Query 047471
Match_columns 579
No_of_seqs 591 out of 3234
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 20:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.7E-41 9.2E-46 350.6 37.7 480 46-535 62-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-40 7.8E-45 343.6 29.7 478 35-518 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.6E-31 225.2 39.1 370 108-521 7-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 7.9E-28 2.7E-32 238.5 24.2 183 268-452 27-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 9.8E-26 3.4E-30 220.2 37.3 351 174-535 7-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.3E-27 4.5E-32 237.0 18.6 191 204-417 29-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.8E-24 1.3E-28 217.4 34.4 226 305-535 239-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 8.4E-24 2.9E-28 214.8 34.1 438 69-512 7-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 5.3E-23 1.8E-27 210.2 32.0 417 69-534 26-490 (537)
10 3fp2_A TPR repeat-containing p 99.9 3.8E-22 1.3E-26 203.8 30.9 441 2-510 25-500 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.2E-21 7.5E-26 193.5 31.9 100 411-513 264-370 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 2.1E-21 7.2E-26 193.6 31.4 307 164-479 24-370 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 4.6E-19 1.6E-23 170.7 30.1 289 241-535 8-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.5E-19 2.9E-23 168.8 30.4 310 166-519 3-353 (359)
15 3hym_B Cell division cycle pro 99.8 1.4E-18 4.7E-23 165.3 29.2 286 233-522 19-321 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 7.2E-16 2.5E-20 162.1 46.2 465 6-530 843-1340(1630)
17 3hym_B Cell division cycle pro 99.8 5.3E-18 1.8E-22 161.3 27.5 265 265-535 20-299 (330)
18 1b89_A Protein (clathrin heavy 99.8 6.8E-19 2.3E-23 166.1 20.2 220 49-294 15-234 (449)
19 1xi4_A Clathrin heavy chain; a 99.8 6.1E-15 2.1E-19 155.3 51.2 415 4-466 987-1442(1630)
20 2xm6_A Protein corresponding t 99.8 5.8E-17 2E-21 162.9 34.4 351 148-518 56-452 (490)
21 1fch_A Peroxisomal targeting s 99.8 2.8E-18 9.7E-23 165.9 22.8 282 246-532 35-356 (368)
22 2ooe_A Cleavage stimulation fa 99.8 7.3E-16 2.5E-20 156.5 40.0 412 99-535 12-492 (530)
23 2xm6_A Protein corresponding t 99.8 9.1E-16 3.1E-20 154.2 37.4 352 164-537 37-434 (490)
24 1b89_A Protein (clathrin heavy 99.8 1.2E-17 4.2E-22 157.6 22.0 288 147-466 15-308 (449)
25 4eqf_A PEX5-related protein; a 99.8 6.7E-18 2.3E-22 163.1 20.5 261 266-531 64-352 (365)
26 3mkr_A Coatomer subunit epsilo 99.8 1.9E-16 6.6E-21 146.6 28.1 271 243-528 6-287 (291)
27 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4.1E-20 154.9 36.4 429 25-504 2-495 (530)
28 3cv0_A Peroxisome targeting si 99.8 3.3E-17 1.1E-21 155.5 21.3 258 269-532 23-312 (327)
29 1fch_A Peroxisomal targeting s 99.8 2.6E-17 8.9E-22 159.2 20.8 276 251-536 16-315 (368)
30 4g1t_A Interferon-induced prot 99.8 1.9E-16 6.3E-21 158.8 26.5 366 134-546 50-470 (472)
31 4eqf_A PEX5-related protein; a 99.7 3.4E-17 1.2E-21 158.2 18.3 232 302-536 64-311 (365)
32 3mkr_A Coatomer subunit epsilo 99.7 8.7E-17 3E-21 148.9 19.9 247 274-536 6-265 (291)
33 4g1t_A Interferon-induced prot 99.7 8.4E-15 2.9E-19 146.7 28.0 234 249-513 226-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 4.9E-16 1.7E-20 147.4 18.0 259 239-503 24-317 (327)
35 3uq3_A Heat shock protein STI1 99.7 2E-15 6.8E-20 137.8 20.2 218 305-535 7-236 (258)
36 2pl2_A Hypothetical conserved 99.7 2E-15 6.9E-20 133.5 18.6 194 335-532 2-211 (217)
37 3uq3_A Heat shock protein STI1 99.7 3.8E-15 1.3E-19 135.9 17.6 234 268-515 6-256 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 1.9E-16 6.5E-21 161.5 9.1 118 338-456 127-252 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.7E-15 3.3E-19 134.6 19.9 242 279-529 17-269 (275)
40 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-13 4E-18 136.6 28.3 380 107-534 10-420 (452)
41 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-13 4E-18 136.6 27.6 184 7-196 8-209 (452)
42 3u4t_A TPR repeat-containing p 99.6 2.2E-14 7.7E-19 132.0 21.0 241 272-520 8-269 (272)
43 3spa_A Mtrpol, DNA-directed RN 99.6 2.5E-16 8.5E-21 160.6 5.2 149 268-454 128-286 (1134)
44 1ouv_A Conserved hypothetical 99.6 5E-13 1.7E-17 122.9 24.9 217 308-536 11-252 (273)
45 2q7f_A YRRB protein; TPR, prot 99.6 3.2E-14 1.1E-18 128.4 16.4 140 371-513 93-234 (243)
46 2ho1_A Type 4 fimbrial biogene 99.6 4.2E-13 1.4E-17 121.9 23.0 161 372-534 74-237 (252)
47 3u4t_A TPR repeat-containing p 99.6 2E-13 6.9E-18 125.5 20.7 228 305-536 5-251 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.6E-18 123.3 21.0 205 303-510 37-247 (252)
49 2vq2_A PILW, putative fimbrial 99.6 2.7E-13 9.2E-18 120.6 20.8 196 338-535 8-211 (225)
50 2q7f_A YRRB protein; TPR, prot 99.6 7.2E-14 2.5E-18 126.1 16.8 197 337-536 22-223 (243)
51 2h6f_A Protein farnesyltransfe 99.6 3.9E-13 1.3E-17 128.6 21.8 244 268-518 98-365 (382)
52 2vq2_A PILW, putative fimbrial 99.6 7.9E-13 2.7E-17 117.6 22.6 206 304-512 9-222 (225)
53 2pl2_A Hypothetical conserved 99.5 4.4E-13 1.5E-17 118.4 19.8 192 268-466 6-211 (217)
54 3vtx_A MAMA; tetratricopeptide 99.5 3.9E-13 1.3E-17 115.5 18.9 165 368-536 4-171 (184)
55 1ouv_A Conserved hypothetical 99.5 2.1E-12 7.2E-17 118.8 23.6 225 267-505 6-255 (273)
56 2h6f_A Protein farnesyltransfe 99.5 3.4E-13 1.2E-17 129.0 18.7 227 304-535 98-348 (382)
57 4a1s_A PINS, partner of inscut 99.5 1.2E-13 4E-18 135.6 15.4 260 272-534 53-371 (411)
58 4abn_A Tetratricopeptide repea 99.5 1.4E-13 4.9E-18 136.9 15.2 191 337-531 101-317 (474)
59 3sf4_A G-protein-signaling mod 99.5 2.5E-13 8.6E-18 132.9 16.6 271 235-505 8-340 (406)
60 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.9E-13 1.3E-17 123.8 16.3 219 314-536 16-245 (275)
61 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6E-18 130.1 14.5 261 272-535 10-332 (338)
62 4e6h_A MRNA 3'-END-processing 99.5 2E-10 6.7E-15 117.4 34.0 411 66-506 64-575 (679)
63 3sf4_A G-protein-signaling mod 99.5 4.6E-13 1.6E-17 131.0 13.6 263 204-466 12-333 (406)
64 3vtx_A MAMA; tetratricopeptide 99.4 5.9E-12 2E-16 108.0 17.2 167 337-506 4-175 (184)
65 4a1s_A PINS, partner of inscut 99.4 2E-12 6.7E-17 126.8 15.0 264 241-504 53-375 (411)
66 4gyw_A UDP-N-acetylglucosamine 99.4 3.1E-12 1.1E-16 132.3 16.6 162 369-534 9-173 (723)
67 2ond_A Cleavage stimulation fa 99.4 6.5E-11 2.2E-15 110.7 24.2 220 284-508 33-277 (308)
68 3ulq_A Response regulator aspa 99.4 3.1E-12 1E-16 124.1 15.1 223 311-534 111-367 (383)
69 3nf1_A KLC 1, kinesin light ch 99.4 5.3E-13 1.8E-17 125.3 8.7 236 268-534 28-306 (311)
70 2ond_A Cleavage stimulation fa 99.4 3.5E-11 1.2E-15 112.6 20.8 213 320-537 33-272 (308)
71 3as5_A MAMA; tetratricopeptide 99.4 5.3E-12 1.8E-16 108.3 13.9 161 372-535 11-173 (186)
72 3ulq_A Response regulator aspa 99.4 5.5E-11 1.9E-15 115.2 21.4 231 273-503 109-370 (383)
73 3ro2_A PINS homolog, G-protein 99.4 8.8E-12 3E-16 118.2 15.2 134 371-504 185-335 (338)
74 4e6h_A MRNA 3'-END-processing 99.4 1.5E-09 5.2E-14 110.8 32.0 428 89-537 54-572 (679)
75 1hz4_A MALT regulatory protein 99.3 8.5E-10 2.9E-14 106.4 28.7 259 275-534 22-321 (373)
76 4i17_A Hypothetical protein; T 99.3 6.9E-11 2.4E-15 105.3 19.2 205 301-517 5-225 (228)
77 4i17_A Hypothetical protein; T 99.3 2.9E-11 1E-15 107.7 16.0 188 337-535 6-209 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.1E-15 99.1 18.4 168 339-509 9-181 (186)
79 3nf1_A KLC 1, kinesin light ch 99.3 7.7E-12 2.6E-16 117.3 10.8 246 235-504 26-310 (311)
80 4abn_A Tetratricopeptide repea 99.3 1.1E-10 3.8E-15 116.0 18.8 208 283-496 84-316 (474)
81 3q15_A PSP28, response regulat 99.3 8E-11 2.7E-15 113.8 17.2 222 312-534 110-364 (378)
82 3q15_A PSP28, response regulat 99.3 1.1E-09 3.9E-14 105.7 24.7 231 272-502 106-366 (378)
83 1qqe_A Vesicular transport pro 99.2 2.1E-10 7.1E-15 106.3 16.4 200 318-532 32-266 (292)
84 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.5E-09 8.7E-14 94.7 19.5 180 340-538 6-216 (225)
85 3edt_B KLC 2, kinesin light ch 99.2 9.5E-11 3.3E-15 108.0 10.5 164 371-534 87-280 (283)
86 4gyw_A UDP-N-acetylglucosamine 99.2 2.4E-10 8.4E-15 118.2 14.2 163 337-503 8-176 (723)
87 4ga2_A E3 SUMO-protein ligase 99.2 3.5E-11 1.2E-15 98.9 6.2 143 375-521 3-149 (150)
88 1hz4_A MALT regulatory protein 99.1 2E-08 6.9E-13 96.7 24.8 61 271-331 139-202 (373)
89 2fo7_A Synthetic consensus TPR 99.1 1.4E-09 4.7E-14 87.4 14.0 125 409-535 6-132 (136)
90 3qky_A Outer membrane assembly 99.1 2.7E-09 9.3E-14 97.0 17.5 183 337-536 14-225 (261)
91 3mv2_B Coatomer subunit epsilo 99.1 7.1E-09 2.4E-13 93.9 19.3 241 245-508 22-289 (310)
92 3qky_A Outer membrane assembly 99.1 8.5E-10 2.9E-14 100.4 13.4 201 301-523 13-249 (261)
93 3mv2_B Coatomer subunit epsilo 99.1 7.6E-09 2.6E-13 93.7 19.3 240 274-536 20-283 (310)
94 1qqe_A Vesicular transport pro 99.1 1.4E-09 4.6E-14 100.8 14.0 196 313-508 47-276 (292)
95 3edt_B KLC 2, kinesin light ch 99.1 3.4E-09 1.2E-13 97.5 15.5 198 305-502 45-282 (283)
96 2fo7_A Synthetic consensus TPR 99.0 7.3E-09 2.5E-13 83.0 15.3 132 371-505 3-136 (136)
97 2pzi_A Probable serine/threoni 99.0 1.5E-09 5.2E-14 112.8 14.0 165 314-484 402-580 (681)
98 3rjv_A Putative SEL1 repeat pr 99.0 1.9E-08 6.6E-13 87.9 18.5 162 367-537 16-199 (212)
99 3qou_A Protein YBBN; thioredox 99.0 6.4E-09 2.2E-13 95.8 15.2 174 355-533 103-282 (287)
100 4ga2_A E3 SUMO-protein ligase 99.0 3.7E-10 1.3E-14 92.7 4.7 124 410-535 3-129 (150)
101 2vsy_A XCC0866; transferase, g 99.0 7.2E-09 2.5E-13 105.9 15.3 160 351-513 2-169 (568)
102 2uy1_A Cleavage stimulation fa 98.9 8.4E-07 2.9E-11 88.0 28.6 362 84-500 11-412 (493)
103 2r5s_A Uncharacterized protein 98.9 7.1E-09 2.4E-13 87.8 11.6 156 374-534 11-172 (176)
104 3urz_A Uncharacterized protein 98.9 2.1E-08 7E-13 87.5 14.6 127 374-505 59-190 (208)
105 3gyz_A Chaperone protein IPGC; 98.9 5.9E-09 2E-13 85.0 10.2 98 439-536 35-134 (151)
106 4gco_A Protein STI-1; structur 98.9 9.2E-09 3.1E-13 81.3 11.0 109 405-515 14-124 (126)
107 2ifu_A Gamma-SNAP; membrane fu 98.9 4.9E-08 1.7E-12 91.0 17.7 219 279-527 3-253 (307)
108 2vsy_A XCC0866; transferase, g 98.9 5.3E-08 1.8E-12 99.5 18.8 147 316-466 2-154 (568)
109 2pzi_A Probable serine/threoni 98.9 6.6E-08 2.3E-12 100.6 18.8 149 278-431 402-561 (681)
110 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.4E-08 2.2E-12 85.6 15.6 186 302-508 3-220 (225)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.8 6.6E-08 2.3E-12 84.7 15.2 130 370-505 7-154 (213)
112 3urz_A Uncharacterized protein 98.8 2.7E-08 9.3E-13 86.7 12.2 157 375-536 10-187 (208)
113 2vgx_A Chaperone SYCD; alterna 98.8 7.1E-09 2.4E-13 84.7 7.9 96 440-535 21-118 (148)
114 2r5s_A Uncharacterized protein 98.8 5.8E-08 2E-12 82.1 13.7 156 341-500 9-172 (176)
115 3dra_A Protein farnesyltransfe 98.8 4.2E-06 1.4E-10 76.6 26.7 226 282-514 48-301 (306)
116 3dra_A Protein farnesyltransfe 98.8 7.6E-07 2.6E-11 81.5 21.7 214 317-534 47-286 (306)
117 4gco_A Protein STI-1; structur 98.8 3E-08 1E-12 78.3 10.6 96 440-535 13-110 (126)
118 1a17_A Serine/threonine protei 98.8 7.3E-08 2.5E-12 80.4 12.8 126 406-533 15-144 (166)
119 3u3w_A Transcriptional activat 98.8 5.8E-07 2E-11 83.1 19.8 160 375-534 81-265 (293)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.9E-07 9.8E-12 80.5 16.8 129 341-472 9-154 (213)
121 3qou_A Protein YBBN; thioredox 98.8 2.8E-07 9.5E-12 84.8 17.1 162 302-465 116-280 (287)
122 3rjv_A Putative SEL1 repeat pr 98.8 4.5E-07 1.5E-11 79.1 17.4 173 322-504 5-200 (212)
123 2lni_A Stress-induced-phosphop 98.8 7.5E-08 2.6E-12 76.9 11.4 116 404-521 16-133 (133)
124 2c2l_A CHIP, carboxy terminus 98.8 1.7E-08 5.8E-13 92.6 8.5 191 338-535 4-199 (281)
125 2e2e_A Formate-dependent nitri 98.7 2.7E-08 9.3E-13 84.3 8.9 125 380-507 21-150 (177)
126 1na0_A Designed protein CTPR3; 98.7 1.2E-07 4.2E-12 74.5 12.2 115 404-520 9-125 (125)
127 2qfc_A PLCR protein; TPR, HTH, 98.7 2.4E-07 8.3E-12 85.6 15.7 162 372-533 78-264 (293)
128 2vyi_A SGTA protein; chaperone 98.7 9.2E-08 3.1E-12 76.0 11.2 117 404-522 12-130 (131)
129 2ifu_A Gamma-SNAP; membrane fu 98.7 1E-07 3.5E-12 88.8 12.9 197 315-533 3-222 (307)
130 2xcb_A PCRH, regulatory protei 98.7 4.3E-08 1.5E-12 79.5 8.9 95 441-535 19-115 (142)
131 3gyz_A Chaperone protein IPGC; 98.7 1.7E-07 5.9E-12 76.3 12.1 105 400-506 31-138 (151)
132 2uy1_A Cleavage stimulation fa 98.7 1.3E-05 4.4E-10 79.5 27.5 45 185-230 198-242 (493)
133 1p5q_A FKBP52, FK506-binding p 98.7 1.2E-07 4E-12 89.5 12.0 94 440-533 196-292 (336)
134 2kck_A TPR repeat; tetratricop 98.7 1.3E-07 4.3E-12 72.8 10.0 100 439-538 5-109 (112)
135 2vgx_A Chaperone SYCD; alterna 98.7 1.1E-07 3.7E-12 77.6 9.9 116 391-510 9-127 (148)
136 3upv_A Heat shock protein STI1 98.7 1.3E-07 4.5E-12 74.8 9.8 95 441-535 5-101 (126)
137 3u3w_A Transcriptional activat 98.6 1.3E-05 4.5E-10 73.8 23.5 160 272-431 80-264 (293)
138 4f3v_A ESX-1 secretion system 98.6 7.8E-08 2.7E-12 85.9 7.9 136 373-513 106-248 (282)
139 1hxi_A PEX5, peroxisome target 98.6 1.3E-07 4.4E-12 74.1 8.1 95 442-536 19-115 (121)
140 2e2e_A Formate-dependent nitri 98.6 2.9E-07 1E-11 77.8 10.9 123 414-538 20-147 (177)
141 1elw_A TPR1-domain of HOP; HOP 98.6 6.9E-07 2.4E-11 69.2 12.3 108 406-515 6-115 (118)
142 2qfc_A PLCR protein; TPR, HTH, 98.6 1.8E-06 6.1E-11 79.8 16.6 161 341-501 78-266 (293)
143 2fbn_A 70 kDa peptidylprolyl i 98.6 3.3E-07 1.1E-11 79.1 10.9 96 441-536 89-187 (198)
144 4gcn_A Protein STI-1; structur 98.6 1.6E-07 5.5E-12 74.3 8.1 93 442-534 10-111 (127)
145 3q49_B STIP1 homology and U bo 98.6 4.8E-07 1.7E-11 72.6 11.2 98 438-535 7-106 (137)
146 4f3v_A ESX-1 secretion system 98.6 6.7E-07 2.3E-11 79.9 12.6 183 350-537 18-239 (282)
147 3sz7_A HSC70 cochaperone (SGT) 98.5 3.3E-07 1.1E-11 76.3 9.8 111 403-515 10-122 (164)
148 2xcb_A PCRH, regulatory protei 98.5 4.7E-07 1.6E-11 73.3 10.2 108 405-514 19-128 (142)
149 1elw_A TPR1-domain of HOP; HOP 98.5 7.1E-07 2.4E-11 69.2 10.9 98 439-536 3-102 (118)
150 3upv_A Heat shock protein STI1 98.5 6E-07 2E-11 70.9 10.4 110 405-516 5-122 (126)
151 3gw4_A Uncharacterized protein 98.5 3.4E-06 1.1E-10 72.9 15.7 95 407-501 69-176 (203)
152 3sz7_A HSC70 cochaperone (SGT) 98.5 9.7E-07 3.3E-11 73.4 11.7 95 369-466 11-105 (164)
153 2lni_A Stress-induced-phosphop 98.5 7.4E-07 2.5E-11 70.9 10.4 99 437-535 13-113 (133)
154 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.5E-11 74.9 13.0 130 404-533 26-174 (203)
155 2dba_A Smooth muscle cell asso 98.5 2.4E-06 8.1E-11 69.4 13.3 112 404-518 28-145 (148)
156 1na0_A Designed protein CTPR3; 98.5 1.1E-06 3.8E-11 68.9 10.7 96 440-535 9-106 (125)
157 2dba_A Smooth muscle cell asso 98.5 1.2E-06 4.1E-11 71.2 11.1 98 438-535 26-128 (148)
158 1a17_A Serine/threonine protei 98.4 3.5E-06 1.2E-10 70.0 13.7 128 370-500 14-145 (166)
159 3q7a_A Farnesyltransferase alp 98.4 9.5E-05 3.3E-09 68.4 24.0 227 277-510 64-341 (349)
160 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.2E-06 7.7E-11 84.4 13.6 96 440-535 317-415 (457)
161 2xev_A YBGF; tetratricopeptide 98.4 1E-06 3.6E-11 69.7 9.3 88 447-534 9-104 (129)
162 3q49_B STIP1 homology and U bo 98.4 1.4E-06 4.6E-11 69.9 10.1 100 403-504 8-109 (137)
163 2vyi_A SGTA protein; chaperone 98.4 1.6E-06 5.5E-11 68.5 10.2 98 439-536 11-110 (131)
164 3q7a_A Farnesyltransferase alp 98.4 3E-05 1E-09 71.8 19.3 216 316-535 67-331 (349)
165 2hr2_A Hypothetical protein; a 98.4 1.1E-06 3.7E-11 70.8 8.3 61 474-534 59-130 (159)
166 4gcn_A Protein STI-1; structur 98.3 2.4E-06 8E-11 67.4 9.4 105 371-504 10-115 (127)
167 2kck_A TPR repeat; tetratricop 98.3 4E-06 1.4E-10 64.1 10.5 100 405-506 7-111 (112)
168 1wao_1 Serine/threonine protei 98.3 1.1E-06 3.7E-11 87.1 9.0 118 412-531 14-135 (477)
169 3k9i_A BH0479 protein; putativ 98.3 4.9E-07 1.7E-11 70.3 4.8 83 453-535 3-90 (117)
170 2if4_A ATFKBP42; FKBP-like, al 98.3 1.6E-06 5.6E-11 81.6 9.2 149 369-537 179-330 (338)
171 1elr_A TPR2A-domain of HOP; HO 98.3 1.5E-06 5.2E-11 68.8 7.7 107 407-516 7-122 (131)
172 2xev_A YBGF; tetratricopeptide 98.3 6.2E-06 2.1E-10 65.1 11.2 102 410-513 8-117 (129)
173 1wao_1 Serine/threonine protei 98.3 5.6E-06 1.9E-10 81.9 13.2 116 346-464 14-134 (477)
174 1hxi_A PEX5, peroxisome target 98.3 3.8E-06 1.3E-10 65.6 9.4 97 408-506 21-119 (121)
175 3dss_A Geranylgeranyl transfer 98.3 0.00013 4.4E-09 67.2 20.9 48 487-534 253-303 (331)
176 3rkv_A Putative peptidylprolyl 98.3 2.3E-06 7.8E-11 71.0 8.6 62 473-534 64-125 (162)
177 3dss_A Geranylgeranyl transfer 98.3 0.00016 5.6E-09 66.5 21.4 230 279-516 41-319 (331)
178 1p5q_A FKBP52, FK506-binding p 98.3 1E-05 3.5E-10 76.1 13.7 146 353-500 128-293 (336)
179 4b4t_Q 26S proteasome regulato 98.3 1E-05 3.5E-10 79.4 14.3 163 372-534 58-244 (434)
180 1elr_A TPR2A-domain of HOP; HO 98.3 2.9E-06 9.9E-11 67.1 8.4 96 440-535 4-108 (131)
181 2fbn_A 70 kDa peptidylprolyl i 98.3 5.4E-07 1.8E-11 77.7 4.3 95 441-535 39-151 (198)
182 2c2l_A CHIP, carboxy terminus 98.2 5.8E-06 2E-10 75.6 11.1 113 403-517 3-117 (281)
183 1ihg_A Cyclophilin 40; ppiase 98.2 4.3E-06 1.5E-10 79.6 10.3 90 439-528 272-363 (370)
184 3ro3_A PINS homolog, G-protein 98.2 3.9E-06 1.3E-10 69.3 8.3 61 474-534 91-157 (164)
185 2if4_A ATFKBP42; FKBP-like, al 98.2 5.4E-06 1.8E-10 78.1 10.1 152 339-507 180-334 (338)
186 3rkv_A Putative peptidylprolyl 98.2 2.9E-06 9.9E-11 70.3 7.1 78 439-516 62-142 (162)
187 1dce_A Protein (RAB geranylger 98.2 7.5E-05 2.6E-09 75.2 18.7 169 353-524 44-244 (567)
188 4b4t_Q 26S proteasome regulato 98.2 0.00067 2.3E-08 66.3 24.6 190 244-433 12-245 (434)
189 2hr2_A Hypothetical protein; a 98.1 5.9E-06 2E-10 66.4 7.6 74 442-515 59-145 (159)
190 3k9i_A BH0479 protein; putativ 98.1 1.3E-06 4.5E-11 67.8 3.7 91 417-508 3-97 (117)
191 3ma5_A Tetratricopeptide repea 98.1 1.3E-05 4.3E-10 60.0 8.3 65 471-535 6-70 (100)
192 2l6j_A TPR repeat-containing p 98.1 8.6E-07 3E-11 68.0 1.8 93 439-531 3-103 (111)
193 3ro3_A PINS homolog, G-protein 98.1 2.2E-05 7.4E-10 64.6 10.5 133 371-503 11-160 (164)
194 3lvg_A Clathrin heavy chain 1; 98.1 2.6E-05 9.1E-10 73.2 11.1 237 36-288 53-325 (624)
195 3bee_A Putative YFRE protein; 98.0 2.7E-05 9.1E-10 56.9 8.6 70 469-538 3-75 (93)
196 3n71_A Histone lysine methyltr 98.0 1.4E-05 4.8E-10 78.5 9.1 124 414-537 319-466 (490)
197 1na3_A Designed protein CTPR2; 98.0 2.1E-05 7.3E-10 57.3 7.6 81 440-520 9-91 (91)
198 2kat_A Uncharacterized protein 98.0 1.9E-05 6.5E-10 60.8 7.3 64 471-534 18-81 (115)
199 1ihg_A Cyclophilin 40; ppiase 97.9 3E-05 1E-09 73.8 8.8 113 404-535 223-336 (370)
200 1klx_A Cysteine rich protein B 97.8 0.00012 4.1E-09 58.4 10.4 86 449-536 34-127 (138)
201 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.0002 6.7E-09 70.5 13.6 129 369-499 268-413 (457)
202 1zu2_A Mitochondrial import re 97.8 1.1E-05 3.6E-10 64.8 3.0 96 417-536 15-121 (158)
203 2l6j_A TPR repeat-containing p 97.8 6.6E-05 2.2E-09 57.1 7.5 66 471-536 3-68 (111)
