888888766554 222222222 22
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 446 LIDLLGRAGKLLEAEEYTKKFPL--GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
....|.-++++.+|...+.++.. +.++...+.-.-...-.|+...|++..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23344555667777777766631 223344444333444567777777777777777766
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.06 E-value=0.034 Score=48.49 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=38.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHcCCChHHHH
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTS---PYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 526 (579)
+...|.+.|.+..|..-++.+++..|+++. ....++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 345578899999999999999999998754 4567788999999888544
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.0053 Score=56.61 Aligned_cols=129 Identities=12% Similarity=0.001 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHh---HHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-----CC---CCCh
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSM---EKTYGISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKF-----PL---GQDP 472 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p~~ 472 (579)
..|..|...|.-.|+++.|+...+.- .+.+|... ....+..|..+++-.|+++.|.+.++.- .+ ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34666666666778899988766543 22334332 2356778889999999999999988763 11 1123
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQ------PTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.+-.+|..+|....++++|+.++.+-+.+- ......+..|+.+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445567778888888999998887766532 2335678899999999999999988766554
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.012 Score=54.72 Aligned_cols=95 Identities=12% Similarity=-0.037 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-P-LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
.++..|.-++.+.+++.+|++..++. . .+++...+-.-..++...|+++.|+..|+++++++|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888999999999999988886 3 345777788888899999999999999999999999999999999888887
Q ss_pred CCChHH-HHHHHHHHHhC
Q 047471 519 DGMWGD-VAGARKMLKDS 535 (579)
Q Consensus 519 ~g~~~~-A~~~~~~~~~~ 535 (579)
.....+ ..++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 766555 48889999754
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.94 E-value=0.38 Score=45.59 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=100.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 047471 369 VVSWNTIIAAHANHRLGGSALKLFEQMKATG-IKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLI 447 (579)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 447 (579)
...|...++.-.+....+.|..+|-+..+.| +.++...++.++..++. |+...|..+|+.-... ++.+..--+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456677777777788899999999999988 56778888888876654 7888999999887764 333333345567
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 448 DLLGRAGKLLEAEEYTKKFP--LGQD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
.-+.+.++-+.|..+|+... +..+ ...|..++.--..-|+...+..+-+++.++.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 77788899999999998651 2222 467888888888889998888888888887776
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.84 E-value=0.017 Score=49.07 Aligned_cols=96 Identities=17% Similarity=0.284 Sum_probs=72.5
Q ss_pred HHHHcc--CCCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-------------
Q 047471 359 KLFNEM--LHRNVVSWNTIIAAHAN-----HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG------------- 418 (579)
Q Consensus 359 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------- 418 (579)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566667777766653 4666777777888888999999999999998876522
Q ss_pred ---CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 047471 419 ---LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGK 455 (579)
Q Consensus 419 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (579)
+-+-|++++++|... |+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 356789999999875 999999999999999987764
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0069 Score=56.20 Aligned_cols=64 Identities=6% Similarity=-0.032 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
.++..+..++.+.+++..|++...++++.+|+|....+.-+.+|...|+++.|+..|+++.+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 4567788888999999999999999999999999999999999999999999999999998653
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.09 Score=47.17 Aligned_cols=105 Identities=15% Similarity=0.048 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-ChhhH
Q 047471 401 KPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG---KLLEAEEYTKKF-PLGQ-DPIVL 475 (579)
Q Consensus 401 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 475 (579)
+-|...|..|...|...|+++.|...|....+ -.++++..+..+..++.... ...++.++|+++ ...| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 33678888888889999999999998888887 34566667777777665432 456777888886 4445 55666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 476 GTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 476 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
..|...+...|++.+|...|+.+++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66777788899999999999999998877543
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.76 E-value=0.087 Score=40.59 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=94.5
Q ss_pred HHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 047471 374 TIIAA--HANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG 451 (579)
Q Consensus 374 ~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (579)
.|+.+ +.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+.|.+.|- .....++.+|.
T Consensus 5 kLmeAK~~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~ 80 (161)
T PF09205_consen 5 KLMEAKERILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYA 80 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHH
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHH
Confidence 34444 55678888999998888773 35667777777666667777777888877654322221 11233444555
Q ss_pred hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 452 RAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
+.|. +...+...+.....+|.-+.-.+++..+.+.+..+|+....++.+|.+.|+..++-+++.+
T Consensus 81 ~~n~---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 81 KRNK---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HTT------------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred Hhcc---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4443 3344556677888899999999999999887777799999999999999999999999999
Q ss_pred HHhCCCC
Q 047471 532 LKDSGLK 538 (579)
Q Consensus 532 ~~~~~~~ 538 (579)
.-++|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 9998874
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.73 E-value=0.052 Score=43.04 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=53.4
Q ss_pred HHHHHhcCChHHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc---HHHHHHHHHc
Q 047471 447 IDLLGRAGKLLEAEEYTKKFP----LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP---YVLLSNLYAS 518 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 518 (579)
.....+.|++++|.+.|+.+. ..| ....-..++.++.+.+++++|...+++.+++.|.++.+ +...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 334456667777777666652 112 23445566677777778888888888888877776543 3444444444
Q ss_pred CCC---------------hHHHHHHHHHHHhC
Q 047471 519 DGM---------------WGDVAGARKMLKDS 535 (579)
Q Consensus 519 ~g~---------------~~~A~~~~~~~~~~ 535 (579)
+.. ..+|...|+.+.+.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 443 55666666666544
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.72 E-value=0.002 Score=46.06 Aligned_cols=61 Identities=10% Similarity=0.000 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC---CCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQ----PT---TTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.+++.+...+...|++++|+..+++++++. ++ ...++..++.++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666667777777777777777777532 22 23467788888888888888888888764
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.71 E-value=0.024 Score=44.54 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 398 TGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 398 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
....|+..+..+++.+|+..|++..|.++++.+.+.|+++.+..+|..|++-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999888888888887643
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.70 E-value=0.015 Score=49.38 Aligned_cols=97 Identities=14% Similarity=0.160 Sum_probs=69.8
Q ss_pred HHHHHhc--CCCCcchHHHHHHHHHhC-----CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCc------------
Q 047471 256 EKAFRLI--EEKDLISWNTFIAACSHC-----ADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGL------------ 316 (579)
Q Consensus 256 ~~~~~~~--~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~------------ 316 (579)
...|+.. ...+..+|..++..|.+. |..+=....++.|.+- |+.-|..+|+.|+..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 3444444 345666777777776643 5667677777888777 9999999999999887542
Q ss_pred ----CChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCC
Q 047471 317 ----ASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGL 353 (579)
Q Consensus 317 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 353 (579)
.+-+-+.+++++|...|+-||..++..+++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2456677888888888888888888888888776554
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.36 Score=49.43 Aligned_cols=56 Identities=5% Similarity=0.057 Sum_probs=42.3
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
.-++..+....+++.+..+.+...+.++..|..+++.+++.+..+...+...+..+
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 44667777788888888888888777888888888888888877666665555443
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.70 E-value=0.37 Score=42.04 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLL 450 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 450 (579)
+..++.-|-...-..+|...+..+.+. .-.. -..+...|.+.|.+..|..-++.+++.+.-.+. ......++.+|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 334444444445555555555444331 0111 112445577788888888888888775322221 13345566777
Q ss_pred HhcCChHHH
Q 047471 451 GRAGKLLEA 459 (579)
Q Consensus 451 ~~~g~~~~A 459 (579)
.+.|..+.|
T Consensus 189 ~~l~~~~~a 197 (203)
T PF13525_consen 189 YKLGLKQAA 197 (203)
T ss_dssp HHTT-HHHH
T ss_pred HHhCChHHH
Confidence 777766644
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.22 Score=43.49 Aligned_cols=126 Identities=11% Similarity=0.025 Sum_probs=59.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCh-----hhHHHHHH
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP---LGQDP-----IVLGTLLS 480 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~-----~~~~~l~~ 480 (579)
.++..+.-.|.+.-....+.+.++. .-+.++.....|++.-.+.|+.+.|..+|++.+ .+.+. .+......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3444444445555555555555543 323344444455555555555555555555331 11111 11222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.+.-++++.+|.+.+.+..+.+|.++...+.-+-++.-.|+..+|.+.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333455555555555555555555555555555555555555555555555443
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.53 E-value=0.009 Score=49.03 Aligned_cols=68 Identities=22% Similarity=0.270 Sum_probs=53.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCCCC
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD-----SGLKKEP 541 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 541 (579)
....++..+...|+++.|.+.+++++..+|-+...|..++.+|.+.|+..+|.+.++.+.+ .|+.|.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 4556677788899999999999999999999999999999999999999999999998853 4665543
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.46 E-value=0.87 Score=43.40 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=48.8
Q ss_pred hhhhcchhHHHHHHHHHHHh--cCCC------------CchhHHHHHHHHHccCChhHHHHHhcccCC--------CCcc
Q 047471 12 CSKTKALQQGISLHAAVLKM--GIQP------------DVIVSNHVLNLYAKCGKMILARKVFDEMSE--------RNLV 69 (579)
Q Consensus 12 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~ 69 (579)
+.+.+.++.|.+.+...... +..| |...-+..++++...|++.+++.+++++.. -+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34778889998888877665 3222 333446778888999999999999988764 3777
Q ss_pred cHHHHHHHHHh
Q 047471 70 SWSAMISGHHQ 80 (579)
Q Consensus 70 ~~~~l~~~~~~ 80 (579)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88875544443
No 227
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.36 E-value=0.89 Score=42.42 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=112.7
Q ss_pred HhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHH--HHHHHHHHhC---cCC
Q 047471 247 SKFNLIGEAEKAFRLIEEK---DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFT--FASILAACAG---LAS 318 (579)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~---~~~ 318 (579)
.+.|..+.|...-+..-.. -...+...+...|..|+++.|+++++.-+...-+.++..- -..|+.+-.. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4556666666665555432 2456778888889999999999998877665345555432 2223322211 123
Q ss_pred hHHHHHHHHHHHHccCCCCcchH-hHHHHHHHhcCChHHHHHHHHccC--CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047471 319 VQHGKQIHAHLIRMRLNQDVGVG-NALVNMYAKCGLISCSYKLFNEML--HRNVVSWNTIIAAHANHRLGGSALKLFEQM 395 (579)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 395 (579)
...|...-.+..+ +.||..-- ..-..++.+.|++.++-.+++.+- +|.+..+. +..+.+.|+ .+..-+++.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHH
Confidence 4444444333333 33443221 223456677777777777777763 23333222 222333443 333333333
Q ss_pred HH-CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhC
Q 047471 396 KA-TGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG-RAGKLLEAEEYTKKF 466 (579)
Q Consensus 396 ~~-~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 466 (579)
.+ ..++|| ..+...+..+-...|++..|..--+...+ ..|....|..|.+.-. ..|+-.++..++.+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 32 124444 44555556666666777766665555543 3566666666655543 347777777766654
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.33 E-value=0.0069 Score=43.28 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKFP-----LG---QD-PIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
+++.+...|...|++++|++.|++.. .. |+ ..++..+...+...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555544430 11 11 23455566666667777777777776665
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.05 Score=48.09 Aligned_cols=101 Identities=19% Similarity=0.114 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-ChhhHHHHH
Q 047471 406 TFIGLLTACNHAGLVKEGEAYFNSMEKTYGIS-PDIEHFTCLIDLLGRAGKLLEAEEYTKKF----PLGQ-DPIVLGTLL 479 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 479 (579)
.|+.-+. +.+.|++..|...|...++.|.-. -....+..|..++...|++++|..+|..+ +..| -+..+.-+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 344566777777777776642111 11233444666666666666666666554 1112 234455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
....+.|+.++|...|+++.+..|+++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 5566666777777777777776666543
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.2 Score=44.90 Aligned_cols=119 Identities=12% Similarity=0.014 Sum_probs=67.1
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH---HHHHHHhcCCHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGT---LLSACRLRRDVVI 490 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~ 490 (579)
....|++.+|...|+..... .+-+...--.++++|...|+.+.|..++..++......-+.. -+..+.+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 45566777777777666652 233344555666777777777777777777653333322222 2223333333332
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 491 GERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
... ++.-+..+|+|...-..++..+...|+.++|++.+=.+.++
T Consensus 222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 23334556777777777777777777777776665555443
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=96.18 E-value=0.085 Score=50.54 Aligned_cols=144 Identities=8% Similarity=0.019 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHhc---------cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 047471 384 LGGSALKLFEQMKA-TGIKPD-SVTFIGLLTACNH---------AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR 452 (579)
Q Consensus 384 ~~~~a~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (579)
..+.|+.+|.+... +.+.|+ ...|..+..++.. ..+..+|.+.-++..+ --+.|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 34567777877772 224555 4555555544322 1234455566666655 334456666666666667
Q ss_pred cCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH--HHHHHHHcCCChHHHHHH
Q 047471 453 AGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV--LLSNLYASDGMWGDVAGA 528 (579)
Q Consensus 453 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~ 528 (579)
.|+++.|..+|++. ...|+ ...|......+...|+.++|.+.++++++++|.....-. ..+..|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 77777777777776 34554 345555566666777777777777777777776433222 2223444433 4555555
Q ss_pred HH
Q 047471 529 RK 530 (579)
Q Consensus 529 ~~ 530 (579)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 44
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.15 E-value=0.65 Score=43.96 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCC-------CcchHHHHHHHHHh---CCChHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 047471 241 TIMALYSKFNLIGEAEKAFRLIEEK-------DLISWNTFIAACSH---CADYEKGLSVFKEMSNDHGVRPDDFTFASIL 310 (579)
Q Consensus 241 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 310 (579)
.++-.|....+++...++++.+... ....-....-++-+ .|+.++|++++..+... ...+++.++..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 4445577777777777777777653 11112233344555 67778888887775555 5566666776665
Q ss_pred HHH
Q 047471 311 AAC 313 (579)
Q Consensus 311 ~~~ 313 (579)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 543
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.14 E-value=0.86 Score=40.18 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=91.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh---
Q 047471 378 AHANHRLGGSALKLFEQMKATGI--KPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR--- 452 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 452 (579)
.-.+.|++++|.+.|+.+..... +-...+...++-++.+.++++.|+...++..+.++-.||.. |-..+.+++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcc
Confidence 34455666666666666665311 11234455555566666666666666666666655555543 2222222221
Q ss_pred ----cCChHHHHHHHHhC-------C---CCCChhhH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 453 ----AGKLLEAEEYTKKF-------P---LGQDPIVL------------GTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 453 ----~g~~~~A~~~~~~~-------~---~~p~~~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
..+...+.+-+..+ + -.||...- ..+...|.+.|.+..|..-++++++.-|+.+
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 12222222222222 2 11222110 2345568889999999999999999887766
Q ss_pred cc---HHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 507 SP---YVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 507 ~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.+ ...+..+|...|..++|.+.-+-+...
T Consensus 202 ~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 202 AVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred chHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 54 445677999999999998887776543
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.042 Score=48.53 Aligned_cols=96 Identities=14% Similarity=0.072 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CccHHHHH
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT---TSPYVLLS 513 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 513 (579)
.|+.-+. +.+.|++.+|..-|... ..-| .+..+--|..++...|+++.|..+|..+.+..|++ |+.+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 55778899999988886 2222 23344557888999999999999999999977665 56788999
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 514 NLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
.+..+.|+.++|..+|+.+.+.-+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999877544
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.61 Score=41.90 Aligned_cols=168 Identities=14% Similarity=0.056 Sum_probs=112.5
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhC
Q 047471 356 CSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYG 435 (579)
Q Consensus 356 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 435 (579)
...+.++....+....-..-.......|++.+|...|+...... +-+...-..+..+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 33444555544322222223345677899999999999988853 224556667888999999999999999987542 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCccHHHH
Q 047471 436 ISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ--PTTTSPYVLL 512 (579)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l 512 (579)
-.........-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++.+ -.+......+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111222234556666666666666666664456 66677778888889999999998888888765 4567788888
Q ss_pred HHHHHcCCChHHH
Q 047471 513 SNLYASDGMWGDV 525 (579)
Q Consensus 513 ~~~~~~~g~~~~A 525 (579)
+.++...|.-+.+
T Consensus 279 le~f~~~g~~Dp~ 291 (304)
T COG3118 279 LELFEAFGPADPL 291 (304)
T ss_pred HHHHHhcCCCCHH
Confidence 8888888855443
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=95.99 E-value=0.45 Score=45.84 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=82.3
Q ss_pred ChHHHHHHHHccC---CCC---hhhHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047471 353 LISCSYKLFNEML---HRN---VVSWNTIIAAHANH---------RLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHA 417 (579)
Q Consensus 353 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 417 (579)
..+.|..+|.+.. .-| ...|..+..++... .+..+|.+.-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3566777787776 333 33455444443321 23345666666666653 33666666666666667
Q ss_pred CCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh-CCCCCChh---hHHHHHHHHHhcCCHHHHH
Q 047471 418 GLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLLGRAGKLLEAEEYTKK-FPLGQDPI---VLGTLLSACRLRRDVVIGE 492 (579)
Q Consensus 418 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~---~~~~l~~~~~~~~~~~~A~ 492 (579)
++++.|...|++... +.|| ...|........-.|+.++|.+.+++ +...|... .....+..|+ ..-.+.|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 778888888888774 3454 34555555666677888888888777 45555432 2222232333 34466666
Q ss_pred HHHHH
Q 047471 493 RLAKQ 497 (579)
Q Consensus 493 ~~~~~ 497 (579)
+++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 66554
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.99 E-value=0.046 Score=52.20 Aligned_cols=62 Identities=13% Similarity=-0.013 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPI----VLGTLLSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
...++.+..+|...|++++|+..|++. ...|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444455555555555555555442 3344322 2445555555555555555555555554
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.97 E-value=0.41 Score=47.77 Aligned_cols=160 Identities=13% Similarity=0.024 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHHhHHHhCCCCChh
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATG-IKPDS-----VTFIGLLTACNH----AGLVKEGEAYFNSMEKTYGISPDIE 441 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 441 (579)
+..++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.|.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3445555566677777777777765522 22111 123333333322 45678888888888875 35555
Q ss_pred HHHH-HHHHHHhcCChHHHHHHHHhCCC-CC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH-HHH
Q 047471 442 HFTC-LIDLLGRAGKLLEAEEYTKKFPL-GQ-----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV-LLS 513 (579)
Q Consensus 442 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~l~ 513 (579)
.|.. -.+.+...|+.++|.+.|++... +. ....+--+.+.+....++++|...+.++.+.+.-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5543 35666778899999999887521 11 2234556667778889999999999999987766555544 445
Q ss_pred HHHHcCCCh-------HHHHHHHHHHHh
Q 047471 514 NLYASDGMW-------GDVAGARKMLKD 534 (579)
Q Consensus 514 ~~~~~~g~~-------~~A~~~~~~~~~ 534 (579)
-++...|+. ++|.+++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 577778888 888888887754
No 239
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.91 E-value=0.58 Score=36.27 Aligned_cols=138 Identities=10% Similarity=0.135 Sum_probs=79.7
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcch---HhHHHHHHHhcCC
Q 047471 277 CSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGV---GNALVNMYAKCGL 353 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 353 (579)
+.-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+ --|... ...++.+|++.|.
T Consensus 12 ~ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~ 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT-
T ss_pred HHHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc
Confidence 34457777778888777654 3444555555444444444444444444332 222222 2345666666654
Q ss_pred hHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 354 ISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 354 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
. .......+..+...|+-++-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.++-++
T Consensus 85 ~--------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 L--------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred h--------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3 233455667788888888888888888763 3677788888888999999999999998888876
Q ss_pred hCCC
Q 047471 434 YGIS 437 (579)
Q Consensus 434 ~~~~ 437 (579)
|++
T Consensus 150 -G~k 152 (161)
T PF09205_consen 150 -GLK 152 (161)
T ss_dssp -T-H
T ss_pred -chH
Confidence 653
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.81 E-value=0.092 Score=48.01 Aligned_cols=161 Identities=10% Similarity=0.050 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC----ChhHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKA-TGIKPD---SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP----DIEHF 443 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~ 443 (579)
|..+..++.+.-++.+++.+-+.-.. .|..|. .....++..++...+.++++++.|+...+--.-.. ...++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 33444444444445555544443332 122221 12233455556666667777777766654211111 22456
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-------CCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC----C
Q 047471 444 TCLIDLLGRAGKLLEAEEYTKKF-------PLGQ-----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ--PT----T 505 (579)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~----~ 505 (579)
-.|...|.+..++++|.-+..+. .... ...+...+.-++...|....|.+..+++.++. .. .
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 66667777777777666554442 1111 01122333445666777777777777766633 22 2
Q ss_pred CccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 506 TSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 506 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
......++++|...|+.+.|+.-++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 233445677777777777766655543
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.76 E-value=0.1 Score=40.15 Aligned_cols=88 Identities=20% Similarity=0.092 Sum_probs=48.1
Q ss_pred HHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----ccHHHHHHHHHcCCCh
Q 047471 449 LLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT----SPYVLLSNLYASDGMW 522 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 522 (579)
++...|+++.|++.|.+. .. +..+..|+.-..++..+|+.++|..-+++++++.-+.. ..|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555666666655553 12 22445566666666666666666666666666442211 2344455566666666
Q ss_pred HHHHHHHHHHHhCC
Q 047471 523 GDVAGARKMLKDSG 536 (579)
Q Consensus 523 ~~A~~~~~~~~~~~ 536 (579)
+.|+.-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555444
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.72 E-value=0.028 Score=32.14 Aligned_cols=32 Identities=13% Similarity=-0.014 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
.+..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777788888888888888777764
No 243
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.70 E-value=0.058 Score=50.09 Aligned_cols=128 Identities=11% Similarity=0.022 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHH----ccCC-CCcchHhHHHHHHHhcCChHHHHHHHHccC-------CCC--hh
Q 047471 305 TFASILAACAGLASVQHGKQIHAHLIR----MRLN-QDVGVGNALVNMYAKCGLISCSYKLFNEML-------HRN--VV 370 (579)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~--~~ 370 (579)
.|..+...|.-.|+++.|....+.-.. .|-. .....+..+..++.-.|+++.|.+.|+... ... ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556667888888877665332 2311 123456677788888899999998888651 222 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKA----TG-IKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 432 (579)
+..+|.++|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455677788877888888888765332 11 122356677888888888888888877665544
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.59 E-value=0.16 Score=41.57 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----HhCCCCChhHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEK----TYGISPDIEHF 443 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 443 (579)
...++..+...|++++|....+.+.... +-+...+..++.++...|+..+|.+.|+.+.+ ..|++|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556667777777777777777742 33667777777777777877777777776643 24677766543
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.57 E-value=0.58 Score=37.27 Aligned_cols=116 Identities=12% Similarity=0.005 Sum_probs=60.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKP--DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRA 453 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 453 (579)
.....+.|++++|.+.|+.+...-... ....-..++.++.+.+++++|...+++.++.+.-.|++ -|-..+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 334455666677766666666541111 23344556666666667777776666666654444432 233333333322
Q ss_pred CChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 454 GKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 454 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
...+..+.-+- .... ..+....|..-|+++++..|+++.
T Consensus 96 ~~~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCChh
Confidence 22211111111 1111 122356888889999999998753
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.52 E-value=0.026 Score=32.33 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777788888888888888888888876
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=95.50 E-value=0.37 Score=39.35 Aligned_cols=84 Identities=11% Similarity=-0.027 Sum_probs=38.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEA 459 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (579)
-..|++++|..+|+-+.-.+. -+..-+..|..++-..+++++|...|...... . .-|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 344555555555555444221 13333344444444455555555555544331 1 12233333344555555555555
Q ss_pred HHHHHhC
Q 047471 460 EEYTKKF 466 (579)
Q Consensus 460 ~~~~~~~ 466 (579)
+..|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555444
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.47 E-value=1.7 Score=38.58 Aligned_cols=198 Identities=17% Similarity=0.086 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHc-cCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--CCh-hhHHHHHH-
Q 047471 303 DFTFASILAACAGLASVQHGKQIHAHLIRM-RLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--RNV-VSWNTIIA- 377 (579)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 377 (579)
...+......+...+++..+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344555555556666666666666555542 2233444445555556666667777777776643 221 22222333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHh
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKP----DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLGR 452 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 452 (579)
.+...|+++.+...+.+... ..| ....+......+...++.+.+...+...... .+. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHH
Confidence 67788888888888888755 233 2333334444466777888888888888763 333 35667777777888
Q ss_pred cCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 453 AGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 453 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
.++++.|...+... ...|+ ...+......+...+..+.+...+.+..+..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888877775 33343 344445555555666788888888888888876
No 249
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.45 E-value=2.5 Score=40.36 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCh-hhHHHHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYG-ISPDIEHFTCLIDLLGRAGKLLEAEEYTKK-FPLGQDP-IVLGTLLSA 481 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~l~~~ 481 (579)
..|...+.+-.+..-++.|..+|-++.+. + +.+++..+++++..+ ..|+..-|..+|+- |..-||. ....-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45667777777888899999999999887 5 778888899988865 46888899999887 3434554 444566667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC--CccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 482 CRLRRDVVIGERLAKQLFHLQPTT--TSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
+..-+|-..|..+|+..++.-.++ ..+|..++.--..-|+...+..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 778899999999999777633222 56788888888888888777666666643
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.41 E-value=0.47 Score=45.84 Aligned_cols=141 Identities=16% Similarity=0.064 Sum_probs=69.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH--HhcCChH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL--GRAGKLL 457 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~ 457 (579)
-+..+...-++.-++..+ +.||..+...++ +-.......++.+++++..+. + ...+ .+.. ...|.
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~l---g~s~~~~~~g~-- 245 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASL---GKSQFLQHHGH-- 245 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhh---chhhhhhcccc--
Confidence 344555555666666666 556654333332 223344567777777776653 1 0000 0000 00111
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 458 EAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT--TTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 458 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..+.+.+-..+|-..+-..+...+.+.|+.++|++.++++++..|. +..+...|+.++...+.+.++..++.+-.+
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 1111111111222333344555556667777777777766665543 344566666677777777776666666543
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.39 E-value=1.2 Score=36.10 Aligned_cols=125 Identities=8% Similarity=-0.018 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG 451 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (579)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....+.. . .+......+++.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c----cccCCHHHHHHHHH
Confidence 3445555555666667777777666654 245556666666666542 3333333331 0 12222334555666
Q ss_pred hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 452 RAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLR-RDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
+.+-++++.-++.+++. +...+..+... ++++.|.+++.+ +.++..|..++..+
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 66666666666666541 12222223333 566666666554 23445555555444
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.39 E-value=1.8 Score=38.38 Aligned_cols=218 Identities=17% Similarity=0.081 Sum_probs=154.9
Q ss_pred CChHHHHHHHHHHHHccCC-CCcchHhHHHHHHHhcCChHHHHHHHHccCC-----CChhhHHHHHHHHHhcCChHHHHH
Q 047471 317 ASVQHGKQIHAHLIRMRLN-QDVGVGNALVNMYAKCGLISCSYKLFNEMLH-----RNVVSWNTIIAAHANHRLGGSALK 390 (579)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~ 390 (579)
+....+...+......... .....+......+...+.+..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443322 1346667777888889999998888887642 344556667777888888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 047471 391 LFEQMKATGIKPDSVTFIGLLT-ACNHAGLVKEGEAYFNSMEKTYGI--SPDIEHFTCLIDLLGRAGKLLEAEEYTKKF- 466 (579)
Q Consensus 391 ~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 466 (579)
.+.........+. ........ .+...|+++.|...+.+.... .- ......+......+...++.+++...+.+.
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888543331 22222233 688999999999999998542 11 123334444455567889999999998886
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 467 PLGQD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 467 ~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
...++ ...+..+...+...++++.|...+..+....|.....+..+...+...|..+++...++...+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33333 56777888888889999999999999999999866777788888887788999998888876543
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.21 Score=45.25 Aligned_cols=160 Identities=9% Similarity=-0.028 Sum_probs=115.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHH----HHHHHHhcCC
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTC----LIDLLGRAGK 455 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~ 455 (579)
.-+|++.+|-..++++.+. .+.|...+.-.-.+|...|+...-...++++... -.++...|.. +.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3568888888888888876 5667778888888899999998888888888763 3455544443 3455668899
Q ss_pred hHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CccHHHHHHHHHcCCChHHHHHHH
Q 047471 456 LLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT----TSPYVLLSNLYASDGMWGDVAGAR 529 (579)
Q Consensus 456 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 529 (579)
+++|.+.-++. .++| |.-...+....+-..|+.+++.++.++--..-..+ ..-|-+.+-.+...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988886 4444 55566677777777889999988877755433321 234667777888889999999999
Q ss_pred HHHHhCCCCCCCC
Q 047471 530 KMLKDSGLKKEPS 542 (579)
Q Consensus 530 ~~~~~~~~~~~~~ 542 (579)
++=.-+...++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765444444444
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.19 E-value=1.4 Score=35.71 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=65.7
Q ss_pred HHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCCh
Q 047471 5 ISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEH 84 (579)
Q Consensus 5 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 84 (579)
...++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+....++. ..+......+++.|.+.+.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 35678888888889999999999988874 77888999999998764 3455555552 23445556678888888888
Q ss_pred HHHHHHHHHcc
Q 047471 85 LLALEFFSQMH 95 (579)
Q Consensus 85 ~~a~~~~~~~~ 95 (579)
+++.-++.++.
T Consensus 86 ~~~~~l~~k~~ 96 (140)
T smart00299 86 EEAVELYKKDG 96 (140)
T ss_pred HHHHHHHHhhc
Confidence 88888888774
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.16 E-value=1.5 Score=42.60 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCh--hhHHHHH
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPL--GQDP--IVLGTLL 479 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~ 479 (579)
...-..+..++.+.|+.++|.+.++++.+.+....+......|+.++...+.+.++..++.+-.. -|.. ..|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33344566677889999999999999987533222445677899999999999999999888741 2322 3344433
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHhcCCCC
Q 047471 480 SACRLRRD---------------VVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 480 ~~~~~~~~---------------~~~A~~~~~~~~~~~p~~ 505 (579)
-.....+| -..|.+.+.++.+.+|--
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 33332232 234668889999888763
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.77 Score=41.83 Aligned_cols=175 Identities=10% Similarity=0.010 Sum_probs=115.6
Q ss_pred HhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHH
Q 047471 349 AKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVT----FIGLLTACNHAGLVK 421 (579)
Q Consensus 349 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~ 421 (579)
...|+..+|...++++++ .|...+.---.+|.-.|+.+.-...+++.... -.||... -..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346788888888888854 46667777778899999999999999988764 2444432 233344467889999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCh-----hhHHHHHHHHHhcCCHHHHHHHH
Q 047471 422 EGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLG-QDP-----IVLGTLLSACRLRRDVVIGERLA 495 (579)
Q Consensus 422 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~-----~~~~~l~~~~~~~~~~~~A~~~~ 495 (579)
+|.+.-++..+ -.+.|...-.++...+...|++.++.+++.+-+.. .+. ..|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888876 33456666777888888999999999998886411 111 11112222234568899999999
Q ss_pred HHHH--hcCCCCCc---cHHHHHHHHHcCCChHHHH
Q 047471 496 KQLF--HLQPTTTS---PYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 496 ~~~~--~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 526 (579)
++=+ +++.++.. .|..+-.+..+.-.|.+-.
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld 306 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLD 306 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHH
Confidence 8543 34555553 3333444555544444433
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.10 E-value=4 Score=40.65 Aligned_cols=407 Identities=10% Similarity=0.043 Sum_probs=205.3
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHH-HHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 047471 67 NLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASA-ISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISM 144 (579)
Q Consensus 67 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (579)
+...|..++.---...+.+.+..++..+... |...-|-.- ...=.+.|..+.+.++|++.+. |++.+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 4455666665444444456666677766655 665533222 2222467888888888888775 556666666666554
Q ss_pred HH-hcCChhHHHHHhccCCC------CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcc
Q 047471 145 YM-KVGYSSDALLVYGEAFE------PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDL 217 (579)
Q Consensus 145 ~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 217 (579)
+. ..|+.+.....|+.... .+...|...|.--..++++.....+|++..+. |. ..|+....-+
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f------ 192 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRF------ 192 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHH------
Confidence 43 45666666666666332 34456777888778888888888888888763 32 1222111111
Q ss_pred cchhHHHHHHHHhCCCCCh---hHHhHHHHHHH------hcC-ChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 047471 218 RKGMILHCLTVKCKLESNP---FVGNTIMALYS------KFN-LIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGL 287 (579)
Q Consensus 218 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~------~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 287 (579)
.+..+....... .....+..... ..+ ..+......+.+.++.. ..+++.
T Consensus 193 -------~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~--------------~l~~~~ 251 (577)
T KOG1258|consen 193 -------KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSK--------------SLTEEK 251 (577)
T ss_pred -------HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccc--------------hhhHHH
Confidence 111111000000 00000000000 000 01111111111111100 000000
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHc---cC----CCCcchHhHHHHHHHhcCChHHHHHH
Q 047471 288 SVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRM---RL----NQDVGVGNALVNMYAKCGLISCSYKL 360 (579)
Q Consensus 288 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~li~~~~~~g~~~~A~~~ 360 (579)
....+... .--..+...-........++.-.+. .+ ++....|+..+..-.+.|+.+.+.-+
T Consensus 252 ~~l~~~~~------------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l 319 (577)
T KOG1258|consen 252 TILKRIVS------------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFIL 319 (577)
T ss_pred HHHHHHHH------------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHH
Confidence 00000000 0000000111111111111111111 01 22334556666666777788777777
Q ss_pred HHccCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCC
Q 047471 361 FNEMLHRN---VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGIS 437 (579)
Q Consensus 361 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 437 (579)
|+...-|- ...|-..+.-....|+.+-|..++....+--++-.+.+-..-...+-..|++..|..+++.+.+. .
T Consensus 320 ~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~- 396 (577)
T KOG1258|consen 320 FERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y- 396 (577)
T ss_pred HHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-
Confidence 77764432 22344444444444888888888777666433323332222222255678999999999999885 3
Q ss_pred CChh-HHHHHHHHHHhcCChHHHH---HHHHhC-CCCCChhhHHHHH----HH-HHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 438 PDIE-HFTCLIDLLGRAGKLLEAE---EYTKKF-PLGQDPIVLGTLL----SA-CRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 438 ~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~----~~-~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
|+.. .-..-+....+.|+.+.+. +++... +.+-+..+...+. +. +...++.+.|..++.++.+..|++..
T Consensus 397 pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 397 PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 5432 2223345566788888877 444443 2223333332222 22 34478999999999999999999998
Q ss_pred cHHHHHHHHHcCC
Q 047471 508 PYVLLSNLYASDG 520 (579)
Q Consensus 508 ~~~~l~~~~~~~g 520 (579)
.|..++......+
T Consensus 477 ~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 477 LYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhCC
Confidence 8988888776665
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.02 E-value=1.4 Score=43.98 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=96.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHH-----HHHHHHHHHhC----cCChHHHHHHHHHHHHccCCCCcc
Q 047471 269 SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDF-----TFASILAACAG----LASVQHGKQIHAHLIRMRLNQDVG 339 (579)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 339 (579)
....++....=.||-+.+++.+.+..+..++.-... .|..++..+.. ..+.+.+.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 445555666666777888877777655533333222 23333333322 44677788888777765 34544
Q ss_pred hHhH-HHHHHHhcCChHHHHHHHHccCC-------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047471 340 VGNA-LVNMYAKCGLISCSYKLFNEMLH-------RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLL 411 (579)
Q Consensus 340 ~~~~-li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 411 (579)
.|.. -.+.+...|++++|++.|+.... -....+--+.-++.-.++|++|...|..+.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 4433 24556667888888888886532 223345556666777888888888888888742 33444554444
Q ss_pred HH-HhccCCH-------HHHHHHHHHhHH
Q 047471 412 TA-CNHAGLV-------KEGEAYFNSMEK 432 (579)
Q Consensus 412 ~~-~~~~~~~-------~~a~~~~~~~~~ 432 (579)
.+ +...|+. ++|.+++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44 3455666 677777766643
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.01 E-value=0.71 Score=45.39 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=19.8
Q ss_pred HHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047471 450 LGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQ 497 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 497 (579)
..+.|+++.|.++.++.. ++..|..|......+|+++-|++.+++
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444444444433322 334444444444444444444444444
No 260
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.95 E-value=0.31 Score=38.28 Aligned_cols=49 Identities=8% Similarity=-0.036 Sum_probs=29.7
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 047471 265 KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAAC 313 (579)
Q Consensus 265 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 313 (579)
|+.....+++.+|+..|++..|+++++...+..+++.+..+|..|+.-+
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4455566666666666666666666666666556655666666555543
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=2.8 Score=36.63 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCccHHHHHHHHHcCCChHHHH
Q 047471 476 GTLLSACRLRRDVVIGERLAKQLFHL----QPTTTSPYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 476 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~ 526 (579)
...+-.+....|+..|++.++...+. .|++..+...|+.+| ..|+.+++.
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 33344444455666666666654442 244444455555444 234444443
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.64 E-value=3.5 Score=39.64 Aligned_cols=150 Identities=11% Similarity=-0.067 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC--hh
Q 047471 367 RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP---DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD--IE 441 (579)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 441 (579)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567778888888899998888888887743221 2233333445566778888888888877762 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCChhhHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 442 HFTCLIDLLGRAGKLLEAEEY-TKKFPLGQDPIVLGTLLSACRLR------RDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
....+...+.. ..+..... ........-...+..+..-+... ++.+++...|+.+.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012222233333333 78899999999999999998888888877
Q ss_pred HHHcC
Q 047471 515 LYASD 519 (579)
Q Consensus 515 ~~~~~ 519 (579)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 66553
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.59 E-value=0.11 Score=39.95 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
-+....|+.+.|++.|.+++.+-|.+++.|+.-+.++.-+|+.++|+.-+++..+..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 346778999999999999999999999999999999999999999999999887653
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.59 E-value=0.78 Score=45.14 Aligned_cols=127 Identities=14% Similarity=-0.001 Sum_probs=77.7
Q ss_pred HHHHhcCChHHHHHHHH--HcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhH
Q 047471 76 SGHHQAGEHLLALEFFS--QMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSD 153 (579)
Q Consensus 76 ~~~~~~g~~~~a~~~~~--~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (579)
....-.++++++.++.+ ++...-+..-.+.++.-+-+.|..+.|.++-..- ..-.....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHH
Confidence 44566788888776665 3332212455777788888888888887774432 123455678999999
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHH
Q 047471 154 ALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHC 225 (579)
Q Consensus 154 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 225 (579)
|.++.++.. +...|..|.....++|+++-|.+.|.+..+ |..|+-.+...|+.+.-.++-.
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 999988775 556899999999999999999999888643 3344444444444444333333
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.34 E-value=0.14 Score=42.68 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=67.6
Q ss_pred HHhccCCHHHHHHHHHHhHHHhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhc
Q 047471 413 ACNHAGLVKEGEAYFNSMEKTYGISPDI-----EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSACRLR 485 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 485 (579)
-+.+.|++++|..-|..++.. +++.. ..|..-.-++.+.+.++.|++-..+. .+.|. ...+..-..+|-+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 477889999999999888873 44432 22333345677888888888876664 44552 23333334567777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 486 RDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 486 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
..+++|++-|.++++.+|....+....+++
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 888888888888888888876555555443
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.32 E-value=3 Score=35.68 Aligned_cols=160 Identities=14% Similarity=0.036 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 369 VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
+..||-|.--+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++.-|.+-+...-+...-.|-...|-.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY--- 174 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY--- 174 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHH---
Confidence 3456666666777777888888877777743222222222222 344557777777666655542111221222211
Q ss_pred HHHhcCChHHHHHH-HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CccHHHHHHHHHcCC
Q 047471 449 LLGRAGKLLEAEEY-TKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT-------TSPYVLLSNLYASDG 520 (579)
Q Consensus 449 ~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 520 (579)
.-...-++.+|..- .++.. ..|...|...+-.+.. |+. ..+.+++++.+-..++ .++|..|+.-+...|
T Consensus 175 l~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 11233455666543 33332 3344445444333321 111 1122233333322222 357888888889999
Q ss_pred ChHHHHHHHHHHHhC
Q 047471 521 MWGDVAGARKMLKDS 535 (579)
Q Consensus 521 ~~~~A~~~~~~~~~~ 535 (579)
+.++|..+++.....
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999888876543
No 267
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.17 E-value=0.59 Score=41.46 Aligned_cols=99 Identities=21% Similarity=0.214 Sum_probs=74.8
Q ss_pred HHHHHHccC--CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 047471 357 SYKLFNEML--HRNVVSWNTIIAAHAN-----HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG----------- 418 (579)
Q Consensus 357 A~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 418 (579)
.++.|..+. +.|-.+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555554 5677778777777654 3556666777888999999999999999998776532
Q ss_pred -----CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047471 419 -----LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 419 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
+-+-+++++++|... |+.||..+-..|++++++.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 234578899999875 9999999999999999888753
No 268
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.96 E-value=3.2 Score=39.95 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=55.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 470 QDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP----TTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 470 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
....+|..+...+.+.|.++.|...+.++.+.++ ..|.+....+..+...|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999998662 24677888899999999999999999888773
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.92 E-value=6 Score=42.87 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=84.7
Q ss_pred cCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhc----ccCcccchhHH
Q 047471 148 VGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICS----VSNDLRKGMIL 223 (579)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~ 223 (579)
.++++.|+..+..+. ...|.-.++.--+.|.+.+|+.++ .|+...+..+..+|+ ....++.|
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A--- 958 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA--- 958 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH---
Confidence 467777777665553 334555666666778888888775 466655554443332 22233322
Q ss_pred HHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH
Q 047471 224 HCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD 303 (579)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 303 (579)
.-+|.++|+.++|.+ +|..+|++++|+.+-.++... -+.
T Consensus 959 -------------------al~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~~----~de 997 (1265)
T KOG1920|consen 959 -------------------ALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSEG----KDE 997 (1265)
T ss_pred -------------------HHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcCC----HHH
Confidence 234455555555543 344556667766666655321 121
Q ss_pred H--HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC
Q 047471 304 F--TFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML 365 (579)
Q Consensus 304 ~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 365 (579)
. +-..|..-+...+++-+|-++..+....- ...+..|++...+++|.++-....