204 3n71_A Histone lysine methyltr 97.7 7.5E-05 2.6E-09 73.3 8.6 111 448-576 317-445 (490)
205 1dce_A Protein (RAB geranylger 97.7 0.00036 1.2E-08 70.3 13.6 151 382-536 42-222 (567)
206 1klx_A Cysteine rich protein B 97.7 0.00058 2E-08 54.3 12.1 112 383-503 9-128 (138)
207 1zu2_A Mitochondrial import re 97.6 3.7E-05 1.3E-09 61.7 4.2 104 379-506 12-125 (158)
208 3qww_A SET and MYND domain-con 97.6 8.3E-05 2.9E-09 71.7 7.3 105 452-574 310-432 (433)
209 2kat_A Uncharacterized protein 97.6 8.7E-05 3E-09 57.0 6.0 80 423-504 4-85 (115)
210 1na3_A Designed protein CTPR2; 97.6 0.00016 5.6E-09 52.5 7.0 65 471-535 8-72 (91)
211 3lvg_A Clathrin heavy chain 1; 97.6 3.3E-05 1.1E-09 72.6 3.4 238 134-390 53-325 (624)
212 3qwp_A SET and MYND domain-con 97.6 0.00024 8.3E-09 68.7 9.6 112 447-576 294-423 (429)
213 1wy6_A Hypothetical protein ST 97.4 0.018 6.2E-07 43.7 15.4 146 374-538 10-157 (172)
214 2kc7_A BFR218_protein; tetratr 97.4 0.00016 5.3E-09 53.7 4.6 79 446-532 6-87 (99)
215 2kc7_A BFR218_protein; tetratr 97.3 0.00042 1.4E-08 51.3 6.3 60 478-537 6-66 (99)
216 3ly7_A Transcriptional activat 97.2 0.0063 2.1E-07 56.3 14.2 69 437-505 274-343 (372)
217 3ma5_A Tetratricopeptide repea 97.2 0.0017 5.6E-08 48.2 8.0 63 369-432 7-69 (100)
218 3qww_A SET and MYND domain-con 97.1 0.0017 5.7E-08 62.7 9.2 93 416-508 310-423 (433)
219 3qwp_A SET and MYND domain-con 96.9 0.0066 2.3E-07 58.6 11.8 100 411-510 294-414 (429)
220 3ly7_A Transcriptional activat 96.9 0.01 3.6E-07 54.8 12.0 68 469-537 274-341 (372)
221 3u64_A Protein TP_0956; tetrat 96.8 0.0036 1.2E-07 55.4 8.0 85 458-542 181-276 (301)
222 1pc2_A Mitochondria fission pr 96.7 0.005 1.7E-07 48.8 7.7 87 420-508 14-107 (152)
223 3bee_A Putative YFRE protein; 96.7 0.015 5E-07 42.1 9.7 77 437-514 3-84 (93)
224 2v5f_A Prolyl 4-hydroxylase su 96.6 0.01 3.5E-07 44.2 8.6 73 440-512 5-86 (104)
225 3mkq_A Coatomer beta'-subunit; 96.6 0.053 1.8E-06 57.6 17.2 156 275-467 607-763 (814)
226 3mkq_A Coatomer beta'-subunit; 96.6 0.12 4E-06 55.0 19.8 102 244-363 660-761 (814)
227 1pc2_A Mitochondria fission pr 96.5 0.0046 1.6E-07 48.9 5.9 68 469-536 29-101 (152)
228 1wy6_A Hypothetical protein ST 96.0 0.35 1.2E-05 36.9 14.2 140 277-437 17-157 (172)
229 3mkq_B Coatomer subunit alpha; 96.0 0.51 1.8E-05 38.3 15.4 101 348-466 15-115 (177)
230 2v5f_A Prolyl 4-hydroxylase su 96.0 0.019 6.5E-07 42.7 6.7 64 472-535 5-75 (104)
231 1nzn_A CGI-135 protein, fissio 95.9 0.098 3.3E-06 39.7 10.1 91 418-510 15-112 (126)
232 3u64_A Protein TP_0956; tetrat 95.7 0.031 1.1E-06 49.5 7.6 105 420-533 179-296 (301)
233 3mkq_B Coatomer subunit alpha; 95.3 0.94 3.2E-05 36.8 15.0 130 376-532 12-141 (177)
234 4ady_A RPN2, 26S proteasome re 95.3 3.5 0.00012 43.3 28.4 25 103-127 233-257 (963)
235 4h7y_A Dual specificity protei 95.0 0.077 2.6E-06 41.3 7.0 103 403-507 12-129 (161)
236 4gns_B Protein CSD3, chitin bi 94.4 0.18 6.3E-06 51.7 10.3 56 478-533 343-398 (754)
237 4h7y_A Dual specificity protei 94.1 0.57 2E-05 36.6 10.0 97 367-466 11-120 (161)
238 1qsa_A Protein (soluble lytic 94.0 5.7 0.00019 40.0 28.0 115 383-500 228-347 (618)
239 2wpv_A GET4, UPF0363 protein Y 94.0 2.6 9E-05 38.0 15.7 128 137-275 35-173 (312)
240 1nzn_A CGI-135 protein, fissio 93.6 0.1 3.4E-06 39.7 4.9 67 469-535 32-103 (126)
241 3lpz_A GET4 (YOR164C homolog); 93.2 4.9 0.00017 36.5 17.2 113 137-260 37-160 (336)
242 1y8m_A FIS1; mitochondria, unk 92.8 0.96 3.3E-05 35.0 9.3 71 437-507 36-112 (144)
243 4ady_A RPN2, 26S proteasome re 92.8 11 0.00039 39.7 29.0 249 246-500 384-657 (963)
244 3ffl_A Anaphase-promoting comp 91.9 0.27 9.1E-06 39.2 5.4 113 407-533 23-149 (167)
245 3o48_A Mitochondria fission 1 91.8 0.25 8.6E-06 37.7 5.0 70 438-507 38-113 (134)
246 4b4t_P 26S proteasome regulato 91.7 2.5 8.6E-05 40.8 13.2 94 342-435 141-249 (445)
247 1y8m_A FIS1; mitochondria, unk 91.5 2 6.8E-05 33.3 9.6 67 469-535 36-106 (144)
248 3o48_A Mitochondria fission 1 91.4 0.71 2.4E-05 35.2 7.1 71 401-472 37-111 (134)
249 3ffl_A Anaphase-promoting comp 91.4 1.4 4.8E-05 35.2 9.0 31 439-469 121-151 (167)
250 4fhn_B Nucleoporin NUP120; pro 91.0 8.1 0.00028 42.5 17.9 164 240-422 816-989 (1139)
251 2ff4_A Probable regulatory pro 90.8 0.56 1.9E-05 44.5 7.6 67 476-542 175-246 (388)
252 1v54_E Cytochrome C oxidase po 89.7 1.8 6.3E-05 30.9 7.4 59 456-514 26-87 (109)
253 2uwj_G Type III export protein 88.5 3.4 0.00012 29.3 7.9 88 112-204 18-105 (115)
254 1v54_E Cytochrome C oxidase po 88.4 2.4 8.3E-05 30.3 7.2 63 384-448 25-87 (109)
255 3lpz_A GET4 (YOR164C homolog); 87.1 17 0.00059 33.0 21.0 168 340-534 37-215 (336)
256 2p58_C Putative type III secre 86.9 3.7 0.00013 29.2 7.3 88 112-204 19-106 (116)
257 4gns_B Protein CSD3, chitin bi 86.2 4.4 0.00015 41.7 10.8 51 378-430 346-397 (754)
258 3ltm_A Alpha-REP4; protein eng 86.1 14 0.00048 30.9 18.3 91 337-432 94-184 (211)
259 2ff4_A Probable regulatory pro 84.9 7.4 0.00025 36.7 11.2 70 373-443 175-248 (388)
260 1zbp_A Hypothetical protein VP 84.5 1.6 5.3E-05 38.1 5.7 58 448-505 5-64 (273)
261 2p58_C Putative type III secre 84.5 9 0.00031 27.3 8.5 79 15-97 20-98 (116)
262 2uwj_G Type III export protein 84.4 8.5 0.00029 27.4 8.1 79 15-97 19-97 (115)
263 2y69_E Cytochrome C oxidase su 84.3 8.5 0.00029 29.3 8.6 50 465-514 81-130 (152)
264 1zbp_A Hypothetical protein VP 83.3 22 0.00076 31.0 12.3 122 378-510 6-138 (273)
265 2y69_E Cytochrome C oxidase su 83.2 5.2 0.00018 30.4 7.2 62 385-448 69-130 (152)
266 3txn_A 26S proteasome regulato 81.7 35 0.0012 32.0 23.3 33 503-537 313-345 (394)
267 2wpv_A GET4, UPF0363 protein Y 81.5 30 0.001 31.2 22.4 169 340-534 35-216 (312)
268 4b4t_R RPN7, 26S proteasome re 81.4 21 0.00073 34.1 13.0 94 340-433 133-237 (429)
269 4fhn_B Nucleoporin NUP120; pro 79.7 8.2 0.00028 42.5 10.6 61 475-535 902-967 (1139)
270 3esl_A Checkpoint serine/threo 76.2 21 0.00072 29.6 9.4 29 473-501 116-144 (202)
271 4b4t_P 26S proteasome regulato 74.8 61 0.0021 31.0 21.0 95 372-466 140-244 (445)
272 4b4t_R RPN7, 26S proteasome re 73.8 16 0.00053 35.0 9.6 96 371-466 133-234 (429)
273 1qsa_A Protein (soluble lytic 73.4 80 0.0027 31.8 35.6 229 281-526 228-470 (618)
274 1wdy_A 2-5A-dependent ribonucl 72.0 50 0.0017 28.8 14.2 81 7-92 7-93 (285)
275 1k1a_A B-cell lymphoma 3-encod 69.5 51 0.0017 27.9 11.7 87 8-95 12-103 (241)
276 3bqo_A Telomeric repeat-bindin 68.5 27 0.00092 28.6 8.0 71 456-526 94-171 (211)
277 3ltj_A Alpharep-4; protein eng 68.4 48 0.0016 27.2 17.5 154 34-193 25-178 (201)
278 3ltm_A Alpha-REP4; protein eng 68.1 51 0.0017 27.3 19.2 153 235-397 32-184 (211)
279 4a1g_A Mitotic checkpoint seri 64.4 40 0.0014 26.5 8.2 49 491-539 84-134 (152)
280 3mv2_A Coatomer subunit alpha; 63.9 63 0.0022 29.0 10.4 61 462-536 195-257 (325)
281 3b7b_A Euchromatic histone-lys 61.1 73 0.0025 26.8 10.8 146 8-163 14-169 (237)
282 3ltj_A Alpharep-4; protein eng 60.9 68 0.0023 26.2 19.9 79 366-453 118-196 (201)
283 2wvi_A Mitotic checkpoint seri 58.7 57 0.002 26.0 8.3 45 492-536 80-126 (164)
284 3kea_A K1L; tropism, ANK repea 56.0 1.1E+02 0.0036 27.0 12.3 50 43-92 34-83 (285)
285 4a1g_A Mitotic checkpoint seri 54.9 75 0.0026 24.9 8.4 25 378-402 110-134 (152)
286 4b4t_S RPN3, 26S proteasome re 53.8 51 0.0017 32.1 8.7 59 404-466 231-296 (523)
287 1ya0_A SMG-7 transcript varian 53.1 38 0.0013 33.0 7.9 56 478-533 158-213 (497)
288 3esl_A Checkpoint serine/threo 50.9 1.1E+02 0.0036 25.4 9.5 55 383-438 93-148 (202)
289 3eu9_A Huntingtin-interacting 50.1 99 0.0034 25.8 9.7 12 148-159 119-130 (240)
290 4gq2_M Nucleoporin NUP120; bet 46.5 1E+02 0.0035 33.0 10.7 51 410-466 816-866 (950)
291 2nsz_A Programmed cell death p 45.2 93 0.0032 23.5 7.4 62 342-403 11-77 (129)
292 2d2s_A Exocyst complex compone 44.9 70 0.0024 27.3 7.4 22 75-96 25-46 (235)
293 3ljn_A Hypothetical protein; a 43.3 1.5E+02 0.005 27.1 10.3 18 244-261 249-266 (364)
294 2d2s_A Exocyst complex compone 43.1 78 0.0027 27.1 7.4 86 376-465 25-116 (235)
295 1n11_A Ankyrin; clathrin, BAND 42.1 2.2E+02 0.0076 26.7 13.5 56 344-404 314-372 (437)
296 3eiq_C Programmed cell death p 41.5 2.1E+02 0.0073 26.2 13.7 65 240-305 221-290 (358)
297 3txn_A 26S proteasome regulato 41.1 2.3E+02 0.0078 26.5 30.4 24 240-263 23-46 (394)
298 3e3v_A Regulatory protein RECX 40.4 1.4E+02 0.0049 24.0 8.5 80 389-470 87-167 (177)
299 1oyz_A Hypothetical protein YI 40.4 1.8E+02 0.0062 25.2 22.6 126 366-503 139-265 (280)
300 1oyz_A Hypothetical protein YI 39.9 1.9E+02 0.0063 25.1 22.1 30 235-264 205-234 (280)
301 1k1a_A B-cell lymphoma 3-encod 39.8 1.6E+02 0.0056 24.5 10.2 15 146-160 54-68 (241)
302 3eu9_A Huntingtin-interacting 39.5 1.6E+02 0.0056 24.4 9.8 13 248-260 118-130 (240)
303 3jxi_A Vanilloid receptor-rela 39.4 1.3E+02 0.0045 25.6 8.8 54 174-227 10-72 (260)
304 4b4t_S RPN3, 26S proteasome re 39.3 52 0.0018 32.0 6.3 68 440-507 231-305 (523)
305 1wdy_A 2-5A-dependent ribonucl 39.2 1.8E+02 0.0063 24.9 16.9 116 42-163 7-130 (285)
306 4aez_C MAD3, mitotic spindle c 38.9 1.8E+02 0.006 24.6 8.8 53 386-439 131-184 (223)
307 2nsz_A Programmed cell death p 38.8 1E+02 0.0035 23.3 6.8 22 73-94 12-33 (129)
308 2wvi_A Mitotic checkpoint seri 38.6 1.5E+02 0.005 23.6 8.3 54 386-440 77-131 (164)
309 3ygs_P Procaspase 9; apoptosis 38.5 47 0.0016 23.6 4.6 64 22-89 24-89 (97)
310 2f6m_A Suppressor protein STP2 38.4 80 0.0027 20.4 5.1 49 1-50 1-49 (65)
311 1n11_A Ankyrin; clathrin, BAND 36.7 2.7E+02 0.0092 26.1 16.4 83 347-440 284-372 (437)
312 2ion_A PDCD4, programmed cell 36.6 83 0.0028 24.7 6.1 62 342-403 13-79 (152)
313 3bu8_A Telomeric repeat-bindin 36.0 1.4E+02 0.005 24.8 7.4 16 450-465 124-139 (235)
314 3jxi_A Vanilloid receptor-rela 34.5 1.6E+02 0.0054 25.1 8.6 56 7-62 7-71 (260)
315 2ion_A PDCD4, programmed cell 33.6 79 0.0027 24.8 5.5 22 73-94 14-35 (152)
316 2r9g_A AAA ATPase, central reg 32.8 2.1E+02 0.0071 23.6 8.9 44 272-317 16-62 (204)
317 3bge_A Predicted ATPase; struc 32.1 1.7E+02 0.0059 24.0 7.2 39 278-317 18-56 (201)
318 3hra_A Ankyrin repeat family p 31.6 2E+02 0.0068 23.0 8.6 20 45-64 10-29 (201)
319 2p1h_A APAF-1, apoptotic prote 31.3 95 0.0032 21.7 5.2 63 21-87 24-86 (94)
320 2fe3_A Peroxide operon regulat 31.1 1.1E+02 0.0039 23.5 6.1 61 394-456 12-72 (145)
321 4gq2_M Nucleoporin NUP120; bet 30.8 4.4E+02 0.015 28.2 12.5 128 241-383 815-950 (950)
322 3b7b_A Euchromatic histone-lys 30.8 1.8E+02 0.0063 24.1 8.2 18 313-330 217-234 (237)
323 3aji_A 26S proteasome non-ATPa 30.7 1.4E+02 0.0049 24.7 7.5 182 72-261 7-194 (231)
324 3mwm_A ZUR, putative metal upt 30.6 61 0.0021 24.9 4.4 48 7-54 18-65 (139)
325 2o03_A Probable zinc uptake re 30.4 65 0.0022 24.4 4.5 48 7-54 15-62 (131)
326 4aez_C MAD3, mitotic spindle c 30.1 1.2E+02 0.0042 25.5 6.3 31 472-502 150-180 (223)
327 2rfa_A Transient receptor pote 30.0 2E+02 0.0067 23.9 8.2 49 44-93 7-59 (232)
328 1bd8_A P19INK4D CDK4/6 inhibit 30.0 1.3E+02 0.0046 22.9 6.7 149 104-262 3-156 (156)
329 3kea_A K1L; tropism, ANK repea 29.1 2.9E+02 0.0098 24.0 12.0 15 348-362 69-83 (285)
330 3ygs_P Procaspase 9; apoptosis 28.1 96 0.0033 22.0 4.7 37 251-287 52-88 (97)
331 2qx5_A Nucleoporin NIC96; mRNA 26.9 5.1E+02 0.017 26.2 19.4 39 73-111 157-197 (661)
332 2xig_A Ferric uptake regulatio 26.3 1.9E+02 0.0064 22.4 6.6 61 394-456 17-77 (150)
333 2xig_A Ferric uptake regulatio 25.9 85 0.0029 24.5 4.6 57 27-84 17-77 (150)
334 1ug3_A EIF4GI, eukaryotic prot 25.6 79 0.0027 28.9 4.9 23 6-28 15-37 (339)
335 3bu8_A Telomeric repeat-bindin 25.2 54 0.0019 27.3 3.2 45 477-521 119-163 (235)
336 4ets_A Ferric uptake regulatio 24.6 1.5E+02 0.0052 23.4 5.9 61 395-456 24-85 (162)
337 3ctd_A Putative ATPase, AAA fa 24.4 3.1E+02 0.01 22.8 8.2 47 270-317 35-84 (213)
338 3t8k_A Uncharacterized protein 24.3 2.3E+02 0.008 22.7 7.2 56 79-134 14-69 (186)
339 2b7e_A PRE-mRNA processing pro 24.3 78 0.0027 20.0 3.1 35 182-216 2-37 (59)
340 3mkr_B Coatomer subunit alpha; 23.9 3E+02 0.01 24.7 8.0 106 379-504 112-230 (320)
341 1mzb_A Ferric uptake regulatio 23.9 87 0.003 23.9 4.2 35 17-51 33-67 (136)
342 2w57_A Ferric uptake regulatio 23.8 98 0.0034 24.1 4.5 45 8-52 22-67 (150)
343 2qx5_A Nucleoporin NIC96; mRNA 23.6 5.9E+02 0.02 25.8 18.7 21 8-28 158-178 (661)
344 1ug3_A EIF4GI, eukaryotic prot 23.1 3.5E+02 0.012 24.5 8.8 27 342-368 15-41 (339)
345 2fe3_A Peroxide operon regulat 22.1 91 0.0031 24.1 4.0 58 26-84 11-72 (145)
346 4ets_A Ferric uptake regulatio 22.0 1E+02 0.0035 24.4 4.4 67 18-85 13-86 (162)
347 3twe_A Alpha4H; unknown functi 21.6 48 0.0017 16.0 1.3 13 565-577 3-15 (27)
348 3hra_A Ankyrin repeat family p 21.4 3.1E+02 0.011 21.8 10.0 53 144-201 11-67 (201)
349 3eyy_A Putative iron uptake re 21.0 97 0.0033 24.0 3.9 34 18-51 33-66 (145)
350 2pnn_A Transient receptor pote 20.9 3.9E+02 0.013 22.7 9.3 51 176-226 20-79 (273)
351 2rfa_A Transient receptor pote 20.7 3.5E+02 0.012 22.2 11.0 51 9-63 7-60 (232)
352 3t8k_A Uncharacterized protein 20.6 3.3E+02 0.011 21.8 7.7 56 146-202 14-71 (186)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-41 Score=350.62 Aligned_cols=480 Identities=11% Similarity=-0.065 Sum_probs=398.4
Q ss_pred HHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHHHHHHhccCChHHHHHHHH
Q 047471 46 LYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASAISACAGIQSLVKGQQIHA 124 (579)
Q Consensus 46 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~ 124 (579)
.+...|....+...+..++.++...|+.++..+.+.|++++|+.+|+++... |+..++..+..+|.+.|++++|..+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3456677788888888888888999999999999999999999999999866 999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------------------CcchHHHHHHHHHhCCCcchH
Q 047471 125 YSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEP-------------------NLVSFNALIAGFVENQQPEKG 185 (579)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a 185 (579)
.+.. .+++..+++.++.+|.+.|++++|.++|++..+. +..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 8864 3678899999999999999999999999965443 377899999999999999999
Q ss_pred HHHHHHHHHCCCCCCcc-cHHHHHHHhcccCcccc--hhHH-HHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHh
Q 047471 186 FEVFKLMLRQGLLPDRF-SFAGGLEICSVSNDLRK--GMIL-HCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRL 261 (579)
Q Consensus 186 ~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 261 (579)
+++|++|.+.+ |+.. .+..+...+...+..+. +..+ +..+...+..+...+++.++..|.+.|++++|.++|+.
T Consensus 220 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 220 KECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999999853 5543 33334333333222221 1111 34444444444555667778889999999999999999
Q ss_pred cCC--CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcc
Q 047471 262 IEE--KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVG 339 (579)
Q Consensus 262 ~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 339 (579)
+.+ ++..+|+.++..|.+.|++++|+.+|+++.+. + +.+..++..++.++.+.|++++|..+++.+.+.. +.+..
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 987 78899999999999999999999999999876 3 3467789999999999999999999999998654 66788
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH 416 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 416 (579)
++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999984 3467799999999999999999999999999863 4478899999999999
Q ss_pred cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--hhhHHHHHHHHHhcCC
Q 047471 417 AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-------PLGQD--PIVLGTLLSACRLRRD 487 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~ 487 (579)
.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..++..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999984 4557889999999999999999999999987 33676 6789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 488 VVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 488 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+++|.+.++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-40 Score=343.63 Aligned_cols=478 Identities=10% Similarity=-0.040 Sum_probs=399.1
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHhcccCC--CCcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHHHHHHh
Q 047471 35 PDVIVSNHVLNLYAKCGKMILARKVFDEMSE--RNLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASAISACA 111 (579)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~~~ 111 (579)
+++..|+.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|+.+|+++... ++..+++.++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 5677788888888888888888888888764 77778888888888888888888888888655 77778888888888
Q ss_pred ccCChHHHHHHHHHHHHh---------------cCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--C-CcchHHHHH
Q 047471 112 GIQSLVKGQQIHAYSLKF---------------GYASISFVGNSLISMYMKVGYSSDALLVYGEAFE--P-NLVSFNALI 173 (579)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 173 (579)
+.|++++|.++|+.+... +.+++..+++.++.+|.+.|++++|.+.|+++.+ | +...+..+.
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 888888888888743211 2344578999999999999999999999998764 2 333455455
Q ss_pred HHHHhCCCcchHHH--H-HHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcC
Q 047471 174 AGFVENQQPEKGFE--V-FKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFN 250 (579)
Q Consensus 174 ~~~~~~~~~~~a~~--~-~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 250 (579)
..+...+..+.+.. + +..+...+..+...+|..++..|.+.|+++.|..+++.+.+. +++..+++.++..|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc
Confidence 44443333222211 1 455555555556667777888899999999999999988776 578999999999999999
Q ss_pred ChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHH
Q 047471 251 LIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHA 327 (579)
Q Consensus 251 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (579)
++++|.++|+.+.+ .+..+|+.++.++.+.|++++|..+++++.+. .+.+..++..++..+.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999864 36788999999999999999999999999854 35578899999999999999999999999
Q ss_pred HHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047471 328 HLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDS 404 (579)
Q Consensus 328 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 404 (579)
++.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.+.
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 998865 5567899999999999999999999999983 3477899999999999999999999999999863 4478
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTY---GISPD--IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGT 477 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 477 (579)
.+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| ++.++..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 999999999999999999999999998753 55677 789999999999999999999999997 3334 7899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
+..+|...|++++|.+.++++++++|+++..+..++.+|..