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~--------~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLSDP--------EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhcCH--------HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1 12445555666666666666665555431 334555666666777776665544
No 270
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.84 E-value=0.19 Score=40.99 Aligned_cols=129 Identities=9% Similarity=0.057 Sum_probs=87.9
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHH
Q 047471 7 SLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLL 86 (579)
Q Consensus 7 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 86 (579)
.+++.+...+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46778888999999999999999888777788999999999999998999999884433 444567777788888888
Q ss_pred HHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 047471 87 ALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGY 150 (579)
Q Consensus 87 a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (579)
+.-++.++.... ..+..+...++++.|.+... -.++..+|..+++.+...++
T Consensus 89 a~~Ly~~~~~~~------~al~i~~~~~~~~~a~e~~~------~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHD------EALEILHKLKDYEEAIEYAK------KVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHT------TCSSTSSSTHCSCCCTTTGG------GCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHH------HHHHHHHHHccHHHHHHHHH------hcCcHHHHHHHHHHHHhcCc
Confidence 888888764321 11111223344444442221 12356777777777766554
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.82 E-value=1.2 Score=36.57 Aligned_cols=121 Identities=17% Similarity=0.122 Sum_probs=77.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChh-HHHHH--HHHHHhcC
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSV-TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIE-HFTCL--IDLLGRAG 454 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g 454 (579)
+.+.+..++|+.-|..+.+.|...=+. .-..........|+...|...|+++-.. .-.|-.. -...| ..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 345677788888888888866542111 1112233366788888899999888765 2223221 11222 23456788
Q ss_pred ChHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 455 KLLEAEEYTKKFPLGQD---PIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 455 ~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
.++......+.+....+ ...-..|.-+-.+.|++..|...|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888887742322 23455677777889999999999988877
No 272
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.57 E-value=0.14 Score=29.17 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4455666667777777777777777777664
No 273
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.44 E-value=15 Score=43.22 Aligned_cols=307 Identities=9% Similarity=0.036 Sum_probs=154.5
Q ss_pred HhcccCcccchhHHHHHHHHhCC--CCChhHHhHHHHHHHhcCChhHHHHHHHh-cCCCCcchHHHHHHHHHhCCChHHH
Q 047471 210 ICSVSNDLRKGMILHCLTVKCKL--ESNPFVGNTIMALYSKFNLIGEAEKAFRL-IEEKDLISWNTFIAACSHCADYEKG 286 (579)
Q Consensus 210 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 286 (579)
+-.+.+.+..|...++.-..... ......+-.+...|+..+++|....+... ..+++ ...-|......|+++.|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence 44455555556555555210000 11122333444577777777776666652 33332 22234445667888888
Q ss_pred HHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC
Q 047471 287 LSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML 365 (579)
Q Consensus 287 ~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 365 (579)
...|+.+.+. .|+ ..+++.++......|.++...-..+-.....-+.....++.=+.+--+.++++.....+.
T Consensus 1469 ~~Cye~~~q~---~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK---DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcC---CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888743 444 556666666666667666666544443332211111222222334455666665555544
Q ss_pred CCChhhHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047471 366 HRNVVSWNTI--IAAHANHR--LGGSALKLFEQMKATGIKP--------D-SVTFIGLLTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 366 ~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~m~~~~~~p--------~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 432 (579)
..+..+|... +....+.. |.-.-....+-+++.-+.| + ...|..++....-. +.+.-.+.
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~------ 1615 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEE------ 1615 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHH------
Confidence 3444455443 22222222 1111222333333321111 0 01222222221110 01111111
Q ss_pred HhCCCCChh------HHHHHHHHHHhcCChHHHHH---HHHh----CCCCCC-----hhhHHHHHHHHHhcCCHHHHHHH
Q 047471 433 TYGISPDIE------HFTCLIDLLGRAGKLLEAEE---YTKK----FPLGQD-----PIVLGTLLSACRLRRDVVIGERL 494 (579)
Q Consensus 433 ~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~---~~~~----~~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~ 494 (579)
..++.++.. .|..-+. +.+....+.+ -+++ ....|+ ..+|....+.+...|.++.|...
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred hhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 112333221 1211111 1222111222 1121 112222 36788888889999999999999
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 495 AKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 495 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
+-.+.+..+ +.++...+..++..|+...|+.++++-.+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 999888884 57899999999999999999999999876543
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.42 E-value=6.4 Score=36.33 Aligned_cols=18 Identities=0% Similarity=-0.217 Sum_probs=11.7
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 047471 482 CRLRRDVVIGERLAKQLF 499 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~ 499 (579)
+.+.++++.|...|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 455677777777776544
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.40 E-value=3.9 Score=33.86 Aligned_cols=135 Identities=9% Similarity=0.126 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcC--ChHHHHHHHHHcccCCC
Q 047471 22 ISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAG--EHLLALEFFSQMHLLPN 99 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~p~ 99 (579)
.+..+.+.+.+++|+...+..+++.+.+.|++.....++..-.=+|.......+-.+.... -..-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 4566677778888888899999999999998888877776644444443332222211110 0122233333321
Q ss_pred HhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhC
Q 047471 100 EYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVEN 179 (579)
Q Consensus 100 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 179 (579)
..+..++..+...|++-+|+++.+.....+......++.+..+.
T Consensus 90 ------------------------------------~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~ 133 (167)
T PF07035_consen 90 ------------------------------------TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANS 133 (167)
T ss_pred ------------------------------------hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHc
Confidence 12244556667778888888877765444444556677777777
Q ss_pred CCcchHHHHHHHHHHCC
Q 047471 180 QQPEKGFEVFKLMLRQG 196 (579)
Q Consensus 180 ~~~~~a~~~~~~m~~~g 196 (579)
++...-..+|+-..+++
T Consensus 134 ~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 134 NDDQLFYAVFRFFEERN 150 (167)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 77766666666665543
No 276
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.27 E-value=0.25 Score=30.36 Aligned_cols=41 Identities=10% Similarity=0.007 Sum_probs=30.1
Q ss_pred cchHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHH
Q 047471 2 AKSISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHV 43 (579)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 43 (579)
+..+..+...+...|++++|.++++.+++..+ -|...+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 45677888888888888888888888888763 344454443
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.14 E-value=0.44 Score=43.01 Aligned_cols=59 Identities=20% Similarity=0.132 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
++..++..+...|+.+.+.+.++++ ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444445555555555555544443 2222 444455555555555555555555554444
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.12 E-value=4.1 Score=33.29 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=66.5
Q ss_pred HHHHHHHHH---HhccCCHHHHHHHHHHhHHHhCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHH
Q 047471 405 VTFIGLLTA---CNHAGLVKEGEAYFNSMEKTYGISPDIEHFT-CLIDLLGRAGKLLEAEEYTKKFP-LGQDPIVLGTLL 479 (579)
Q Consensus 405 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 479 (579)
.+.+.|+.. -...++.+.+..+++.+. -+.|...... .-...+...|++.+|..+|+++. ..|....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334444443 345677888888888776 3455543332 22445677888888888888874 334445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHH
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 526 (579)
..|.....-..-..+.+++++.+++ +. -..++..+........|.
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESGAD-PD-ARALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchh
Confidence 6666655555555666666666653 22 233444444443333333
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.03 E-value=0.17 Score=29.39 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 509 YVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 509 ~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
+..|+.+|.+.|++++|++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678888888888888888888743
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.98 E-value=0.69 Score=36.90 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=48.0
Q ss_pred hcCChHHHHHHHHhCC-CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChH
Q 047471 452 RAGKLLEAEEYTKKFP-LGQDPIVL-GTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWG 523 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 523 (579)
..++++++..++..+. ..|+.... ..-.+.+...|++.+|.++++.+.+..+..|..-..++.++...|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4677888888777762 44443322 223344667788888888888887777776666667777777777643
No 281
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=13 Score=38.52 Aligned_cols=98 Identities=9% Similarity=0.061 Sum_probs=60.3
Q ss_pred hhhcchhHHHHHHHHHHHhcCCC---CchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHH
Q 047471 13 SKTKALQQGISLHAAVLKMGIQP---DVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALE 89 (579)
Q Consensus 13 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 89 (579)
.+.+.+++|+..-+.... ..| ........+..+.-.|++++|-...-.|-..+..-|..-+..+...++......
T Consensus 367 l~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 445666666666554332 223 234567778888888888888888777777777777777777776666654443
Q ss_pred HHHHcccCCCHhhHHHHHHHHhc
Q 047471 90 FFSQMHLLPNEYIFASAISACAG 112 (579)
Q Consensus 90 ~~~~~~~~p~~~~~~~ll~~~~~ 112 (579)
++=.-....+...|..++..+..
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH
Confidence 33222222344567666666654
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.82 E-value=8.2 Score=35.96 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHhCcCChHHHHHHHHHHHHccC-----CCCcch
Q 047471 269 SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD---DFTFASILAACAGLASVQHGKQIHAHLIRMRL-----NQDVGV 340 (579)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 340 (579)
+|..+.+++-+..++.+++.+-+.-...+|..|. .....++..++...+.++++.+.|+...+... .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555666666666666666666555544444442 12334456677777888888888887765321 112467
Q ss_pred HhHHHHHHHhcCChHHHHHHHHccC-------CCChh-hH-----HHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC
Q 047471 341 GNALVNMYAKCGLISCSYKLFNEML-------HRNVV-SW-----NTIIAAHANHRLGGSALKLFEQMKA----TGIKPD 403 (579)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~-----~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~ 403 (579)
+..|...|.+..++++|.-+..+.. -.|.. -| ..|.-++...|....|.+.-++..+ .|-+|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 7888888888888888776665541 12222 12 2244556677888778777776544 343322
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047471 404 -SVTFIGLLTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 404 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 432 (579)
......+.+.|...|+.+.|+.-|+....
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23445566667788888888877776653
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.81 E-value=0.69 Score=37.64 Aligned_cols=83 Identities=23% Similarity=0.058 Sum_probs=60.0
Q ss_pred hHHHHHHHHH---HhcCChHHHHHHHHhCC-CCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 441 EHFTCLIDLL---GRAGKLLEAEEYTKKFP-LGQDPIVLG-TLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 441 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~p~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
.+.+.|+..+ .+.++.+++..++..+. ..|...... .-.+.+...|++.+|.++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555443 46788899999888873 556544433 334456788999999999999888888888888888888
Q ss_pred HHcCCChH
Q 047471 516 YASDGMWG 523 (579)
Q Consensus 516 ~~~~g~~~ 523 (579)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 88888754
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=6.1 Score=34.39 Aligned_cols=52 Identities=4% Similarity=-0.136 Sum_probs=27.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCc-------cHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTS-------PYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
...+++.+|+.+|+++....-+|+- .+..-+.++...++.-.+...+++-.+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 3456677777777777665544332 222233344444555555555555443
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.78 E-value=12 Score=37.58 Aligned_cols=95 Identities=7% Similarity=-0.091 Sum_probs=41.6
Q ss_pred hHHhHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 047471 237 FVGNTIMALYSKFNLIGEAEKAFRLIEEKD---LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAAC 313 (579)
Q Consensus 237 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 313 (579)
.+|...+..-...|+.+.+.-+|++..-|- ...|-..++-....|+.+-|-.++....+- -++-.+.+-..-...+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHHHH
Confidence 344445555555566666655555554431 123434444444445555555554444332 2222221111111122
Q ss_pred hCcCChHHHHHHHHHHHHc
Q 047471 314 AGLASVQHGKQIHAHLIRM 332 (579)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~ 332 (579)
-..|+...|..+++.+.+.
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 3345555555555555543
No 286
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=6.4 Score=34.27 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=32.7
Q ss_pred HhcCChHHHHHHHHhCC---CCCChhhH---HHHHH--HHHh-cCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 451 GRAGKLLEAEEYTKKFP---LGQDPIVL---GTLLS--ACRL-RRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 451 ~~~g~~~~A~~~~~~~~---~~p~~~~~---~~l~~--~~~~-~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
...+++.+|.++|+.+. ...+..-| ..++. .|.. ..|.-.+...+++..+++|.-..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 45677777777777651 11111111 11222 1322 367788888888888888875444
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=5.6 Score=33.59 Aligned_cols=113 Identities=13% Similarity=0.029 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHH-----HHHHHHHhcCChHHH
Q 047471 387 SALKLFEQMKATGIKPDSVTFI--GLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFT-----CLIDLLGRAGKLLEA 459 (579)
Q Consensus 387 ~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A 459 (579)
+.....+++....-....-++. .+...+...+++++|..-++..... +.| ..+. .|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555565532122222222 2344577888889888888877642 222 2222 345667788888999
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 460 EEYTKKFPLGQD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 460 ~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
+..++... .++ ......-...+...|+-++|+..|+++++.+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888875 232 223344445677888888888888888887744
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.61 E-value=0.22 Score=28.92 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
++..|...|...|++++|++++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888885543
No 289
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.55 E-value=1.1 Score=39.93 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=73.7
Q ss_pred HHHHHHhcC--CCCcchHHHHHHHHHhC-----CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcC----------
Q 047471 255 AEKAFRLIE--EKDLISWNTFIAACSHC-----ADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLA---------- 317 (579)
Q Consensus 255 a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~---------- 317 (579)
.++.|.... ++|..+|...+..+... +..+-....++.|.+- |+.-|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 345555555 45677777777766543 4566666777888777 99999999999998875532
Q ss_pred ------ChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCCh
Q 047471 318 ------SVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLI 354 (579)
Q Consensus 318 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 354 (579)
+-+-+..++++|...|+-||..+-..+++++.+.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3345778889999999999999988899998887764
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=16 Score=38.32 Aligned_cols=118 Identities=11% Similarity=-0.029 Sum_probs=62.1
Q ss_pred HHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHH----HHHHhcCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCC
Q 047471 40 SNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMI----SGHHQAGEHLLALEFFSQMHLLPNEYIFASAISACAGIQS 115 (579)
Q Consensus 40 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 115 (579)
...-++.+.+...++-|+.+-+.-.. |..+...+. .-+.+.|++++|..-|-+-....+ -..+++-+.....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le---~s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE---PSEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC---hHHHHHHhcCHHH
Confidence 34556666666667777666655332 222222232 233456777777766544432211 1234444444445
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 047471 116 LVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF 162 (579)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (579)
+.+-..+++.+.+.|+.-. ..-..|+.+|.+.++.+.-.+..+...
T Consensus 413 IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555556666666665433 233556677777777666665555443
No 291
>PRK10941 hypothetical protein; Provisional
Probab=92.47 E-value=1 Score=40.82 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 475 LGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 475 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
.+.+-.++.+.++++.|.++.+.++.+.|+++.-+...+-+|.+.|.+..|..-++...+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 456667789999999999999999999999999999999999999999999999998876643
No 292
>PRK09687 putative lyase; Provisional
Probab=92.27 E-value=9.2 Score=35.23 Aligned_cols=73 Identities=10% Similarity=-0.017 Sum_probs=32.7
Q ss_pred ChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 047471 235 NPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAAC 313 (579)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 313 (579)
+..+....+.++.+.|+......+.+.+..++ .....+.++...|+. +|+..+..+.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh---CCChhHHHHHHHHH
Confidence 33444444555555555333333333333333 223445555555553 455555555532 33544444444333
No 293
>PRK09687 putative lyase; Provisional
Probab=91.91 E-value=10 Score=34.95 Aligned_cols=135 Identities=12% Similarity=-0.082 Sum_probs=62.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHHHhCCCCChhHHHH
Q 047471 367 RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG-LVKEGEAYFNSMEKTYGISPDIEHFTC 445 (579)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
++..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444445555555554 3455555555442 23333333333444332 12344444444443 245555555
Q ss_pred HHHHHHhcCChHHHHHHH-HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 446 LIDLLGRAGKLLEAEEYT-KKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
.+.++++.|+. .|...+ +.+. .++ .....+.++...|+. +|...+..+.+.+| |+.......++
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a 276 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDK 276 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHH
Confidence 56666666653 344333 3332 222 233455555556653 56666666666555 34443333333
No 294
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.76 E-value=10 Score=35.24 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCC--HHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 386 GSALKLFEQMKATGIKPDS--VTFIGLLTACNHAGL--VKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+. ++++....|..++-.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 5677788888887877642 334444433333222 44778888888887 888887777665443
No 295
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.63 E-value=8.9 Score=34.63 Aligned_cols=59 Identities=15% Similarity=0.008 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 475 LGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 475 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
++.....|...|.+.+|.++.++++.++|-+...+..+...|...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44455668889999999999999999999999999999999999999888888887774
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.62 E-value=4.7 Score=34.12 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHH--HH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPD--SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFT--CL 446 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 446 (579)
.+..+..-|++.|+.+.|++.|.++.+....|. ...+-.+++.....+++..+.....++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 355566677777777777777777777544443 23455666667777777777777766654311111111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHhC
Q 047471 447 ID--LLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 447 ~~--~~~~~g~~~~A~~~~~~~ 466 (579)
.. .+...|++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11 223567888887777665
No 297
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.48 E-value=21 Score=37.74 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=14.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 511 LLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.|+.++...|+.++|...++++...
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555666666666666665555443
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.35 E-value=0.45 Score=43.34 Aligned_cols=97 Identities=10% Similarity=0.001 Sum_probs=70.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHhcC
Q 047471 410 LLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKFP-L-GQDPIVLGTLLSACRLRR 486 (579)
Q Consensus 410 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~ 486 (579)
-...|.++|.+++|+..|...+. +.| +..++..-..+|.+..++..|..-..... . ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35568899999999999998875 345 77888888889999999988877665542 1 111233444444444567
Q ss_pred CHHHHHHHHHHHHhcCCCCCccH
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPY 509 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~ 509 (579)
...+|.+-++.++++.|++.+.-
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHH
Confidence 88999999999999999965443
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.34 E-value=0.41 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.023 Sum_probs=15.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
+..++.+.|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666655554
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.17 E-value=0.23 Score=28.17 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
..+..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999998764
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.03 E-value=3.6 Score=39.66 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=40.4
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIG 491 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A 491 (579)
+...|+++.+.+.+....+ .+.....+..++++...+.|++++|...-..|- .-.++.+...........|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3445555555555554443 223334444555555555555555555544441 011222222222223334445555
Q ss_pred HHHHHHHHhcCCC
Q 047471 492 ERLAKQLFHLQPT 504 (579)
Q Consensus 492 ~~~~~~~~~~~p~ 504 (579)
.-.|++++.++|+
T Consensus 411 ~~~wk~~~~~~~~ 423 (831)
T PRK15180 411 YHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccCCh
Confidence 5555555555543
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.74 E-value=2.6 Score=35.58 Aligned_cols=92 Identities=11% Similarity=-0.047 Sum_probs=62.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHH
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKPD-----SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDL 449 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 449 (579)
.+-+...|++++|..-|.+.++. +++. ...|..-..++.+.+.++.|+.-..+.++. .| .......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHH
Confidence 34578889999999999999885 3332 223444455678888898888888777753 23 22333334567
Q ss_pred HHhcCChHHHHHHHHhC-CCCCC
Q 047471 450 LGRAGKLLEAEEYTKKF-PLGQD 471 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~-~~~p~ 471 (579)
|.+..++++|++-++++ ...|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 88888999999888887 33444
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.55 E-value=11 Score=33.04 Aligned_cols=202 Identities=14% Similarity=0.161 Sum_probs=92.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHH
Q 047471 270 WNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYA 349 (579)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 349 (579)
|.....+|....++++|-..+.+..+ +..-+...|. ..+.++.|.-+.+++.+. +--...|+-....|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 33444556666666666665555442 1122221111 112233333333333322 112233444455666
Q ss_pred hcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHhccCCHHHHH
Q 047471 350 KCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKAT---GIK--PDSVTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 350 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~--p~~~~~~~ll~~~~~~~~~~~a~ 424 (579)
.+|.++.|-..+++.-+ .....++++|+++|++...- +-+ .-...+...-..+.+...+.+|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 66666665555554311 12233455566655554431 100 01122333344455666666655
Q ss_pred HHHHHhHHH---h-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC---C---CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047471 425 AYFNSMEKT---Y-GISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF---P---LGQDPIVLGTLLSACRLRRDVVIGERL 494 (579)
Q Consensus 425 ~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~~~~~~~~~A~~~ 494 (579)
..+.+-... . ....--..|-..|-.+.-..++..|.+.++.- + ...+..+...|+.+| ..||.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 444332211 0 11111123444445555666778888877773 2 112456677777776 56777777665
Q ss_pred H
Q 047471 495 A 495 (579)
Q Consensus 495 ~ 495 (579)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.25 E-value=9.4 Score=31.56 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=53.0
Q ss_pred HhcCChHHHHHHHHccCCCChhhHHHHHH-----HHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHhccCCH
Q 047471 349 AKCGLISCSYKLFNEMLHRNVVSWNTIIA-----AHANHRLGGSALKLFEQMKATGIKPDSV-TFIGLLT--ACNHAGLV 420 (579)
Q Consensus 349 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~--~~~~~~~~ 420 (579)
...++.++|+.-|..+.+.+...|-.|.. ...+.|+...|...|++.-.....|-.. -...|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455556666665555444444433322 2445555566666666555432223222 1111111 13445555
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 421 KEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
+....-.+-+... +.+.-...-..|.-+-.+.|++.+|.++|..+
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 5555544444332 22222223334444445556666666655554
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.20 E-value=9.6 Score=31.62 Aligned_cols=42 Identities=10% Similarity=-0.042 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 047471 121 QIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF 162 (579)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (579)
++++.+.+.+++|+...+..+++.+.+.|++.....++..-.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 444555566677777777777777777776666665555433
No 306
>PRK12798 chemotaxis protein; Reviewed
Probab=89.79 E-value=20 Score=34.54 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=105.0
Q ss_pred cCChHHHHHHHHccC----CCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 047471 351 CGLISCSYKLFNEML----HRNVVSWNTIIAA-HANHRLGGSALKLFEQMKATGIKPDS----VTFIGLLTACNHAGLVK 421 (579)
Q Consensus 351 ~g~~~~A~~~~~~~~----~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~ 421 (579)
.|+..+|.+.|..+. .+....|-.|+.+ .....+..+|+++|+...- ..|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 467777777777763 2344455566555 4455677888888887765 34432 23334444567788888
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHH-HHHHHHhc---CChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047471 422 EGEAYFNSMEKTYGISPDIEHFTC-LIDLLGRA---GKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQ 497 (579)
Q Consensus 422 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~ 497 (579)
++..+-....++|...|-..-|.. +..++.+. ...+.-..++..|.-.-....|..+...-...|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888777777776666665544433 22233332 23444455666664223446777777777888888888888888
Q ss_pred HHhcCCCCCccHHHHHHHHHc-----CCChHHHHHHHHHH
Q 047471 498 LFHLQPTTTSPYVLLSNLYAS-----DGMWGDVAGARKML 532 (579)
Q Consensus 498 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~ 532 (579)
+..+... ...-...+..|.. ..+.+++.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 8886633 2222233333322 34455555554444
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.60 E-value=1.9 Score=36.62 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=53.0
Q ss_pred HhcCChHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCccHHHHHHHHHcCCChHH
Q 047471 451 GRAGKLLEAEEYTKKFPLGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT----TTSPYVLLSNLYASDGMWGD 524 (579)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 524 (579)
.+.|+ ++|.+.|-.+...| +.......+..|....|.++++.++-+++++.++ ||.++..|+.++.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34444 56777777765444 3344445555566678899999999999986632 57888999999999999887
Q ss_pred HH
Q 047471 525 VA 526 (579)
Q Consensus 525 A~ 526 (579)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.53 E-value=6.2 Score=33.39 Aligned_cols=63 Identities=8% Similarity=0.115 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHhCcCChHHHHHHHHHHHHc
Q 047471 269 SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD--FTFASILAACAGLASVQHGKQIHAHLIRM 332 (579)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (579)
.+..+...|++.|+.+.|++.|.++.+. ...|.. ..+..+++.+.-.+++..+.....++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666777788888888888888887665 444433 34456666777777777777777666543
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.52 E-value=11 Score=32.01 Aligned_cols=90 Identities=13% Similarity=-0.034 Sum_probs=66.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCC
Q 047471 446 LIDLLGRAGKLLEAEEYTKKFPLGQDPIVL-----GTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDG 520 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 520 (579)
+...+..+|++++|..-++.....|....+ ..|.+.....|.+++|...++...+.+=. +.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 456788999999999998875434433333 34455677889999999887765432211 234556789999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 047471 521 MWGDVAGARKMLKDSG 536 (579)
Q Consensus 521 ~~~~A~~~~~~~~~~~ 536 (579)
+-++|+.-|+...+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998775
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.50 E-value=2.2 Score=31.08 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=38.7
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 466 FPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 466 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
+...|++.+..+.+.+|.+.+|+..|+++++-+...-.++...|..+..
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 4578999999999999999999999999999877544434455655544
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.36 E-value=0.48 Score=25.06 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=17.4
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHH
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARK 530 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~ 530 (579)
.....++.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677778888888888877665
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.27 E-value=0.87 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=12.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 475 LGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 475 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
++.+...+...|++++|..+++++++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34444444445555555555444443
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.14 E-value=0.87 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666666655
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.09 E-value=1.2 Score=40.73 Aligned_cols=93 Identities=12% Similarity=0.050 Sum_probs=64.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG 454 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (579)
.+-|.+.|.+++|+..|.+... +.| |.+++..-..+|.+...+..|..-...++.- ...-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999887 566 8899988889999999998888777766542 0111223333333334456
Q ss_pred ChHHHHHHHHhC-CCCCCh
Q 047471 455 KLLEAEEYTKKF-PLGQDP 472 (579)
Q Consensus 455 ~~~~A~~~~~~~-~~~p~~ 472 (579)
...+|.+-++.. ..+|..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666666655554 456663
No 315
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.97 E-value=14 Score=31.83 Aligned_cols=176 Identities=13% Similarity=-0.011 Sum_probs=94.1
Q ss_pred CChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChh-hHHHHHH--HHHhcCChHHHHHHHH
Q 047471 317 ASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVV-SWNTIIA--AHANHRLGGSALKLFE 393 (579)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~ 393 (579)
|-+..|.-=|.+..... |.-+.+||-+.-.+...|+++.|.+.|+...+-|+. -|..+=. ++--.|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 33333333343333332 334577888888888889999999999988665443 2322222 2334588888887777
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHH-HHHHhcCChHHHHHHHHhCCCCC
Q 047471 394 QMKATGIKPDSV--TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLI-DLLGRAGKLLEAEEYTKKFPLGQ 470 (579)
Q Consensus 394 ~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~p 470 (579)
..-..+.. |+. .|..+. ...-++.+|..-+.+-.+ + .|..-|...+ ..|...=..+.+.+-..... ..
T Consensus 158 ~fYQ~D~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a-~~ 228 (297)
T COG4785 158 AFYQDDPN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADA-TD 228 (297)
T ss_pred HHHhcCCC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhc-cc
Confidence 66664322 322 222222 234466666654443333 2 2333443322 22222222222222222221 11
Q ss_pred C-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 471 D-------PIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 471 ~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
+ ..++--+..-+...|+.++|..+|+-++..+
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1 2455666677778899999999998888755
No 316
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.77 E-value=2.8 Score=30.97 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=36.2
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 466 FPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 466 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
+...|++.+..+.+.+|.+.+|+..|+++++-+...-.+....|..++.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 4578999999999999999999999999999988766554546666654
No 317
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.41 E-value=18 Score=32.25 Aligned_cols=61 Identities=15% Similarity=-0.041 Sum_probs=36.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 446 LIDLLGRAGKLLEAEEYTKKFP-LGQ----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
+.+-|.+.|.+..|..-+++|. .-| ....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4556677777777776666662 111 123455566677777877777776555554556654
No 318
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.95 E-value=22 Score=32.81 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 372 WNTIIAAHANHRLGG---SALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
...++.+|...+..+ +|..+++.+... -|+ +..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 444555555554433 344455555432 122 333434455555566677777777777663
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.82 E-value=29 Score=34.11 Aligned_cols=241 Identities=10% Similarity=0.051 Sum_probs=129.8
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcc-C-CCCcchHhHHHHHHHhcCCh
Q 047471 283 YEKGLSVFKEMSNDHGVRPDDFTFASILAACAGL------ASVQHGKQIHAHLIRMR-L-NQDVGVGNALVNMYAKCGLI 354 (579)
Q Consensus 283 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~ 354 (579)
.+...++|++..+. -|+...+...|..|... ..+.....+++...+.+ . +.....|..+.-++......
T Consensus 298 ~s~~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~ 374 (568)
T KOG2396|consen 298 ESRCCAVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA 374 (568)
T ss_pred HHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH
Confidence 34445677776643 45555555555555322 13334444455444332 2 23345566666666655543
Q ss_pred H-HHHHHHHccCCCChhhHHHHHHHHHhc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHH--HHHH
Q 047471 355 S-CSYKLFNEMLHRNVVSWNTIIAAHANH-RLGGSA-LKLFEQMKATGIKPDSVTFIGLLTACNHAGL-VKEGE--AYFN 428 (579)
Q Consensus 355 ~-~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~--~~~~ 428 (579)
. -|..+..+....+...|-.-+...... .+++-- .+.+......-..+-...++... .++ .+... .++.
T Consensus 375 r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 375 REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 3 344444466666766666555554422 122221 22233333321122223333322 222 22211 1222
Q ss_pred HhHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhcCC
Q 047471 429 SMEKTYGISPDIEHF-TCLIDLLGRAGKLLEAEEYTKKFP-L-GQDPIVLGTLLSAC--RLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 429 ~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p 503 (579)
.+.. ...|+..++ +.+.+-+.+.|-..+|...+.++. . +|+...+..++..- ...-+...+..+++.+.....
T Consensus 450 a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 2222 233444443 567777788888999999988873 2 34566676666543 234458888889998888665
Q ss_pred CCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 504 TTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 504 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.++..|......-...|..+.+-.++.+..
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 778888887777778888777766665554
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.74 E-value=1.4 Score=28.30 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 476 GTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 476 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
-.+.-++.+.|++++|.+..+.+++.+|+|...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 345567889999999999999999999998543
No 321
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.58 E-value=0.71 Score=26.38 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=12.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHH
Q 047471 437 SPDIEHFTCLIDLLGRAGKLLEAE 460 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~ 460 (579)
|-+...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
No 322
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.58 E-value=40 Score=35.41 Aligned_cols=49 Identities=10% Similarity=-0.098 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
..++.+.+...+..+-+.....+...+-++.++...|+.++|..+|+.+
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444433222223334444444444444444444444443
No 323
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.57 E-value=1.3 Score=24.02 Aligned_cols=29 Identities=21% Similarity=0.068 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 475 LGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 475 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
+..+...+...|+++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444445555555555555555555544
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.55 E-value=5.3 Score=36.29 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=45.8
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKA-----TGIKPDSVTFIGLL 411 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ll 411 (579)
++..++..+...|+.+.+...++++.. -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 345566666667777777777666643 2445677777777777777777777766654 45666655544443
Q ss_pred HH
Q 047471 412 TA 413 (579)
Q Consensus 412 ~~ 413 (579)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.09 E-value=0.53 Score=26.36 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=25.4
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 508 PYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
++..++.++.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 46788999999999999999999997653
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.03 E-value=1.1 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=25.6
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988653
No 327
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.00 E-value=33 Score=33.85 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhc
Q 047471 301 PDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKC 351 (579)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 351 (579)
.|.....+++..+.....+.-++.+..++...| .+...|..++++|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en 112 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN 112 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc
Confidence 344445555555555555555555555555443 2333344444444444
No 328
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.61 E-value=24 Score=36.50 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=65.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSVT---FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGK 455 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (579)
|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.+ .++...+ +... |+ .|-..+++.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~E----lq~I-gm--------kLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLE----LQQI-GM--------KLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHH----HHHH-HH--------HHHHHhhccch
Confidence 4445566778888888777 6676543 3333332211 1222221 1111 11 23455678898
Q ss_pred hHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHH
Q 047471 456 LLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLL 512 (579)
Q Consensus 456 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 512 (579)
+++..++|+-. ..+.+-...+|+.+|.+..+.+.++.|+....-..+
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHH
Confidence 88888877653 245566678999999999999999999865443333
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.59 E-value=45 Score=34.94 Aligned_cols=44 Identities=23% Similarity=0.085 Sum_probs=30.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHcccC--CCHhhHHHHHHHHhcc
Q 047471 70 SWSAMISGHHQAGEHLLALEFFSQMHLL--PNEYIFASAISACAGI 113 (579)
Q Consensus 70 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--p~~~~~~~ll~~~~~~ 113 (579)
..-.+|--+.|.|+.++|.++..+.... .....|...+..+...
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3345666788999999999998666554 4456777777777654
No 330
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.57 E-value=4 Score=30.20 Aligned_cols=60 Identities=10% Similarity=0.208 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 387 SALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 387 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
+..+-++.+....+-|++......+.+|.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4556666666777889999999999999999999999999999887644 33336766654
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.07 E-value=1.4 Score=35.83 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=55.8
Q ss_pred HHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHH
Q 047471 206 GGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEK 285 (579)
Q Consensus 206 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 285 (579)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566666777777777777777766666777888888888888777777777763332 333455566666666666
Q ss_pred HHHHHHHh
Q 047471 286 GLSVFKEM 293 (579)
Q Consensus 286 a~~~~~~m 293 (579)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666655
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.77 E-value=7.6 Score=37.59 Aligned_cols=131 Identities=15% Similarity=0.022 Sum_probs=79.6
Q ss_pred HHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047471 348 YAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 424 (579)
-...|++..|.+-+.... ..++.........+...|+++.+...+...... +.....+..++++...+.|++++|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 334577766655444331 122332222333456778999998888776654 4456678888888889999999999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHH
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSA 481 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 481 (579)
..-..|... .+ .+........-..-..|-++++.-.+++. .+ +|...-|...+..
T Consensus 378 s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 378 STAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 888888764 22 23333333333334567788888888876 22 3344445444444
No 333
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.61 E-value=2.3 Score=31.08 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=18.1
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 495 AKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 495 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
+++.++.+|+|......++..+...|++++|++.+-.+.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444455555555555555555555555554444443
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=17 Score=36.45 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=67.3
Q ss_pred HHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHH
Q 047471 245 LYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQ 324 (579)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 324 (579)
...+.|+++.|.++..+.. +..-|..|..+....++...|.+.|.+... |..|+-.+...|+.+....
T Consensus 646 lal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHH
Confidence 4455677777776655443 556688889999999999999888877653 4556666667777776666
Q ss_pred HHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc
Q 047471 325 IHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM 364 (579)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 364 (579)
+-....+.|. . |....+|...|+++++.+++.+-
T Consensus 714 la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 6666665552 1 23334556667777766666554
No 335
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.47 E-value=12 Score=27.42 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 384 LGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
|.-++.+-++.+....+-|++......+++|.+.+|+..|.++++.+..+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445666777777778889999999999999999999999999998876423 24445665553
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.29 E-value=26 Score=35.28 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
-|..|.++....|++..|.+-|.+.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhh
Confidence 3455555555555555555544443
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.04 E-value=9.8 Score=28.07 Aligned_cols=87 Identities=17% Similarity=0.060 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHH
Q 047471 115 SLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLR 194 (579)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 194 (579)
..++|.-|-+.+...+-. ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|..+....-+..|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 456666666666554422 12222223345678999999999999999999998876543 467777777777777877
Q ss_pred CCCCCCcccHH
Q 047471 195 QGLLPDRFSFA 205 (579)
Q Consensus 195 ~g~~p~~~~~~ 205 (579)
.| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 35444443
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.80 E-value=52 Score=34.02 Aligned_cols=246 Identities=11% Similarity=0.063 Sum_probs=124.0
Q ss_pred HHhCCChHHHHHHHHHhhh-------CCCCCCCHHHHHHHHHHHhCc----C-ChHHHHHHHHHHHHccCCCCcchHhHH
Q 047471 277 CSHCADYEKGLSVFKEMSN-------DHGVRPDDFTFASILAACAGL----A-SVQHGKQIHAHLIRMRLNQDVGVGNAL 344 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~-------~~~~~p~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 344 (579)
+....|.+.|+.+|+.+.. . |.++ ....+..+|.+. . +.+.|..++....+.| .|+.... +
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~-~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--l 331 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATK-GLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYL--L 331 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhh-cCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHH--H
Confidence 3345567777777766654 3 3222 333444444432 2 5666777777777766 2333222 2
Q ss_pred HHHHHhc---CChHHHHHHHHccCC-CChhhHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047471 345 VNMYAKC---GLISCSYKLFNEMLH-RNVVSWNTIIAAHA----NHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH 416 (579)
Q Consensus 345 i~~~~~~---g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 416 (579)
..+|... .+...|.++|...-+ -....+-.+..+|. ...+...|..++++..+.| .|....-...+..+..
T Consensus 332 g~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~ 410 (552)
T KOG1550|consen 332 GVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV 410 (552)
T ss_pred HHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc
Confidence 2223222 345677777777632 23333333333332 2346677888888888776 3332222233333444
Q ss_pred cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH---Hh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 047471 417 AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL---GR----AGKLLEAEEYTKKFPLGQDPIVLGTLLSACRL----R 485 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 485 (579)
+.++.+.-.+..+.+. +.+.....-..+.... .. ..+.+.+...+.+...+-++.....+...+.. .
T Consensus 411 -~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 411 -GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred -ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCC
Confidence 6666665555555443 3322111111111111 11 12445555666665444455555555444432 2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC-C--ChHHHHHHHHHHHhC
Q 047471 486 RDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD-G--MWGDVAGARKMLKDS 535 (579)
Q Consensus 486 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~ 535 (579)
.+.+.|...+.++.... +.....++..+... | .+..|.++++...+.
T Consensus 489 ~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred CChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 35777777777777666 55566666666552 1 156777777776543
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.73 E-value=4.9 Score=34.53 Aligned_cols=73 Identities=18% Similarity=0.017 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh-CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHHH
Q 047471 443 FTCLIDLLGRAGKLLEAEEYTKK-FPLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT---SPYVLLSNL 515 (579)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~ 515 (579)
.+..+..+.+.+.+.+|+...+. ++.+| |...-..++..++..|++++|..-++-+-++.|+.. +.|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456677888899999887655 45566 566778888899999999999999999999888753 345555554
No 340
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=11 Score=34.36 Aligned_cols=100 Identities=17% Similarity=0.071 Sum_probs=66.6
Q ss_pred ccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC-C------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047471 332 MRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH-R------NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDS 404 (579)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 404 (579)
.|.+....+...++..-....+++.++..+=++.+ | +... .+.+..+. .-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 34455555555555555556677777776665532 1 1111 12222222 33567888888888888999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
++++.+++.+.+.+++.+|..+.-.+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999888888777664
No 341
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.51 E-value=30 Score=30.99 Aligned_cols=239 Identities=16% Similarity=0.210 Sum_probs=131.0
Q ss_pred CChhHHHHHHHhcCC----CCc---chHHHHHHHHHhCCChHHHHHHHHHhhhCC--CC--CCCHHHHHHHHHHHhCcCC
Q 047471 250 NLIGEAEKAFRLIEE----KDL---ISWNTFIAACSHCADYEKGLSVFKEMSNDH--GV--RPDDFTFASILAACAGLAS 318 (579)
Q Consensus 250 ~~~~~a~~~~~~~~~----~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~--~p~~~~~~~ll~~~~~~~~ 318 (579)
..+++|..-|+.+.+ ... .+...++....+.+++++.+..|.++.... .+ .-+.-..+.++.-.....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345666666666543 111 234456777788888888887777765320 11 1233456677766666666
Q ss_pred hHHHHHHHHHHHHc-----cCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC------------C---ChhhHHHHHHH
Q 047471 319 VQHGKQIHAHLIRM-----RLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH------------R---NVVSWNTIIAA 378 (579)
Q Consensus 319 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~---~~~~~~~l~~~ 378 (579)
.+....+++.-.+. +-..=..+-.-|...|...+.+.+-.++++++.+ . -...|..-|+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666665543321 1011112334567777777888777777777621 1 12357777888
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHhHHHh---CCCCC--hhHHHHHH
Q 047471 379 HANHRLGGSALKLFEQMKAT-GIKPDSVTFIGLLTAC-----NHAGLVKEGEAYFNSMEKTY---GISPD--IEHFTCLI 447 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~ 447 (579)
|....+-.....++++...- ..-|.+... .+|+-| .+.|.+++|..-|-++-+.+ |.+.- .--|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888888888888877652 223444444 344444 35678887765444443332 22111 12244556
Q ss_pred HHHHhcC----ChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047471 448 DLLGRAG----KLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERL 494 (579)
Q Consensus 448 ~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 494 (579)
..+.+.| +..+|.- ....|.......++.+|.. ++..+-.++
T Consensus 280 NMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~I 325 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERI 325 (440)
T ss_pred HHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 6666665 1122211 1233445566777877744 344443333
No 342
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.46 E-value=6.7 Score=35.75 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=71.7
Q ss_pred HhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC-------CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCC
Q 047471 128 KFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE-------PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPD 200 (579)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 200 (579)
..|.+.+..+...++..-....+++.+...+-++.. ++...+ ++++.+. .-++++++.++..=++-|+.||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 345555555556666666667778888777654432 222222 2334333 4457799999999899999999
Q ss_pred cccHHHHHHHhcccCcccchhHHHHHHHHhC
Q 047471 201 RFSFAGGLEICSVSNDLRKGMILHCLTVKCK 231 (579)
Q Consensus 201 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 231 (579)
.+++..+|+.+.+.+++..|.++.-.|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877776654
No 343
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.20 E-value=59 Score=34.17 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHhcC---CCCC-ccH-----HHHHHHHHcCCChHHHHHHHHHHH
Q 047471 485 RRDVVIGERLAKQLFHLQ---PTTT-SPY-----VLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 485 ~~~~~~A~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.|+..+.......+...- |+.. ..| ..+...+...|+.++|........
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666665555433 2222 233 245556888899999888877654
No 344
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.04 E-value=2.2 Score=26.10 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 510 VLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
..|+.+|...|+.+.|+++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999887544
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.64 E-value=1.7 Score=25.90 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=21.6
Q ss_pred cchHHHHHHHhhhhcchhHHHHHHHHHHH
Q 047471 2 AKSISSLLHHCSKTKALQQGISLHAAVLK 30 (579)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 30 (579)
+.+++.|...|..+|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45777888888888888888888887765
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.00 E-value=17 Score=26.95 Aligned_cols=79 Identities=13% Similarity=0.079 Sum_probs=54.8
Q ss_pred cchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcc
Q 047471 16 KALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMH 95 (579)
Q Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 95 (579)
-..++|..+-+.+...+.. ...+--+-+..+...|+|++|..+.+...-||...|-.|-. .+.|-.+++..-+.++.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 3567888888887776532 33333344567788999999999999998899988877744 45666666666555554
Q ss_pred cC
Q 047471 96 LL 97 (579)
Q Consensus 96 ~~ 97 (579)
..
T Consensus 96 ~s 97 (115)
T TIGR02508 96 AS 97 (115)
T ss_pred hC
Confidence 44
No 347
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=4.3 Score=35.49 Aligned_cols=56 Identities=5% Similarity=-0.021 Sum_probs=40.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
..+...|++-++++....++...|.|..+|+.-+.+.+..=+.++|..-+....+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34455677777777777777777777777777777777777777777777766544
No 348
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.44 E-value=0.97 Score=41.45 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=29.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
++.+.+....|++=+..+++++|++..-|-.-+.+....|+|++|...+....+.+..
T Consensus 157 v~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 157 VFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred eeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 3444444455555555555555555555555555555555555555555555444443
No 349
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.41 E-value=23 Score=32.26 Aligned_cols=31 Identities=23% Similarity=0.138 Sum_probs=19.7
Q ss_pred ChhHHhHHHHHHHhcCChhHHHHHHHhcCCC
Q 047471 235 NPFVGNTIMALYSKFNLIGEAEKAFRLIEEK 265 (579)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 265 (579)
++.....+...|.+.|++.+|+..|-.-.++
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~ 119 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDP 119 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 5566677778888888888887766444433
No 350
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.24 E-value=2.9 Score=23.07 Aligned_cols=30 Identities=7% Similarity=0.233 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 486 RDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 486 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
|+.+.+..+|+++++..|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999888888887776654
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.90 E-value=2.5 Score=35.12 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=36.3
Q ss_pred CCCCh-hhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC-CChHHHHHHHHHHHh
Q 047471 468 LGQDP-IVLGTLLSACRLRR-----------DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD-GMWGDVAGARKMLKD 534 (579)
Q Consensus 468 ~~p~~-~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 534 (579)
++|+- .++..+..++...+ .+++|...|+++...+|+|. .|.+. +-..+|-++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--------~Y~ksLe~~~kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE--------LYRKSLEMAAKAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H--------HHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHhhHHHHHHHHH
Confidence 45643 55666665554322 36777778888888889872 44442 445667777777776
Q ss_pred CCCC
Q 047471 535 SGLK 538 (579)
Q Consensus 535 ~~~~ 538 (579)
.+..