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.9e-26 Score=225.23 Aligned_cols=370 Identities=11% Similarity=0.040 Sum_probs=279.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCCcch
Q 047471 108 SACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF---EPNLVSFNALIAGFVENQQPEK 184 (579)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 184 (579)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... +.+..+|..+...+.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 44566777777777777776643 2234455566666777777777777766532 3445567777777777777777
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC
Q 047471 185 GFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE 264 (579)
Q Consensus 185 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 264 (579)
|...|+++.+. .|+. ...+..+..++.+.|++++|.+.|+.+.+
T Consensus 86 A~~~~~~al~~--~p~~----------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDF----------------------------------IDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--Ccch----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777653 2432 23344555556666666666666655543
Q ss_pred --C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchH
Q 047471 265 --K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVG 341 (579)
Q Consensus 265 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 341 (579)
| +...+..+...+...|++++|...|+++.+. .+.+..++..+...+...|++++|...++++.+.+ +.+...+
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 2 3345666677777778888888888887754 22346677778888888888888888888887765 4556777
Q ss_pred hHHHHHHHhcCChHHHHHHHHccC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 047471 342 NALVNMYAKCGLISCSYKLFNEML--H-RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHA 417 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 417 (579)
..+...+...|++++|...|++.. . .+..++..+..++...|++++|...|+++.+. .| +..++..+...+.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence 888888888899999998888773 2 35678888999999999999999999999985 44 477888999999999
Q ss_pred CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 047471 418 GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLA 495 (579)
Q Consensus 418 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~ 495 (579)
|++++|...++++.+. .+.+..++..++..+.+.|++++|.+.++++ ...| +..++..+...+...|++++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999884 4667888999999999999999999999986 4445 5678889999999999999999999
Q ss_pred HHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 496 KQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 496 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
+++++.+|+++..|..++.++...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.9e-28 Score=238.52 Aligned_cols=183 Identities=11% Similarity=0.181 Sum_probs=168.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCC---------hHHHHHHHHHHHHccCCCCc
Q 047471 268 ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLAS---------VQHGKQIHAHLIRMRLNQDV 338 (579)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 338 (579)
..++.+|.+|++.|++++|+++|++|.+. |+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 35778899999999999999999999988 999999999999999986553 68899999999999999999
Q ss_pred chHhHHHHHHHhcCChHHHHHHHHcc----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047471 339 GVGNALVNMYAKCGLISCSYKLFNEM----LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC 414 (579)
Q Consensus 339 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 414 (579)
.+|+++|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998 46899999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 047471 415 NHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR 452 (579)
Q Consensus 415 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (579)
++.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 9999999999999999987 999999999999988875
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=9.8e-26 Score=220.23 Aligned_cols=351 Identities=14% Similarity=0.083 Sum_probs=288.5
Q ss_pred HHHHhCCCcchHHHHHHHHHHCCCCCCcc-cHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCCh
Q 047471 174 AGFVENQQPEKGFEVFKLMLRQGLLPDRF-SFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLI 252 (579)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 252 (579)
..+.+.|++++|.+.+..+.+. .|+.. .+..+...+...|+++.|...++...+.. +.+..++..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445556666666666655543 23332 33333444455566666666665555443 34667788899999999999
Q ss_pred hHHHHHHHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHHHHHH
Q 047471 253 GEAEKAFRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQIHAH 328 (579)
Q Consensus 253 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 328 (579)
++|.+.|+.+.+ | +..+|..+..++...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+++
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999998764 4 4557999999999999999999999999865 454 45667778888999999999999999
Q ss_pred HHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 047471 329 LIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DS 404 (579)
Q Consensus 329 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~ 404 (579)
+.+.. |.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..+. .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 99875 55678899999999999999999999999843 34567888999999999999999999999885 45 57
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCChhhHHHHHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-P-LGQDPIVLGTLLSAC 482 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~ 482 (579)
.++..+...+...|++++|...++++.+. .+.+..++..++.++.+.|++++|.+.++++ . .+++..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 88999999999999999999999999873 3456788999999999999999999999987 2 345778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
...|++++|...++++++..|+++..+..++.+|.+.|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-27 Score=236.97 Aligned_cols=191 Identities=13% Similarity=0.161 Sum_probs=154.1
Q ss_pred HHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCCh
Q 047471 204 FAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADY 283 (579)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 283 (579)
++.+|.+|++.|++++|..+|++|.+.|+.||..+|+.|+.+|++.+...++ .+.++.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------------------~~~~~l 86 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------------------SPNPGL 86 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------------------SCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------------------hhcchH
Confidence 4444555555555555555555555555555555555555555444332211 123456
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHc
Q 047471 284 EKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNE 363 (579)
Q Consensus 284 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 363 (579)
++|.++|++|... |+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8899999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047471 364 M----LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHA 417 (579)
Q Consensus 364 ~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 417 (579)
| ..||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9 57999999999999999999999999999999999999999999999998764
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.8e-24 Score=217.37 Aligned_cols=226 Identities=11% Similarity=-0.003 Sum_probs=116.0
Q ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHh
Q 047471 305 TFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHAN 381 (579)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 381 (579)
.+..+...+...|+++.|...++.+.+.... ..++..+..+|...|++++|...++++.+ .+...+..+...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555544322 44444555555555555555555555422 233445555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 382 HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 382 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555555555532 113444555555555555555555555555542 22334455555555555555555555
Q ss_pred HHHhC-C---CCCC----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHH
Q 047471 462 YTKKF-P---LGQD----PIVLGTLLSACRL---RRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARK 530 (579)
Q Consensus 462 ~~~~~-~---~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (579)
.++++ . ..++ ...+..+...+.. .|++++|...++++++..|+++..+..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55554 1 1111 1245555555555 5555555555555555555555555555555555555555555555
Q ss_pred HHHhC
Q 047471 531 MLKDS 535 (579)
Q Consensus 531 ~~~~~ 535 (579)
+..+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.4e-24 Score=214.84 Aligned_cols=438 Identities=12% Similarity=-0.019 Sum_probs=307.0
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 047471 69 VSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMK 147 (579)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (579)
..|......+.+.|++++|+..|+++... |+..++..+..++...|++++|.+.++.+++.+ +.+..++..+..+|.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 34556667777778888888888777665 777777777777777777777777777776654 2344566666677777
Q ss_pred cCChhHHHHHhccCC---CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHH
Q 047471 148 VGYSSDALLVYGEAF---EPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILH 224 (579)
Q Consensus 148 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 224 (579)
.|++++|...|+++. +++......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 777777776666532 22333334444444333333333333333333333344333332222222223333333333
Q ss_pred HHHHHhCCCC---------ChhHHhHHHHHHHh---cCChhHHHHHHHhcCC----------------C-CcchHHHHHH
Q 047471 225 CLTVKCKLES---------NPFVGNTIMALYSK---FNLIGEAEKAFRLIEE----------------K-DLISWNTFIA 275 (579)
Q Consensus 225 ~~~~~~~~~~---------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~ 275 (579)
..+......+ +...+......+.. .|++++|...|+.+.+ + +...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 3332222221 13344444444554 8999999999988755 1 2456788889
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChH
Q 047471 276 ACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLIS 355 (579)
Q Consensus 276 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 355 (579)
.+...|++++|...|+++.+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|+++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999876 3447888889999999999999999999998875 557788899999999999999
Q ss_pred HHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047471 356 CSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 356 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 432 (579)
+|...|+++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999983 3456788889999999999999999999999852 33567888889999999999999999999987
Q ss_pred HhCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 433 TYGISPD----IEHFTCLIDLLGR---AGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 433 ~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
...-.++ ...+..+..++.. .|++++|.+.++++ ...| +...+..+...+...|++++|...++++++++|
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 5333333 3488899999999 99999999999986 3334 667888999999999999999999999999999
Q ss_pred CCCccHHHH
Q 047471 504 TTTSPYVLL 512 (579)
Q Consensus 504 ~~~~~~~~l 512 (579)
+++..+..+
T Consensus 481 ~~~~~~~~~ 489 (514)
T 2gw1_A 481 TMEEKLQAI 489 (514)
T ss_dssp SHHHHHHHH
T ss_pred ccHHHHHHH
Confidence 988777666
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=5.3e-23 Score=210.16 Aligned_cols=417 Identities=13% Similarity=0.029 Sum_probs=193.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHcccC-C-CHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 047471 69 VSWSAMISGHHQAGEHLLALEFFSQMHLL-P-NEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYM 146 (579)
Q Consensus 69 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (579)
..|..+...+.+.|++++|+..|+++... | +..++..+..++...|++++|.+.++.+++.+ +.+..++..+..++.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 44566666677777777777777766554 3 44566666666667777777777777766654 234566777777788
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC------CCCCcccHHHHHHHhcccCcccch
Q 047471 147 KVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQG------LLPDRFSFAGGLEICSVSNDLRKG 220 (579)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a 220 (579)
..|++++|...|+.+ ..+....+..+..+...+....|...++.+.... ..|+....
T Consensus 105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~---------------- 167 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL---------------- 167 (537)
T ss_dssp HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH----------------
T ss_pred HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH----------------
Confidence 888888888777533 2222222223444444555567777777775431 11222111
Q ss_pred hHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcc---hHHHHHHHHHh--------CCChHHHHHH
Q 047471 221 MILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLI---SWNTFIAACSH--------CADYEKGLSV 289 (579)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~ 289 (579)
..+....+.+.+...+......+.. ....+...+.. .|++++|..+
T Consensus 168 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 168 -----------------------ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDM 224 (537)
T ss_dssp -----------------------HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 1122222222222222222221111 11111111111 1234444444
Q ss_pred HHHhhhCCCCCCC--------HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHH
Q 047471 290 FKEMSNDHGVRPD--------DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLF 361 (579)
Q Consensus 290 ~~~m~~~~~~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 361 (579)
|+++.+. .|+ ..++..+...+...|+++.|...++.+.+.. |+...+..+...|...|++++|...|
T Consensus 225 ~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 225 YHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 4444422 222 1123333333444444444444444444432 22334444444444444444444444
Q ss_pred HccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC
Q 047471 362 NEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP 438 (579)
Q Consensus 362 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 438 (579)
+++. ..+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~ 376 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT 376 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 4442 1233344445555555555555555555554431 112344444445555555555555555555442 223
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-------DPIVLGTLLSACRLR----------RDVVIGERLAKQLFH 500 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~ 500 (579)
+...+..+...+...|++++|.+.++++ ...| ....+......+... |++++|...++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 3444445555555555555555555443 1000 011122223334444 555555555555555
Q ss_pred cCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 501 LQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 501 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.+|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=3.8e-22 Score=203.82 Aligned_cols=441 Identities=10% Similarity=-0.014 Sum_probs=297.1
Q ss_pred cchHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHH
Q 047471 2 AKSISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGH 78 (579)
Q Consensus 2 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 78 (579)
+..|..+...+.+.|++++|...|+.+++..+ .+..++..+..+|.+.|++++|+..|+++.+ .+..+|..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 34567778888888999999999998888763 5677888888888888999999888888754 3556778888888
Q ss_pred HhcCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhcCChhHHHH
Q 047471 79 HQAGEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGY--ASISFVGNSLISMYMKVGYSSDALL 156 (579)
Q Consensus 79 ~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (579)
...|++++|+..|+.+...|+... ..+..+...+....|...++.++.... .+........+..+....+.+.+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 888899888888875543343221 122233344445667777776654311 0011111233444555666666666
Q ss_pred HhccCCCCCcc---hHHHHHHHHHhC--------CCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHH
Q 047471 157 VYGEAFEPNLV---SFNALIAGFVEN--------QQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHC 225 (579)
Q Consensus 157 ~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 225 (579)
.+......+.. ....+...+... |++++|..+|+++.+. .|+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~----------------------- 236 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDD----------------------- 236 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCH-----------------------
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcc-----------------------
Confidence 66665544333 222222222111 2445555555555432 12211
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHH
Q 047471 226 LTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFT 305 (579)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 305 (579)
.++..+ ..++..+...+...|++++|...|++..+. .|+...
T Consensus 237 -----------~~~~~~------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 278 (537)
T 3fp2_A 237 -----------PLRENA------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNS 278 (537)
T ss_dssp -----------HHHHHH------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHH
T ss_pred -----------hhhHHH------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchH
Confidence 000101 113444556677788888888888888754 456777
Q ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhc
Q 047471 306 FASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANH 382 (579)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 382 (579)
+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...+...
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 7788888888888888888888888765 5567778888888999999999999988873 23466788889999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC----ChhHHHHHHHHHHhc-----
Q 047471 383 RLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP----DIEHFTCLIDLLGRA----- 453 (579)
Q Consensus 383 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----- 453 (579)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.....+ ....+..+..++...
T Consensus 358 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999998853 33567788888889999999999999999876521111 122344556777777
Q ss_pred -----CChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 454 -----GKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 454 -----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
|++++|...++++ ...| +...+..+...+...|++++|.+.+++++++.|.++....
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999987 3334 6678889999999999999999999999999998766544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.2e-21 Score=193.46 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=46.7
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPD-----IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACR 483 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 483 (579)
...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++|.+.++++ ...| +...+..+..+|.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34444455555555555554442 122 223444444555555555555554443 1122 3444444555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
..|++++|...++++++++|+++..+..++
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 555555555555555555555544444444
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.1e-21 Score=193.59 Aligned_cols=307 Identities=9% Similarity=0.013 Sum_probs=243.0
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHH
Q 047471 164 PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIM 243 (579)
Q Consensus 164 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 243 (579)
.+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.+. .+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 345678888999999999999999999998752 34566788888889999999999999999888753 3567788888
Q ss_pred HHHHhcCChhHHHHHHHhcCCCC---c---chHHHHHHH------------HHhCCChHHHHHHHHHhhhCCCCCCCHHH
Q 047471 244 ALYSKFNLIGEAEKAFRLIEEKD---L---ISWNTFIAA------------CSHCADYEKGLSVFKEMSNDHGVRPDDFT 305 (579)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~l~~~------------~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 305 (579)
.+|.+.|++++|.+.|+.+.+.+ . ..+..++.. +...|++++|+..|+++... .+.+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 99999999999999998887633 2 566666443 78889999999999998765 2446777
Q ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--C-ChhhHHHH-------
Q 047471 306 FASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--R-NVVSWNTI------- 375 (579)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l------- 375 (579)
+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.. | +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 8888888899999999999999888765 56678888889999999999999999988842 3 33444444
Q ss_pred -----HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHH
Q 047471 376 -----IAAHANHRLGGSALKLFEQMKATGIKPD-----SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTC 445 (579)
Q Consensus 376 -----~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+. .+.+...+..
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~ 334 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 77888889999999999998884 454 346777888888999999999999988874 3456788888
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHH
Q 047471 446 LIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLL 479 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 479 (579)
++.+|...|++++|.+.++++ ...|+ +..+..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 999999999999999988886 55564 44444444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4.6e-19 Score=170.72 Aligned_cols=289 Identities=7% Similarity=0.010 Sum_probs=171.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcC
Q 047471 241 TIMALYSKFNLIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLA 317 (579)
Q Consensus 241 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 317 (579)
.+...+...|++++|...|+.+.+ .+...+..+...+...|++++|+..|+++.+. .+.+...+..+...+...|
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcC
Confidence 333444444444444444444322 12333444444444444444444444444432 1112333444444444444
Q ss_pred ChHHHHHHHHHHHHccCC---CCcchHhH------------HHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHH
Q 047471 318 SVQHGKQIHAHLIRMRLN---QDVGVGNA------------LVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAH 379 (579)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~---~~~~~~~~------------li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 379 (579)
++++|...++.+.+.. + .+...+.. +...+...|++++|...++++. ..+...+..+...+
T Consensus 86 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4444444444444332 1 12222222 2466677777777777777763 23455677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHH------------HHH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFT------------CLI 447 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~ 447 (579)
...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+. .++
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHH
Confidence 77788888888887777642 335667777777777778888888888777764 222333222 225
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-h----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 448 DLLGRAGKLLEAEEYTKKF-PLGQD-P----IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
..+.+.|++++|.+.++++ ...|+ + ..+..+...+...|++++|...++++++.+|+++..+..++.++...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 5677788888888887775 22333 2 2234456677778888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhC
Q 047471 522 WGDVAGARKMLKDS 535 (579)
Q Consensus 522 ~~~A~~~~~~~~~~ 535 (579)
+++|...++++.+.
T Consensus 322 ~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 322 YDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888887654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=8.5e-19 Score=168.85 Aligned_cols=310 Identities=9% Similarity=-0.022 Sum_probs=230.8
Q ss_pred cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHH
Q 047471 166 LVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMAL 245 (579)
Q Consensus 166 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (579)
+..+..+...+...|++++|+..|+++.+.. |+ +..++..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~~a~~ 46 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--PD----------------------------------NYIAYYRRATV 46 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc----------------------------------cHHHHHHHHHH
Confidence 3456667777888888888888888877642 32 22334455556
Q ss_pred HHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC---C-HHHHHHH---------
Q 047471 246 YSKFNLIGEAEKAFRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRP---D-DFTFASI--------- 309 (579)
Q Consensus 246 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p---~-~~~~~~l--------- 309 (579)
+...|++++|...|+.+.+ | +...|..+...+...|++++|...|++..+. .| + ...+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHH
Confidence 6666666666666665543 2 3456666777777777777777777777643 44 2 2233222
Q ss_pred ---HHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcC
Q 047471 310 ---LAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHR 383 (579)
Q Consensus 310 ---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 383 (579)
...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+ .+...+..+...+...|
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 467778889999999998888765 56677888888999999999999999998743 45677888899999999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHH------------HHHHHHhccCCHHHHHHHHHHhHHHhCCCCCh----hHHHHH
Q 047471 384 LGGSALKLFEQMKATGIKPD-SVTFI------------GLLTACNHAGLVKEGEAYFNSMEKTYGISPDI----EHFTCL 446 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l 446 (579)
++++|...+++..+. .|+ ...+. .+...+...|++++|...++++.+.. +.+. ..+..+
T Consensus 203 ~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 203 DHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERI 278 (359)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 999999999999885 333 33332 22556889999999999999998852 2233 235567
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC
Q 047471 447 IDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD 519 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 519 (579)
..++...|++++|.+.+++. ...| ++..+..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88999999999999999987 3344 7788999999999999999999999999999999998888888776543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-18 Score=165.30 Aligned_cols=286 Identities=10% Similarity=-0.024 Sum_probs=220.0
Q ss_pred CCChhHHhHHHHHHHhcCChhHHHHHHHhcCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 047471 233 ESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE--K-DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASI 309 (579)
Q Consensus 233 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 309 (579)
+.+..++..+...+...|++++|.++|+.+.+ | +...+..++..+...|++++|..+++++.+. .+.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 34455566677777777888888888877654 2 4456666777888888888888888888765 23345667777
Q ss_pred HHHHhCcC-ChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCCh
Q 047471 310 LAACAGLA-SVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLG 385 (579)
Q Consensus 310 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 385 (579)
...+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77788888 8888888888887765 45667788888888888888888888888732 3456677788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhC-------CCCChhHHHHHHHHHHhcCChHH
Q 047471 386 GSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYG-------ISPDIEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~ 458 (579)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999888752 33577888888888899999999999988877421 13445688888889999999999
Q ss_pred HHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH-HcCCCh
Q 047471 459 AEEYTKKF-PLG-QDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY-ASDGMW 522 (579)
Q Consensus 459 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 522 (579)
|.+.+++. ... .+...+..+...+...|++++|...++++++.+|+++..+..++.++ ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99988886 223 35677888888888999999999999999999999988899998888 455554
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=7.2e-16 Score=162.12 Aligned_cols=465 Identities=9% Similarity=0.040 Sum_probs=335.8
Q ss_pred HHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccC------------CCCcc----
Q 047471 6 SSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMS------------ERNLV---- 69 (579)
Q Consensus 6 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------~~~~~---- 69 (579)
..|+..+-+++++.--...++.-...|. .++.++|+|...|...++-.+ +.+.+-. ++|+.
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~i 919 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHH
Confidence 4566667777777777777888888884 788999999999997664333 2222211 01211
Q ss_pred ------cHHHHHHHHHhcCChHH-HHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcC--CCchhHHHH
Q 047471 70 ------SWSAMISGHHQAGEHLL-ALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGY--ASISFVGNS 140 (579)
Q Consensus 70 ------~~~~l~~~~~~~g~~~~-a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 140 (579)
.-..||+..-+++-+.. |.-+.++ .|...|..++.- +-+--+++.++.....+ ..++.-...
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r----~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~ 990 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYLVRR----KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSV 990 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHHHHh----cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHH
Confidence 12233444444444332 2223333 244445544421 11223344555444332 233444467
Q ss_pred HHHHHHhcCChhHHHHHhccCC-CC-----CcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhccc
Q 047471 141 LISMYMKVGYSSDALLVYGEAF-EP-----NLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVS 214 (579)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 214 (579)
.+..|...|.+.+|+++++++. .+ +....+.++.+..+. +..+..+....... .....+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhC
Confidence 7888999999999999999865 22 234566677777777 55666666666542 1234467778889
Q ss_pred CcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhh
Q 047471 215 NDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMS 294 (579)
Q Consensus 215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 294 (579)
|.+++|..+|+.... .. ..+-..+...+++++|.++.+++. ++.+|..+..++...|++++|++.|.+.
T Consensus 1063 glyEEAf~IYkKa~~-----~~---~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NT---SAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HH---HHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 999999999988521 11 112222337889999999999884 4678999999999999999999999664
Q ss_pred hCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHH
Q 047471 295 NDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNT 374 (579)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 374 (579)
-|...|..++.+|.+.|+++++.+++....+.. +++.+.+.++.+|++.+++++...+. ..++...|..
T Consensus 1132 ------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQ 1200 (1630)
T ss_pred ------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHH
Confidence 367788889999999999999999999888765 44444556999999999999655553 3556677888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG 454 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (579)
+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..++...|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhh
Confidence 999999999999999999985 478999999999999999999998773 5688999999999999
Q ss_pred ChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC--CChHHHHHHHH
Q 047471 455 KLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD--GMWGDVAGARK 530 (579)
Q Consensus 455 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 530 (579)
++..|......+ ..++..+..++..|...|.+++|+.+++.++.++|.+...|..|+.+|.+- ++..++.++|.
T Consensus 1265 Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1265 EFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999977654 346667778999999999999999999999999999999998888888775 44555555544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=5.3e-18 Score=161.27 Aligned_cols=265 Identities=11% Similarity=0.014 Sum_probs=228.5
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHH
Q 047471 265 KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNAL 344 (579)
Q Consensus 265 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 344 (579)
.+...+..+...+...|++++|+.+|+++.+. .+.+...+..++..+...|++++|..+++.+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 35667888888999999999999999999876 23344456667788889999999999999999875 5678888999
Q ss_pred HHHHHhcC-ChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047471 345 VNMYAKCG-LISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLV 420 (579)
Q Consensus 345 i~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 420 (579)
...+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999999843 346688999999999999999999999999853 22456677788889999999
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----------CCChhhHHHHHHHHHhcCCHH
Q 047471 421 KEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP-L----------GQDPIVLGTLLSACRLRRDVV 489 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~ 489 (579)
++|...++++.+ ..+.+...+..++..+...|++++|.+.++++. . +.....+..+...+...|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999987 445667889999999999999999999998861 1 234578889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 490 IGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 490 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+|...++++++..|+++..+..++.++...|++++|.+.+++..+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999987654
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=6.8e-19 Score=166.08 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=62.5
Q ss_pred ccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 047471 49 KCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLK 128 (579)
Q Consensus 49 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 128 (579)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 557788888888888554 47888888888888888888888654 6777888888888888888888887776666
Q ss_pred hcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHH
Q 047471 129 FGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGL 208 (579)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 208 (579)
. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..+.
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 3 34467778888888888888888877753 66678888888888888888888888866 2555555
Q ss_pred HHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH
Q 047471 209 EICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLS 288 (579)
Q Consensus 209 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 288 (579)
.++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~ 228 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELIT 228 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHH
Confidence 5555555555555555544 144555555555555555555544444333 222223345555555555555555
Q ss_pred HHHHhh
Q 047471 289 VFKEMS 294 (579)
Q Consensus 289 ~~~~m~ 294 (579)
+++...
T Consensus 229 lLe~aL 234 (449)
T 1b89_A 229 MLEAAL 234 (449)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555554
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=6.1e-15 Score=155.26 Aligned_cols=415 Identities=11% Similarity=0.079 Sum_probs=293.2
Q ss_pred hHHHHHHHhhhhcchhHHHHHHHHHHHhcC--CCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhc
Q 047471 4 SISSLLHHCSKTKALQQGISLHAAVLKMGI--QPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQA 81 (579)
Q Consensus 4 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (579)
.....+++|...|.+.+|.++++...-.+- .-+....+.++.+..+. +........++... .....+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhC
Confidence 345677888899999999999999984321 12345566677666666 33444444444432 2245578889999
Q ss_pred CChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccC
Q 047471 82 GEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEA 161 (579)
Q Consensus 82 g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (579)
|.+++|..+|++... .....+.++. ..+++++|.++.+.. .++.+|..+..++...|++++|...|.+.
T Consensus 1063 glyEEAf~IYkKa~~--~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV--NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC--HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 999999999999852 1112222222 677899998888855 34778899999999999999999999775
Q ss_pred CCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhH
Q 047471 162 FEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNT 241 (579)
Q Consensus 162 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 241 (579)
.|...|..++.++.+.|++++|++.|...++.. ++....+.+..+|++.++++....+. + .++...+..
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQ 1200 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHH
Confidence 567788899999999999999999999887754 44444445888899988877533332 1 345566677
Q ss_pred HHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHH
Q 047471 242 IMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQH 321 (579)
Q Consensus 242 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 321 (579)
+...|...|++++|..+|... ..|..+...+++.|++++|.+.+++.. +..+|..+..+|...|++..
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999999986 479999999999999999999998762 45788888888888888888
Q ss_pred HHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCC---ChhhHHHHHHHHHhc--CChHHHHHHHHHHH
Q 047471 322 GKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHR---NVVSWNTIIAAHANH--RLGGSALKLFEQMK 396 (579)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~--~~~~~a~~~~~~m~ 396 (579)
|...... +..++..+..++..|.+.|.+++|+.+++..+.- ....|+-|...|++. ++..++.++|..-.
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 8776543 3345556678888889999999999999877542 334566666666654 23334444444222
Q ss_pred HCCCCC------CHHHHHHHHHHHhccCCHHHHHHHH-------------HHhHHHhCCCCChhHHHHHHHHHHhcC---
Q 047471 397 ATGIKP------DSVTFIGLLTACNHAGLVKEGEAYF-------------NSMEKTYGISPDIEHFTCLIDLLGRAG--- 454 (579)
Q Consensus 397 ~~~~~p------~~~~~~~ll~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 454 (579)
. ++| +...|..++..|.+.|+++.|.... ...+ .-..++..|...+.-|...+
T Consensus 1344 n--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i---~kv~n~elyykai~Fyl~~~P~~ 1418 (1630)
T 1xi4_A 1344 N--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYLEFKPLL 1418 (1630)
T ss_pred c--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh---cccccHHHHHHHHHHHHhhChHH
Confidence 2 222 3556777777788888888777221 1111 12335556666666555555
Q ss_pred ------------ChHHHHHHHHhC
Q 047471 455 ------------KLLEAEEYTKKF 466 (579)
Q Consensus 455 ------------~~~~A~~~~~~~ 466 (579)
+++++.++|.+.