T Consensus 136 ~~~~ 139 (186)
T PF06552_consen 136 QGLG 139 (186)
T ss_dssp SSS-
T ss_pred HHhh
Confidence 6543
No 352
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.82 E-value=48 Score=30.79 Aligned_cols=48 Identities=15% Similarity=-0.006 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCC---------------ChHHHHHHHHHHHhCCC
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDG---------------MWGDVAGARKMLKDSGL 537 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 537 (579)
|.++|...|+++.+.+. ......+. .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 56666666666666655 33344444 444333 56666666666655544
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.80 E-value=28 Score=28.12 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=35.8
Q ss_pred ccCCHHHHHHHHHHhHHHhCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHHHh
Q 047471 416 HAGLVKEGEAYFNSMEKTYGISPDIEHFT-CLIDLLGRAGKLLEAEEYTKKFPLGQ-DPIVLGTLLSACRL 484 (579)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~ 484 (579)
..++.+++..+++.+. .+.|+..-.. .-...+...|++.+|..+|+++...+ ....-..|...|..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3667777777777775 3344432221 12344567777777777777774333 32333344444433
No 354
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.59 E-value=91 Score=33.83 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 047471 269 SWNTFIAACSHCADYEKGLSVFKEMSND 296 (579)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 296 (579)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788888999999999999999988763
No 355
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.53 E-value=50 Score=30.77 Aligned_cols=125 Identities=14% Similarity=0.222 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhC--c----CChHHHHHHHHHHHHccC---CCCcchHhHHHHHHHhcCCh
Q 047471 284 EKGLSVFKEMSNDHGVRPDDFTFASILAACAG--L----ASVQHGKQIHAHLIRMRL---NQDVGVGNALVNMYAKCGLI 354 (579)
Q Consensus 284 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 354 (579)
++.+.+++.|.+. |..-+..+|.+....... . .....+..+++.|++... .++-..+..++.. ..+++
T Consensus 79 ~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 79 KEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 3445566666666 666666665543332222 1 134556667777766532 2222333333222 22222
Q ss_pred ----HHHHHHHHccC-----CCChhhHHHHHHHHHhcC-C--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047471 355 ----SCSYKLFNEML-----HRNVVSWNTIIAAHANHR-L--GGSALKLFEQMKATGIKPDSVTFIGLL 411 (579)
Q Consensus 355 ----~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~-~--~~~a~~~~~~m~~~~~~p~~~~~~~ll 411 (579)
+.++.+|+.+. +.|..-+.+-+-++.... . ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 33344444431 222222222222222211 1 457888999999999998877765543
No 356
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.27 E-value=8.2 Score=30.38 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHH---HHHHHhC-C-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 437 SPDIEHFTCLIDLLGRAGKLLEA---EEYTKKF-P-LGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~-~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
.++..+.-.+..++.+..+.++. +.+++.+ + ..| +.....-|.-++.+.++++.++++++.+++.+|+|+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 56677777788888877765544 4466665 2 233 2244455666788889999999999998888888753
No 357
>PF13934 ELYS: Nuclear pore complex assembly
Probab=79.36 E-value=34 Score=30.38 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=51.7
Q ss_pred HHHHHHHc--cCChhHHHHHhcccCCCCc--ccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHHHHHHhccCCh
Q 047471 42 HVLNLYAK--CGKMILARKVFDEMSERNL--VSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASAISACAGIQSL 116 (579)
Q Consensus 42 ~l~~~~~~--~g~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~ 116 (579)
..++++.. .+++++|.+.+-. |+. .....++.++...|+.+.|+.+++.+... .+......++.. ...+.+
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSH---PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCC---CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Confidence 34444433 3666777666633 322 22235777777778888888888777654 222233333333 445677
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 047471 117 VKGQQIHAYSLKFGYASISFVGNSLISMYM 146 (579)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (579)
.+|..+.+...... ....+..++..+.
T Consensus 157 ~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 157 TEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 77766555443311 1234555555544
No 358
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.08 E-value=12 Score=32.82 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhcCCHH-------HHHHHHHHHHhcC--CCC----CccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 474 VLGTLLSACRLRRDVV-------IGERLAKQLFHLQ--PTT----TSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
.+..+.+.|...|+.+ .|.+.|+++.+.. |.. ..+...++.+..+.|+.++|.+.+.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3444555566666644 3444555555433 222 34677888999999999999999999876543
No 359
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.94 E-value=90 Score=32.82 Aligned_cols=100 Identities=7% Similarity=-0.109 Sum_probs=56.2
Q ss_pred HHHHHhcCChHHHHHHHHHcccC-C---CHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 047471 75 ISGHHQAGEHLLALEFFSQMHLL-P---NEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGY 150 (579)
Q Consensus 75 ~~~~~~~g~~~~a~~~~~~~~~~-p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (579)
++.+.+.+.+++|+++.+..... | ........+..+...|+.+.|-...-.|... +..-|.--+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 66788889999999998887766 3 2234555566666666666666555555431 23334444444444444
Q ss_pred hhHHHHHhccCCC-CCcchHHHHHHHHHh
Q 047471 151 SSDALLVYGEAFE-PNLVSFNALIAGFVE 178 (579)
Q Consensus 151 ~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 178 (579)
......++-..+. .+...|..++..++.
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4444333332222 234456666655554
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.52 E-value=23 Score=30.32 Aligned_cols=73 Identities=14% Similarity=0.004 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh--CCCCChhHHHHHHHHHHhcCChHHH
Q 047471 386 GSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY--GISPDIEHFTCLIDLLGRAGKLLEA 459 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 459 (579)
+.|.+.|-.+...+.--++.....|...|. ..|.+++..++.+..+-. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 556666666655544434444434433333 456666666666655432 1134555666666666666666555
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.28 E-value=25 Score=27.85 Aligned_cols=62 Identities=16% Similarity=-0.000 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCC-CccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 473 IVLGTLLSACRLRR---DVVIGERLAKQLFH-LQPTT-TSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 473 ~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.+-..+.+++.+.. |..+.+.+++...+ -.|.. ....+.|+-.+.+.|++++++++++.+.+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33334444444332 23444445555554 22221 22333444455555555555555555443
No 362
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.78 E-value=77 Score=31.42 Aligned_cols=102 Identities=8% Similarity=0.049 Sum_probs=57.3
Q ss_pred HHHccCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHHhCC
Q 047471 360 LFNEMLHRNVVSW-NTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC--NHAGLVKEGEAYFNSMEKTYGI 436 (579)
Q Consensus 360 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~ 436 (579)
.+..+..++..++ +.++.-+.+.|-..+|...+..+... .+|+...|..++..- ...-++.-+..+++.+...+|
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg- 527 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG- 527 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-
Confidence 3334444555443 44555666667777777777777764 345666666665542 112236666777777777666
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047471 437 SPDIEHFTCLIDLLGRAGKLLEAEEYTK 464 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (579)
.|+..|-..+..-...|..+.+-.++.
T Consensus 528 -~d~~lw~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 528 -ADSDLWMDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred -CChHHHHHHHHhhccCCCcccccHHHH
Confidence 445555544444445555554444433
No 363
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.71 E-value=57 Score=29.85 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHc-cCCCCcchHhHHHHHHHhcCChHHHHHHHH
Q 047471 298 GVRPDDFTFASILAACAGLASVQHGKQIHAHLIRM-RLNQDVGVGNALVNMYAKCGLISCSYKLFN 362 (579)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 362 (579)
|..++..+...++..++..+++....+++...... +...|...|..+|+.....|+..-..++.+
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 34445555555555555555555555555544433 333444444444444444444444444333
No 364
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.65 E-value=98 Score=32.03 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=98.5
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHH-HHHHHH-HhCcCChHHHHHHHHHHHH-------ccCCCCcchHhHHHHHHHhcC-
Q 047471 283 YEKGLSVFKEMSNDHGVRPDDFTF-ASILAA-CAGLASVQHGKQIHAHLIR-------MRLNQDVGVGNALVNMYAKCG- 352 (579)
Q Consensus 283 ~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g- 352 (579)
...|.++++..... |..-..... .....+ .....+.+.|..+++.+.+ .+ .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~-g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL-GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhh-cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788888877665 422111111 112222 4466799999999998877 44 4445567778887753
Q ss_pred ----ChHHHHHHHHccCC-CChhhHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCH
Q 047471 353 ----LISCSYKLFNEMLH-RNVVSWNTIIAAHANH---RLGGSALKLFEQMKATGIKPDSVTFIGLLTAC----NHAGLV 420 (579)
Q Consensus 353 ----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~ 420 (579)
+...|..+|...-. .++..--.+...+... .+...|.++|......|..+ .+..+..++ .-..+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~---A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL---AIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH---HHHHHHHHHHhCCCcCCCH
Confidence 56678888887732 3333333344444332 46789999999999887432 222222222 133478
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047471 421 KEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEY 462 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (579)
..|..++.+..++ | .|....-...+..+.. ++.+.+.-.
T Consensus 381 ~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~ 419 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALAL 419 (552)
T ss_pred HHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHH
Confidence 8999999999886 5 3332222233334444 555555443
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.48 E-value=8.7 Score=38.27 Aligned_cols=100 Identities=15% Similarity=0.076 Sum_probs=69.1
Q ss_pred hccCCHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCCHHH
Q 047471 415 NHAGLVKEGEAYFNSMEKTYGISPD--IEHFTCLIDLLGRAGKLLEAEEYTKKF-P-LGQDPIVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 415 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~ 490 (579)
.-.|+...|.+.+..+.. ..|- -...-.|...+.+.|-..+|-.++... . ..-.+.++..+..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 346778888887776653 2332 223445667777777777787766553 2 23355677777888888888999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 491 GERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
|++.|+++.+++|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999988887777665443
No 366
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.42 E-value=1.3e+02 Score=33.42 Aligned_cols=144 Identities=14% Similarity=0.090 Sum_probs=81.4
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGL 419 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 419 (579)
.|.-.++.--+.|.+.+|..++..-.+.-...|.+..+-+...+.+++|.-.|+..-+ ..-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 3344444455566666666666544444444555555666667777777777665432 2234566777788
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047471 420 VKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLF 499 (579)
Q Consensus 420 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 499 (579)
|.+|..+..++.. +-.--..+-..|+..+...+++-+|.++..+.-..|.. .+..+++...+++|.++.....
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 8888877776643 11111122255667777788888888877776423321 2233444445555555544443
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.89 E-value=64 Score=29.49 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
+++...+.|..+|.+.+|.++.++. ...| +...+..++..+...||--.+...++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667888999999999999987 4444 677888899999999998888777666543
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=75.82 E-value=61 Score=32.02 Aligned_cols=143 Identities=10% Similarity=0.043 Sum_probs=72.3
Q ss_pred HhhhhcchhHHHHHHHHHHHhcCCCCchh--HHHHHHHHHccCChhHHHHHhcccCCCCc---ccHHHHHHHHHhcCChH
Q 047471 11 HCSKTKALQQGISLHAAVLKMGIQPDVIV--SNHVLNLYAKCGKMILARKVFDEMSERNL---VSWSAMISGHHQAGEHL 85 (579)
Q Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 85 (579)
.-...|+.+ +++.+.+.|..|+... ..+.+...+..|+.+-+.-+++.-..++. ... ..+...+..|+.+
T Consensus 8 ~A~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g~~~ 82 (413)
T PHA02875 8 DAILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEGDVK 82 (413)
T ss_pred HHHHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCCCHH
Confidence 344556664 4555556787665532 34556666778888777666655433322 122 2344556778887
Q ss_pred HHHHHHHHcccCCCH--hhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCChhHHHHHhccC
Q 047471 86 LALEFFSQMHLLPNE--YIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFV--GNSLISMYMKVGYSSDALLVYGEA 161 (579)
Q Consensus 86 ~a~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~ 161 (579)
.+..+++.-....+. ..-.+.+...+..|+. ++.+.+++.|..|+... -.+.+...+..|+.+-+..+++..
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 776666543221110 0111223333444544 34445555565554321 122334445566666666666554
Q ss_pred C
Q 047471 162 F 162 (579)
Q Consensus 162 ~ 162 (579)
.
T Consensus 159 ~ 159 (413)
T PHA02875 159 A 159 (413)
T ss_pred C
Confidence 3
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.70 E-value=4.6 Score=21.59 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999887653
No 370
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.61 E-value=35 Score=31.54 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 047471 490 IGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 490 ~A~~~~~~~~~~~p~~~~ 507 (579)
.|.+.+.++.+.+|.-|.
T Consensus 380 ~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHHHHHHhhcCCCCcH
Confidence 466777788888876443
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.48 E-value=1.2e+02 Score=32.52 Aligned_cols=216 Identities=13% Similarity=0.025 Sum_probs=100.2
Q ss_pred HHhcCChhHHHHHHHhcCC----CCc-------chHHHHHH-HHHhCCChHHHHHHHHHhhhCC---CCCCCHHHHHHHH
Q 047471 246 YSKFNLIGEAEKAFRLIEE----KDL-------ISWNTFIA-ACSHCADYEKGLSVFKEMSNDH---GVRPDDFTFASIL 310 (579)
Q Consensus 246 ~~~~~~~~~a~~~~~~~~~----~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~---~~~p~~~~~~~ll 310 (579)
.....++++|..++.++.. ++. ..|+.+-. .....|+++.|.++-+...... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3445667777776665442 211 13444322 2345577777777776665431 1222334455555
Q ss_pred HHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHH-----HHHHhcCChHHH--HHHHHcc-----CCC-----ChhhHH
Q 047471 311 AACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALV-----NMYAKCGLISCS--YKLFNEM-----LHR-----NVVSWN 373 (579)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A--~~~~~~~-----~~~-----~~~~~~ 373 (579)
.+..-.|++++|..+.....+..-.-+...+.... ..+...|+...+ ...|... .+. -...+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66666778888887777666553333333332222 223445532222 2222222 111 112233
Q ss_pred HHHHHHHhcCChHHHHHHHHH----HHHCCCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hhHH
Q 047471 374 TIIAAHANHRLGGSALKLFEQ----MKATGIKPDSVTF--IGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IEHF 443 (579)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 443 (579)
.+..++.+ .+.+..-... .......|-...+ ..++......|+.++|...++++..- ...++ -...
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~ 660 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHH
Confidence 33333333 2222222222 2221122222222 25566667778888888877777654 22221 1111
Q ss_pred HHHHHH--HHhcCChHHHHHHHHh
Q 047471 444 TCLIDL--LGRAGKLLEAEEYTKK 465 (579)
Q Consensus 444 ~~l~~~--~~~~g~~~~A~~~~~~ 465 (579)
...+.. ....|+.+++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 122222 2356777777766655
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.26 E-value=11 Score=27.87 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=35.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCC---------CccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 482 CRLRRDVVIGERLAKQLFHLQPTT---------TSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..+.||+..|.+.+.+..+....+ ......++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346778888877777776633221 12334567778888999988888888754
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.94 E-value=7.5 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=13.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 047471 375 IIAAHANHRLGGSALKLFEQMKAT 398 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~ 398 (579)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666666655543
No 374
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.48 E-value=9.4 Score=33.42 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=68.3
Q ss_pred HHhccCCHHHHHHHHHHhHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHH-HHHHhcCCHH
Q 047471 413 ACNHAGLVKEGEAYFNSMEKTYGISPDIEH-FTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLGTLL-SACRLRRDVV 489 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~ 489 (579)
.|.....++.|...|.+.+. +.|+..+ |..=+-++.+..+++.+.+-.++. .+.|+..--...+ ........++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 36666778888887777764 4566644 445566677778888777655543 5566654444333 3455667788
Q ss_pred HHHHHHHHHHhcC---CCC--CccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 490 IGERLAKQLFHLQ---PTT--TSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 490 ~A~~~~~~~~~~~---p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
+|+..++++..+. |.+ ..+...|..+--..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888888886533 222 233444444333333334445555543
No 375
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=73.14 E-value=19 Score=25.86 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHH
Q 047471 20 QGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLAL 88 (579)
Q Consensus 20 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 88 (579)
.+.++++.+.+.|+ -+..-...+-..-...|+.+.|..++..++ +.+..|..++.++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 35577888888775 333333333222235688999999999998 88888899999988888766554
No 376
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.36 E-value=1.7e+02 Score=32.67 Aligned_cols=258 Identities=8% Similarity=-0.108 Sum_probs=139.9
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHcc
Q 047471 254 EAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMR 333 (579)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (579)
....+...+.++++..-...+..+.+.+..+ +...+...... ++...-...+.++.+.+........+..+..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D----~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~-- 694 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD----GAAAVRRAAAEGLRELVEVLPPAPALRDHLG-- 694 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC----CCHHHHHHHHHHHHHHHhccCchHHHHHHhc--
Confidence 3345556666777777777777777766533 44555555433 3333333444444333221111222323332
Q ss_pred CCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047471 334 LNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA 413 (579)
Q Consensus 334 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 413 (579)
.+|+.+-...+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +..+.. .++...-...+.+
T Consensus 695 -~~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~a 765 (897)
T PRK13800 695 -SPDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKG 765 (897)
T ss_pred -CCCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHH
Confidence 245555555666665543211 2334455566777777777777776655432 222222 3455555555556
Q ss_pred HhccCCHHH-HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047471 414 CNHAGLVKE-GEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGE 492 (579)
Q Consensus 414 ~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 492 (579)
+...+..+. +...+..+.+ .++...-...+.++...|....+...+..+-..++..+-...+.++...+. +++.
T Consensus 766 L~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchH
Confidence 666554432 3444445543 356777777888888888766554444444335676666777777776665 3455
Q ss_pred HHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 493 RLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 493 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..+..+++ +| ++......+.++.+.+.-.++...+....+
T Consensus 841 ~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 841 PALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55555553 23 356666777777775334456666655544
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.17 E-value=78 Score=28.80 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHhccCCHHHHHH
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPDSVT-------FIGLLTACNHAGLVKEGEA 425 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a~~ 425 (579)
+.+-..+.+++++|+..+.+....|+..+..+ ...+...|...|+...-.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 33445667788888888888888877766544 3445555666666544333
No 378
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.16 E-value=1.4e+02 Score=31.63 Aligned_cols=248 Identities=8% Similarity=-0.091 Sum_probs=120.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHH--HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHH
Q 047471 280 CADYEKGLSVFKEMSNDHGVRPDDF--TFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCS 357 (579)
Q Consensus 280 ~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 357 (579)
..+.+.|...+.......+..+... ....+.......+....+...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 3456777777776644423333222 22222222222222444444444333221 2333444445555577777777
Q ss_pred HHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH-HHHHHHhHHH
Q 047471 358 YKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEG-EAYFNSMEKT 433 (579)
Q Consensus 358 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 433 (579)
...+..|.. ....-..=+..++...|+.++|...|+++.. . .+|..++.+ .+.|..-.- ......-..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~- 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGEEYPLKIDKAPKPDS- 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCCCCCCCCCCCCchhh-
Confidence 777777732 1222233355555567777777777777633 1 123333221 111211000 000000000
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCccHH
Q 047471 434 YGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ---PTTTSPYV 510 (579)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~ 510 (579)
.+..+ . --.-+..+...|....|...+..+....++.....+.......|..+.++.........+ -.-|..|.
T Consensus 404 -~~~~~-~-~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~ 480 (644)
T PRK11619 404 -ALTQG-P-EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN 480 (644)
T ss_pred -hhccC-h-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence 00000 0 112245566778888888887776334555666666666667888888877665443311 11234566
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 047471 511 LLSNLYASDGMWGDVAGARKMLKDSGLKKE 540 (579)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 540 (579)
..+..+.+.-..+.++-+----.+++..|.