T Consensus 1419 lndLl~~l~~rlD~~R~V~l~~~~ 1442 (1630)
T 1xi4_A 1419 LNDLLMVLSPRLDHTRAVNYFSKV 1442 (1630)
T ss_pred HHHHHHHhhhcCChHHHHHHHHHc
Confidence 677777776643
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=5.8e-17 Score=162.89 Aligned_cols=351 Identities=10% Similarity=-0.024 Sum_probs=240.4
Q ss_pred cCChhHHHHHhccCC-CCCcchHHHHHHHHHh----CCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcc----cCccc
Q 047471 148 VGYSSDALLVYGEAF-EPNLVSFNALIAGFVE----NQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSV----SNDLR 218 (579)
Q Consensus 148 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~ 218 (579)
.+++++|...|++.. ..+...+..|...|.. .+++++|...|++..+.| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 444445544444322 1233344444444444 455555555555554432 22233333333333 44555
Q ss_pred chhHHHHHHHHhCCCCChhHHhHHHHHHHh----cCChhHHHHHHHhcCC-CCcchHHHHHHHHHh----CCChHHHHHH
Q 047471 219 KGMILHCLTVKCKLESNPFVGNTIMALYSK----FNLIGEAEKAFRLIEE-KDLISWNTFIAACSH----CADYEKGLSV 289 (579)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 289 (579)
.|...++...+.| ++..+..+...|.. .+++++|.+.|+...+ .+..++..+...|.. .++.++|+..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 5555555554443 34445556666665 6678888888877654 356677777777777 7888888888
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHhC----cCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHh----cCChHHHHHHH
Q 047471 290 FKEMSNDHGVRPDDFTFASILAACAG----LASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAK----CGLISCSYKLF 361 (579)
Q Consensus 290 ~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 361 (579)
|++..+. | +...+..+...+.. .+++++|..+++...+.+ ++..+..+..+|.. .+++++|...|
T Consensus 210 ~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 210 YRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 8888765 3 44556666666654 778888888888887765 34556667777777 78899999999
Q ss_pred HccCC-CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHH
Q 047471 362 NEMLH-RNVVSWNTIIAAHANH-----RLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG---LVKEGEAYFNSMEK 432 (579)
Q Consensus 362 ~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~ 432 (579)
++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| ++++|..+|++..+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88854 4566777788888877 89999999999998865 4456666666666656 78999999999987
Q ss_pred HhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 047471 433 TYGISPDIEHFTCLIDLLGR----AGKLLEAEEYTKKFPLGQDPIVLGTLLSACRL----RRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~ 504 (579)
. .+...+..|...|.. .+++++|.++|++.....++..+..+...+.. .++.++|...|+++.+.+|+
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 4 467788888888888 89999999999987434567788888888887 89999999999999999854
Q ss_pred ---CCccHHHHHHHHHc
Q 047471 505 ---TTSPYVLLSNLYAS 518 (579)
Q Consensus 505 ---~~~~~~~l~~~~~~ 518 (579)
++.....++.++..
T Consensus 436 ~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTSCHH
T ss_pred CcCCHHHHHHHHhcCHh
Confidence 66666666665543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.8e-18 Score=165.94 Aligned_cols=282 Identities=11% Similarity=-0.033 Sum_probs=220.2
Q ss_pred HHhcCChhHHHH-HHHhcCC--C-----CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcC
Q 047471 246 YSKFNLIGEAEK-AFRLIEE--K-----DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLA 317 (579)
Q Consensus 246 ~~~~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 317 (579)
+.-.|++++|.+ .|+.... + +...+..+...+...|++++|+..|+++.+. .+.+...+..+..++...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCc
Confidence 344567788877 7775543 1 3456788888889999999999999998865 2446677888888888999
Q ss_pred ChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--CC-hhhHHH---------------HHHHH
Q 047471 318 SVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--RN-VVSWNT---------------IIAAH 379 (579)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------l~~~~ 379 (579)
++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.. |+ ...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999999888776 55777888888899999999999999988732 22 112211 13333
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (579)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..++.++...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999999853221 4788899999999999999999999999874 34567889999999999999999
Q ss_pred HHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CccHHHHHHHHHcCCChHHH
Q 047471 459 AEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT-----------TSPYVLLSNLYASDGMWGDV 525 (579)
Q Consensus 459 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 525 (579)
|.+.++++ ...| +...+..+...+...|++++|...++++++..|++ +..|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999986 3334 67888999999999999999999999999999887 78899999999999999999
Q ss_pred HHHHHHH
Q 047471 526 AGARKML 532 (579)
Q Consensus 526 ~~~~~~~ 532 (579)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9887643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=7.3e-16 Score=156.52 Aligned_cols=412 Identities=8% Similarity=0.009 Sum_probs=267.5
Q ss_pred CHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CCcchHHHHHHHH
Q 047471 99 NEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE--PNLVSFNALIAGF 176 (579)
Q Consensus 99 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 176 (579)
+...|..++.. .+.|+++.|..+++.+++. .+.+...|..++..+.+.|++++|..+|++... |+...|..++...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44567777763 6678888888888888764 234566778888888888888888888887553 5655666655422
Q ss_pred -HhCCCcchHHH----HHHHHHH-CCCCCCc-ccHHHHHHHhcc---------cCcccchhHHHHHHHHhCCCCChhHHh
Q 047471 177 -VENQQPEKGFE----VFKLMLR-QGLLPDR-FSFAGGLEICSV---------SNDLRKGMILHCLTVKCKLESNPFVGN 240 (579)
Q Consensus 177 -~~~~~~~~a~~----~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (579)
...|+++.|.+ +|+.... .|..|+. ..|...+..... .|+++.|..+|+..++.........|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34577777665 5555543 2444433 233333333322 455555666665555511000011121
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHh------hhC--CCCCCCH--------H
Q 047471 241 TIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEM------SND--HGVRPDD--------F 304 (579)
Q Consensus 241 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m------~~~--~~~~p~~--------~ 304 (579)
.........|. ..+..++. ...+++..|..++... .+. ..++|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 11111000000 00011100 1234566666666542 111 0134441 3
Q ss_pred HHHHHHHHHhC----cCCh----HHHHHHHHHHHHccCCCCcchHhHHHHHHHh-------cCChH-------HHHHHHH
Q 047471 305 TFASILAACAG----LASV----QHGKQIHAHLIRMRLNQDVGVGNALVNMYAK-------CGLIS-------CSYKLFN 362 (579)
Q Consensus 305 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~ 362 (579)
.|...+..... .++. +.+..+|+++.... |.++.+|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 34433332221 2232 46777888888764 6678888888888876 69987 8999999
Q ss_pred ccCC---C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCC
Q 047471 363 EMLH---R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-S-VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGI 436 (579)
Q Consensus 363 ~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 436 (579)
+..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+ . ..|..++..+.+.|++++|.++|++..+. .
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~ 386 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--A 386 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--T
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--c
Confidence 9864 3 466788899999999999999999999998 4564 3 47888888888899999999999999863 2
Q ss_pred CCChhHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----cH
Q 047471 437 SPDIEHFTCLIDL-LGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS----PY 509 (579)
Q Consensus 437 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~ 509 (579)
+.+...+...+.. +...|+.++|.++|++. ...| ++..|..++..+...|+.++|..+|+++++..|.++. .|
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 2233333332222 34689999999999986 3334 6788999999999999999999999999999877665 77
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 510 VLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
...+......|+.+.+..+.+++.+.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888899999999999988764
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=9.1e-16 Score=154.18 Aligned_cols=352 Identities=13% Similarity=0.032 Sum_probs=292.4
Q ss_pred CCcchHHHHHHHHHh----CCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcc----cCcccchhHHHHHHHHhCCCCC
Q 047471 164 PNLVSFNALIAGFVE----NQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSV----SNDLRKGMILHCLTVKCKLESN 235 (579)
Q Consensus 164 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 235 (579)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455666667777777 899999999999998864 45566677777777 889999999999998875 5
Q ss_pred hhHHhHHHHHHHh----cCChhHHHHHHHhcCCC-CcchHHHHHHHHHh----CCChHHHHHHHHHhhhCCCCCCCHHHH
Q 047471 236 PFVGNTIMALYSK----FNLIGEAEKAFRLIEEK-DLISWNTFIAACSH----CADYEKGLSVFKEMSNDHGVRPDDFTF 306 (579)
Q Consensus 236 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~ 306 (579)
+..+..|...|.. .+++++|.+.|+...+. +..++..+...|.. .++.++|+..|++..+. | +...+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~---~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 6777788888888 78999999999988764 56678888888887 78999999999999876 4 56677
Q ss_pred HHHHHHHhC----cCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHh----cCChHHHHHHHHccCC-CChhhHHHHHH
Q 047471 307 ASILAACAG----LASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAK----CGLISCSYKLFNEMLH-RNVVSWNTIIA 377 (579)
Q Consensus 307 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~ 377 (579)
..+...+.. .++.++|...+++..+.+ ++..+..+...|.. .+++++|...|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776 899999999999998875 45677778888886 7899999999999854 56667777888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 378 AHAN----HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHA-----GLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 378 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
.|.. .+++++|+..|++..+.| +...+..+...+... +++++|..++++..+. + +...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8887 899999999999998865 455666677777776 8999999999999874 3 5567788888
Q ss_pred HHHhcC---ChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc---
Q 047471 449 LLGRAG---KLLEAEEYTKKFPLGQDPIVLGTLLSACRL----RRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS--- 518 (579)
Q Consensus 449 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 518 (579)
.|...| +.++|.++|++.....++..+..+...+.. .+++++|..+++++.+.+ ++..+..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888766 889999999997434678888899999988 899999999999999875 57889999999998
Q ss_pred -CCChHHHHHHHHHHHhCCC
Q 047471 519 -DGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 519 -~g~~~~A~~~~~~~~~~~~ 537 (579)
.++.++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988764
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=1.2e-17 Score=157.55 Aligned_cols=288 Identities=9% Similarity=0.054 Sum_probs=122.5
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHH
Q 047471 147 KVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCL 226 (579)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 226 (579)
+.|++++|.+.++++..|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5666777777777775543 6777777777777777777777542 5666777777777777777777776666
Q ss_pred HHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHH
Q 047471 227 TVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTF 306 (579)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 306 (579)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT----------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhH
Confidence 5553 3445667778888888888888776664 356668888888888888888888888866 257
Q ss_pred HHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChH
Q 047471 307 ASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGG 386 (579)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 386 (579)
..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 77888888888888888888777 267778888888888888888877666554 34444556788888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC------ChhHHHHHHHHHHhcCChHHHH
Q 047471 387 SALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP------DIEHFTCLIDLLGRAGKLLEAE 460 (579)
Q Consensus 387 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~ 460 (579)
+|..+++...... +-....|+.+.-.+++- ++++..+.++...++-+++| +...|..+...|...++++.|.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 8888888877643 33455555555555542 33333333333333224444 4667888888899999999888
Q ss_pred HHHHhC
Q 047471 461 EYTKKF 466 (579)
Q Consensus 461 ~~~~~~ 466 (579)
..+-.-
T Consensus 303 ~tm~~h 308 (449)
T 1b89_A 303 ITMMNH 308 (449)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 765554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=6.7e-18 Score=163.10 Aligned_cols=261 Identities=10% Similarity=-0.064 Sum_probs=213.2
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHH
Q 047471 266 DLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALV 345 (579)
Q Consensus 266 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 345 (579)
+...|..+...+.+.|++++|+..|+++.+. .+.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3456888888999999999999999998865 24467788888899999999999999999998875 55678888999
Q ss_pred HHHHhcCChHHHHHHHHccCC--CC-----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 047471 346 NMYAKCGLISCSYKLFNEMLH--RN-----------VVSWNTIIAAHANHRLGGSALKLFEQMKATGIK-PDSVTFIGLL 411 (579)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll 411 (579)
.+|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998843 21 223344578899999999999999999985322 1588899999
Q ss_pred HHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHH
Q 047471 412 TACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVV 489 (579)
Q Consensus 412 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 489 (579)
..+...|++++|...++++.+. .+.+..++..++.+|...|++++|.+.++++ ...| +..++..+...+...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999984 4557889999999999999999999999986 3345 5788999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 490 IGERLAKQLFHLQPT------------TTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 490 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
+|...+++++++.|+ +...|..++.++...|+.+.+....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998876 367799999999999999988887765
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.9e-16 Score=146.57 Aligned_cols=271 Identities=9% Similarity=-0.025 Sum_probs=216.7
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCc----chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCC
Q 047471 243 MALYSKFNLIGEAEKAFRLIEEKDL----ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLAS 318 (579)
Q Consensus 243 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 318 (579)
++-....|+++.|+..++.+...++ .....+.++|...|+++.|+..++. .-+|+..++..+...+...++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCc
Confidence 3445667999999999988766432 2445678899999999999986654 235677888889999999999
Q ss_pred hHHHHHHHHHHHHccC-CCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047471 319 VQHGKQIHAHLIRMRL-NQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKA 397 (579)
Q Consensus 319 ~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 397 (579)
.+.|.+.++.+...+. |.++..+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999988764 44566677778999999999999999999 56778899999999999999999999999998
Q ss_pred CCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-Ch
Q 047471 398 TGIKPDSVTF---IGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DP 472 (579)
Q Consensus 398 ~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 472 (579)
. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| ++
T Consensus 159 ~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 Q--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp H--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred h--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 5 4553211 22334445669999999999999985 5678889999999999999999999999996 4445 67
Q ss_pred hhHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHH
Q 047471 473 IVLGTLLSACRLRRDVVI-GERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGA 528 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 528 (579)
.++..++..+...|+.++ +.++++++++++|+++.+. ....+.+.++++..-
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 889999999999999875 6789999999999987543 345555555555443
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.2e-15 Score=154.91 Aligned_cols=429 Identities=11% Similarity=0.040 Sum_probs=265.2
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCH
Q 047471 25 HAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE--R-NLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNE 100 (579)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~ 100 (579)
++..++.. +-+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... |+.
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~ 79 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHI 79 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCH
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Confidence 44555544 346778888888 4778999999999999875 4 4457888999999999999999999999887 887
Q ss_pred hhHHHHHHHH-hccCChHHHHH----HHHHHHHh-cCCC-chhHHHHHHHHHHh---------cCChhHHHHHhccCCC-
Q 047471 101 YIFASAISAC-AGIQSLVKGQQ----IHAYSLKF-GYAS-ISFVGNSLISMYMK---------VGYSSDALLVYGEAFE- 163 (579)
Q Consensus 101 ~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~- 163 (579)
..|...+... ...|+.+.|.+ +++..+.. |..| +...|...+....+ .|+++.|..+|++...
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~ 159 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN 159 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc
Confidence 7776666533 34567776665 55555542 4443 34566666655443 4555555555555332
Q ss_pred CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHH
Q 047471 164 PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIM 243 (579)
Q Consensus 164 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 243 (579)
|... ...+-..+.. ++... | ..+...++. ...+++..|..++....
T Consensus 160 P~~~-~~~~~~~~~~---~e~~~---------~----~~~~~~~l~--~~~~~~~~A~~~~~~~~--------------- 205 (530)
T 2ooe_A 160 PMIN-IEQLWRDYNK---YEEGI---------N----IHLAKKMIE--DRSRDYMNARRVAKEYE--------------- 205 (530)
T ss_dssp CCTT-HHHHHHHHHH---HHHHH---------C----HHHHHHHHH--TTHHHHHHHHHHHHHHH---------------
T ss_pred hhhh-HHHHHHHHHH---HHHhh---------c----hhHHHHHHH--HhhHHHHHHHHHHHHHH---------------
Confidence 2110 0000000100 00000 0 000000000 00111222222222110
Q ss_pred HHHHhcCChhHHHHHHHhcC---CCC--------cchHHHHHHHHHhC----CCh----HHHHHHHHHhhhCCCCCCCHH
Q 047471 244 ALYSKFNLIGEAEKAFRLIE---EKD--------LISWNTFIAACSHC----ADY----EKGLSVFKEMSNDHGVRPDDF 304 (579)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~---~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~~p~~~ 304 (579)
...+.++... .|+ ...|...+...... ++. .++..+|++.... .+-+..
T Consensus 206 ----------~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~ 273 (530)
T 2ooe_A 206 ----------TVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPD 273 (530)
T ss_dssp ----------HHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHH
T ss_pred ----------HHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHH
Confidence 0000111100 011 12333333322221 222 3667777777654 233455
Q ss_pred HHHHHHHHHhC-------cCChH-------HHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC--CCC
Q 047471 305 TFASILAACAG-------LASVQ-------HGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML--HRN 368 (579)
Q Consensus 305 ~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~ 368 (579)
.|......+.+ .|+++ .|..++++..+.-.|.+...+..++..+.+.|++++|..+|+++. .|+
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 353 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence 66666655553 67776 788888887763335567788888888888899999999998873 343
Q ss_pred -h-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHHhCCCCChhHHHH
Q 047471 369 -V-VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA-CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTC 445 (579)
Q Consensus 369 -~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
. ..|..++..+.+.|++++|..+|++..+.. +.+...|...... +...|+.++|..+|++..+.. +.+...|..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~ 430 (530)
T 2ooe_A 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLA 430 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHH
Confidence 2 478888888888999999999999998852 2233333332222 345899999999999998853 446788999
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CC---CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 446 LIDLLGRAGKLLEAEEYTKKF-PL---GQD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~-~~---~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
++..+.+.|+.++|..+|++. .. .|+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999986 22 222 237888888888899999999999999998885
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=3.3e-17 Score=155.52 Aligned_cols=258 Identities=10% Similarity=-0.054 Sum_probs=188.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHH
Q 047471 269 SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMY 348 (579)
Q Consensus 269 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 348 (579)
.+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3445555555666666666666665543 12244455555555666666666666666665543 33455555666666
Q ss_pred HhcCChHHHHHHHHccCC--C-ChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047471 349 AKCGLISCSYKLFNEMLH--R-NVVSWNTI--------------IA-AHANHRLGGSALKLFEQMKATGIKPDSVTFIGL 410 (579)
Q Consensus 349 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 410 (579)
...|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666666522 1 11122222 22 3777889999999999998863 3367888899
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDV 488 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 488 (579)
...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999874 3456788999999999999999999999986 3334 577888999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 489 VIGERLAKQLFHLQPT------------TTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 489 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
++|...++++++..|+ ++..+..++.++...|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999998 7889999999999999999999988754
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.6e-17 Score=159.15 Aligned_cols=276 Identities=12% Similarity=0.021 Sum_probs=204.6
Q ss_pred ChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHhCcCChHHHHHHHH
Q 047471 251 LIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLS-VFKEMSNDHGVRP--DDFTFASILAACAGLASVQHGKQIHA 327 (579)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (579)
.++.+...|+.+...+.. ++...|++++|+. .|++......-.| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443322 3445588999998 8887654312222 34567788889999999999999999
Q ss_pred HHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-
Q 047471 328 HLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD- 403 (579)
Q Consensus 328 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~- 403 (579)
.+.+.. +.+..++..+..+|.+.|++++|...|+++. ..+..++..+..++...|++++|...++++.+.. |+
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCc
Confidence 999875 6677888999999999999999999999884 3467789999999999999999999999999853 33
Q ss_pred HHHHHH---------------HHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 047471 404 SVTFIG---------------LLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-P 467 (579)
Q Consensus 404 ~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 467 (579)
...+.. .+..+...|++++|...++++.+.....++..++..++..|...|++++|.+.++++ .
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222211 233444889999999999999986222225788999999999999999999999986 3
Q ss_pred CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 468 LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 468 ~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
..| ++..+..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...++++.+..
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 334 578899999999999999999999999999999999999999999999999999999999987643
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.9e-16 Score=158.77 Aligned_cols=366 Identities=12% Similarity=-0.031 Sum_probs=190.5
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCC------------CCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCC---CC
Q 047471 134 ISFVGNSLISMYMKVGYSSDALLVYGEAF------------EPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQG---LL 198 (579)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~ 198 (579)
...+|+.|...+...|++++|++.|++.. .....+|+.+...|...|++++|...+++..+.. ..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567777777777777777777765421 1234567778888888888888888887765420 00
Q ss_pred CCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhc--CChhHHHHHHHhcCC--C-CcchHHHH
Q 047471 199 PDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKF--NLIGEAEKAFRLIEE--K-DLISWNTF 273 (579)
Q Consensus 199 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--~-~~~~~~~l 273 (579)
|.. .....++..+..++... +++++|.+.|++..+ | ++..+..+
T Consensus 130 ~~~-------------------------------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~ 178 (472)
T 4g1t_A 130 PYR-------------------------------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGL 178 (472)
T ss_dssp SSC-------------------------------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred ccc-------------------------------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 100 00111222222222222 234455555544432 2 22222222
Q ss_pred HHH---HHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh----CcCChHHHHHHHHHHHHccCCCCcchHhHHHH
Q 047471 274 IAA---CSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACA----GLASVQHGKQIHAHLIRMRLNQDVGVGNALVN 346 (579)
Q Consensus 274 ~~~---~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 346 (579)
..+ +...++.++|++.+++..+. . +.+...+..+...+. ..++++.|.+.+++..... +.+..++..+..
T Consensus 179 ~~~~~~l~~~~~~~~al~~~~~al~l-~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~ 255 (472)
T 4g1t_A 179 AIASYRLDNWPPSQNAIDPLRQAIRL-N-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAK 255 (472)
T ss_dssp HHHHHHHHHSCCCCCTHHHHHHHHHH-C-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhc-C-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHH
Confidence 222 22334455555555554432 1 112223322222222 2344555555555555443 334445555555
Q ss_pred HHHhcCChHHHHHHHHccCC--C-ChhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCH
Q 047471 347 MYAKCGLISCSYKLFNEMLH--R-NVVSWNTIIAAHAN-------------------HRLGGSALKLFEQMKATGIKPDS 404 (579)
Q Consensus 347 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~ 404 (579)
.|...|++++|...|++..+ | +..++..+..+|.. .+.++.|...+++..+.. +.+.
T Consensus 256 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 334 (472)
T 4g1t_A 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLF 334 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTC
T ss_pred HHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchh
Confidence 55556666666655555522 2 22333333333321 234567888888887742 2345
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChh----HHHHHHH-HHHhcCChHHHHHHHHhC-CCCCChhhHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIE----HFTCLID-LLGRAGKLLEAEEYTKKF-PLGQDPIVLGTL 478 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 478 (579)
.++..+...+...|++++|...|++..+. .|+.. .+..+.. .+...|+.++|++.+++. ...|+.....
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~-- 409 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-- 409 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH--
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH--
Confidence 66778888899999999999999998864 23322 2223332 234678999999988875 4556543322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEE
Q 047471 479 LSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMI 546 (579)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 546 (579)
+....+..++++.++.+|+++.+|..++.+|...|++++|++.+++..+.+...+...+|+
T Consensus 410 -------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 -------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234556788889999999999999999999999999999999999998876655555665
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=3.4e-17 Score=158.15 Aligned_cols=232 Identities=10% Similarity=-0.059 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHH
Q 047471 302 DDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAA 378 (579)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 378 (579)
+...+..+...+.+.|++++|..+++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557788889999999999999999999876 66788999999999999999999999999843 457789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDS-----------VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLI 447 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 447 (579)
|...|++++|...++++.+. .|+. ..+..+...+...|++++|...++++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 3432 2233457788999999999999999998632222688999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHH
Q 047471 448 DLLGRAGKLLEAEEYTKKF-PLG-QDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDV 525 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 525 (579)
..|...|++++|.+.++++ ... .+..++..+...+...|++++|+..++++++..|+++..+..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 333 46788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 047471 526 AGARKMLKDSG 536 (579)
Q Consensus 526 ~~~~~~~~~~~ 536 (579)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997643
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=8.7e-17 Score=148.90 Aligned_cols=247 Identities=9% Similarity=0.001 Sum_probs=202.4
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhc
Q 047471 274 IAACSHCADYEKGLSVFKEMSNDHGVRPDD--FTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKC 351 (579)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 351 (579)
++-....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3455678999999999988753 35554 3456678899999999999976654 2466778888899999999
Q ss_pred CChHHHHHHHHccC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047471 352 GLISCSYKLFNEML----HR-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAY 426 (579)
Q Consensus 352 g~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 426 (579)
++.++|++.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999873 24 455677777899999999999999987 45788898999999999999999999
Q ss_pred HHHhHHHhCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047471 427 FNSMEKTYGISPDIEHF---TCLIDLLGRAGKLLEAEEYTKKF--PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 427 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
++++.+. .|+.... ..++..+...|++++|..+|+++ ..+.++..++.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 3553211 22334455569999999999997 23457788999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHcCCChHH-HHHHHHHHHhCC
Q 047471 502 QPTTTSPYVLLSNLYASDGMWGD-VAGARKMLKDSG 536 (579)
Q Consensus 502 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 536 (579)
+|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999986 578888887654
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=8.4e-15 Score=146.67 Aligned_cols=234 Identities=12% Similarity=0.005 Sum_probs=126.8
Q ss_pred cCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHhCcCChHHHHH
Q 047471 249 FNLIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPD-DFTFASILAACAGLASVQHGKQ 324 (579)
Q Consensus 249 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 324 (579)
.+++++|.+.++.... .+..++..+...|...|++++|+..+++..+. .|+ ...+..+..++...+...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~y~~~~~~~---- 298 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLHCQIGCCYRAKVFQV---- 298 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHh----
Confidence 3556677777766543 34567788888899999999999999998765 343 444554444432111100
Q ss_pred HHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 047471 325 IHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIK 401 (579)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 401 (579)
.... . ..........+..+.|...|+... ..+...+..+...|...|++++|+..|++..+....