T Consensus 481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 481 DEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 666666666666665543223345655543
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.93 E-value=26 Score=27.21 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 047471 387 SALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLI 447 (579)
Q Consensus 387 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 447 (579)
+..+-++.+..-++-|++......+++|.+.+|+..|..+|+.+..+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44555666677778999999999999999999999999999988764 344444555554
No 380
>PF13934 ELYS: Nuclear pore complex assembly
Probab=71.51 E-value=74 Score=28.25 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=10.1
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 047471 410 LLTACNHAGLVKEGEAYFNSM 430 (579)
Q Consensus 410 ll~~~~~~~~~~~a~~~~~~~ 430 (579)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444445555555555443
No 381
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.14 E-value=40 Score=27.24 Aligned_cols=79 Identities=6% Similarity=0.049 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCC---------CCCcchHHHHHHHHHhCCC-cchHHHHHHHHHHCCCCCCcccHHHH
Q 047471 138 GNSLISMYMKVGYSSDALLVYGEAF---------EPNLVSFNALIAGFVENQQ-PEKGFEVFKLMLRQGLLPDRFSFAGG 207 (579)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 207 (579)
.+.++.-....+++...+.+++.+. ..+-..|++++.+...... ---+..+|+.|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566666566666666666655532 2455678888888765555 33466788888887788888888888
Q ss_pred HHHhcccCc
Q 047471 208 LEICSVSND 216 (579)
Q Consensus 208 l~~~~~~~~ 216 (579)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 887776543
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.86 E-value=50 Score=29.96 Aligned_cols=83 Identities=7% Similarity=-0.076 Sum_probs=37.6
Q ss_pred HHHHHhcCChHHHHHHHHcc----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----Hh
Q 047471 345 VNMYAKCGLISCSYKLFNEM----LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA-----CN 415 (579)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-----~~ 415 (579)
|++++..+++.++....-+. .+-.+.....-|-.|.+.+.+..+.++-..-....-.-+...|..++.. +.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 55566666666555432222 2222333333444555666666555555544442111122234444333 23
Q ss_pred ccCCHHHHHHHH
Q 047471 416 HAGLVKEGEAYF 427 (579)
Q Consensus 416 ~~~~~~~a~~~~ 427 (579)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 355666665554
No 383
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.71 E-value=4.5 Score=39.17 Aligned_cols=101 Identities=7% Similarity=-0.052 Sum_probs=72.3
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHH-HHHHHhcCChHHHHHHHHh-CCCCCCh-hhHHHHHHHHHhcCC
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCL-IDLLGRAGKLLEAEEYTKK-FPLGQDP-IVLGTLLSACRLRRD 487 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~l~~~~~~~~~ 487 (579)
+..+.+.++++.|..++.++++ +.||...|-.. ..++.+.+++..|+.=+.+ ++..|.. ..|..-..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4456678899999999999986 36765554333 3778899999998875554 4555532 344444566778889
Q ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 488 VVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 488 ~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
+.+|...|+....+.|+++..-..+-.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 999999999999999998755444433
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.74 E-value=12 Score=26.29 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=21.8
Q ss_pred ccCCHHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 047471 416 HAGLVKEGEAYFNSMEKTYGISPDI-EHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 461 (579)
..+..++|+..|....++..-+|+. .++..++.+|...|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666665555542211211 233444555555555555554
No 385
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.42 E-value=23 Score=27.47 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=38.0
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 466 FPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 466 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
+...|++.+....+.+|.+.+|+..|.++|+-....-++....|-.++
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 457899999999999999999999999999988765555444454443
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.97 E-value=1e+02 Score=29.94 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH--hccCCHHHHHHHHHHhHH
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSV--TFIGLLTAC--NHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~--~~~~~~~~a~~~~~~~~~ 432 (579)
+...+++..|.++++++... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33556666666666666664 444433 233333332 234556666666666554
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.77 E-value=50 Score=25.19 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
+.++..+.+++ ..-|..|+..|...|..++|++++.++.+
T Consensus 28 ~~~~~e~~L~~--------~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKE--------HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHH--------cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555533 45688888888888888888888888765
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.70 E-value=9.2 Score=26.84 Aligned_cols=45 Identities=4% Similarity=0.016 Sum_probs=28.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccHHH---HHHHHHcCCChHHHHHH
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTTSPYVL---LSNLYASDGMWGDVAGA 528 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~ 528 (579)
..++.++|+..|+++++..++.+.-+.. |+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777766665544443 44566666777666554
No 389
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.45 E-value=1.6e+02 Score=30.94 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=14.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH
Q 047471 103 FASAISACAGIQSLVKGQQIHAYSLK 128 (579)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (579)
|..+.+++.-..+.+.+.++++.+.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 34445555555666666666665555
No 390
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.62 E-value=28 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=19.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 479 LSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
+..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 3446666666666666666666 55554443333333
No 391
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.61 E-value=3.1e+02 Score=33.52 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----C-----CCCChhh
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-----P-----LGQDPIV 474 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~-----~~p~~~~ 474 (579)
.+|....+...+.|.++.|...+-.+.+. + .|. .+-..++.+...|+...|+.++++. + .++.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R-LPE--IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 45555566666677777776655555442 2 222 3344455566667777776666553 1 0111222
Q ss_pred HHHHHHH--------H-HhcCC--HHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 475 LGTLLSA--------C-RLRRD--VVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 475 ~~~l~~~--------~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
-+..+.. + ...++ -+..++.|.++.+..|.....++.++
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2222211 1 11222 34455677777777776555555555
No 392
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.49 E-value=1.3e+02 Score=29.08 Aligned_cols=57 Identities=9% Similarity=-0.038 Sum_probs=39.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhHH
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC-NHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~ 432 (579)
+..+.+.|-+..|+++.+-+...+..-|+......|+.| .+.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 456778888888888888888754444566666666664 466777777777776544
No 393
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=64.98 E-value=24 Score=20.45 Aligned_cols=28 Identities=11% Similarity=-0.085 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhcCCC
Q 047471 477 TLLSACRLRRDVVIGERLAK--QLFHLQPT 504 (579)
Q Consensus 477 ~l~~~~~~~~~~~~A~~~~~--~~~~~~p~ 504 (579)
.+...+...|++++|+.+++ -+..++|.
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34444555666666666633 55444443
No 394
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.57 E-value=59 Score=24.55 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=51.0
Q ss_pred ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHH
Q 047471 112 GIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKL 191 (579)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 191 (579)
.....++|..|.+++...+- ....+.-.-+..+.+.|++++|+..=.....||...|-+| +-.+.|--+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHH
Confidence 34466778888887777554 1222223334557789999999665556667888887655 44578888888888887
Q ss_pred HHHCC
Q 047471 192 MLRQG 196 (579)
Q Consensus 192 m~~~g 196 (579)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76654
No 395
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.21 E-value=1.1e+02 Score=27.56 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=32.4
Q ss_pred hCCChHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHhCcCChHHHHHHHHHHH
Q 047471 279 HCADYEKGLSVFKEMSNDHGVRPD--DFTFASILAACAGLASVQHGKQIHAHLI 330 (579)
Q Consensus 279 ~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (579)
+..++++|+.-|.+..+..|-+-+ --....++....+.+++++....+.++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 445788888888888765332222 2334456666677777777776666654
No 396
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.87 E-value=70 Score=25.89 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHcccC--------CCHhhHHHHHHHHhccCC-hHHHHHHHHHHHHhcCCCchhHHHHH
Q 047471 71 WSAMISGHHQAGEHLLALEFFSQMHLL--------PNEYIFASAISACAGIQS-LVKGQQIHAYSLKFGYASISFVGNSL 141 (579)
Q Consensus 71 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--------p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (579)
.+.++.-....+++...+.+++.+... .+...|..++++.+.... --.+..++..+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 344444444455555555555554322 455677778877766655 34466677777777778888888888
Q ss_pred HHHHHhc
Q 047471 142 ISMYMKV 148 (579)
Q Consensus 142 ~~~~~~~ 148 (579)
+..+.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8776554
No 397
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.78 E-value=62 Score=24.47 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=52.0
Q ss_pred hcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHc
Q 047471 15 TKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQM 94 (579)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 94 (579)
.-..++|..+.+.+...+. ....+--+-+..+.++|+|++|+..=.....||..+|-+|- -.+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 3467889999999888764 23333344556778899999995544445558888876664 45778888888888877
Q ss_pred ccC
Q 047471 95 HLL 97 (579)
Q Consensus 95 ~~~ 97 (579)
..+
T Consensus 96 a~~ 98 (116)
T PF09477_consen 96 ASS 98 (116)
T ss_dssp CT-
T ss_pred HhC
Confidence 554
No 398
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=62.89 E-value=30 Score=31.21 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 477 TLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 477 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.+-.++...++++.|....++.+.++|++|.-...-+-+|.+.|...-|++-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34456788899999999999999999999999999999999999999999998886655
No 399
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.74 E-value=1.1e+02 Score=27.13 Aligned_cols=117 Identities=9% Similarity=-0.034 Sum_probs=70.0
Q ss_pred HHhcCChHHHHHHHHcc--CCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHH
Q 047471 348 YAKCGLISCSYKLFNEM--LHRNVVS-WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSV-TFIGLLTACNHAGLVKEG 423 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~~~--~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a 423 (579)
|....+++.|+..|.+. ..|++.+ |+.-+.++.+..+++.+..--.+.++ +.||.. ....+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 44556788888887776 4566644 45567778888888888877777776 566644 333444556677788888
Q ss_pred HHHHHHhHHH---hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 424 EAYFNSMEKT---YGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 424 ~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
+..+.+.... ..+++.......|..+--..=...+...+.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888877332 133344444444444322222333334444443
No 400
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=61.82 E-value=1.5e+02 Score=28.40 Aligned_cols=216 Identities=13% Similarity=0.091 Sum_probs=125.1
Q ss_pred cCChHHHHHHHHccCC---------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 047471 351 CGLISCSYKLFNEMLH---------RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH----A 417 (579)
Q Consensus 351 ~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~ 417 (579)
.++.+.|.+-+-...+ .+...+..+++.|...++|+.--+.+.-+.+..-. .-.....++.-+.. .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5666666665544411 23345666777788888888776666555442111 11222223332211 1
Q ss_pred CCHHHHH---HHHHHhHHHhCC--CCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------h--hhHHHHHHHHH
Q 047471 418 GLVKEGE---AYFNSMEKTYGI--SPD-IEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQD------P--IVLGTLLSACR 483 (579)
Q Consensus 418 ~~~~~a~---~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~--~~~~~l~~~~~ 483 (579)
.+.+--+ +.++...+. .+ +.. ...-..|.+.+-.+|+.++|..++.+.+.+.- . ....--++.|.
T Consensus 104 ~d~~~k~~li~tLr~Vteg-kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTEG-KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred CCchhHHHHHHHHHHhhcC-ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1222222 222222220 11 011 12223466777889999999999998753211 1 11223356688
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCC-------ccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCeEEEEe
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTT-------SPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGTFEKFT 556 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (579)
..+|+-.|.-+-++.....-+.+ ..|..++......+.+=++-+.++..-.-|..+...--|+.+......|+
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~ 262 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFC 262 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEE
Confidence 89999999988888776442222 35777788888899999999999998877766655556887777776666
Q ss_pred ecccCCcchhhH
Q 047471 557 VAEFSHSKIGEI 568 (579)
Q Consensus 557 ~~~~~~~~~~~~ 568 (579)
...-.-++..++
T Consensus 263 ~LAp~dneQsdl 274 (439)
T KOG1498|consen 263 VLAPHDNEQSDL 274 (439)
T ss_pred eecCCCcHHHHH
Confidence 655444444433
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=61.76 E-value=24 Score=28.39 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCCh
Q 047471 457 LEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMW 522 (579)
Q Consensus 457 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 522 (579)
+.|.++.+-|. ...............|++..|.++.+.++..+|+|.......+.+|...|.-
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45555555553 2333444455567899999999999999999999999888888888776643
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=61.71 E-value=14 Score=33.54 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=39.5
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 450 LGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
..+.|+.++|..+|+.. ...| ++..+..+....-..++.-+|-.+|-+++..+|.|.++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 34677888888877764 4444 3444444444444567777888888888888887765443
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.01 E-value=39 Score=29.03 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=17.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 469 GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
.|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444455555555555555555444
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.35 E-value=74 Score=24.25 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777776665
No 405
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.57 E-value=20 Score=31.32 Aligned_cols=58 Identities=14% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 450 LGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
..+.|+.+.|.+++.+. ...| ....|..+....-+.|+++.|.+.+++.++++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34556666666666654 2233 3455655555566666666666666666666666543
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.89 E-value=22 Score=31.01 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=43.4
Q ss_pred HHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 047471 413 ACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD 471 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 471 (579)
...+.++.+.+.+++.++.. -.+.....|-.+...-.+.|+++.|.+-+++. +..|+
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34577888899999988886 44556677888888888899999999888875 44443
No 407
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.61 E-value=1.4e+02 Score=27.29 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=43.4
Q ss_pred HHHHHhCCChHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHh--
Q 047471 274 IAACSHCADYEKGLSVFKEMSND-HGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAK-- 350 (579)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 350 (579)
|++++..+++.+++...-+.-+. ..++|. ..-..|-.|.+.+++..+.++-..-....-..+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56677777777766654443322 023333 2333344456666666666665544433222223335555555443
Q ss_pred ---cCChHHHHHHH
Q 047471 351 ---CGLISCSYKLF 361 (579)
Q Consensus 351 ---~g~~~~A~~~~ 361 (579)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 45555555554
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.51 E-value=66 Score=23.27 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=25.7
Q ss_pred hcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHH
Q 047471 248 KFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKG 286 (579)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 286 (579)
..|+.+.|.+++..++ ..+..|..++.++...|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466777777777777 6667777777777766665544
No 409
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.28 E-value=1.1e+02 Score=31.40 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=64.4
Q ss_pred HHhcCChHHHHHHHHh-CCCCC-Ch------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 450 LGRAGKLLEAEEYTKK-FPLGQ-DP------IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~-~~~~p-~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
..+..++..+.++|.. |..-| |. .....+--.|....+.+.|.++++++-+.+|.++-.-.....+....|+
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3456777778887765 33222 21 2334455556677899999999999999999998888888899999999
Q ss_pred hHHHHHHHHHHHhC
Q 047471 522 WGDVAGARKMLKDS 535 (579)
Q Consensus 522 ~~~A~~~~~~~~~~ 535 (579)
-++|+..+......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999988877644
No 410
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=58.27 E-value=1.3e+02 Score=26.58 Aligned_cols=135 Identities=13% Similarity=0.211 Sum_probs=76.7
Q ss_pred HHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047471 344 LVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEG 423 (579)
Q Consensus 344 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 423 (579)
.+..|.+.-++.-|-...+++.+|=.. ...+--|.+..+.+--.++.+-....+++-+......++ +...||+..|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 345555555665555555555544221 111222444444343344444444455665555555554 5678999999
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 424 EAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
+..++.-...+|+-.. ..+|+-.. .|.|.....++..|. .+++++|.+.+.++++++-
T Consensus 212 lNnLQst~~g~g~Vn~--------------------enVfKv~d-~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVNQ--------------------ENVFKVCD-EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHhccccccch--------------------hhhhhccC-CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCC
Confidence 8888877664332211 12222222 577777777777664 4578888888888888774
Q ss_pred C
Q 047471 504 T 504 (579)
Q Consensus 504 ~ 504 (579)
+
T Consensus 270 s 270 (333)
T KOG0991|consen 270 S 270 (333)
T ss_pred C
Confidence 4
No 411
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.18 E-value=1.9e+02 Score=28.57 Aligned_cols=13 Identities=23% Similarity=0.084 Sum_probs=5.1
Q ss_pred hcCChhHHHHHhc
Q 047471 147 KVGYSSDALLVYG 159 (579)
Q Consensus 147 ~~g~~~~A~~~~~ 159 (579)
..|+.+-+.-+++
T Consensus 44 ~~~~~~~v~~Ll~ 56 (413)
T PHA02875 44 KFRDSEAIKLLMK 56 (413)
T ss_pred HcCCHHHHHHHHh
Confidence 3344443333333
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.16 E-value=87 Score=33.47 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=88.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVK 421 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 421 (579)
.++|..+.+.|.++-|+.+.+.- .+. ...+...|+.+.|++.-.++ -+..+|..|...-...|+.+
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~-----~tR---F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDE-----RTR---FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCc-----chh---eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchH
Confidence 45566666677766666554432 111 12234557777776554332 25567777777777778887
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047471 422 EGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 422 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
-|+..|++... |+.|.-.|.-.|+.++-.++.+..+...|.... .......|+.++-..+++..-..
T Consensus 690 IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~---~qnalYl~dv~ervkIl~n~g~~ 756 (1202)
T KOG0292|consen 690 IAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQ---FQNALYLGDVKERVKILENGGQL 756 (1202)
T ss_pred HHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHH---HHHHHHhccHHHHHHHHHhcCcc
Confidence 77777776643 444555666777777777766665433333221 11222356666666665542211
Q ss_pred CCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 502 QPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 502 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+-.| ..-...|.-++|.++.++..+.
T Consensus 757 ----~lay----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 757 ----PLAY----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred ----cHHH----HHHhhcCcHHHHHHHHHhhccc
Confidence 1111 1223457777777777777653
No 413
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.61 E-value=43 Score=28.79 Aligned_cols=52 Identities=19% Similarity=0.122 Sum_probs=35.4
Q ss_pred hccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 415 NHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 415 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
....+.+......+.+.+.....|++.++..++.++...|+.++|..+..++
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555544444444443355788888888888888888888888887776
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=57.28 E-value=67 Score=25.32 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcC--CCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 490 IGERLAKQLFHLQ--PTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 490 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
.+.++|+.+...+ -..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777644 55667788888888888888888888874
No 415
>PRK10941 hypothetical protein; Provisional
Probab=55.55 E-value=1.6e+02 Score=26.91 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
.+.+-.+|.+.++++.|+.+.+.+.. +.|+ +.-+.--.-.|.+.|.+..|..-++..++...-.|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34455667777778888887777777 3444 4334444445777777777777777776653444444444444433
No 416
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.06 E-value=61 Score=30.24 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=62.6
Q ss_pred HHHHHhcCChHHHHHHHHhC--CC--CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCC
Q 047471 447 IDLLGRAGKLLEAEEYTKKF--PL--GQD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDG 520 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~--~~--~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 520 (579)
.+-|.+..++..|...|.+- .. .|| ...|..-..+....|++..|+.=..+++..+|.+...|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 44566777777777777664 11 222 2345554555566789999999999999999999999988888998888
Q ss_pred ChHHHHHHHHHH
Q 047471 521 MWGDVAGARKML 532 (579)
Q Consensus 521 ~~~~A~~~~~~~ 532 (579)
++++|....++.
T Consensus 168 ~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 168 RFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHhhh
Confidence 888777766654
No 417
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.05 E-value=1.3e+02 Score=30.53 Aligned_cols=90 Identities=12% Similarity=0.089 Sum_probs=60.9
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHH-ccCChhHHHHHhcccCC-------CCcccHHHHHHH
Q 047471 6 SSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYA-KCGKMILARKVFDEMSE-------RNLVSWSAMISG 77 (579)
Q Consensus 6 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-------~~~~~~~~l~~~ 77 (579)
..-++.+.++|.+..|.++...+.+..+.-|+.....+|+.|+ ++.+++=.+++++.... ||...-.+|...
T Consensus 346 ~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f 425 (665)
T KOG2422|consen 346 FRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARF 425 (665)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHH
Confidence 3456777889999999999999999887667888888888885 66778877777776532 444333445555
Q ss_pred HHhcCC---hHHHHHHHHHcc
Q 047471 78 HHQAGE---HLLALEFFSQMH 95 (579)
Q Consensus 78 ~~~~g~---~~~a~~~~~~~~ 95 (579)
|.+... -..|+..+.++.
T Consensus 426 ~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 426 FLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred HHhcCChhhHHHHHHHHHHHH
Confidence 555444 344555555443
No 418
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.98 E-value=2.4e+02 Score=28.39 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=108.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHH
Q 047471 266 DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALV 345 (579)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 345 (579)
|-...-+++..+..+-...-...+-.+|..- ..+...|..++.+|... ..+....+|+++.+..+ .|+..-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 4455667777787777777777888888754 45667788888888777 66777788888887763 3444445666
Q ss_pred HHHHhcCChHHHHHHHHccCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 047471 346 NMYAKCGLISCSYKLFNEMLH-----RNV----VSWNTIIAAHANHRLGGSALKLFEQMKA-TGIKPDSVTFIGLLTACN 415 (579)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~ 415 (579)
..|.+ ++.+.+...|.++.. ... ..|.-+...- ..+.+..+.+..+... .|..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 66666 777777777777621 111 1344433321 3455666666666554 333333445555556677
Q ss_pred ccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 416 HAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
...++++|++++..+.+ ....|...-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILE--HDEKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhh--hcchhhhHHHHHHHHH
Confidence 77778888888777776 3344555545555444
No 419
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.67 E-value=2.4e+02 Score=28.10 Aligned_cols=121 Identities=13% Similarity=0.074 Sum_probs=73.9
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCCHHH-------HHHHHH-HHhCcCChHHHHHHHHHHHHccCCCCcchH--hHHHH
Q 047471 277 CSHCADYEKGLSVFKEMSNDHGVRPDDFT-------FASILA-ACAGLASVQHGKQIHAHLIRMRLNQDVGVG--NALVN 346 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-------~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~ 346 (579)
-.-.|++.+|++-...|.+...-.|.+.. ...++. -|...+.++.|+.-|....+.--..|...+ ..+.-
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi 412 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAI 412 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Confidence 34579999999999988876444555221 111222 345667888888888777665434443332 23455
Q ss_pred HHHhcCChHHHHHHHHccCCCChhhHHH--------HHHH--HHhcCChHHHHHHHHHHHH
Q 047471 347 MYAKCGLISCSYKLFNEMLHRNVVSWNT--------IIAA--HANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 347 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~m~~ 397 (579)
.|.+.|+.+.-.++++.+..++..++.. ++.+ ....+++.+|...+++-.+
T Consensus 413 ~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 413 SYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6778888888778887776554443322 1111 2356777888777777665
No 420
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.39 E-value=87 Score=22.89 Aligned_cols=51 Identities=14% Similarity=-0.050 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CccHHHHHHHHHcCCC
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT--TSPYVLLSNLYASDGM 521 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 521 (579)
|......+...+...|+++.|.+.+-.+++.+|+. ...-..++.++.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 44555556666666677777777666666665442 4445556666665555
No 421
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.35 E-value=46 Score=21.38 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=16.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPDSV 405 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 405 (579)
+.-++.+.|+++.|.+..+.+.+ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 34455666666666666666666 455543
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.77 E-value=2.4e+02 Score=27.88 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=31.8
Q ss_pred hHHHHHHHHHh---CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCc
Q 047471 269 SWNTFIAACSH---CADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGL 316 (579)
Q Consensus 269 ~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 316 (579)
.+..++.++.+ .++.+.|+.++..|.+. |..|....-..++.++-..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~-G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEA-GEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhh
Confidence 34445555554 47899999999999988 8888766655555554333
No 423
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.51 E-value=1.8e+02 Score=26.33 Aligned_cols=129 Identities=13% Similarity=0.085 Sum_probs=69.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSVT---FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGK 455 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (579)
+.+.....+|+++-++.+. +.|-..| |...+--. -..+..+-+++++++.+ ..+.|-..|..=-......|+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~-l~~dL~~El~~l~eI~e--~npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIR--LNPANYTVWQYRRVILRH-LMSDLNKELEYLDEIIE--DNPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HhccccCHHHHHHHHHHHH--hCcccchHHHHHHHHHHH-hHHHHHHHHHHHHHHHH--hCccchhHHHHHHHHHHHhcC
Confidence 4566667777777777776 3443333 22222111 12345666677777776 334454444332222333444
Q ss_pred hH-HHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHH
Q 047471 456 LL-EAEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLL 512 (579)
Q Consensus 456 ~~-~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 512 (579)
.. .-+++.+.|- ...+-..|..--+++...++++.-..+..++++.+--|-++|+.-
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQR 187 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhee
Confidence 44 4455555552 223445566666666667777777777777777665555555543
No 424
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.51 E-value=2.1e+02 Score=26.99 Aligned_cols=83 Identities=19% Similarity=0.042 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhHHHhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047471 420 VKEGEAYFNSMEKTYGI---SPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAK 496 (579)
Q Consensus 420 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 496 (579)
.+.|.+.|+.......- ..++.....+.....+.|+.++-..+++.....+++..-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 45667777776662111 334455555666666777665555555555545566777777777777777777777777
Q ss_pred HHHhcC
Q 047471 497 QLFHLQ 502 (579)
Q Consensus 497 ~~~~~~ 502 (579)
.++.-+
T Consensus 226 ~~l~~~ 231 (324)
T PF11838_consen 226 LLLSND 231 (324)
T ss_dssp HHHCTS
T ss_pred HHcCCc
Confidence 777743
No 425
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.55 E-value=2.3e+02 Score=27.34 Aligned_cols=95 Identities=17% Similarity=0.073 Sum_probs=61.6
Q ss_pred ChhHHHHH---HHHHHhcCChHHHHHHHHhC-CCCC--ChhhHHHHHHHH-HhcCCHHHHHHHHHHHHhcCC-----CCC
Q 047471 439 DIEHFTCL---IDLLGRAGKLLEAEEYTKKF-PLGQ--DPIVLGTLLSAC-RLRRDVVIGERLAKQLFHLQP-----TTT 506 (579)
Q Consensus 439 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p-----~~~ 506 (579)
|...|.++ +..+.+.|.+..|.++.+-+ ...| |+......|..| .+.++++--+++.+....... .-|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 45555544 55678889999999888775 4444 555555566655 457788888888887665211 124
Q ss_pred ccHHHHHHHHHcCCCh---------------HHHHHHHHHHH
Q 047471 507 SPYVLLSNLYASDGMW---------------GDVAGARKMLK 533 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~---------------~~A~~~~~~~~ 533 (579)
......+-++...++. ++|.+.+++..
T Consensus 179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHH
Confidence 5566666777777776 67776665543
No 426
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.36 E-value=40 Score=30.94 Aligned_cols=79 Identities=3% Similarity=-0.120 Sum_probs=51.7
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHH
Q 047471 436 ISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGT-LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLL 512 (579)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 512 (579)
+.-|+..|...+.-..+.|.+.+.-.++.+. ...| +...|-. -..-+...++++.+..++.+.++.+|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445666665555555666666666666665 3344 4444432 12224567899999999999999999999887765
Q ss_pred HH
Q 047471 513 SN 514 (579)
Q Consensus 513 ~~ 514 (579)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.34 E-value=47 Score=20.74 Aligned_cols=37 Identities=3% Similarity=-0.026 Sum_probs=28.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 047471 107 ISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLIS 143 (579)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (579)
+....+.|-.+++...++.|.+.|+..+...+..++.
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3344567777788888999988898888887777665
No 428
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.84 E-value=2.7e+02 Score=27.82 Aligned_cols=317 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCC------hhHHHHHHHhcCCC-
Q 047471 193 LRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNL------IGEAEKAFRLIEEK- 265 (579)
Q Consensus 193 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~- 265 (579)
+..+...........-..-...+.++...+..+.+...|.....+.++.-+..|.+.|. .++-..+-.....+
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred ----------CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh--------CcCChHHHHHHHH
Q 047471 266 ----------DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACA--------GLASVQHGKQIHA 327 (579)
Q Consensus 266 ----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~--------~~~~~~~a~~~~~ 327 (579)
+...+-...-.|.....+..|+++....... +.|=...+........ ...+...-+.+++
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r--~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~ 166 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR--TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLA 166 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 047471 328 HLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM-LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVT 406 (579)
Q Consensus 328 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 406 (579)
++...+ .....--+.-.....+.+....|..-+-.. .+....-|. +.+|.+..+...+..-.+.... +.-|...
T Consensus 167 ~~~~~~-~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~yk--Vr~llq~~~Lk~~krevK~vmn--~a~~s~~ 241 (696)
T KOG2471|consen 167 EIEAEK-RMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYK--VRFLLQTRNLKLAKREVKHVMN--IAQDSSM 241 (696)
T ss_pred HHHHhh-hccccccccchhhhcccCCcchhcccchhhccchhhhHhh--HHHHHHHHHHHHHHHhhhhhhh--hcCCCcH
Q ss_pred HHHHHHH-HhccCCHHHHHHHHHHhHHHhCCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHhCC----------
Q 047471 407 FIGLLTA-CNHAGLVKEGEAYFNSMEKTYGISP--------DIEHFTCLIDLLGRAGKLLEAEEYTKKFP---------- 467 (579)
Q Consensus 407 ~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------- 467 (579)
+..|-.- +.-.|++.+|.+++-..--. .-+- ....||.|.-.+.+.|.+.-+..+|.+.-
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~-~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIH-KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccc-cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred ----------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 468 ----------LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 468 ----------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
......+.....-.+...|+.-.|.+.|.++......||..|..|+.++.
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
No 429
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=50.42 E-value=1.2e+02 Score=23.76 Aligned_cols=59 Identities=20% Similarity=0.116 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIV-LGTLLSACRLRRDVVIGERLAKQL 498 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~ 498 (579)
..+..++.-++.-.|..++|.+++...+..+.-.. -..++..|....+-++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34555666666667777777777776654333322 234555566555555555544443
No 430
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.70 E-value=1.6e+02 Score=27.68 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=10.6
Q ss_pred HhCcCChHHHHHHHHHHHH
Q 047471 313 CAGLASVQHGKQIHAHLIR 331 (579)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~ 331 (579)
..+.++.++|.++++++.+
T Consensus 85 ~~~~~D~~~al~~Le~i~~ 103 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIE 103 (380)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3344466666666665553
No 431
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=49.03 E-value=1.6e+02 Score=24.85 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC----C-------HHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 386 GSALKLFEQMKATGIKPD-SVTFIGLLTACNHAG----L-------VKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
++|+.-|++... +.|+ ..++..+..++...+ + +++|...|++... ..|+..+|+.-+...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 445555555555 4565 345555555544322 2 3344444444433 356666665555443
No 432
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.54 E-value=1e+02 Score=31.28 Aligned_cols=122 Identities=15% Similarity=0.007 Sum_probs=85.6
Q ss_pred HHHHH-hcCChHHHHHHHHhC-CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCCh
Q 047471 447 IDLLG-RAGKLLEAEEYTKKF-PLGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMW 522 (579)
Q Consensus 447 ~~~~~-~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 522 (579)
...|. ..|+...|.+.+... ...| .......|.....+.|-...|..++.+.+.+....|-.+..++++|....+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 33444 468999999877664 3444 2345566777777888888899999999998877788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCc---------------eEEEEcCeEEEEeecccCCcchhhHH
Q 047471 523 GDVAGARKMLKDSGLKKEPSY---------------SMIEVQGTFEKFTVAEFSHSKIGEIN 569 (579)
Q Consensus 523 ~~A~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (579)
+.|++.++...+...+ .|.+ -.......+-..++.+.|-|+...-|
T Consensus 693 ~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c~~~~~~~~~~~~svc~~~ive~sn~~d~~~n~ 753 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTK-CPECENSLKLIRCMQFYPFLYNITSSVCSGTVVEESNGSDEMENS 753 (886)
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhhhhhHHHhccccceeeeeeecCCCcchhhcc
Confidence 9999999988776442 2221 01112233455677777777654333
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.47 E-value=1.3e+02 Score=25.49 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=10.2
Q ss_pred HHhccCCHHHHHHHHHHhH
Q 047471 413 ACNHAGLVKEGEAYFNSME 431 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~ 431 (579)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3555555555555555554
No 434
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=48.46 E-value=2.4e+02 Score=26.50 Aligned_cols=132 Identities=13% Similarity=0.089 Sum_probs=73.3
Q ss_pred CCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHc-cCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--------CC
Q 047471 298 GVRPDDFTFASILAACAGLASVQHGKQIHAHLIRM-RLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--------RN 368 (579)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~ 368 (579)
.++.|...++.|..+ +..++++-.+..+...+. |-.--..........|++.|+-+.|.+.++...+ -|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 455555555555433 222333333333443332 2222234455667788999999999988887632 34
Q ss_pred hhhHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 369 VVSWNTII-AAHANHRLGGSALKLFEQMKATGIKPDS----VTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 369 ~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
+..+.+-+ -.|....-..+-++..+.+.+.|-..+. .+|..+- |....++.+|-.+|-+....
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 43333222 2233333445555666666777765542 3455443 45567899999988887764
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.31 E-value=29 Score=27.40 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHH
Q 047471 176 FVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEI 210 (579)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 210 (579)
.-..|.-..|-.+|+.|.++|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34457778899999999999999984 5555544
No 436
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.30 E-value=2.2e+02 Score=26.09 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=26.1
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHH
Q 047471 172 LIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFA 205 (579)
Q Consensus 172 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 205 (579)
+.+...+.+++++|...+.+....|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 4556677888899999999998888877766553
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.05 E-value=2.3e+02 Score=27.60 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=40.4
Q ss_pred HHhccCCHHHHHHHHHHhHHHhCCCCChh--HHHHHHHHHH--hcCChHHHHHHHHhCC
Q 047471 413 ACNHAGLVKEGEAYFNSMEKTYGISPDIE--HFTCLIDLLG--RAGKLLEAEEYTKKFP 467 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~ 467 (579)
.+.+.+++..|.++++.+.++ ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456889999999999999884 555554 4555666664 5778999999999874
No 438
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.05 E-value=60 Score=23.37 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHH
Q 047471 21 GISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLA 87 (579)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 87 (579)
+..++..+.+.|+ .+....-..-+...+.+.+.++++.++.++..+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4567888888774 33333333444556788899999999999999999999998887765443
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.94 E-value=33 Score=33.63 Aligned_cols=103 Identities=11% Similarity=0.073 Sum_probs=72.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhc
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKPDSVTF-IGLLTACNHAGLVKEGEAYFNSMEKTYGISPD-IEHFTCLIDLLGRA 453 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 453 (579)
+..+...+.++.|..++.+.++ +.||...| ..-..++.+.+++..|+.=+..+++. .|+ ...|..=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4556778899999999999999 57875544 44447789999999999888888763 233 22333333445556
Q ss_pred CChHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 047471 454 GKLLEAEEYTKKF-PLGQDPIVLGTLLSACR 483 (579)
Q Consensus 454 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 483 (579)
+++.+|...|+.. ...|+..-+...+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 6777777777775 46787777766666653
No 440
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.82 E-value=1.1e+02 Score=27.19 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHH
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVL 511 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 511 (579)
.+..+..++...|++-++++...++ ...| +...+..-..+....-+..+|..=|.++++++|.-.++...
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 3444566777888888888887776 3333 45566666666677778899999999999999976555443
No 441
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.68 E-value=3.5e+02 Score=28.21 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHH
Q 047471 266 DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALV 345 (579)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 345 (579)
+...|..-+..+...++.. ....+....+ -.-.+......++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~-~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL 445 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPR-VPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEAL 445 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhh-CCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHH
Confidence 4445655555554444322 4555555554 22345566677888888888888888888766544322 23456667
Q ss_pred HHHHhcCChHHHHHHHHcc
Q 047471 346 NMYAKCGLISCSYKLFNEM 364 (579)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~~ 364 (579)
..+.++|+...+..+-+.+
T Consensus 446 ~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 446 SWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHH---------------
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 7788888877766655554
No 442
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.88 E-value=25 Score=32.75 Aligned_cols=83 Identities=13% Similarity=-0.078 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHH
Q 047471 418 GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPI-VLGTLLSACRLRRDVVIGERLA 495 (579)
Q Consensus 418 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~ 495 (579)
|.++.|++.|...++ --++....|..-..++.+.++...|+.-+... .++||.. -|..-..+....|++++|...+
T Consensus 128 G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 444455554444443 12222333333334444444444444433332 2333321 1222222333345555555555
Q ss_pred HHHHhcC
Q 047471 496 KQLFHLQ 502 (579)
Q Consensus 496 ~~~~~~~ 502 (579)
+.+.+++
T Consensus 206 ~~a~kld 212 (377)
T KOG1308|consen 206 ALACKLD 212 (377)
T ss_pred HHHHhcc
Confidence 5555544
No 443
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.18 E-value=76 Score=28.66 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=11.3
Q ss_pred HHHHhccCCHHHHHHHHHHhHH
Q 047471 411 LTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~ 432 (579)
...|...|++++|.++|+.+..
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3335555555555555555543
No 444
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=46.00 E-value=51 Score=28.36 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=32.8
Q ss_pred hHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCch-hHHHHHHHHHccCC
Q 047471 4 SISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVI-VSNHVLNLYAKCGK 52 (579)
Q Consensus 4 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 52 (579)
..+.+++.|.-+|+++.|.++|..+++.. +.|+. .|..=+..+.+.+.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~ 91 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGE 91 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCC
Confidence 46788999999999999999999998864 23333 34444444444443
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.83 E-value=43 Score=30.77 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIG 409 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 409 (579)
-|+..|....+.||+++|+.++++.++.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 356788888888999999999999988887655555543
No 446
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=44.56 E-value=2.6e+02 Score=25.82 Aligned_cols=112 Identities=7% Similarity=0.042 Sum_probs=68.3
Q ss_pred hHHHHHHHHcc-----CCCChhhHHHHHHHHHhc-C-ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047471 354 ISCSYKLFNEM-----LHRNVVSWNTIIAAHANH-R-LGGSALKLFEQMKA-TGIKPDSVTFIGLLTACNHAGLVKEGEA 425 (579)
Q Consensus 354 ~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 425 (579)
+.+|+++|+.. +-.|..+...+++..... + ....-.++.+-+.. .|-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 45566666632 113444444455544431 1 12222333333332 3356677777788888888888888888
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 047471 426 YFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKK 465 (579)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (579)
+++......+...|...|...++.....|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8887765323455777788888888888888777777766
No 447
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.53 E-value=1.6e+02 Score=23.27 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHH
Q 047471 387 SALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNS 429 (579)
Q Consensus 387 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 429 (579)
.+.++|..|...|+--. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666655443 44555555556666666666666654
No 448
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=43.98 E-value=1.5e+02 Score=23.03 Aligned_cols=22 Identities=9% Similarity=-0.095 Sum_probs=14.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHH
Q 047471 511 LLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
.-+.++...|+.++|++.|+..
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 3455667778888887777654
No 449
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.91 E-value=4.1e+02 Score=28.01 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=33.5
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHhcccC---CCCcccHHHHHHHHHhcCC-------hHHHHHHHHHcccC
Q 047471 35 PDVIVSNHVLNLYAKCGKMILARKVFDEMS---ERNLVSWSAMISGHHQAGE-------HLLALEFFSQMHLL 97 (579)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~ 97 (579)
.+..+| .++-.+.|+|++++|.++..+.. +.....+-..+..|+...+ -++...-|++....
T Consensus 110 ~~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 110 NGDPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TTEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCCccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 334455 45677778888888888883332 2333455566666655422 23444555554433
No 450
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.74 E-value=2.3e+02 Score=24.96 Aligned_cols=128 Identities=16% Similarity=0.038 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHH-hCCCCChhHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKT-YGISPDIEHFTCLIDLL 450 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 450 (579)
.+.-++.+.+.+..++++...++-++.. +.|..+-..++..++-.|++++|..-++-..+- ....+....|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~- 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC- 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-
Confidence 3445667777888888888887776642 224555566777788888888888777665431 0122233445444443
Q ss_pred HhcCChHHHHH-HHHhC--C---CCCChhhHHHHHHHHH-h-cCCHHHHHHHHHHHHhcCCCCCc
Q 047471 451 GRAGKLLEAEE-YTKKF--P---LGQDPIVLGTLLSACR-L-RRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 451 ~~~g~~~~A~~-~~~~~--~---~~p~~~~~~~l~~~~~-~-~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
+.+.. +|.-- + ..|.+.=...+..+.. + .|..+.+..+-+.+++..|..+.
T Consensus 82 ------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 ------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred ------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 22222 33332 1 1122222233333332 2 23445556666677776666443
No 451
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.71 E-value=1.2e+02 Score=21.84 Aligned_cols=41 Identities=7% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHcc
Q 047471 324 QIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEM 364 (579)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 364 (579)
++|+.....|+..|+.+|..+++...-.=.++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 67777777788888888888777776666666666666665
No 452
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.40 E-value=2.3e+02 Score=26.34 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHH
Q 047471 187 EVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVK 229 (579)
Q Consensus 187 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 229 (579)
++++.|...++.|.-..|..+.-.+.+.=.+..+..+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3445555555666655555555555555555555555555543
No 453
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.37 E-value=2.8e+02 Score=25.84 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=51.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH----------hcCChHH
Q 047471 389 LKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG----------RAGKLLE 458 (579)
Q Consensus 389 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 458 (579)
.++|+.+.+.++.|.-..|..+.-.+.+.=.+...+.+|+.+... | .-|..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~--~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----P--QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----h--hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467788888888998888887777777777888888888888753 2 22444444443 3467777
Q ss_pred HHHHHHhCC
Q 047471 459 AEEYTKKFP 467 (579)
Q Consensus 459 A~~~~~~~~ 467 (579)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777776654
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.25 E-value=59 Score=21.69 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=12.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 047471 408 IGLLTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 408 ~~ll~~~~~~~~~~~a~~~~~~~~~ 432 (579)
..+|.++...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 455
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=42.84 E-value=1.3e+02 Score=24.35 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 047471 391 LFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG 454 (579)
Q Consensus 391 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (579)
+.+.+.+.|++++..-. .++..+...++.-.|.++++++.+. +.+.+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 44555667777665433 3445556666667778888887765 54444554444444444444
No 456
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.83 E-value=83 Score=19.65 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=19.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047471 381 NHRLGGSALKLFEQMKATGIKPDSVTFIGLLT 412 (579)
Q Consensus 381 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 412 (579)
+.|-.+++...+++|.+.|+..+...+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555666666666666666666666555543
No 457
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=41.45 E-value=3.6e+02 Score=26.63 Aligned_cols=176 Identities=15% Similarity=0.024 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHh
Q 047471 302 DDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHAN 381 (579)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 381 (579)
+...-..+..++...+.......+...+ + .+++.+....+.++...+. +-...+..-+..++......-+.++..
T Consensus 99 ~~~vr~aaa~ALg~i~~~~a~~~L~~~L-~---~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 99 PEGLCAGIQAALGWLGGRQAEPWLEPLL-A---ASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHh-c---CCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 4444555666666655555444433333 2 2233333344444443321 111111112224444444555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 382 HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 382 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
.++. .+...+..+.. .+|...=..-+.+....|. ..|...+...... ++......+...+...| .+++.+
T Consensus 174 l~~~-~a~~~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~----~g~~~~~~l~~~lal~~-~~~a~~ 243 (410)
T TIGR02270 174 LPRR-LSESTLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL----EGGPHRQRLLVLLAVAG-GPDAQA 243 (410)
T ss_pred hccc-cchHHHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc----cCccHHHHHHHHHHhCC-chhHHH
Confidence 5543 23333333322 2344444444445555555 4454444443221 22222222333222222 235555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047471 462 YTKKFPLGQDPIVLGTLLSACRLRRDVVIGERL 494 (579)
Q Consensus 462 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 494 (579)
.+..+...++ +-...+.++.+.|+.....-+
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~lg~p~av~~L 274 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGLVGDVEAAPWC 274 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHHcCCcchHHHH
Confidence 5555432232 444555555566555543333
No 458
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.34 E-value=35 Score=31.36 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccH
Q 047471 168 SFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSF 204 (579)
Q Consensus 168 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 204 (579)
-|+.-|....+.||+++|+.++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3778899999999999999999999998876554444
No 459
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.06 E-value=1.6e+02 Score=27.63 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHHhcCChHHHHHHHHHcccC------CCHhhHHHHH--HHHhccCChHHHHHHHHHHHH
Q 047471 76 SGHHQAGEHLLALEFFSQMHLL------PNEYIFASAI--SACAGIQSLVKGQQIHAYSLK 128 (579)
Q Consensus 76 ~~~~~~g~~~~a~~~~~~~~~~------p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~ 128 (579)
...-+.++.++|+++++++... |+...|...- +.+...||+.++++++++...
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3334445666666666666544 4444333322 223345555555555555544
No 460
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=40.74 E-value=4.1e+02 Score=27.08 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=31.0
Q ss_pred hHHHHHHHhcCChHHHHHHHHccC--CCChhhHH---HHHHHHHhcCChHHHHHHHHHHHH
Q 047471 342 NALVNMYAKCGLISCSYKLFNEML--HRNVVSWN---TIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
..++.-|.+.+++++|..++..|- .-....|. .+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 356777888888888888888772 12222332 333334444434444445555444
No 461
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.31 E-value=1.5e+02 Score=21.78 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=13.1
Q ss_pred HHHhccCCHHHHHHHHHHhHH
Q 047471 412 TACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 412 ~~~~~~~~~~~a~~~~~~~~~ 432 (579)
......|++++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 335556677777766666654
No 462
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.13 E-value=46 Score=22.20 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
.-.++.+|.+.|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34467788888888888888887765
No 463
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.88 E-value=2.2e+02 Score=27.60 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHc--cCCCCcchHhHHHHHHHhcCChHHHHHHHHcc
Q 047471 305 TFASILAACAGLASVQHGKQIHAHLIRM--RLNQDVGVGNALVNMYAKCGLISCSYKLFNEM 364 (579)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 364 (579)
+...|++.+.-.|+.....++++.+.+. |..|...+-.-+.-+|...|++.+|.+.|-.+
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 4445666666677766666666666543 33333333344666777788888888887765
No 464
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.11 E-value=1.9e+02 Score=22.77 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcC--CCCCccHHHHHHHHHcCCChHHHHHHHH
Q 047471 491 GERLAKQLFHLQ--PTTTSPYVLLSNLYASDGMWGDVAGARK 530 (579)
Q Consensus 491 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (579)
..++|..+...+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677776644 4556678888889999999999988876
No 465
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.94 E-value=2.5e+02 Score=24.07 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=51.7
Q ss_pred HHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccC---
Q 047471 258 AFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRL--- 334 (579)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 334 (579)
+.++..++....|..+..+-++.-+.+++-..|- ...=.+++..|.+..++.++.++++.+.+..+
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L-----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft 166 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL-----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT 166 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3334444445566666666665544444322221 11223455667777788888888887765432
Q ss_pred -----------CCCcchHhHHHHHHHhcCChHHHHHHHHc
Q 047471 335 -----------NQDVGVGNALVNMYAKCGLISCSYKLFNE 363 (579)
Q Consensus 335 -----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 363 (579)
.+.-.+.|.....+.++|.++.|..++++
T Consensus 167 ~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 167 SLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22233445555566666666666666654
No 466
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=38.90 E-value=1.8e+02 Score=28.45 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHh-----CCC-CChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTY-----GIS-PDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
...|++..+-.||+..|+++++.+.-.. .++ -.+.++..+.-+|.-.+++.+|.+.|..+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777788888887777652210 011 12345566667777777787777777765
No 467
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=38.85 E-value=5.4e+02 Score=27.88 Aligned_cols=356 Identities=7% Similarity=-0.101 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHH-HHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhc
Q 047471 171 ALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGG-LEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKF 249 (579)
Q Consensus 171 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 249 (579)
.++..+.+.|+.+.|.+++++... ..+-..++... +.++.+.-+...-.++--++...=-..+..-|-..+....-.