T Consensus 299 -----~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 299 -----MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp -----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred -----hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 0000 0 001111112234567777777763 345567888999999999999999999999985433
Q ss_pred CCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCChhhHH
Q 047471 402 PDSV--TFIGLLT-ACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-P-LGQDPIVLG 476 (579)
Q Consensus 402 p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~ 476 (579)
|... .+..+.. .....|+.++|+..|++..+. .|+........ ..+.+++++. . .+.++.++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHH
Confidence 3221 2222222 245789999999999998863 45543322222 2233333332 2 234678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 477 TLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 477 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
.+...+...|++++|++.|+++++++|.+|.++..++
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999999999999999999888776655
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=4.9e-16 Score=147.39 Aligned_cols=259 Identities=8% Similarity=-0.059 Sum_probs=168.4
Q ss_pred HhHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhC
Q 047471 239 GNTIMALYSKFNLIGEAEKAFRLIEE---KDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAG 315 (579)
Q Consensus 239 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 315 (579)
+..+...+...|++++|...|+.+.+ .+...|..+...+...|++++|...|+++.+. .+.+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHHHH
Confidence 34455556666666666666665543 23445666666666667777777777666554 12345556666666666
Q ss_pred cCChHHHHHHHHHHHHccCCCCcchHhHH--------------HH-HHHhcCChHHHHHHHHccC---CCChhhHHHHHH
Q 047471 316 LASVQHGKQIHAHLIRMRLNQDVGVGNAL--------------VN-MYAKCGLISCSYKLFNEML---HRNVVSWNTIIA 377 (579)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~ 377 (579)
.|++++|...++.+.+.. +.+...+..+ .. .+...|++++|...++++. ..+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 777777777776666543 2222222222 22 3556677777777777763 234566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLL 457 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 457 (579)
.+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+..++...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHH
Confidence 7888888888888888877742 234667777777788888888888888887764 2445667777888888888888
Q ss_pred HHHHHHHhC-CCCC-------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 458 EAEEYTKKF-PLGQ-------------DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 458 ~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
+|.+.++++ ...| +...+..+..++...|++++|..+++++++..|
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 888887775 2222 356677777788888888888888776665443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2e-15 Score=137.76 Aligned_cols=218 Identities=6% Similarity=-0.074 Sum_probs=161.7
Q ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--C----C----hhhHHH
Q 047471 305 TFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--R----N----VVSWNT 374 (579)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 374 (579)
.+..+...+...|++++|...++.+.+.. .+..++..+..+|...|++++|...++++.+ | + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444455555555555555555555554 4455555566666666666666666665522 1 1 456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG 454 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (579)
+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 888888888889999988888884 4553 235566788899999988876 33445667788888899999
Q ss_pred ChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 455 KLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 455 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
++++|.+.++++ .. +.++..+..+...+...|++++|...++++++.+|+++..+..++.++...|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988886 22 3467788888889999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 047471 533 KDS 535 (579)
Q Consensus 533 ~~~ 535 (579)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=2e-15 Score=133.48 Aligned_cols=194 Identities=13% Similarity=0.025 Sum_probs=156.3
Q ss_pred CCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 047471 335 NQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGL 410 (579)
Q Consensus 335 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 410 (579)
|+++..+..+...+.+.|++++|...|++.++ .+...+..+..++.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56777888888899999999999999998843 35567888889999999999999999999985 44 57788888
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHH
Q 047471 411 LTACNHA-----------GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLGTL 478 (579)
Q Consensus 411 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 478 (579)
...+... |++++|+..+++..+. .+.+...+..+..++...|++++|.+.|++. ....++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999974 3446778889999999999999999999986 222778889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 479 LSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 479 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
..++...|++++|+..++++++.+|+++..+..++.++...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998865
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.8e-15 Score=135.91 Aligned_cols=234 Identities=10% Similarity=-0.046 Sum_probs=188.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCC--CC----cchH
Q 047471 268 ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLN--QD----VGVG 341 (579)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 341 (579)
..|..+...+...|++++|+..|++..+. . .+...+..+..++...|++++|...++.+.+.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35666777888888888888888888776 4 66777888888888888888888888888765421 11 5677
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLH--RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAG 418 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 418 (579)
..+...|...|++++|...|+++.+ |+ ...+...|++++|...++++... .| +...+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 8888889999999999999988843 33 23566678899999999999884 44 4667888888899999
Q ss_pred CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047471 419 LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAK 496 (579)
Q Consensus 419 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~ 496 (579)
++++|...++++.+. .+.+...+..+..++...|++++|.+.++++ ...| ++..+..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999884 3556788999999999999999999999886 3334 57788889999999999999999999
Q ss_pred HHHhcC------CCCCccHHHHHHH
Q 047471 497 QLFHLQ------PTTTSPYVLLSNL 515 (579)
Q Consensus 497 ~~~~~~------p~~~~~~~~l~~~ 515 (579)
+++++. |++...+..+..+
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHh
Confidence 999998 7776666665543
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=161.46 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=88.2
Q ss_pred cchHhHHHHHHHhcCChHHHHHHHHcc-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047471 338 VGVGNALVNMYAKCGLISCSYKLFNEM-------LHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGL 410 (579)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 410 (579)
..+|+++|++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346677777777777777777777554 3577778888888888888888888888888888888888888888
Q ss_pred HHHHhccCC-HHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047471 411 LTACNHAGL-VKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 411 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHH
Confidence 888888776 46777888888877 8888888888777665554333
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=9.7e-15 Score=134.64 Aligned_cols=242 Identities=10% Similarity=-0.084 Sum_probs=187.1
Q ss_pred hCCChHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHH
Q 047471 279 HCADYEKGLSVFKEMSNDHGVRP--DDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISC 356 (579)
Q Consensus 279 ~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 356 (579)
..|++++|+..|+++.+.....+ +...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45778888888888876511111 35667777888888899999999998888775 5567788888999999999999
Q ss_pred HHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 357 SYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 357 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
|...|+++.+ .+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998843 45678889999999999999999999999984 455444444555567779999999999888874
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 434 YGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 34444444 4777788888899999998886 33332 467888889999999999999999999999998744
Q ss_pred cHHHHHHHHHcCCChHHHHHHH
Q 047471 508 PYVLLSNLYASDGMWGDVAGAR 529 (579)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~ 529 (579)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 4467888889999988776
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.2e-13 Score=136.58 Aligned_cols=380 Identities=9% Similarity=-0.023 Sum_probs=206.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCh---hHHHHHhccCCCCCcchHHHHHHHHHhCC---
Q 047471 107 ISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYS---SDALLVYGEAFEPNLVSFNALIAGFVENQ--- 180 (579)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~--- 180 (579)
...+.+.|++++|.+.++...+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 344556677777777777776665 333445566667777777 89999998876667777777777566555
Q ss_pred --CcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCCh----hH
Q 047471 181 --QPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLI----GE 254 (579)
Q Consensus 181 --~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 254 (579)
++++|+..|++..+.|.. ..+..+...+...+..+.+...+..........++.....+...|...+.+ +.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 678999999998886532 255556666665555444433333333222122344555666666666633 33
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Q 047471 255 AEKAFRLIEEKDLISWNTFIAACSHCA---DYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIR 331 (579)
Q Consensus 255 a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (579)
+..+++.....++.++..+...|...| +.++|+..|++..+. | .++...+..+...+....
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~-------------- 227 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDAT-------------- 227 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGG--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCC--------------
Confidence 444444444555556666666666666 666666666666554 3 233333233333333220
Q ss_pred ccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047471 332 MRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAA-H--ANHRLGGSALKLFEQMKATGIKPDSVTFI 408 (579)
Q Consensus 332 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 408 (579)
...+++++|...|++....++..+..|... + ...+++++|+..|++..+.| +...+.
T Consensus 228 -----------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~ 287 (452)
T 3e4b_A 228 -----------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAEL 287 (452)
T ss_dssp -----------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred -----------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 001344445555444442233444445444 3 34678888888888888765 455555
Q ss_pred HHHHHHhccC-----CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHH
Q 047471 409 GLLTACNHAG-----LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR----AGKLLEAEEYTKKFPLGQDPIVLGTLL 479 (579)
Q Consensus 409 ~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~ 479 (579)
.+...|. .| ++++|..+|++.. +-+...+..|...|.. ..++++|.++|++.....++.....+.
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg 361 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIA 361 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHH
Confidence 5555555 44 8888888888776 2356667777777765 348888888888874344566666666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 480 SACRL----RRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 480 ~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..|.. ..|.++|..+++++.+.++.........+......++..+|..+.++..+
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66653 45888999999998887765333222222222333456677777766544
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.2e-13 Score=136.56 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=109.8
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCh---hHHHHHhcccCCCCcccHHHHHHHHHhcC-
Q 047471 7 SLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKM---ILARKVFDEMSERNLVSWSAMISGHHQAG- 82 (579)
Q Consensus 7 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g- 82 (579)
.+...+.+.|++++|.++|+...+.| +...+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788999999999999998876 345566677777778888 89999999988777788888888666665
Q ss_pred ----ChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHH---HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhH--
Q 047471 83 ----EHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVK---GQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSD-- 153 (579)
Q Consensus 83 ----~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-- 153 (579)
++++|+..|++....-+...+..+...+...+..+. +.+.+......| +......|...|...+.++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 778999999988776344466666666665554433 334444443333 45566677777777775444
Q ss_pred --HHHHhccCCCCCcchHHHHHHHHHhCC---CcchHHHHHHHHHHCC
Q 047471 154 --ALLVYGEAFEPNLVSFNALIAGFVENQ---QPEKGFEVFKLMLRQG 196 (579)
Q Consensus 154 --A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g 196 (579)
+..+++.....+...+..|...|...| ++++|+..|+...+.|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 444455555556667778888888888 7888888888887765
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.2e-14 Score=131.97 Aligned_cols=241 Identities=12% Similarity=0.050 Sum_probs=138.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcc----hHhHHHHH
Q 047471 272 TFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVG----VGNALVNM 347 (579)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~ 347 (579)
.....+...|++++|+..|++..+. . +.+...+..+..++...|++++|...++.+.+.. ++.. .+..+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~-~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAK-K-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHT-T-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHH
Confidence 3344445555555555555555433 1 1122244444445555555555555555555422 2221 24555555
Q ss_pred HHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 047471 348 YAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEG 423 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a 423 (579)
|...|++++|...|++.. ..+...|..+...|...|++++|...+++..+. .| +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666552 223445666666666677777777777666654 33 344555555233334477777
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCCh------hhHHHHHHHHHhcCCHHH
Q 047471 424 EAYFNSMEKTYGISPDIEHFTCLIDLLGRAGK---LLEAEEYTKKF----PLGQDP------IVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~~~l~~~~~~~~~~~~ 490 (579)
...++++.+. .+.+...+..+..++...|+ +++|...++++ ...|++ ..+..+...+...|++++
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 7777777763 23345566666666766666 66666666654 122332 456677788888999999
Q ss_pred HHHHHHHHHhcCCCCCccHHHHHHHHHcCC
Q 047471 491 GERLAKQLFHLQPTTTSPYVLLSNLYASDG 520 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 520 (579)
|...++++++++|+++.....+..+....+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999888877776655544
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=160.62 Aligned_cols=149 Identities=12% Similarity=0.110 Sum_probs=96.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhh---hCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHH
Q 047471 268 ISWNTFIAACSHCADYEKGLSVFKEMS---NDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNAL 344 (579)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 344 (579)
.+||++|.+||+.|+.++|.++|.+|. .. |+.||..||++||.++++.|++++|.++|++|.+.|+.||..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~k-G~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT---- 202 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK-RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS---- 202 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHH-HTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH----
Confidence 467777777777777777777776553 23 5667777776666666666666666666666666666555555
Q ss_pred HHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047471 345 VNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLG-GSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEG 423 (579)
Q Consensus 345 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 423 (579)
|+++|.++++.|+. ++|.++|++|.+.|+.||..+|++++..+.+. ..
T Consensus 203 ---------------------------YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~v 251 (1134)
T 3spa_A 203 ---------------------------YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TV 251 (1134)
T ss_dssp ---------------------------HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HH
T ss_pred ---------------------------HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HH
Confidence 55555556666654 67889999999999999999998887655543 44
Q ss_pred HHHHHHhHHHhCCCCC------hhHHHHHHHHHHhcC
Q 047471 424 EAYFNSMEKTYGISPD------IEHFTCLIDLLGRAG 454 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 454 (579)
++..+++.. ++.|+ ..+...|.+.|.+.+
T Consensus 252 L~~Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 252 LKAVHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 444455533 44443 334444556666544
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=5e-13 Score=122.95 Aligned_cols=217 Identities=10% Similarity=-0.053 Sum_probs=130.0
Q ss_pred HHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHh----cCChHHHHHHHHccCC-CChhhHHHHHHHHHh-
Q 047471 308 SILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAK----CGLISCSYKLFNEMLH-RNVVSWNTIIAAHAN- 381 (579)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~- 381 (579)
.+...+...|++++|...++...+. .+...+..+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 87 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 3333344444444444444444431 122333444444444 5555555555555422 244455555666666
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh--
Q 047471 382 ---HRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH----AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR-- 452 (579)
Q Consensus 382 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 452 (579)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+...|..
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTS
T ss_pred CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCC
Confidence 667777777777666653 45556666666666 67777777777776653 2 44556666666666
Q ss_pred --cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc----CCCh
Q 047471 453 --AGKLLEAEEYTKKFPLGQDPIVLGTLLSACRL----RRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS----DGMW 522 (579)
Q Consensus 453 --~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 522 (579)
.+++++|.+.+++.....++..+..+...+.. .+++++|...++++.+.+| +..+..++.+|.. .|++
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence 67777777777665322345566666666766 7777777777777777765 4567777777777 7777
Q ss_pred HHHHHHHHHHHhCC
Q 047471 523 GDVAGARKMLKDSG 536 (579)
Q Consensus 523 ~~A~~~~~~~~~~~ 536 (579)
++|.+.+++..+.+
T Consensus 239 ~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 239 KQAIENFKKGCKLG 252 (273)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 77777777776554
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=3.2e-14 Score=128.41 Aligned_cols=140 Identities=13% Similarity=-0.003 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444455555555555444431 123344444444445555555555555554442 122334444444444
Q ss_pred HhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 451 GRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 451 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
...|++++|.+.++++ .. +.+..++..+...+...|++++|...++++++.+|+++..+..+.
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 4445555554444443 11 123344444444444555555555555555555555444444333
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=4.2e-13 Score=121.85 Aligned_cols=161 Identities=13% Similarity=0.002 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLL 450 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 450 (579)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+. +..| +...+..++..+
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~ 151 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVS 151 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHH
Confidence 3333333444444444444444443321 112333333334444444444444444444331 1122 223333344444
Q ss_pred HhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHH
Q 047471 451 GRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGA 528 (579)
Q Consensus 451 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 528 (579)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++..|+++..+..++.++...|++++|.++
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 4444444444444433 1111 2333444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHh
Q 047471 529 RKMLKD 534 (579)
Q Consensus 529 ~~~~~~ 534 (579)
++++.+
T Consensus 232 ~~~~~~ 237 (252)
T 2ho1_A 232 GLQLKR 237 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=2e-13 Score=125.54 Aligned_cols=228 Identities=8% Similarity=-0.049 Sum_probs=187.6
Q ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--CChh----hHHHHHHH
Q 047471 305 TFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--RNVV----SWNTIIAA 378 (579)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 378 (579)
.+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...++++.+ ++.. .|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556677889999999999999999875 45666888899999999999999999998854 3333 38889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (579)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+ ..+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999853 23567888999999999999999999999986 344566777777734445569999
Q ss_pred HHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CccHHHHHHHHHcCCChHHH
Q 047471 459 AEEYTKKF-PLGQ-DPIVLGTLLSACRLRRD---VVIGERLAKQLFHLQ---PTT-----TSPYVLLSNLYASDGMWGDV 525 (579)
Q Consensus 459 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 525 (579)
|.+.++++ ...| +...+..+...+...|+ +++|...++++++.. |+. ...|..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 3344 46777778888888888 888999999999876 442 25788899999999999999
Q ss_pred HHHHHHHHhCC
Q 047471 526 AGARKMLKDSG 536 (579)
Q Consensus 526 ~~~~~~~~~~~ 536 (579)
.+.+++..+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999998754
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.5e-13 Score=123.32 Aligned_cols=205 Identities=13% Similarity=0.063 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHH
Q 047471 303 DFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAH 379 (579)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 379 (579)
...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++. ..+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4667888888999999999999999998875 5567888899999999999999999999884 34667888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (579)
...|++++|..+++++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998844455 4677888888999999999999999999885 34567888999999999999999
Q ss_pred HHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 459 AEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 459 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
|.+.++++ ...| +...+..+...+...|+.++|.++++++.+..|+++....
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999986 3334 5677888888899999999999999999999999876543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.7e-13 Score=120.63 Aligned_cols=196 Identities=13% Similarity=0.008 Sum_probs=130.9
Q ss_pred cchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047471 338 VGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC 414 (579)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 414 (579)
+.++..+...+...|++++|...|+++. ..+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3444555556666666666666666552 2234556666677777777777777777776642 23456666677777
Q ss_pred hcc-CCHHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHH
Q 047471 415 NHA-GLVKEGEAYFNSMEKTYGISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 415 ~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 490 (579)
... |++++|...++++.+. +..| +...+..+..++...|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 7777777777777652 2223 2456666777777777777777777765 2223 45667777777777788888
Q ss_pred HHHHHHHHHhcCC-CCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 491 GERLAKQLFHLQP-TTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 491 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8888888877777 77777777777777788888877777777543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=7.2e-14 Score=126.08 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=155.0
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA 413 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 413 (579)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677777888888888888887743 356678888889999999999999999998853 3367888889999
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIG 491 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A 491 (579)
+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ .. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999885 3557788899999999999999999999986 32 34677888899999999999999
Q ss_pred HHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 492 ERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 492 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
...++++++..|+++..+..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999997653
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=3.9e-13 Score=128.61 Aligned_cols=244 Identities=11% Similarity=0.091 Sum_probs=193.0
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC-CHHHHHHHHHHHhCcCC-hHHHHHHHHHHHHccCCCCcchHhHHH
Q 047471 268 ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRP-DDFTFASILAACAGLAS-VQHGKQIHAHLIRMRLNQDVGVGNALV 345 (579)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 345 (579)
..|..+...+...|++++|+..|++.... .| +...|..+..++...|+ +++|...++++.+.. +.+..+|..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45677777788888888888888888754 34 45667777778888886 888888888888876 55677888888
Q ss_pred HHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHH
Q 047471 346 NMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH-AGLVK 421 (579)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~ 421 (579)
.++...|++++|+..|++++. .+...|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 889999999999999998843 456788888899999999999999999999853 2257788888888888 56657
Q ss_pred HH-----HHHHHHhHHHhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC-------
Q 047471 422 EG-----EAYFNSMEKTYGISPDIEHFTCLIDLLGRAG--KLLEAEEYTKKFPLGQ-DPIVLGTLLSACRLRR------- 486 (579)
Q Consensus 422 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------- 486 (579)
+| +..++++++. .+-+...|..+..++...| ++++|.+.+.++...| ++..+..++..+...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 5888888874 3446778888888888888 6899999888875445 4567778888887763
Q ss_pred -C-HHHHHHHHHHH-HhcCCCCCccHHHHHHHHHc
Q 047471 487 -D-VVIGERLAKQL-FHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 487 -~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 518 (579)
+ .++|+++++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999998888888886654
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=7.9e-13 Score=117.57 Aligned_cols=206 Identities=12% Similarity=0.009 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHH
Q 047471 304 FTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHA 380 (579)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 380 (579)
..+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++. ..+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344444455555555555555555555443 3334455566666666666666666666652 234556777888888
Q ss_pred hc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047471 381 NH-RLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 381 ~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (579)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence 88 899999999988887333443 567777888888999999999999988874 34457788888899999999999
Q ss_pred HHHHHHhC-CCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHH
Q 047471 459 AEEYTKKF-PLG--QDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLL 512 (579)
Q Consensus 459 A~~~~~~~-~~~--p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 512 (579)
|.+.++++ ... .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99988886 222 3556666677777889999999999999999999887655443
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=4.4e-13 Score=118.38 Aligned_cols=192 Identities=13% Similarity=0.004 Sum_probs=97.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHH
Q 047471 268 ISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNM 347 (579)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 347 (579)
..+..+...+.+.|++++|+..|++..+. -+.+...+..+..++.+.|++++|...+++..+.. |.+...+..+..+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34455555555566666666666655533 12234445555555555555555555555555543 3344455555555
Q ss_pred HHhc-----------CChHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047471 348 YAKC-----------GLISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA 413 (579)
Q Consensus 348 ~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 413 (579)
+... |++++|+..|++..+ | +...|..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 555555555555521 2 33445555556666666666666666666544 455555556666
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
+...|++++|...|+++.+. .+.+...+..+..++...|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666552 2334455555566666666666666655543
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=3.9e-13 Score=115.45 Aligned_cols=165 Identities=10% Similarity=0.036 Sum_probs=142.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHH
Q 047471 368 NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCL 446 (579)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 446 (579)
+...|..+...|...|++++|+..|++..+. .| +...+..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 5667888999999999999999999999885 44 5778888888999999999999999998874 34566777788
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHH
Q 047471 447 IDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGD 524 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 524 (579)
...+...++++.|.+.+.+. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88899999999999988886 3334 667888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 047471 525 VAGARKMLKDSG 536 (579)
Q Consensus 525 A~~~~~~~~~~~ 536 (579)
|++.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999987653
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=2.1e-12 Score=118.77 Aligned_cols=225 Identities=10% Similarity=-0.049 Sum_probs=164.2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhC----cCChHHHHHHHHHHHHccCCCCcchHh
Q 047471 267 LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAG----LASVQHGKQIHAHLIRMRLNQDVGVGN 342 (579)
Q Consensus 267 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 342 (579)
..++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ ++..+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 344555556666666666666666666542 233445555556666 667777777777666654 455666
Q ss_pred HHHHHHHh----cCChHHHHHHHHccCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047471 343 ALVNMYAK----CGLISCSYKLFNEMLH-RNVVSWNTIIAAHAN----HRLGGSALKLFEQMKATGIKPDSVTFIGLLTA 413 (579)
Q Consensus 343 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 413 (579)
.+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66777777 7777777777777643 355667777888888 889999999999988865 45666667777
Q ss_pred Hhc----cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh-
Q 047471 414 CNH----AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR----AGKLLEAEEYTKKFPLGQDPIVLGTLLSACRL- 484 (579)
Q Consensus 414 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~- 484 (579)
+.. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.+++.....++..+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 776 88999999999998874 256677888888888 89999999999886322346777788888888
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCC
Q 047471 485 ---RRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 485 ---~~~~~~A~~~~~~~~~~~p~~ 505 (579)
.+++++|...++++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999998864
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=3.4e-13 Score=128.98 Aligned_cols=227 Identities=10% Similarity=0.024 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCC-hHHHHHHHHccCC---CChhhHHHHHHHH
Q 047471 304 FTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGL-ISCSYKLFNEMLH---RNVVSWNTIIAAH 379 (579)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 379 (579)
..|..+...+...|++++|...++++.+.. +.+..+|..+..++...|+ +++|+..|++++. .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778888999999999999999876 6677888999999999997 9999999999953 4667899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh-cCChHH
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR-AGKLLE 458 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 458 (579)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++. .+-+...|+.+..++.. .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999953 236888999999999999999999999999984 34577889999999999 666588
Q ss_pred H-----HHHHHhC-CCCC-ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCC--------C
Q 047471 459 A-----EEYTKKF-PLGQ-DPIVLGTLLSACRLRR--DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDG--------M 521 (579)
Q Consensus 459 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~ 521 (579)
| ++.+++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++..+..++.+|.+.| +
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667765 4455 5678888888888877 689999999998 899999999999999999975 2
Q ss_pred -hHHHHHHHHHH-HhC
Q 047471 522 -WGDVAGARKML-KDS 535 (579)
Q Consensus 522 -~~~A~~~~~~~-~~~ 535 (579)
.++|+++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 58999999998 544
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.2e-13 Score=135.57 Aligned_cols=260 Identities=10% Similarity=-0.025 Sum_probs=173.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-H----HHHHHHHHHHhCcCChHHHHHHHHHHHHcc-----CCCCcchH
Q 047471 272 TFIAACSHCADYEKGLSVFKEMSNDHGVRPD-D----FTFASILAACAGLASVQHGKQIHAHLIRMR-----LNQDVGVG 341 (579)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 341 (579)
.+...+...|++++|+..|++..+. .|+ . ..+..+...+...|+++.|...+++..+.. .+....++
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445566666777777777666654 222 1 345556666666677777777666655431 12233556
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCC---------CChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLH---------RNVVSWNTIIAAHANHRL-----------------GGSALKLFEQM 395 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m 395 (579)
..+...|...|++++|...|++..+ ....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 6667777777777777777776632 122356667777778888 78888877776
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 396 KAT----GIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 396 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
.+. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1112 2346667777788888888888888887664211112 236777888888888988888888775
Q ss_pred C----CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 467 P----LGQ----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT------TSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 467 ~----~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
. ... ...++..+...+...|++++|...++++++..+.. ...+..++.+|...|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1 111 13566777788888899999999999888865443 347888899999999999999888887
Q ss_pred Hh
Q 047471 533 KD 534 (579)
Q Consensus 533 ~~ 534 (579)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.4e-13 Score=136.87 Aligned_cols=191 Identities=10% Similarity=-0.068 Sum_probs=152.5
Q ss_pred CcchHhHHHHHHHhcCCh-HHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047471 337 DVGVGNALVNMYAKCGLI-SCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLT 412 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 412 (579)
+...+..+...|...|++ ++|+..|++..+ .+...|..+..+|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344445555555555665 666666655521 23557777888888888899999999988884 577778888888
Q ss_pred HHhcc---------CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC----
Q 047471 413 ACNHA---------GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRA--------GKLLEAEEYTKKF-PLGQ---- 470 (579)
Q Consensus 413 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---- 470 (579)
.+... |++++|...++++.+. .+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 9999999999999874 345677888888998888 8999999999886 3345
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
++..+..+...+...|++++|...|+++++++|+++..+..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788899999999999999999999999999999999999999999999999999875433
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=2.5e-13 Score=132.90 Aligned_cols=271 Identities=13% Similarity=0.002 Sum_probs=158.2
Q ss_pred ChhHHhHHHHHHHhcCChhHHHHHHHhcCC--C-C----cchHHHHHHHHHhCCChHHHHHHHHHhhhC---CCCCCC-H
Q 047471 235 NPFVGNTIMALYSKFNLIGEAEKAFRLIEE--K-D----LISWNTFIAACSHCADYEKGLSVFKEMSND---HGVRPD-D 303 (579)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~ 303 (579)
....+......+...|++++|...|+...+ | + ...|..+...+...|++++|...+++.... .+..|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455666777777888888777776653 2 2 235666777777777787777777775432 011111 3
Q ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHccCC-C----CcchHhHHHHHHHhcCC--------------------hHHHH
Q 047471 304 FTFASILAACAGLASVQHGKQIHAHLIRMRLN-Q----DVGVGNALVNMYAKCGL--------------------ISCSY 358 (579)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~--------------------~~~A~ 358 (579)
..+..+...+...|++++|...+++..+.... + ...++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 35556666677777777777777766643210 1 12355666666677777 66666
Q ss_pred HHHHccCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHH
Q 047471 359 KLFNEMLH-----R----NVVSWNTIIAAHANHRLGGSALKLFEQMKATGI-KPD----SVTFIGLLTACNHAGLVKEGE 424 (579)
Q Consensus 359 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~ 424 (579)
..+++... . ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 66665521 1 122455666666677777777777766654210 111 225556666666777777777
Q ss_pred HHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHhcCCHHHHH
Q 047471 425 AYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKFP----LGQD----PIVLGTLLSACRLRRDVVIGE 492 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~ 492 (579)
..+++..+...-.++ ..++..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777666543111111 3455566666667777777766666541 1111 334555666666667777777
Q ss_pred HHHHHHHhcCCCC
Q 047471 493 RLAKQLFHLQPTT 505 (579)
Q Consensus 493 ~~~~~~~~~~p~~ 505 (579)
..+++++++.+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666665
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=3.9e-13 Score=123.81 Aligned_cols=219 Identities=11% Similarity=-0.032 Sum_probs=179.4
Q ss_pred hCcCChHHHHHHHHHHHHccC---CCCcchHhHHHHHHHhcCChHHHHHHHHccC---CCChhhHHHHHHHHHhcCChHH
Q 047471 314 AGLASVQHGKQIHAHLIRMRL---NQDVGVGNALVNMYAKCGLISCSYKLFNEML---HRNVVSWNTIIAAHANHRLGGS 387 (579)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 387 (579)
...|++++|...++.+.+... +.+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456899999999999998642 2356788889999999999999999999984 3457789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 047471 388 ALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF- 466 (579)
Q Consensus 388 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 466 (579)
|...|+++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999853 335788889999999999999999999999875 355444445555667789999999999765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 467 PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT----TTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 467 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
...|+......++..+...++.++|...++++++..|. ++..+..++.+|.+.|++++|...+++..+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 32333333344677778888999999999999987764 36889999999999999999999999998654
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=1.8e-13 Score=130.07 Aligned_cols=261 Identities=13% Similarity=0.039 Sum_probs=182.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhCCCCCCC-----HHHHHHHHHHHhCcCChHHHHHHHHHHHHc----cC-CCCcchH
Q 047471 272 TFIAACSHCADYEKGLSVFKEMSNDHGVRPD-----DFTFASILAACAGLASVQHGKQIHAHLIRM----RL-NQDVGVG 341 (579)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 341 (579)
.....+...|++++|+..|++..+. .|+ ...+..+...+...|+++.|...+++..+. +. +....++
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566667777777777776654 222 245556666667777777777777665533 11 1224456
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHHHH
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLH-----RN----VVSWNTIIAAHANHRL--------------------GGSALKLF 392 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 392 (579)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6677777788888888887777632 12 2366777778888888 88888888
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 047471 393 EQMKAT----GIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLEAEEYT 463 (579)
Q Consensus 393 ~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 463 (579)
++..+. +..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 1112 1346777777888899999999999888754211122 236778888899999999999988
Q ss_pred HhCC----CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CccHHHHHHHHHcCCChHHHHHHH
Q 047471 464 KKFP----LGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT------TSPYVLLSNLYASDGMWGDVAGAR 529 (579)
Q Consensus 464 ~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 529 (579)
++.. ..++ ..++..+...+...|++++|...++++++..|.. ...+..++.+|.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8751 1122 4566777888899999999999999999876543 347888999999999999999999
Q ss_pred HHHHhC
Q 047471 530 KMLKDS 535 (579)
Q Consensus 530 ~~~~~~ 535 (579)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=2e-10 Score=117.37 Aligned_cols=411 Identities=10% Similarity=0.011 Sum_probs=261.4
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHcccC-CC-HhhHHHHHHHHhccCC---hHHHHHHHHHHHHhc-CCCchhHHH
Q 047471 66 RNLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PN-EYIFASAISACAGIQS---LVKGQQIHAYSLKFG-YASISFVGN 139 (579)
Q Consensus 66 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~ 139 (579)
.|..+|..++..+...+.++.+..+|+++... |. ...|..-+..-.+.++ .+.+..+|+..+... .+|++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 46778888888888888888888888888777 54 3456666666667777 888888888887754 246777777
Q ss_pred HHHHHHHhcCCh----hH----HHHHhccC-----C-CC-CcchHHHHHHHHHh---------CCCcchHHHHHHHHHHC
Q 047471 140 SLISMYMKVGYS----SD----ALLVYGEA-----F-EP-NLVSFNALIAGFVE---------NQQPEKGFEVFKLMLRQ 195 (579)
Q Consensus 140 ~l~~~~~~~g~~----~~----A~~~~~~~-----~-~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~ 195 (579)
..+....+.++. ++ ..++|+.. . .+ +...|...+..... +++++.+..+|+....