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~--~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~iig~ 407 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKD--FFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKIIGG 407 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh--hHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHHhc
Q ss_pred CChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHH------HHHHHHHhhhCCC---CCCCHHHHHHHHHHHhCcCChH
Q 047471 250 NLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEK------GLSVFKEMSNDHG---VRPDDFTFASILAACAGLASVQ 320 (579)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~m~~~~~---~~p~~~~~~~ll~~~~~~~~~~ 320 (579)
.++ -...=+-+..-+-..|..|.-.....+..+. -...........| +.++.........++.-.|.++
T Consensus 408 cd~--~~~~~ev~~tiED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLsgqfe 485 (835)
T KOG2168|consen 408 CDL--RRDLPEVADTIEDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLLSGQFE 485 (835)
T ss_pred Ccc--ccccHHHHhHHHHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047471 321 HGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNV---VSWNTIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
.|+.++......++..--......=..+.+.+......-+...+..|.. .-+..|+.+|.+.=....+...++-..-
T Consensus 486 ~AI~fL~~~~~~~~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~al~y~~~ 565 (835)
T KOG2168|consen 486 RAIEFLHREEPNRIDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRVALQYYYL 565 (835)
T ss_pred HHHHHHHhhcCCcchhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhccchhhhheeee
Q ss_pred CCCCCCHHHHHHHHHHHhc----------------cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 398 TGIKPDSVTFIGLLTACNH----------------AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 398 ~~~~p~~~~~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
....+|...-+..+.+.+. .++-..--.++++... .+..-.......++-.-..|.+++|..
T Consensus 566 lr~~~d~q~~~l~l~~v~~lVl~t~~~f~~iLG~i~~dG~r~~G~l~~f~~--~~~~~~~i~~~vA~~a~~~G~~~~sI~ 643 (835)
T KOG2168|consen 566 LRLNKDPQGSNLFLKCVCELVLETEEEFDLILGKIKPDGSREPGLLDEFLP--LIEDLQKIILEVASEADEDGLFEDAIL 643 (835)
T ss_pred ecccCChhHHHHHHHHHHHHHHhccccHHHHhcccCCCCCCCcchHhhhcc--chhhHHHHHHHHHHHHHhcCCHHHHHH
Q ss_pred HHHhCCCCCCh--hhHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCCccHHH-------------HHHHHHcCCC
Q 047471 462 YTKKFPLGQDP--IVLGTLLSACRLRR-----DVVIGERLAKQLFHLQPTTTSPYVL-------------LSNLYASDGM 521 (579)
Q Consensus 462 ~~~~~~~~p~~--~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~-------------l~~~~~~~g~ 521 (579)
++...+ .+|. .+.+.++.--...- +.+.-..+...+.+....++..... -+.=+...|+
T Consensus 644 LY~lag-~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~ 722 (835)
T KOG2168|consen 644 LYHLAG-DYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHNGE 722 (835)
T ss_pred HHHHhh-hhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred hHHHHHHHHHHH
Q 047471 522 WGDVAGARKMLK 533 (579)
Q Consensus 522 ~~~A~~~~~~~~ 533 (579)
|++|+.+++.+.
T Consensus 723 ~e~aL~~le~l~ 734 (835)
T KOG2168|consen 723 WEEALSILEHLD 734 (835)
T ss_pred HHHHHHHHHHHh
No 468
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.44 E-value=4.2e+02 Score=26.54 Aligned_cols=152 Identities=16% Similarity=0.063 Sum_probs=88.5
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCHH--------HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHH--HHHH
Q 047471 379 HANHRLGGSALKLFEQMKAT-GIKPDSV--------TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHF--TCLI 447 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~-~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~ 447 (579)
-.-.|++.+|++-+..|.+- .-.|.+. ....+...|...+.++.|..-|....+. --..|...+ ..+.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLA 411 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHH
Confidence 34568888888888888762 1123311 1122223356678888888888777664 223333332 2355
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChhhH--H------HHHHH--HHhcCCHHHHHHHHHHHHhcCC-C-----CCccHHH
Q 047471 448 DLLGRAGKLLEAEEYTKKFPLGQDPIVL--G------TLLSA--CRLRRDVVIGERLAKQLFHLQP-T-----TTSPYVL 511 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~------~l~~~--~~~~~~~~~A~~~~~~~~~~~p-~-----~~~~~~~ 511 (579)
-.|.+.|+-+.-.++++.+. .|+..++ . .++.+ ....|++.+|+..+.+.++..- . ..-....
T Consensus 412 i~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 66788888888778888774 2221111 1 11222 2457889999988888887551 1 1122345
Q ss_pred HHHHHHcCCChHHHHHHHHHH
Q 047471 512 LSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 512 l~~~~~~~g~~~~A~~~~~~~ 532 (579)
|+.+....|+..++.....-.
T Consensus 491 Ls~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHhcchHHHHhccchH
Confidence 566777788887777655433
No 469
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.20 E-value=35 Score=36.18 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=60.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 382 HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 382 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
+.++++.+.+.+...--| -.+|..+.+.|..+-|+.+.+.-..+ ......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 455666665544322211 12344456677777776655443332 223456788888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 462 YTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 462 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
.-+++. |+.+|..|+.....+|+.+-|+..|++...
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 777764 677888888888888888888888877554
No 470
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.10 E-value=3.9e+02 Score=26.05 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=44.7
Q ss_pred HhHHHHHHHhcCChHHHHHHHHccCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCCHH
Q 047471 341 GNALVNMYAKCGLISCSYKLFNEMLH------RNVVSWNTIIAAHANHRLGGSALKLFEQMKAT---------GIKPDSV 405 (579)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------~~~p~~~ 405 (579)
+.-+.+.|..+|+++.|++.|.+... .....|-.+|..-.-.|+|.....+..+.... .+.+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 34455566666777777766666421 12233444455555556666666655555442 1233334
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHh
Q 047471 406 TFIGLLTACNHAGLVKEGEAYFNSM 430 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~a~~~~~~~ 430 (579)
.+..+...+.+ ++..|.+.|-..
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhC
Confidence 44444443333 555555555444
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.78 E-value=1.9e+02 Score=23.49 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047471 373 NTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG 418 (579)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 418 (579)
..++..+.+.++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455556666666777777777777766666666555556666555
No 472
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.30 E-value=3.7e+02 Score=25.48 Aligned_cols=118 Identities=10% Similarity=0.035 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCCHHHHHHHHHHhHHHhCCCCChh-HHHHHHHHHHhcCCh
Q 047471 384 LGGSALKLFEQMKATGIKPDSVTFIGLLTACNH------AGLVKEGEAYFNSMEKTYGISPDIE-HFTCLIDLLGRAGKL 456 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 456 (579)
-.+++..++++....+. |.+......|.++.. .-+|.....+|+.+... .|++. +.|. .-+..+..-.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNR-AVAla~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNR-AVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehH-HHHHHHhhhH
Confidence 36788888988888764 888888877777542 34677888888877653 34432 2332 2234444445
Q ss_pred HHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 457 LEAEEYTKKFPLGQDP----IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 457 ~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
+.++...+.+...|.. ..+..-...+.+.|..++|...|++++.+.++..
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 6667777666434322 2222333447788999999999999999887643
No 473
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.24 E-value=71 Score=24.55 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=38.4
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 047471 7 SLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMIL 55 (579)
Q Consensus 7 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 55 (579)
.++..+...+..-.|.++++.+.+.++..+..|-...++.+...|-...
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4566666667788899999999998877777777777888888886543
No 474
>PRK02287 hypothetical protein; Provisional
Probab=37.20 E-value=2.5e+02 Score=23.54 Aligned_cols=59 Identities=22% Similarity=0.112 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDP-IVLGTLLSACRLRRDVVIGERLAKQLF 499 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 499 (579)
.+..+++.++.-.|..+.|.+++......+.- ..-..++..|....+-++..++-++.+
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 44556666666666666666666666433322 222345555555555555555444443
No 475
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.10 E-value=3e+02 Score=24.37 Aligned_cols=54 Identities=24% Similarity=0.273 Sum_probs=24.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH----HHHhcCChHHHHHHHHh
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID----LLGRAGKLLEAEEYTKK 465 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~ 465 (579)
|......|++++|.+....+... -+..|...+-.|.. -+.+.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33445556666666555555433 33333322222211 12455556666665544
No 476
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.03 E-value=4e+02 Score=25.89 Aligned_cols=53 Identities=21% Similarity=-0.002 Sum_probs=29.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHH--hccCCHHHHHHHHHH
Q 047471 377 AAHANHRLGGSALKLFEQMKATGIKPDSVTF----IGLLTAC--NHAGLVKEGEAYFNS 429 (579)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~--~~~~~~~~a~~~~~~ 429 (579)
..+.+.+++..|.++|+++.....+|+...+ ..+..+| ...-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3455667777777777777776554444332 2222222 234455666666654
No 477
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.80 E-value=37 Score=35.26 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHCCCCCCcccHH
Q 047471 179 NQQPEKGFEVFKLMLRQGLLPDRFSFA 205 (579)
Q Consensus 179 ~~~~~~a~~~~~~m~~~g~~p~~~~~~ 205 (579)
.|++.+|.+.+-.+...++.|...-..
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp ---------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 355666666655555555555544443
No 478
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=35.54 E-value=67 Score=24.95 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=38.7
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 047471 6 SSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMIL 55 (579)
Q Consensus 6 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 55 (579)
..++..+...+..-.|.++++.+.+.++..+..|-..-++.+...|-...
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 35677777888899999999999999888888877777899988885543
No 479
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=35.35 E-value=2.9e+02 Score=26.80 Aligned_cols=135 Identities=7% Similarity=0.004 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHH--------HHHHhcCChHHHHHHHHhCC-------
Q 047471 403 DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLI--------DLLGRAGKLLEAEEYTKKFP------- 467 (579)
Q Consensus 403 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~g~~~~A~~~~~~~~------- 467 (579)
+...+-.++-.+..+.++.+|.++-+..... -..-+..++..+. ..|-..|+...-..++....
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~-i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLAS-ISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 468 -LGQDPIVLGTLLSACRLRRDVVIGERLAKQLF----HLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 468 -~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
........+.++..|...+.++.|..+..+.. ..+..-+...+.++.+.+-++++..|.+.+-....+.+.
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
No 480
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.22 E-value=51 Score=30.21 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=34.2
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ 470 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 470 (579)
..+.|+.++|..+|+.+... -+.++.....+.......++.-+|-..+-+. ...|
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL--APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 35789999999999998852 2334444444444444456666676665554 4445
No 481
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.92 E-value=1.5e+02 Score=29.02 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCC-----------CCCcchHHHHHHHHHhCCCcchHHHHHHHHH
Q 047471 137 VGNSLISMYMKVGYSSDALLVYGEAF-----------EPNLVSFNALIAGFVENQQPEKGFEVFKLML 193 (579)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 193 (579)
+...|++.++-.||+..|+++++.+. .-.+.+|--+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888899999999999987753 2344566677778888999999999998864
No 482
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.79 E-value=3.7e+02 Score=24.80 Aligned_cols=116 Identities=16% Similarity=0.014 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----
Q 047471 384 LGGSALKLFEQMKATGIKPDSVTFIGLLTACNHA-------GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR---- 452 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 452 (579)
+..+|...+++..+.|..+...+...+...+... -+...|...+.++... + +......+...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCC
Confidence 6677777777777776544322222232233222 1233677777777664 3 34444445544433
Q ss_pred cCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHhcCCC
Q 047471 453 AGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRR---------------DVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 453 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~---------------~~~~A~~~~~~~~~~~p~ 504 (579)
..+.++|..+|.+....-+......+. .+...| +...|...+.......+.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 346777887777763223322222222 334333 556666666666655543
No 483
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.69 E-value=3.3e+02 Score=24.27 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=27.3
Q ss_pred ccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047471 363 EMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDS 404 (579)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 404 (579)
-.-+|.+.....++..|. .+++++|.++++++.+.|..|..
T Consensus 233 v~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 233 VCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred ccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 334566666666665544 45678888888888888877653
No 484
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.65 E-value=1.3e+02 Score=21.99 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCCh
Q 047471 21 GISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEH 84 (579)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 84 (579)
...++..+.+.|+ .+.. ..-...+..-+.+.+.++++.++..+..+|..+..++-..+..
T Consensus 22 ~~~v~~~L~~~gv-lt~~---~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDI-LTDS---MAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCC-CCHH---HHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 4467777777775 2222 2223334445678889999998888999999999888765543
No 485
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.30 E-value=1.5e+02 Score=22.08 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=21.3
Q ss_pred HHHHHHHhcC-CCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 493 RLAKQLFHLQ-PTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 493 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
+.++++...+ +--|....+|+.+|.+.|+-+.|.+-|+.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3344444333 33345555666666666666666665554
No 486
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.12 E-value=1.5e+02 Score=29.12 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=31.0
Q ss_pred HHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 461 EYTKKFPLGQDP--IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 461 ~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
.+|....++|.. .++...+..+.+.+++..|-.+.++++++.|..
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 345555555543 456777777889999999999999999998863
No 487
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.84 E-value=88 Score=18.43 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.+|..|+.+-...+++++|.+=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888887776643
No 488
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.45 E-value=6.9e+02 Score=27.55 Aligned_cols=40 Identities=8% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhc
Q 047471 173 IAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICS 212 (579)
Q Consensus 173 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 212 (579)
+-.|......+-+...++.+....-.++..-.+.++..|+
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3455666777788888888876655566666666665554
No 489
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.17 E-value=3.8e+02 Score=24.43 Aligned_cols=168 Identities=9% Similarity=0.010 Sum_probs=96.7
Q ss_pred HHhcCChHHHHHHHHccCCCChhhHHH---HHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-H
Q 047471 348 YAKCGLISCSYKLFNEMLHRNVVSWNT---IIAAHAN-HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVK-E 422 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~ 422 (579)
+.+..+.+.|.++-+..+.-++..|+. -...+.. ..+..+-++.+++..+.. +-|-..|..-=......|++. .
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccc
Confidence 445667788888888876544443332 1111111 134566677788877763 335444433222233445655 6
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHh-cC-----CHHHHHHH
Q 047471 423 GEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRL-RR-----DVVIGERL 494 (579)
Q Consensus 423 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~-~~-----~~~~A~~~ 494 (579)
-+++.+.|.. +-..+-..|..=-.++..-+.++.-+.+..++- ..-+...|+.-.-.... .| ..+.-+.+
T Consensus 132 ELef~~~~l~--~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 132 ELEFTKLMLD--DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred hHHHHHHHHh--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 6777788876 444455556555555666677888777777762 22344555532222111 22 22334456
Q ss_pred HHHHHhcCCCCCccHHHHHHHHHc
Q 047471 495 AKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 495 ~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
..+.+..-|+|.++|..|..++..
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHh
Confidence 777888899999999988877654
No 490
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.07 E-value=3.4e+02 Score=23.86 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 047471 446 LIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~ 466 (579)
+.....+.|+.++|.++|.++
T Consensus 171 igeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 344445556666666655554
No 491
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.34 E-value=1.8e+02 Score=20.58 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=6.1
Q ss_pred HHHHHHHHCCCCCCc
Q 047471 187 EVFKLMLRQGLLPDR 201 (579)
Q Consensus 187 ~~~~~m~~~g~~p~~ 201 (579)
++++.+.+.|..++.
T Consensus 40 ~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 40 EIVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHHTTTCTT-
T ss_pred HHHHHHHHhcccccc
Confidence 334444444444443
No 492
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.78 E-value=2.1e+02 Score=24.03 Aligned_cols=59 Identities=7% Similarity=0.033 Sum_probs=29.7
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047471 396 KATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 396 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
.+.|++++..-. .++..+...++.-.|.++++.+.+. +..++..|...-++.+...|-.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 344555554433 2233333334455566666666554 4445555555555555555543
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.42 E-value=1.3e+02 Score=21.68 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccC
Q 047471 23 SLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMS 64 (579)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 64 (579)
++|+.....|+..|..+|..+++.+.-+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788988999999999999999998887777788888887775
No 494
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.19 E-value=1.3e+02 Score=27.80 Aligned_cols=68 Identities=4% Similarity=-0.107 Sum_probs=55.6
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHH-HHHHHHcCCChHHHHHHHHHHHhC
Q 047471 468 LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVL-LSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
...|+..|...+....+.|-+.+...++.++++..|.|...|.. -..-|...++++.++.++.+-...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 34578888888887788889999999999999999999998876 555677788999888888765443
No 495
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.78 E-value=6.1e+02 Score=26.11 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=52.7
Q ss_pred ChhHHHHH---HHHHHhcCChHHHHHHHHhC-CCCC--ChhhHHHHHHHH-HhcCCHHHHHHHHHHHHhcC-----CCCC
Q 047471 439 DIEHFTCL---IDLLGRAGKLLEAEEYTKKF-PLGQ--DPIVLGTLLSAC-RLRRDVVIGERLAKQLFHLQ-----PTTT 506 (579)
Q Consensus 439 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~-----p~~~ 506 (579)
|...|-+| +..+.+.|.+..|.++.+-+ ...| ||.....+|..| .+.+++..-+++++.....+ |+ -
T Consensus 338 NR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~ 416 (665)
T KOG2422|consen 338 NRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-F 416 (665)
T ss_pred hHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-c
Confidence 34444444 34556789999999888776 4445 566666777765 45778888888888774433 43 3
Q ss_pred ccHHHHHHHHHcCCC
Q 047471 507 SPYVLLSNLYASDGM 521 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~ 521 (579)
..-..++..|.+...
T Consensus 417 ~yS~AlA~f~l~~~~ 431 (665)
T KOG2422|consen 417 GYSLALARFFLRKNE 431 (665)
T ss_pred hHHHHHHHHHHhcCC
Confidence 444456666666554
No 496
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=30.49 E-value=1.1e+02 Score=17.31 Aligned_cols=26 Identities=4% Similarity=0.227 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
.++.|..+|++.+..-|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 456777777777776654 55554443
No 497
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=30.29 E-value=8.2e+02 Score=27.41 Aligned_cols=268 Identities=10% Similarity=-0.051 Sum_probs=150.1
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCC
Q 047471 156 LVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESN 235 (579)
Q Consensus 156 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 235 (579)
.+.+.+..+|...-...+..+.+.+.. ++...+....+. ++...-...+.++...+........+....+. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 344444566666666666676666653 354545455432 33333334444444333222222233333332 56
Q ss_pred hhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhC
Q 047471 236 PFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAG 315 (579)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 315 (579)
..+-...+..+...+.. ....+...+.++|...-...+.++.+.+..+. +..... .++...-.....++..
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIAVAKGLAT 768 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHHHHHHHHH
Confidence 66666666666654422 23345566677777777777777777655432 222322 3455555666666666
Q ss_pred cCChHH-HHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHH-HccCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047471 316 LASVQH-GKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLF-NEMLHRNVVSWNTIIAAHANHRLGGSALKLFE 393 (579)
Q Consensus 316 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (579)
.+..+. +...+..+.+ .+++.+-...+.++.+.|..+.+...+ ..+..++...-...+.++...+. +++...+-
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 665433 2333444333 456777778888888888876654433 44456677677777888887775 45666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 394 QMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 394 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
.+.+ .|+...-...+.++.+...-..+...+..+.+. +|..+-.....++
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D----~d~~Vr~~A~~aL 894 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD----SDADVRAYARRAL 894 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC----CCHHHHHHHHHHH
Confidence 6665 456666666667777754345677777777653 4554444444443
No 498
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.13 E-value=35 Score=26.97 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA 413 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 413 (579)
...|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4456778899999999999998874 4455544
No 499
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.91 E-value=1.8e+02 Score=26.32 Aligned_cols=50 Identities=18% Similarity=-0.031 Sum_probs=27.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047471 445 CLIDLLGRAGKLLEAEEYTKKFP--------LGQDPIVLGTLLSACRLRRDVVIGERL 494 (579)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~A~~~ 494 (579)
.+..-|.+.|++++|.++|+.+. ..+...+...+..+....|+.+..+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45566777777777777777652 111223333444444455555555444
No 500
>PRK14700 recombination factor protein RarA; Provisional
Probab=29.44 E-value=4.7e+02 Score=24.39 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=34.5
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcC
Q 047471 270 WNTFIAACSH---CADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLA 317 (579)
Q Consensus 270 ~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 317 (579)
+-.+++++.+ -.|++.|+-++-+|.+. |-.|....-..++.+.-..|
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~-GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDN-GVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc
Confidence 3344555544 46889999999999998 88888877777777766555
Done!