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~- 222 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC- 222 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-
Confidence 777665555543 22 33555541 1 22 23456666654432 2345667777777764
Q ss_pred CCCCCc---ccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHh-------cCC-
Q 047471 196 GLLPDR---FSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRL-------IEE- 264 (579)
Q Consensus 196 g~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~- 264 (579)
+ |.. .+|.... .+.+.-+...+..++.+. ..+++.|...+.. +..
T Consensus 223 -i-P~~~~~~~w~~Y~-~fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 223 -Q-PMDCLESMWQRYT-QWEQDVNQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp -S-CCSSHHHHHHHHH-HHHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred -C-ccHHHHHHHHHHH-HHHHhcCcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 2 322 1221111 111110111111111110 0112222222222 110
Q ss_pred -------------C--C------cchHHHHHHHHHhCC-------ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCc
Q 047471 265 -------------K--D------LISWNTFIAACSHCA-------DYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGL 316 (579)
Q Consensus 265 -------------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 316 (579)
| + ...|...+.---..+ ..+.+..+|++.... .+-....|.....-+...
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHH
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhc
Confidence 0 0 123555554333322 124466778888765 334566666666667778
Q ss_pred CChHHHH-HHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC-------------CC------------hh
Q 047471 317 ASVQHGK-QIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH-------------RN------------VV 370 (579)
Q Consensus 317 ~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~ 370 (579)
|+.+.|. .+++..... .|.+...+-..+....+.|++++|..+|+.+.. |+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888886 999998864 366667777888888999999999999998853 31 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH-AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
.|...+....+.|+.+.|..+|.++.+.-..+....|...+..-.+ .++.+.|..+|+...+.+ +.+...+...++.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~f 513 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHH
Confidence 5777778788889999999999999885111223334333322223 356999999999999863 4466677788888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 450 LGRAGKLLEAEEYTKKF-PLGQ----DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++.+..|+++
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 88999999999999996 3334 236788888888899999999999999999999864
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=4.6e-13 Score=130.99 Aligned_cols=263 Identities=10% Similarity=-0.050 Sum_probs=141.7
Q ss_pred HHHHHHHhcccCcccchhHHHHHHHHhCCCCC---hhHHhHHHHHHHhcCChhHHHHHHHhcCC-----C----CcchHH
Q 047471 204 FAGGLEICSVSNDLRKGMILHCLTVKCKLESN---PFVGNTIMALYSKFNLIGEAEKAFRLIEE-----K----DLISWN 271 (579)
Q Consensus 204 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~ 271 (579)
+......+...|+++.|...++...+.+.... ..++..+...|...|++++|...|+.... . ...++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33444455666666666666666666532211 23455566666666666666666655432 1 123455
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHhCcCC--------------------hHHHHHHHH
Q 047471 272 TFIAACSHCADYEKGLSVFKEMSNDHGVRPD----DFTFASILAACAGLAS--------------------VQHGKQIHA 327 (579)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~ 327 (579)
.+...+...|++++|+..+++......-.++ ..++..+...+...|+ ++.|...+.
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 5566666666666666666665543111112 2245555556666666 666666666
Q ss_pred HHHHcc-----CCCCcchHhHHHHHHHhcCChHHHHHHHHccCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHH
Q 047471 328 HLIRMR-----LNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH-----RN----VVSWNTIIAAHANHRLGGSALKLFE 393 (579)
Q Consensus 328 ~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (579)
...+.. .+....++..+...|...|++++|...+++..+ ++ ..++..+...|...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 554321 011123455566666666666666666666521 11 1245556666666666666666666
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHH
Q 047471 394 QMKAT----GIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLEAEEYTK 464 (579)
Q Consensus 394 ~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (579)
+..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ..++..+..+|...|++++|.+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65542 11000 334555566666666666666666666543111111 3345556666666666666666665
Q ss_pred hC
Q 047471 465 KF 466 (579)
Q Consensus 465 ~~ 466 (579)
+.
T Consensus 332 ~a 333 (406)
T 3sf4_A 332 KH 333 (406)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=5.9e-12 Score=107.99 Aligned_cols=167 Identities=9% Similarity=-0.033 Sum_probs=138.1
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA 413 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 413 (579)
++.+|..+...|.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456777788888888888888888888742 355678888889999999999999999988853 3356677777788
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIG 491 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A 491 (579)
+...++++.|...+.+..+. .+.+...+..+..+|.+.|++++|++.|++. ...| ++.++..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998874 4556778888999999999999999999886 3344 677889999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 047471 492 ERLAKQLFHLQPTTT 506 (579)
Q Consensus 492 ~~~~~~~~~~~p~~~ 506 (579)
++.|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999763
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.41 E-value=2e-12 Score=126.82 Aligned_cols=264 Identities=11% Similarity=-0.023 Sum_probs=177.6
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCC--C-Cc----chHHHHHHHHHhCCChHHHHHHHHHhhhCC---CC-CCCHHHHHHH
Q 047471 241 TIMALYSKFNLIGEAEKAFRLIEE--K-DL----ISWNTFIAACSHCADYEKGLSVFKEMSNDH---GV-RPDDFTFASI 309 (579)
Q Consensus 241 ~l~~~~~~~~~~~~a~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~-~p~~~~~~~l 309 (579)
.+...+...|++++|...|+...+ | +. ..|..+...+...|++++|+..+++..... +. ......+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344555666666666666665543 2 11 245566666666777777777666654320 11 1123455566
Q ss_pred HHHHhCcCChHHHHHHHHHHHHcc-----CCCCcchHhHHHHHHHhcCC-----------------hHHHHHHHHccCC-
Q 047471 310 LAACAGLASVQHGKQIHAHLIRMR-----LNQDVGVGNALVNMYAKCGL-----------------ISCSYKLFNEMLH- 366 (579)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~- 366 (579)
...+...|++++|...++++.+.. .+....++..+...|...|+ +++|...+++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 666777777777777777665431 12233466677777777888 7777777776522
Q ss_pred ----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 367 ----R----NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIK-PD----SVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 367 ----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
. ....+..+...|...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 2236777888899999999999999988763110 12 236778888899999999999999988764
Q ss_pred hCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047471 434 YGISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKFP-L---GQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 434 ~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
..-..+ ...+..+..+|...|++++|.+.+++.. . .++ ..++..+...+...|++++|...+++++++
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 211111 4567788899999999999999988862 1 111 346777888899999999999999999987
Q ss_pred CCC
Q 047471 502 QPT 504 (579)
Q Consensus 502 ~p~ 504 (579)
.+.
T Consensus 373 ~~~ 375 (411)
T 4a1s_A 373 AXX 375 (411)
T ss_dssp CCH
T ss_pred Hhh
Confidence 764
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=3.1e-12 Score=132.26 Aligned_cols=162 Identities=12% Similarity=0.119 Sum_probs=137.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 047471 369 VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLI 447 (579)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 447 (579)
...|+.|...|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|+..|+++++. .+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456788888888899999999999988884 454 778888888899999999999999998874 234577888899
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHH
Q 047471 448 DLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDV 525 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 525 (579)
.+|...|++++|++.|++. ...| +...+..+...+...|++++|++.|+++++++|+++..+..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999988886 4455 5678888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047471 526 AGARKMLKD 534 (579)
Q Consensus 526 ~~~~~~~~~ 534 (579)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887754
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=6.5e-11 Score=110.75 Aligned_cols=220 Identities=9% Similarity=-0.008 Sum_probs=151.8
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh-------CcCCh-------HHHHHHHHHHHHccCCCCcchHhHHHHHHH
Q 047471 284 EKGLSVFKEMSNDHGVRPDDFTFASILAACA-------GLASV-------QHGKQIHAHLIRMRLNQDVGVGNALVNMYA 349 (579)
Q Consensus 284 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 349 (579)
++|..+|++.... .+-+...|..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5667777777654 2234445555554443 34664 777777777776322445557777777788
Q ss_pred hcCChHHHHHHHHccCC--CC-hh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHH
Q 047471 350 KCGLISCSYKLFNEMLH--RN-VV-SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTAC-NHAGLVKEGE 424 (579)
Q Consensus 350 ~~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~ 424 (579)
+.|++++|..+|+++.+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888887743 32 33 67778888888888888888888888753 23344444333332 2368888888
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047471 425 AYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP----LGQ--DPIVLGTLLSACRLRRDVVIGERLAKQL 498 (579)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 498 (579)
.+|++..+.. +.+...|..++..+.+.|++++|..+|++.. ..| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888752 3466778888888888888888888888862 244 3457777788888888888888888888
Q ss_pred HhcCCCCCcc
Q 047471 499 FHLQPTTTSP 508 (579)
Q Consensus 499 ~~~~p~~~~~ 508 (579)
++..|+++..
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 8888876544
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=3.1e-12 Score=124.08 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=134.3
Q ss_pred HHHhCcCChHHHHHHHHHHHHcc--CCC---CcchHhHHHHHHHhcCChHHHHHHHHccCC-----CC-----hhhHHHH
Q 047471 311 AACAGLASVQHGKQIHAHLIRMR--LNQ---DVGVGNALVNMYAKCGLISCSYKLFNEMLH-----RN-----VVSWNTI 375 (579)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 375 (579)
..+...|++++|...+++..+.- .+. ...++..+...|...|+++.|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34455566666666666655431 111 224555666666666666666666665521 11 2356666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHHh---CC-CCChhHHHHH
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGI-KPD----SVTFIGLLTACNHAGLVKEGEAYFNSMEKTY---GI-SPDIEHFTCL 446 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l 446 (579)
...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7777777777777777777664210 011 2356667777777778888777777776521 12 2234556677
Q ss_pred HHHHHhcCChHHHHHHHHhCC----C--CCC-hhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 447 IDLLGRAGKLLEAEEYTKKFP----L--GQD-PIVLGTLLSACRLRRD---VVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~----~--~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
..+|.+.|++++|.+.+++.. . .|. ...+..+...+...|+ .++|..++++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 777777788887777777641 1 111 1223455555666677 66666666655 22344455677788888
Q ss_pred HcCCChHHHHHHHHHHHh
Q 047471 517 ASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~ 534 (579)
...|++++|..++++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888887754
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=5.3e-13 Score=125.30 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=110.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCC------CCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHcc-------C
Q 047471 268 ISWNTFIAACSHCADYEKGLSVFKEMSNDH------GVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMR-------L 334 (579)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~ 334 (579)
.++..+...+...|++++|..+|+++.+.. ........+..+...+...|++++|...++++.+.. .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 356666677777777777777777765410 011123345555555566666666666666555431 1
Q ss_pred CCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 047471 335 NQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKAT------GIKP-DSVTF 407 (579)
Q Consensus 335 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~ 407 (579)
+....+ +..+...|...|++++|...++++.+. +..| ....+
T Consensus 108 ~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAAT-------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHH-------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHH-------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 112233 344444455555555555555544432 1112 12334
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHHh-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC
Q 047471 408 IGLLTACNHAGLVKEGEAYFNSMEKTY-----G-ISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP----------LGQD 471 (579)
Q Consensus 408 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~ 471 (579)
..+...+...|++++|..+++++.+.. + .+.....+..+..+|...|++++|.+.++++. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 444445555555555555555554320 0 11112334445555555555555555554431 0111
Q ss_pred h-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 472 P-------IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 472 ~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
. ..+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 11111122233344555555666666666666667777777777777777777777776654
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=3.5e-11 Score=112.61 Aligned_cols=213 Identities=7% Similarity=-0.004 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHccCCCCcchHhHHHHHHH-------hcCCh-------HHHHHHHHccCC---C-ChhhHHHHHHHHHh
Q 047471 320 QHGKQIHAHLIRMRLNQDVGVGNALVNMYA-------KCGLI-------SCSYKLFNEMLH---R-NVVSWNTIIAAHAN 381 (579)
Q Consensus 320 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 381 (579)
+.|..+|+++.... |.++.+|..++..+. +.|++ ++|..+|++.++ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888765 667788888887776 35886 899999999844 3 34578899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH-hcCChHH
Q 047471 382 HRLGGSALKLFEQMKATGIKPD-SV-TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG-RAGKLLE 458 (579)
Q Consensus 382 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 458 (579)
.|++++|..+|+++.+ +.|+ .. .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 4564 33 7888888899999999999999999873 3345555544443322 3799999
Q ss_pred HHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 459 AEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHL---QPT-TTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 459 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
|.++|++. ...| ++..|..++..+...|++++|..+|+++++. .|+ +...|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 2233 6788899999999999999999999999996 443 5668889999999999999999999999
Q ss_pred HhCCC
Q 047471 533 KDSGL 537 (579)
Q Consensus 533 ~~~~~ 537 (579)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87654
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=5.3e-12 Score=108.27 Aligned_cols=161 Identities=16% Similarity=-0.014 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG 451 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (579)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344444555555555555555554421 223445555555555566666666666665543 2334455555666666
Q ss_pred hcCChHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHH
Q 047471 452 RAGKLLEAEEYTKKF-P-LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGAR 529 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 529 (579)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666554 1 22345566666777777778888888888888877777777888888888888888888887
Q ss_pred HHHHhC
Q 047471 530 KMLKDS 535 (579)
Q Consensus 530 ~~~~~~ 535 (579)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777654
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=5.5e-11 Score=115.19 Aligned_cols=231 Identities=9% Similarity=0.020 Sum_probs=173.2
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCC------CCcchHh
Q 047471 273 FIAACSHCADYEKGLSVFKEMSNDHGVRPD----DFTFASILAACAGLASVQHGKQIHAHLIRMRLN------QDVGVGN 342 (579)
Q Consensus 273 l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 342 (579)
....+...|++++|+..|++..+...-.++ ..++..+...+...|+++.|...+.+..+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667788888888888887643111222 356777777888888888888888887754211 1234677
Q ss_pred HHHHHHHhcCChHHHHHHHHccCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 047471 343 ALVNMYAKCGLISCSYKLFNEMLH-----RN----VVSWNTIIAAHANHRLGGSALKLFEQMKAT----GIKP-DSVTFI 408 (579)
Q Consensus 343 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~ 408 (579)
.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999999888732 11 136788899999999999999999998872 3323 367788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHHh---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKTY---GISPDIEHFTCLIDLLGRAGK---LLEAEEYTKKFPLGQD-PIVLGTLLSA 481 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 481 (579)
.+...+...|++++|...+++..+.. +.+.....+..+...+...|+ .++|..++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 88999999999999999999887642 122223345678888889999 8999999999864443 3466778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC
Q 047471 482 CRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p 503 (579)
+...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998553
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=8.8e-12 Score=118.24 Aligned_cols=134 Identities=14% Similarity=0.020 Sum_probs=89.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hh
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKAT----GIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IE 441 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 441 (579)
.+..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4556666677777777777777776542 1111 1235666777778888888888888777653211112 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKFP----LGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
.+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 66777888888888888888877751 1111 346677788888999999999999999987764
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.5e-09 Score=110.84 Aligned_cols=428 Identities=7% Similarity=-0.036 Sum_probs=268.7
Q ss_pred HHHHHcccC-CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC---hhHHHHHhccCCC-
Q 047471 89 EFFSQMHLL-PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGY---SSDALLVYGEAFE- 163 (579)
Q Consensus 89 ~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~- 163 (579)
.+-+.+... -|..+|..++..+.+.+.++.+..+++.++.. ++.....|...+..-.+.|+ ++.+..+|++...
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 343444444 46678999999988888999999999998875 45566778888888888888 9999999988442
Q ss_pred ----CCcchHHHHHHHHHhCCCc----ch----HHHHHHHHHH-CCC-CCCc-ccHHHHHHHhcc---------cCcccc
Q 047471 164 ----PNLVSFNALIAGFVENQQP----EK----GFEVFKLMLR-QGL-LPDR-FSFAGGLEICSV---------SNDLRK 219 (579)
Q Consensus 164 ----~~~~~~~~li~~~~~~~~~----~~----a~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~~---------~~~~~~ 219 (579)
|++..|...+....+.++. ++ ..++|+.... .|. .|+. ..|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 6777788777766555543 22 3356665543 455 5543 334333333221 223445
Q ss_pred hhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCC-C
Q 047471 220 GMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDH-G 298 (579)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~ 298 (579)
+..+|+..+......-..+|......-...+ ...+.+++.+ ...+++.|...+.++.... +
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~ 274 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKG 274 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHh
Confidence 5666666553211111122221111110000 0011111111 0112333444444321100 1
Q ss_pred C----C-----------C-----C---HHHHHHHHHHHhCcC-------ChHHHHHHHHHHHHccCCCCcchHhHHHHHH
Q 047471 299 V----R-----------P-----D---DFTFASILAACAGLA-------SVQHGKQIHAHLIRMRLNQDVGVGNALVNMY 348 (579)
Q Consensus 299 ~----~-----------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 348 (579)
+ + | + ...|...+.---..+ ..+.+..+|+++.... +..+.+|-..+..+
T Consensus 275 l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 275 LKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQ 353 (679)
T ss_dssp CCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred HhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 1 0 1 1 122333332222221 1334566788887753 66788888888888
Q ss_pred HhcCChHHHH-HHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC------------
Q 047471 349 AKCGLISCSY-KLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGI---------KPD------------ 403 (579)
Q Consensus 349 ~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------ 403 (579)
...|+.++|. .+|+.... .+...|-..+....+.|++++|..+|+++.+... .|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 8999999996 99998843 3555677788888899999999999999886410 132
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-C-CCCChhhHHHHHH
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG-KLLEAEEYTKKF-P-LGQDPIVLGTLLS 480 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~-~~p~~~~~~~l~~ 480 (579)
...|...+....+.|+.+.|..+|.++.+. .-......|...+..-.+.| +.+.|.++|+.. . .+.++..|..++.
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 235777777778889999999999999873 11223344444444444544 589999999986 2 3346677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC---CCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPT---TTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
.....|+.+.|..+|+++++..|+ ....|..++..-.+.|+.+.+.++.+++.+.-+
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 888899999999999999998874 446788888888889999999999999987643
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.35 E-value=8.5e-10 Score=106.37 Aligned_cols=259 Identities=8% Similarity=-0.035 Sum_probs=152.1
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCCHH----HHHHHHHHHhCcCChHHHHHHHHHHHHccCC-CC----cchHhHHH
Q 047471 275 AACSHCADYEKGLSVFKEMSNDHGVRPDDF----TFASILAACAGLASVQHGKQIHAHLIRMRLN-QD----VGVGNALV 345 (579)
Q Consensus 275 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li 345 (579)
..+...|++++|...+++.... ....+.. .+..+...+...|+++.|...+++....... .+ ..++..+.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEE-LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445566666666666665554 2111111 3344445556667777777766665543211 11 12234556
Q ss_pred HHHHhcCChHHHHHHHHccCC----------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 047471 346 NMYAKCGLISCSYKLFNEMLH----------R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIK--P--DSVTFIGL 410 (579)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~l 410 (579)
..+...|++++|...+++... + ....+..+...+...|++++|...+++..+.... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 666777777777777766521 1 1224455666777778888888888777653211 1 13456666
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----hhhHHHHH
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFT-----CLIDLLGRAGKLLEAEEYTKKFP-LGQD-----PIVLGTLL 479 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~ 479 (579)
...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 6677778888888888877765421111111111 22344667788888888877762 1221 12345566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC------ccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 480 SACRLRRDVVIGERLAKQLFHLQPTTT------SPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..+...|++++|...++++.+..+... ..+..++.++...|+.++|...+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 667777888888888887776543211 3556667778888888888887777654
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=6.9e-11 Score=105.26 Aligned_cols=205 Identities=9% Similarity=0.033 Sum_probs=148.2
Q ss_pred CCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--C-ChhhHHHHHH
Q 047471 301 PDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--R-NVVSWNTIIA 377 (579)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 377 (579)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777778888888999999999999988877446777777788888889999999998888743 3 4456778888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC---hhHHHHH
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKP-DS-------VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD---IEHFTCL 446 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 446 (579)
+|...|++++|+..+++..+. .| +. ..|..+...+...|++++|...++++.+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888889999999999888884 34 34 4466777778888889999998888875 2444 5667777
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 447 IDLLGRAGKLLEAEEYTKKFP--LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
..+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7777665543 222221 112233332222 334566899999999999999999887777766543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=2.9e-11 Score=107.70 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=101.0
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLH----RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLL 411 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll 411 (579)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345555555666666666666666665521 44445555566666666666666666666653 333 44555555
Q ss_pred HHHhccCCHHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hhhHHHHHH
Q 047471 412 TACNHAGLVKEGEAYFNSMEKTYGISPDI-------EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD---PIVLGTLLS 480 (579)
Q Consensus 412 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~ 480 (579)
.++...|++++|...+++..+. .+.+. ..|..+...+...|++++|.+.+++. ...|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 5666666666666666666553 12222 33455555555566666666655554 33343 233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.+.. .+...++++..+.+.++..|... .....|.+++|+..+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 4432 22334455555554443333222 233344559999999988765
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=1.5e-10 Score=99.10 Aligned_cols=168 Identities=13% Similarity=-0.073 Sum_probs=142.5
Q ss_pred chHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047471 339 GVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACN 415 (579)
Q Consensus 339 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 415 (579)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3456677888899999999999999854 356678888999999999999999999998852 346788888888999
Q ss_pred ccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHH
Q 047471 416 HAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGER 493 (579)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~ 493 (579)
..|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ .. +.++..+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999884 4567788889999999999999999999886 22 3466788889999999999999999
Q ss_pred HHHHHHhcCCCCCccH
Q 047471 494 LAKQLFHLQPTTTSPY 509 (579)
Q Consensus 494 ~~~~~~~~~p~~~~~~ 509 (579)
.++++++..|+++...
T Consensus 166 ~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 166 HFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHCCCGGG
T ss_pred HHHHHHHcCCCchhhH
Confidence 9999999998876543
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=7.7e-12 Score=117.31 Aligned_cols=246 Identities=9% Similarity=0.012 Sum_probs=157.1
Q ss_pred ChhHHhHHHHHHHhcCChhHHHHHHHhcCC--------C---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCC------
Q 047471 235 NPFVGNTIMALYSKFNLIGEAEKAFRLIEE--------K---DLISWNTFIAACSHCADYEKGLSVFKEMSNDH------ 297 (579)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------ 297 (579)
...++..+...+...|++++|...|+.+.+ . ...++..+...+...|++++|...+++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346778889999999999999999988765 2 23467888899999999999999999987541
Q ss_pred CCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHH
Q 047471 298 GVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIA 377 (579)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 377 (579)
........+..+...+...|++++|...++++.+..... .. ++ .......+..+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~-~~-----------~~~~~~~~~~la~ 161 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV------------LG-KD-----------HPDVAKQLNNLAL 161 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------HC-TT-----------CHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh------------cC-CC-----------ChHHHHHHHHHHH
Confidence 122345677888888999999999999998877541000 00 00 0001234555666
Q ss_pred HHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHh------CCCCCh----
Q 047471 378 AHANHRLGGSALKLFEQMKAT------GIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTY------GISPDI---- 440 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~---- 440 (579)
.+...|++++|..+++++.+. +..|+ ..++..+...+...|++++|...++++.+.. ...+..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 666777777777777766553 11232 3456667777778888888888887776531 011111
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 441 ---EHFTCLIDLLGRAGKLLEAEEYTKKFP-LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 441 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
..+..+...+...+.+.+|...++... ..| ...++..+...+...|++++|.+++++++++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112222333445566666666666653 233 4567888889999999999999999999998775
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=1.1e-10 Score=115.98 Aligned_cols=208 Identities=13% Similarity=0.012 Sum_probs=159.5
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCCh-HHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHH
Q 047471 283 YEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASV-QHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLF 361 (579)
Q Consensus 283 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 361 (579)
.++++..+++.... .+.+...+..+...+...|++ ++|...++++.+.. +.+...+..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56666677766543 234667777777888888888 88888888888765 455778888888888888888888888
Q ss_pred Hcc--CCCChhhHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CCHHH
Q 047471 362 NEM--LHRNVVSWNTIIAAHANH---------RLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHA--------GLVKE 422 (579)
Q Consensus 362 ~~~--~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------~~~~~ 422 (579)
++. ..|+...+..+...+... |++++|+..+++..+.. +.+...+..+..++... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 887 346667777888888888 88999999999888852 23577788888888877 88999
Q ss_pred HHHHHHHhHHHhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047471 423 GEAYFNSMEKTYGIS---PDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAK 496 (579)
Q Consensus 423 a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~ 496 (579)
|...|+++.+. .+ .+...+..+..+|...|++++|.+.|++. ...| +...+..+...+...|++++|.+.+.
T Consensus 240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988874 22 36778888889999999999999988886 3344 55667777788888888888876543
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=8e-11 Score=113.79 Aligned_cols=222 Identities=9% Similarity=-0.042 Sum_probs=138.9
Q ss_pred HHhCcCChHHHHHHHHHHHHccC-CC----CcchHhHHHHHHHhcCChHHHHHHHHccCC-----CC-----hhhHHHHH
Q 047471 312 ACAGLASVQHGKQIHAHLIRMRL-NQ----DVGVGNALVNMYAKCGLISCSYKLFNEMLH-----RN-----VVSWNTII 376 (579)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~ 376 (579)
.+...|+++.|...++++.+... .+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34566677777777666654311 11 234556666677777777777776666521 11 23566777
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh---CCCCChhHHHHHHH
Q 047471 377 AAHANHRLGGSALKLFEQMKAT----GIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY---GISPDIEHFTCLID 448 (579)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 448 (579)
.+|...|++++|...+++..+. +..+ ...++..+..++...|++++|...+++..+.. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7788888888888888776652 1111 13456667777888888888888888776521 22223556677778
Q ss_pred HHHhcCChHHHHHHHHhC----CC--CCC-hhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 449 LLGRAGKLLEAEEYTKKF----PL--GQD-PIVLGTLLSACRLRRD---VVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
++.+.|++++|.+.+++. .. .|. ...+..+...+...++ +.+|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888887774 11 121 1233444444555666 66666666651 2223444567788888888
Q ss_pred CCChHHHHHHHHHHHh
Q 047471 519 DGMWGDVAGARKMLKD 534 (579)
Q Consensus 519 ~g~~~~A~~~~~~~~~ 534 (579)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888887753
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.27 E-value=1.1e-09 Score=105.67 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=172.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHhCcCChHHHHHHHHHHHHccCC------CCcchH
Q 047471 272 TFIAACSHCADYEKGLSVFKEMSNDHGVRPD----DFTFASILAACAGLASVQHGKQIHAHLIRMRLN------QDVGVG 341 (579)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~ 341 (579)
.....+...|++++|+..|++..+.....++ ..++..+...+...|+++.|...+.+..+.... ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3445567889999999999887654112233 346677778888899999999998887754211 124566
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHH
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLH-----RN----VVSWNTIIAAHANHRLGGSALKLFEQMKAT----GIKPDSVTFI 408 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~ 408 (579)
+.+..+|...|++++|...|++..+ ++ ..++..+..+|...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 7788899999999999999888732 12 246778889999999999999999998871 2222367788
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHHhCC---CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCh-hhHHHHHHH
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKTYGI---SPDIEHFTCLIDLLGRAGK---LLEAEEYTKKFPLGQDP-IVLGTLLSA 481 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~ 481 (579)
.+...+.+.|++++|...+++..+...- +.....+..+...+...|+ ..+|..++++....|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888999999999999999999875222 2223445666677778888 89999999987544433 456678888
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 047471 482 CRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~ 502 (579)
+...|++++|...++++++..
T Consensus 346 y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988743
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=2.1e-10 Score=106.31 Aligned_cols=200 Identities=10% Similarity=0.003 Sum_probs=137.0
Q ss_pred ChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC-------C--ChhhHHHHHHHHHhcCChHHH
Q 047471 318 SVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH-------R--NVVSWNTIIAAHANHRLGGSA 388 (579)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a 388 (579)
++++|...+... ...|...|++++|...|++... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 3346667777777777776622 1 134677888888888999999
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHH
Q 047471 389 LKLFEQMKAT----GIKP-DSVTFIGLLTACNHA-GLVKEGEAYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 389 ~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 458 (579)
+..+++..+. |-.+ -..++..+...|... |++++|+..|++..+.+.-..+ ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887762 1111 134677888888886 9999999999998764211111 3567888999999999999
Q ss_pred HHHHHHhC-CCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-----HHHHHHHHH--cCCCh
Q 047471 459 AEEYTKKF-PLGQDP--------IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP-----YVLLSNLYA--SDGMW 522 (579)
Q Consensus 459 A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 522 (579)
|.+.|++. ...|+. ..+..+..++...|++++|...++++++++|..+.. +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999886 223322 145667777888999999999999999999986653 344566664 45678
Q ss_pred HHHHHHHHHH
Q 047471 523 GDVAGARKML 532 (579)
Q Consensus 523 ~~A~~~~~~~ 532 (579)
++|+..++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888887654
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=2.5e-09 Score=94.71 Aligned_cols=180 Identities=10% Similarity=-0.043 Sum_probs=106.6
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHH
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEMLH--RN----VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDS----VTFIG 409 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ 409 (579)
.+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 334455566666777777777766632 22 134555666666667777777777766663 2221 12333
Q ss_pred HHHHHhc------------------cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 047471 410 LLTACNH------------------AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQD 471 (579)
Q Consensus 410 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~ 471 (579)
+..++.. .|++++|...|+++++. .+-+............-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence 3333332 34455555555555542 111111111111000000000
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 472 PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT---SPYVLLSNLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...++.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112455668889999999999999999999986 56889999999999999999999999877653
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=9.5e-11 Score=108.01 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh-----C-CC
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKAT------GIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY-----G-IS 437 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~ 437 (579)
++..+...|...|++++|...++++.+. .-.| ...++..+...+...|++++|...++++.+.. + .+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555555566666666666666655542 1112 24455555566666666666666666665420 0 11
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCCh-hhHHHHHHHHHhcC------CHHHHHHHHHHHHh
Q 047471 438 PDIEHFTCLIDLLGRAGKLLEAEEYTKKFP----------LGQDP-IVLGTLLSACRLRR------DVVIGERLAKQLFH 500 (579)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~~-~~~~~l~~~~~~~~------~~~~A~~~~~~~~~ 500 (579)
....++..+..+|...|++++|.+.++++. ..+.. ..+..+.......+ .+..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 123455556666666666666666665531 12222 22222222222222 12233333333323
Q ss_pred cCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 501 LQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 501 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..|..+..+..++.+|...|++++|..++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344456677788888888888888888877654
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=2.4e-10 Score=118.16 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=122.6
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLT 412 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~ 412 (579)
+...++.+...|.+.|++++|++.|++.++ .+...|..+..+|.+.|++++|+..|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345666777777777777777777777632 34557777888888888888888888888874 454 677888888
Q ss_pred HHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHH
Q 047471 413 ACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 490 (579)
++...|++++|++.|++.++. .+-+...+..+..+|...|++++|++.|++. ...| +...+..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888764 2345677888888888888888888888875 4445 45677888888888888888
Q ss_pred HHHHHHHHHhcCC
Q 047471 491 GERLAKQLFHLQP 503 (579)
Q Consensus 491 A~~~~~~~~~~~p 503 (579)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877543
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.15 E-value=3.5e-11 Score=98.94 Aligned_cols=143 Identities=10% Similarity=-0.011 Sum_probs=108.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRA 453 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 453 (579)
|...+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.|++.++. .+-+...|..+..+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 34445566778888888877665 2343 445566777788888888888888888874 345677888888888888
Q ss_pred CChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 454 GKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGER-LAKQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 454 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
|++++|...|++. ...| ++..+..+...+...|++++|.+ +++++++++|+++.+|.....++.+.|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888876 4455 56788888888889999876655 5699999999999999999999988885
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.12 E-value=2e-08 Score=96.66 Aligned_cols=61 Identities=5% Similarity=-0.064 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCC---CCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Q 047471 271 NTFIAACSHCADYEKGLSVFKEMSNDH---GVRPDDFTFASILAACAGLASVQHGKQIHAHLIR 331 (579)
Q Consensus 271 ~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (579)
..+...+...|++++|...+++..... +......++..+...+...|++++|...+++...
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444555555555555555543320 0000123344444444555555555555555443
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=1.4e-09 Score=87.40 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=74.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcC
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-P-LGQDPIVLGTLLSACRLRR 486 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~ 486 (579)
.+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444455555555555555442 1223444444555555555555555555543 1 1223445556666666777
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
++++|...++++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777777776554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=2.7e-09 Score=97.03 Aligned_cols=183 Identities=10% Similarity=-0.046 Sum_probs=110.9
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLH--RN----VVSWNTIIAAHANHRLGGSALKLFEQMKATGI-KPD-SVTFI 408 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~ 408 (579)
++..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555566666777777777777777643 22 34556666667777777777777777766421 112 33455
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHH
Q 047471 409 GLLTACNH--------AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLS 480 (579)
Q Consensus 409 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 480 (579)
.+..++.. .|++++|...|+++.+.+ +.+......+.......++. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555655 677777777777776642 11222221111110000000 011345667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHcC----------CChHHHHHHHHHHHhCC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTTT---SPYVLLSNLYASD----------GMWGDVAGARKMLKDSG 536 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 536 (579)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 77888888888888888888888754 4677888888866 78888888888887643
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=7.1e-09 Score=93.85 Aligned_cols=241 Identities=11% Similarity=0.008 Sum_probs=153.7
Q ss_pred HHHhcCChhHHHHHHHhcCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHH
Q 047471 245 LYSKFNLIGEAEKAFRLIEEKDLI-SWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGK 323 (579)
Q Consensus 245 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (579)
-..-.|.+..++.-...+...+.. .-..+.+++...|++... . .-.|....+..+...+ ..+ +.
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~-~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------D-PTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------C-SSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------C-CCCHHHHHHHHHHHHh-ccc----HH
Confidence 344457777776655554432222 222344677777776531 1 2234443443333333 222 55
Q ss_pred HHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 047471 324 QIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHR-----NVVSWNTIIAAHANHRLGGSALKLFEQMKAT 398 (579)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 398 (579)
..+++..+.+ +++......+..++...|++++|++++.+.+.. +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 6666665554 444555557778888888888888888887432 345677778888999999999999999987
Q ss_pred CCCC-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 047471 399 GIKP-----DSVTFIGLLTAC--NH--AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP-L 468 (579)
Q Consensus 399 ~~~p-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 468 (579)
..| +..+...+..++ .. .+++++|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+. .
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466 355555666552 22 34888999999998754 3553333444457888899999999887652 1
Q ss_pred ----------CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 469 ----------GQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 469 ----------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
.| ++.++..++......|+ +|.++++++.+..|++|.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 13 55666566666666676 8889999999999988643
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=8.5e-10 Score=100.43 Aligned_cols=201 Identities=7% Similarity=-0.065 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCC---cchHhHHHHHHHhcCChHHHHHHHHccCC--CC----hhh
Q 047471 301 PDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQD---VGVGNALVNMYAKCGLISCSYKLFNEMLH--RN----VVS 371 (579)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 371 (579)
.+...+......+.+.|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|...|+++.+ |+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888999999999999999998865 333 56778889999999999999999999843 32 345
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhH
Q 047471 372 WNTIIAAHAN--------HRLGGSALKLFEQMKATGIKPDS-VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEH 442 (579)
Q Consensus 372 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 442 (579)
+..+..++.. .|++++|+..|+++.+. .|+. ..... ...+..+... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHH
Confidence 6777888888 99999999999999985 3442 22211 1111111111 0112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 047471 443 FTCLIDLLGRAGKLLEAEEYTKKF-PLGQD----PIVLGTLLSACRLR----------RDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
+..+...|.+.|++++|...|+++ ...|+ +..+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 456677788888888888888775 22333 34566666666655 8899999999999999999864
Q ss_pred c---HHHHHHHHHcCCChH
Q 047471 508 P---YVLLSNLYASDGMWG 523 (579)
Q Consensus 508 ~---~~~l~~~~~~~g~~~ 523 (579)
. ...+..++...|+++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 334444544444433
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=7.6e-09 Score=93.66 Aligned_cols=240 Identities=11% Similarity=0.001 Sum_probs=167.6
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCC
Q 047471 274 IAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGL 353 (579)
Q Consensus 274 ~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 353 (579)
++-..-.|++..++.-..++. ...++ .....+.+++...|++... ..-+|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc-
Confidence 344455788888887544432 22222 3334455667666665531 1112332233433333 3322
Q ss_pred hHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047471 354 ISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNS 429 (579)
Q Consensus 354 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 429 (579)
|+..|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6777887753 455666778888999999999999999987765422 467788888999999999999999999
Q ss_pred hHHHhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047471 430 MEKTYGISP-----DIEHFTCLIDL--LGRAG--KLLEAEEYTKKFP-LGQDPIVLGTLLSACRLRRDVVIGERLAKQLF 499 (579)
Q Consensus 430 ~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 499 (579)
|.+. .| +..+...|+.+ ....| ++.+|..+|+++. ..|+..+...++.++...|++++|.+.++.+.
T Consensus 162 ~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9764 56 35556666655 33334 9999999999983 34553344445558889999999999999888
Q ss_pred hc----------CCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 500 HL----------QPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 500 ~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
+. +|+++.+...++.+....|+ +|.++++++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 76 58899999888888888887 8899999998764
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.4e-09 Score=100.79 Aligned_cols=196 Identities=8% Similarity=-0.080 Sum_probs=126.7
Q ss_pred HhCcCChHHHHHHHHHHHHc----cCCC-CcchHhHHHHHHHhcCChHHHHHHHHccCC-----CC----hhhHHHHHHH
Q 047471 313 CAGLASVQHGKQIHAHLIRM----RLNQ-DVGVGNALVNMYAKCGLISCSYKLFNEMLH-----RN----VVSWNTIIAA 378 (579)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 378 (579)
+...|++++|...+.+..+. +-++ ...+++.+..+|.+.|++++|+..|++..+ .+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666655543 1111 134566667777777777777777766632 11 2467778888
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCCh-----hHHHHHH
Q 047471 379 HANH-RLGGSALKLFEQMKATGIKP-D----SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDI-----EHFTCLI 447 (579)
Q Consensus 379 ~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~ 447 (579)
|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|+++.+...-.+.. ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8886 99999999998887631110 1 3467778888899999999999999988742111221 1467778
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCChh------hHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 448 DLLGRAGKLLEAEEYTKKF-PLGQDPI------VLGTLLSACR--LRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
.++...|++++|...+++. ...|+.. .+..++.++. ..+++++|+..|+++.+++|.+...
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 8888999999999999886 4445321 2344455554 3467888888888888887765333
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=3.4e-09 Score=97.45 Aligned_cols=198 Identities=11% Similarity=0.047 Sum_probs=114.5
Q ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHc------c-CCCCcchHhHHHHHHHhcCChHHHHHHHHccCC-----------
Q 047471 305 TFASILAACAGLASVQHGKQIHAHLIRM------R-LNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH----------- 366 (579)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------- 366 (579)
++..+...+...|++++|...++++.+. + .+....++..+..+|...|++++|...|+++..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444432 1 111233445555555555555555555555421
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh-----
Q 047471 367 RNVVSWNTIIAAHANHRLGGSALKLFEQMKAT------GIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY----- 434 (579)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 434 (579)
....++..+...|...|++++|...++++.+. +-.| ...++..+...+...|++++|...++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12345677778888888888888888888763 1133 25567788888999999999999998887631
Q ss_pred -CCCC-ChhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 435 -GISP-DIEHFTCLIDLLGRAGK------LLEAEEYTKKFP-LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 435 -~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
...+ ....+..+...+...+. +.++...++... ..| ...++..+...+...|++++|..+++++++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1122 22334444444433333 334444444443 223 34567888889999999999999999998753
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=7.3e-09 Score=83.05 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667778888888899999888888753 335677777888888888999999999888874 344567778888888
Q ss_pred HhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 451 GRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 451 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++.+|++
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8999999999888876 22 3356778888888899999999999999999888763
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=1.5e-09 Score=112.84 Aligned_cols=165 Identities=13% Similarity=0.002 Sum_probs=84.7
Q ss_pred hCcCChHHHHHHHHHHH--------HccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhc
Q 047471 314 AGLASVQHGKQIHAHLI--------RMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANH 382 (579)
Q Consensus 314 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 382 (579)
...|++++|.+.++++. +.. +.+...+..+..+|...|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666555 221 33444555555555555666666655555532 2334555555555555
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047471 383 RLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEE 461 (579)
Q Consensus 383 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 461 (579)
|++++|...|++..+. .| +...+..+..++...|++++ .+.|+++.+. .+.+...+..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666555553 23 34445555555555555555 5555555542 22344455555555555555555555
Q ss_pred HHHhC-CCCCC-hhhHHHHHHHHHh
Q 047471 462 YTKKF-PLGQD-PIVLGTLLSACRL 484 (579)
Q Consensus 462 ~~~~~-~~~p~-~~~~~~l~~~~~~ 484 (579)
.|+++ ...|+ ...+..+..++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHhhcccCcccHHHHHHHHHHHHc
Confidence 55554 23343 2334444444433
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=1.9e-08 Score=87.94 Aligned_cols=162 Identities=10% Similarity=-0.101 Sum_probs=128.9
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHHHhCCCCChhH
Q 047471 367 RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG----LVKEGEAYFNSMEKTYGISPDIEH 442 (579)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 442 (579)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456667777778888888999999999888865 55666667667776 6 899999999988764 35667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCC-CCCC---hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 443 FTCLIDLLGR----AGKLLEAEEYTKKFP-LGQD---PIVLGTLLSACRL----RRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 443 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
+..|...|.. .+++++|.++|++.. ..|+ +..+..|...|.. .+++++|..+++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888876 789999999998863 3342 6788888888887 78999999999999998 66778899
Q ss_pred HHHHHHHcC-C-----ChHHHHHHHHHHHhCCC
Q 047471 511 LLSNLYASD-G-----MWGDVAGARKMLKDSGL 537 (579)
Q Consensus 511 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 537 (579)
.|+.+|... | +.++|..++++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999998877653
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.00 E-value=6.4e-09 Score=95.83 Aligned_cols=174 Identities=10% Similarity=-0.056 Sum_probs=139.0
Q ss_pred HHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 355 SCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 355 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
+.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444555555455566777888889999999999999999885 44 5778888889999999999999999998764
Q ss_pred hCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Ccc
Q 047471 434 YGISPDIEHFTC-LIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT--TSP 508 (579)
Q Consensus 434 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~ 508 (579)
.|+...... ....+...++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ +..
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 233466778888888888776 3344 67888899999999999999999999999999988 788
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 509 YVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 509 ~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998888754
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=3.7e-10 Score=92.74 Aligned_cols=124 Identities=13% Similarity=0.023 Sum_probs=101.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 047471 410 LLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRD 487 (579)
Q Consensus 410 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 487 (579)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|.+.|++. ...| ++..+..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344567788999999999888642 2223455667899999999999999999986 4455 67889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHH-HHHHHhC
Q 047471 488 VVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGA-RKMLKDS 535 (579)
Q Consensus 488 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 535 (579)
+++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887665 5776653
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=7.2e-09 Score=105.94 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=125.0
Q ss_pred cCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047471 351 CGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYF 427 (579)
Q Consensus 351 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (579)
.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999999854 346678889999999999999999999999853 235788889999999999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 047471 428 NSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLR---RDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 502 (579)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999985 3456788999999999999999999999986 3344 567888889999999 99999999999999999
Q ss_pred CCCCccHHHHH
Q 047471 503 PTTTSPYVLLS 513 (579)
Q Consensus 503 p~~~~~~~~l~ 513 (579)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988887776
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=8.4e-07 Score=88.00 Aligned_cols=362 Identities=11% Similarity=-0.026 Sum_probs=207.1
Q ss_pred hHHHHHHHHHcccC-CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC-hhHHHHHhccC
Q 047471 84 HLLALEFFSQMHLL-PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGY-SSDALLVYGEA 161 (579)
Q Consensus 84 ~~~a~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 161 (579)
++.|..+|+.+... |. ++.+.+.++|+..+.. .|+...|...+....+.++ .+....+|+..
T Consensus 11 i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 66666666666544 43 7788888888877763 3577777777766665553 23344444442
Q ss_pred C------CCCcchHHHHHHHHH----hCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhc---ccCcccchhHHHHHHH
Q 047471 162 F------EPNLVSFNALIAGFV----ENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICS---VSNDLRKGMILHCLTV 228 (579)
Q Consensus 162 ~------~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~ 228 (579)
. ..+...|...+..+. .+++.+.+..+|++.... ++. .+..+-..|. .......+..+...
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~-- 148 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGKKIVGD-- 148 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHHHHHHH--
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHHHHHHH--
Confidence 1 234455665555433 234566677777777652 221 1111111111 11111111111111
Q ss_pred HhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC----CCcchHHHHHHHHHhCC--C-----hHHHHHHHHHhhhCC
Q 047471 229 KCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE----KDLISWNTFIAACSHCA--D-----YEKGLSVFKEMSNDH 297 (579)
Q Consensus 229 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~~ 297 (579)
. .+.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|+++...
T Consensus 149 -----------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~- 208 (493)
T 2uy1_A 149 -----------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS- 208 (493)
T ss_dssp -----------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-
T ss_pred -----------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-
Confidence 0 0112223333322221 13335555554432221 1 34567788888765
Q ss_pred CCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHH-HHHHccC-----------
Q 047471 298 GVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSY-KLFNEML----------- 365 (579)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~----------- 365 (579)
.+.+...|...+.-+.+.|+.+.|..+++..... |.+...+. .|....+.++.. .+.+...
T Consensus 209 -~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 209 -FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp -TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------C
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence 3445666777777777889999999999999887 44443332 233222222211 1222110
Q ss_pred -CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHHhCCCCChhHH
Q 047471 366 -HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACN-HAGLVKEGEAYFNSMEKTYGISPDIEHF 443 (579)
Q Consensus 366 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 443 (579)
......|...+..+.+.++.+.|..+|+++ .. ..++...|......-. ..++.+.|..+|+...+.+ +.++..+
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 011235666666676778899999999999 32 2234444443222212 2347999999999999864 3344556
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 444 TCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677888888999999999999984 3567888888888889999999999998885
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.93 E-value=7.1e-09 Score=87.78 Aligned_cols=156 Identities=6% Similarity=-0.049 Sum_probs=95.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH-HH
Q 047471 374 TIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL-LG 451 (579)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 451 (579)
.+...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...++++.+. .|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 3444555556666666666555442 22 3455555555566666666666666665543 1232222221111 11
Q ss_pred hcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CccHHHHHHHHHcCCChHHHHH
Q 047471 452 RAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT--TSPYVLLSNLYASDGMWGDVAG 527 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 527 (579)
..++..+|.+.+++. ...| ++..+..+...+...|++++|...++++++.+|+. +..+..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222223455555554 2344 56777788888888899999999999999988865 4588888999999999999888
Q ss_pred HHHHHHh
Q 047471 528 ARKMLKD 534 (579)
Q Consensus 528 ~~~~~~~ 534 (579)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=2.1e-08 Score=87.51 Aligned_cols=127 Identities=9% Similarity=0.001 Sum_probs=99.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 047471 374 TIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR 452 (579)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 452 (579)
.+..+|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+. .+.+...+..+..+|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3888899999999999999999985 44 5788888999999999999999999999984 34567788888888876
Q ss_pred cCC--hHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 453 AGK--LLEAEEYTKKFPLGQDP--IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 453 ~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
.|+ .+.+...++... .|++ ..+.....++...|++++|+..|+++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445566676664 3443 334445566777899999999999999999973
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.92 E-value=5.9e-09 Score=85.04 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
+...+..+...+.+.|++++|.+.|+++ ...| ++..|..+..++...|++++|+..|+++++++|+++..|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456677778888888888888888886 3344 6778888888899999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhCC
Q 047471 517 ASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~ 536 (579)
...|++++|...+++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999987754
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=9.2e-09 Score=81.33 Aligned_cols=109 Identities=9% Similarity=-0.059 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSAC 482 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 482 (579)
..+......+.+.|++++|+..|++.++. .+.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 44555666677777777777777777653 3445666666777777777777777776664 2233 456677777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
...|++++|++.|+++++++|+++.++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777766666554
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=4.9e-08 Score=90.97 Aligned_cols=219 Identities=9% Similarity=0.025 Sum_probs=155.4
Q ss_pred hCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhC-cCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHH
Q 047471 279 HCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAG-LASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCS 357 (579)
Q Consensus 279 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 357 (579)
..|++++|.+++++..+. .+.. +.+ .++++.|...|..+ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~--~~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY--LKTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH--HCCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHH--cccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 356788888888877653 1111 122 47788877777654 4567788999999
Q ss_pred HHHHHccCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCCHHHH
Q 047471 358 YKLFNEMLH-----RN----VVSWNTIIAAHANHRLGGSALKLFEQMKATGI---KPD--SVTFIGLLTACNHAGLVKEG 423 (579)
Q Consensus 358 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~~~~~~a 423 (579)
...|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 988887732 11 34678888899999999999999998776311 121 3567778888888 999999
Q ss_pred HHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----hhhHHHHHHHHHhcCCHHHH
Q 047471 424 EAYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKFP-L---GQD----PIVLGTLLSACRLRRDVVIG 491 (579)
Q Consensus 424 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A 491 (579)
+..|++..+.+.-..+ ..++..+..+|.+.|++++|++.|++.. . .++ ...+..++..+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998764211111 4577888999999999999999998862 1 122 12455666667778999999
Q ss_pred HHHHHHHHhcCCCCCcc-----HHHHHHHHHcCCChHHHHH
Q 047471 492 ERLAKQLFHLQPTTTSP-----YVLLSNLYASDGMWGDVAG 527 (579)
Q Consensus 492 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 527 (579)
...+++++ ..|..... ...++.++ ..|+.+++..
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 99876544 33445555 5677666655
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.90 E-value=5.3e-08 Score=99.49 Aligned_cols=147 Identities=13% Similarity=0.001 Sum_probs=90.7
Q ss_pred cCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 047471 316 LASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLF 392 (579)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (579)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777776654 44556677777777777888888887777743 23456777777777778888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhC
Q 047471 393 EQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRA---GKLLEAEEYTKKF 466 (579)
Q Consensus 393 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 466 (579)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7777742 224667777777777778888888888777764 234556677777777777 7777777777765
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=6.6e-08 Score=100.56 Aligned_cols=149 Identities=12% Similarity=-0.005 Sum_probs=71.3
Q ss_pred HhCCChHHHHHHHHHhh--------hCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHH
Q 047471 278 SHCADYEKGLSVFKEMS--------NDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYA 349 (579)
Q Consensus 278 ~~~~~~~~a~~~~~~m~--------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 349 (579)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+.. +.+...+..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 44455555555555544 11 12223344444445555555555555555555443 334444445555555
Q ss_pred hcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047471 350 KCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAY 426 (579)
Q Consensus 350 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 426 (579)
..|++++|...|++..+ .+...|..+..++.+.|++++ +..|++..+.. +-+...+..+..++...|++++|.+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555421 233344455555555555555 55555555421 11344444555555555555555555
Q ss_pred HHHhH
Q 047471 427 FNSME 431 (579)
Q Consensus 427 ~~~~~ 431 (579)
|+++.
T Consensus 557 ~~~al 561 (681)
T 2pzi_A 557 LDEVP 561 (681)
T ss_dssp HHTSC
T ss_pred HHhhc
Confidence 55554
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.86 E-value=6.4e-08 Score=85.59 Aligned_cols=186 Identities=11% Similarity=-0.038 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCC--CcchHhHHHHHHHhcCChHHHHHHHHccCC--CChh----hHH
Q 047471 302 DDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQ--DVGVGNALVNMYAKCGLISCSYKLFNEMLH--RNVV----SWN 373 (579)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 373 (579)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666778889999999999999999864221 135677888999999999999999999843 3322 445
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHHh
Q 047471 374 TIIAAHAN------------------HRLGGSALKLFEQMKATGIKPDSV-TFIGLLTACNHAGLVKEGEAYFNSMEKTY 434 (579)
Q Consensus 374 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 434 (579)
.+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHHH--
Confidence 55555553 57899999999999984 45432 2211110 0011111111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 435 GISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDP----IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 435 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
....+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|++.++.+....|++.+.
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 1234677888999999999999886 333432 567788888999999999999999999998887654
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=6.6e-08 Score=84.65 Aligned_cols=130 Identities=13% Similarity=-0.050 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 370 VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
..+..+...+...|++++|...|++. +.|+...+..+..++...|++++|...+++..+. .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556777888899999999999876 3567888888888899999999999999998874 34567788888999
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-Ch----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 450 LGRAGKLLEAEEYTKKF-PLGQ-DP----------------IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~-~~~p-~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
|...|++++|.+.+++. ...| +. ..+..+..++...|++++|...++++++..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999988886 2222 22 667788888889999999999999999999886
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.84 E-value=2.7e-08 Score=86.74 Aligned_cols=157 Identities=11% Similarity=-0.002 Sum_probs=115.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhccCCHHHHHHHHHHhHHHhCCC
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGIKPD-SVTFIG----------------LLTACNHAGLVKEGEAYFNSMEKTYGIS 437 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 437 (579)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...|++..+. .+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 344566677777777777777663 343 344444 788899999999999999999984 35
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 438 PDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRD--VVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
.+...+..+..++...|++++|.+.|++. ...| ++..+..+...+...|+ .+.+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 57788999999999999999999999997 4445 56788888888766543 45566667666543332 23466778
Q ss_pred HHHHcCCChHHHHHHHHHHHhCC
Q 047471 514 NLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
.++...|++++|+..+++..+..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88899999999999999987653
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=7.1e-09 Score=84.71 Aligned_cols=96 Identities=8% Similarity=-0.046 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
...+..+...+...|++++|...|++. ...| ++..|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344555666666777777777776665 2233 55666666677777777777777777777777777777777777777
Q ss_pred cCCChHHHHHHHHHHHhC
Q 047471 518 SDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 518 ~~g~~~~A~~~~~~~~~~ 535 (579)
..|++++|...+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776554
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=5.8e-08 Score=82.10 Aligned_cols=156 Identities=8% Similarity=-0.103 Sum_probs=108.5
Q ss_pred HhHHHHHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hhc
Q 047471 341 GNALVNMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTA-CNH 416 (579)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~ 416 (579)
...+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++.... .|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566677788888888888888754 34556777888888888888888888887664 3344333222111 122
Q ss_pred cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---hhhHHHHHHHHHhcCCHHHHH
Q 047471 417 AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD---PIVLGTLLSACRLRRDVVIGE 492 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~ 492 (579)
.+....|...+++..+. .+.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233467778887763 3345777888888888889999998888876 44554 457778888888889988888
Q ss_pred HHHHHHHh
Q 047471 493 RLAKQLFH 500 (579)
Q Consensus 493 ~~~~~~~~ 500 (579)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=4.2e-06 Score=76.64 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=150.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHhCcC--ChHHHHHHHHHHHHccCCCCcchHhHHHHHH----Hhc---
Q 047471 282 DYEKGLSVFKEMSNDHGVRPDDF-TFASILAACAGLA--SVQHGKQIHAHLIRMRLNQDVGVGNALVNMY----AKC--- 351 (579)
Q Consensus 282 ~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 351 (579)
..++|+.+++.+... .|+.. .++.--..+...| ++++++..++.+...+ |-+..+++.--..+ ...
T Consensus 48 ~s~~aL~~t~~~L~~---nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 48 YSERALHITELGINE---LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHH---CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 346788888887744 55443 3455555556666 7888888888777765 44555555444444 444
Q ss_pred CChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 047471 352 GLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGG--SALKLFEQMKATGIKPDSVTFIGLLTACNHAGL------V 420 (579)
Q Consensus 352 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~ 420 (579)
+++++++.+++.+.+ .+..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 677888888887743 34556666666666777777 888888888885432 56666655555556565 7
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCC-C----CCChhhHHHHHHHHHhcCCHHHHHHH
Q 047471 421 KEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE-AEEYTKKFP-L----GQDPIVLGTLLSACRLRRDVVIGERL 494 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~A~~~ 494 (579)
+++++.++.++.. .+-|...|+.+...+.+.|+..+ +.++..++. . ..++..+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8888888888773 35567777777777777776444 445666652 1 23556677777777778888888888
Q ss_pred HHHHHh-cCCCCCccHHHHHH
Q 047471 495 AKQLFH-LQPTTTSPYVLLSN 514 (579)
Q Consensus 495 ~~~~~~-~~p~~~~~~~~l~~ 514 (579)
++.+.+ .+|.....|...+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 888876 67876666655443
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=7.6e-07 Score=81.52 Aligned_cols=214 Identities=13% Similarity=0.055 Sum_probs=169.5
Q ss_pred CChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcC--ChHHHHHHHHccCC---CChhhHHHHHHHH----Hhc---CC
Q 047471 317 ASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCG--LISCSYKLFNEMLH---RNVVSWNTIIAAH----ANH---RL 384 (579)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 384 (579)
...++|+...+.+...+ |.+..+++.--..+...| +++++++.++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34568889999988876 556677787778888888 99999999999854 3444565544444 444 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC------h
Q 047471 385 GGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVK--EGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGK------L 456 (579)
Q Consensus 385 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 456 (579)
+++++.+++++.+.. +-+...|..-...+.+.|.++ ++++.++++++. .+-|-..|+.-..++.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999863 337778877777777788887 999999999985 35577778777777777776 8
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCccHHHHHHHHHcCCChHHHHHHHH
Q 047471 457 LEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDV-VIGERLAKQLFHLQ---PTTTSPYVLLSNLYASDGMWGDVAGARK 530 (579)
Q Consensus 457 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 530 (579)
+++++.++++ ...| |...|+.+...+.+.|.. +.+..+.+++.+++ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8899988876 3344 778898888888888774 55667888888876 8888999999999999999999999999
Q ss_pred HHHh
Q 047471 531 MLKD 534 (579)
Q Consensus 531 ~~~~ 534 (579)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.81 E-value=3e-08 Score=78.31 Aligned_cols=96 Identities=7% Similarity=-0.037 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
...+......|.+.|++++|++.|++. ...| ++..+..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 355777889999999999999999986 3444 67889999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 047471 518 SDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 518 ~~g~~~~A~~~~~~~~~~ 535 (579)
..|++++|.+.+++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.78 E-value=7.3e-08 Score=80.44 Aligned_cols=126 Identities=5% Similarity=-0.104 Sum_probs=95.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 047471 406 TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACR 483 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 483 (579)
.+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555566667777777777777777763 2345667777777778888888888877775 2233 5667788888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccHHHHHH--HHHcCCChHHHHHHHHHHH
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTTSPYVLLSN--LYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~ 533 (579)
..|++++|...++++++..|.++..+..+.. .+...|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999998887755444 4888899999999888764
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.78 E-value=5.8e-07 Score=83.05 Aligned_cols=160 Identities=7% Similarity=-0.107 Sum_probs=117.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hhHHHH
Q 047471 375 IIAAHANHRLGGSALKLFEQMKATGI-KPDSV----TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IEHFTC 445 (579)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 445 (579)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788889999998888877321 22211 2334556677778899999999888873111222 236788
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-----CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CccHH
Q 047471 446 LIDLLGRAGKLLEAEEYTKKFP-----LGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT------TSPYV 510 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 510 (579)
+..+|...|++++|.+.++++- .+.+ ..++..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888999999999988887752 1111 2467788888999999999999999999866433 46788
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHHh
Q 047471 511 LLSNLYASDGM-WGDVAGARKMLKD 534 (579)
Q Consensus 511 ~l~~~~~~~g~-~~~A~~~~~~~~~ 534 (579)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999888753
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=2.9e-07 Score=80.51 Aligned_cols=129 Identities=10% Similarity=-0.066 Sum_probs=105.1
Q ss_pred HhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047471 341 GNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLV 420 (579)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 420 (579)
+..+...+...|++++|...|++...++...|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45567778889999999999999988888888889999999999999999999988853 33577888888889999999
Q ss_pred HHHHHHHHHhHHHhCCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh
Q 047471 421 KEGEAYFNSMEKTYGISPDI----------------EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDP 472 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 472 (579)
++|...++++.+. .+.+. ..+..+..+|...|++++|.+.+++. ...|+.
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999998873 22222 67788888999999999999988886 555654
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=2.8e-07 Score=84.79 Aligned_cols=162 Identities=9% Similarity=-0.001 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC--CChhhHHHH-HHH
Q 047471 302 DDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH--RNVVSWNTI-IAA 378 (579)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-~~~ 378 (579)
+...+..+...+...|++++|...++++.+.. |.+...+..+...+...|++++|...++++.. |+....... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445555666667777777777777777654 44566677777788888888888888888754 433322222 223
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE 458 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (579)
+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 556667777777777777742 2346677777777778888888888888877651111125566777777777777777
Q ss_pred HHHHHHh
Q 047471 459 AEEYTKK 465 (579)
Q Consensus 459 A~~~~~~ 465 (579)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=4.5e-07 Score=79.15 Aligned_cols=173 Identities=10% Similarity=-0.062 Sum_probs=127.5
Q ss_pred HHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCC-CChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 047471 322 GKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLH-RNVVSWNTIIAAHANHR----LGGSALKLFEQMK 396 (579)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~ 396 (579)
|.+.|++..+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 445555555543 455566667777777777777777777643 355666777777776 6 8899999999988
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHh
Q 047471 397 ATGIKPDSVTFIGLLTACNH----AGLVKEGEAYFNSMEKTYGISPD---IEHFTCLIDLLGR----AGKLLEAEEYTKK 465 (579)
Q Consensus 397 ~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 465 (579)
+.| +...+..+...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 56667777777776 78999999999998764 332 6778888888888 7899999999998
Q ss_pred C-CCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCCC
Q 047471 466 F-PLGQDPIVLGTLLSACRLR-R-----DVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 466 ~-~~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p~ 504 (579)
. ...+++.....+...|... | +.++|..+++++.+.+..
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 7 3335666777777777653 3 899999999999987654
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.75 E-value=7.5e-08 Score=76.85 Aligned_cols=116 Identities=8% Similarity=-0.043 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CChhhHHHHHHH
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLG-QDPIVLGTLLSA 481 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~ 481 (579)
...+..+...+...|++++|...+++..+ ..+.+...+..+..++...|++++|.+.+++. ... .+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44455555556666666666666666654 22334555666666666666666666666654 222 345667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 482 CRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
+...|++++|...++++++.+|.++..+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888876654
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.75 E-value=1.7e-08 Score=92.62 Aligned_cols=191 Identities=8% Similarity=-0.105 Sum_probs=123.5
Q ss_pred cchHhHHHHHHHhcCChHHHHHHHHccC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 047471 338 VGVGNALVNMYAKCGLISCSYKLFNEML--HR-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTA 413 (579)
Q Consensus 338 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~ 413 (579)
...+..+...+.+.|++++|...|++.. .| +...|..+..+|.+.|++++|...+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445556667777777777777777763 23 5566777788888888888888888888774 34 46777778888
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGER 493 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 493 (579)
+...|++++|...|++..+...-.+ ..+...+....+..+...... .......++......+ ..+ ..|+.++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 8888888888888888776421111 011111111111111111111 2222323344443333 222 3689999999
Q ss_pred HHHHHHhcCCCCCccHHHHHHHHHcC-CChHHHHHHHHHHHhC
Q 047471 494 LAKQLFHLQPTTTSPYVLLSNLYASD-GMWGDVAGARKMLKDS 535 (579)
Q Consensus 494 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 535 (579)
.++++++.+|++......+...+.+. +.+++|.++|+.+.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998887777887777776 7788999999887653
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=2.7e-08 Score=84.25 Aligned_cols=125 Identities=11% Similarity=0.071 Sum_probs=66.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH-HHhcCCh--
Q 047471 380 ANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL-LGRAGKL-- 456 (579)
Q Consensus 380 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 456 (579)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34556666666666665532 224555666666666666666666666666553 12344455555555 4555655
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 457 LEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 457 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
++|...++++ ...| +...+..+...+...|++++|...++++++..|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 6666655554 2222 3445555555555566666666666666666655543
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=1.2e-07 Score=74.49 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCChhhHHHHHHH
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-P-LGQDPIVLGTLLSA 481 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 481 (579)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|..+++++ . .+.++..+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445666666677777777777777777663 2345566677777777777777777777765 2 23356677778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCC
Q 047471 482 CRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDG 520 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 520 (579)
+...|++++|...++++++..|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888889999999999999999988888888888776543
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=2.4e-07 Score=85.64 Aligned_cols=162 Identities=6% Similarity=-0.142 Sum_probs=113.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHHhC--CCCC--hhH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKATGIKPDS-----VTFIGLLTACNHAGLVKEGEAYFNSMEKTYG--ISPD--IEH 442 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~ 442 (579)
+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677888888888888877764322111 1233445556777888888888888765311 1111 347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----Cc
Q 047471 443 FTCLIDLLGRAGKLLEAEEYTKKFP----LGQD-----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT--T----TS 507 (579)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~ 507 (579)
++.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...++++++..++ + ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7788888888999988888887751 1222 257778888899999999999999999886532 1 45
Q ss_pred cHHHHHHHHHcCCChHHH-HHHHHHHH
Q 047471 508 PYVLLSNLYASDGMWGDV-AGARKMLK 533 (579)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A-~~~~~~~~ 533 (579)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 678899999999999999 77677664
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.73 E-value=9.2e-08 Score=75.97 Aligned_cols=117 Identities=9% Similarity=-0.056 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHH
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSA 481 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 481 (579)
...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...| ++..+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666666677778888888888777763 2345667777777788888888888877775 2233 46677788888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCCh
Q 047471 482 CRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMW 522 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 522 (579)
+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999988999999998887765
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.72 E-value=1e-07 Score=88.80 Aligned_cols=197 Identities=7% Similarity=-0.074 Sum_probs=150.2
Q ss_pred CcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047471 315 GLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQ 394 (579)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 394 (579)
..|++++|.+++++..+... .. . +...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~--~-------~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS--F-------MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC--S-------SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc--c-------cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 45788899999988876532 11 1 1115788888888775 35678889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 047471 395 MKAT----GIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLEAEEYTKK 465 (579)
Q Consensus 395 m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (579)
..+. |-.+. ..+|..+...|...|++++|+..+++..+.+.-..+ ..++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8763 11111 457888888899999999999999988764321111 3567788889988 999999999988
Q ss_pred C-CCCC---C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------cHHHHHHHHHcCCChHHHHHHHHH
Q 047471 466 F-PLGQ---D----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS------PYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 466 ~-~~~p---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
. ...| + ..++..+...+...|++++|+..+++++++.|.+.. .+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 1111 1 356778888999999999999999999998766543 567788899999999999999999
Q ss_pred HH
Q 047471 532 LK 533 (579)
Q Consensus 532 ~~ 533 (579)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.72 E-value=4.3e-08 Score=79.48 Aligned_cols=95 Identities=11% Similarity=-0.130 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
..+..+...+.+.|++++|...|++. ...| ++..|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44455666677777777777777765 2233 556667777777777778888888888888888777777778888888
Q ss_pred CCChHHHHHHHHHHHhC
Q 047471 519 DGMWGDVAGARKMLKDS 535 (579)
Q Consensus 519 ~g~~~~A~~~~~~~~~~ 535 (579)
.|++++|...+++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888887777777654
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=1.7e-07 Score=76.29 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=88.1
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHH
Q 047471 400 IKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLG 476 (579)
Q Consensus 400 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 476 (579)
+.|+ ...+..+...+.+.|++++|...|+++.+. .+.+...|..+..+|...|++++|.+.|++. ...| ++..+.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3453 456777777889999999999999999874 3556788899999999999999999999886 3445 578888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 477 TLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 477 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999854
No 132
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=1.3e-05 Score=79.47 Aligned_cols=45 Identities=7% Similarity=-0.202 Sum_probs=23.2
Q ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHh
Q 047471 185 GFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKC 230 (579)
Q Consensus 185 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 230 (579)
+..+|+++.... +-+...|...+..+...|+.+.|..+++.....
T Consensus 198 v~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 198 MHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 445555555432 222334444444455556666666666666555
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.68 E-value=1.2e-07 Score=89.47 Aligned_cols=94 Identities=12% Similarity=-0.066 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...|++++|+..|+++++++|+++..+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888876 3334 66788888899999999999999999999999999999999999999
Q ss_pred cCCChHHH-HHHHHHHH
Q 047471 518 SDGMWGDV-AGARKMLK 533 (579)
Q Consensus 518 ~~g~~~~A-~~~~~~~~ 533 (579)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 45666664
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.67 E-value=1.3e-07 Score=72.81 Aligned_cols=100 Identities=11% Similarity=-0.092 Sum_probs=81.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCccHHHHHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT--TTSPYVLLSN 514 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 514 (579)
+...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4455666777788888888888887775 22 335667788888888999999999999999999999 8899999999
Q ss_pred HHHcC-CChHHHHHHHHHHHhCCCC
Q 047471 515 LYASD-GMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 515 ~~~~~-g~~~~A~~~~~~~~~~~~~ 538 (579)
++... |++++|.+.++...+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999998876543
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=1.1e-07 Score=77.61 Aligned_cols=116 Identities=11% Similarity=-0.048 Sum_probs=90.0
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 047471 391 LFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL 468 (579)
Q Consensus 391 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 468 (579)
.++++.+ +.|+ ...+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|.+.|++. ..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444444 3443 455666777788889999999999988874 3456777888888899999999999988886 33
Q ss_pred CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 469 GQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 469 ~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
.| ++..+..+..++...|++++|+..|++++++.|+++....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 34 5677888888899999999999999999999998876643
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.3e-07 Score=74.76 Aligned_cols=95 Identities=6% Similarity=-0.091 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
..+..+...+.+.|++++|.+.|++. ...| ++..+..+..++...|++++|+..++++++++|+++..+..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44556666777777777777777765 2233 566777777778888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhC
Q 047471 519 DGMWGDVAGARKMLKDS 535 (579)
Q Consensus 519 ~g~~~~A~~~~~~~~~~ 535 (579)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 88888888888877654
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=1.3e-05 Score=73.84 Aligned_cols=160 Identities=13% Similarity=0.008 Sum_probs=85.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHH----HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCc-----chHh
Q 047471 272 TFIAACSHCADYEKGLSVFKEMSNDHGVRPDDF----TFASILAACAGLASVQHGKQIHAHLIRMRLNQDV-----GVGN 342 (579)
Q Consensus 272 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~ 342 (579)
..+..+...|++++|..++++........|+.. .+..+...+...++++.|...++++.+....... .+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678888999999999998876523333322 2334555666777888888888887764322211 1355
Q ss_pred HHHHHHHhcCChHHHHHHHHccCC------CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHH
Q 047471 343 ALVNMYAKCGLISCSYKLFNEMLH------RN----VVSWNTIIAAHANHRLGGSALKLFEQMKAT----GIKPD-SVTF 407 (579)
Q Consensus 343 ~li~~~~~~g~~~~A~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~ 407 (579)
.+..+|...|++++|...|+++.+ .+ ..++..+...|.+.|++++|+..+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 555555555665555555555421 01 113444445555555555555555544331 11111 3344
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHhH
Q 047471 408 IGLLTACNHAG-LVKEGEAYFNSME 431 (579)
Q Consensus 408 ~~ll~~~~~~~-~~~~a~~~~~~~~ 431 (579)
..+..++.+.| ++++|...+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 44444444444 2355555444443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=7.8e-08 Score=85.88 Aligned_cols=136 Identities=13% Similarity=-0.072 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHH
Q 047471 373 NTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD--IEHFTCLIDLL 450 (579)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 450 (579)
-.+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677778888888888777663 354334444445677888888888888755431 1 111 23566777888
Q ss_pred HhcCChHHHHHHHHhCCCC---CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 451 GRAGKLLEAEEYTKKFPLG---QD--PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
...|++++|++.|++.... |. .........++.+.|+.++|...|+++...+|+ +..+..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888876212 32 235566667778888888888888888888887 65555553
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=1.3e-07 Score=74.06 Aligned_cols=95 Identities=8% Similarity=-0.155 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD 519 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 519 (579)
.+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455677888899999999988886 3344 6778888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 047471 520 GMWGDVAGARKMLKDSG 536 (579)
Q Consensus 520 g~~~~A~~~~~~~~~~~ 536 (579)
|++++|+..+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887653
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.59 E-value=2.9e-07 Score=77.78 Aligned_cols=123 Identities=7% Similarity=-0.002 Sum_probs=90.0
Q ss_pred HhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHH-HHhcCCH--
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSA-CRLRRDV-- 488 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~-- 488 (579)
+...|++++|...+++..+. .+.+...+..+..+|...|++++|...+++. ...| ++..+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 34567788888888887764 3446677788888888888888888888876 2233 55666677777 6677887
Q ss_pred HHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 489 VIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 489 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
++|...++++++.+|+++..+..++.+|...|++++|...++++.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888888766543
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=6.9e-07 Score=69.24 Aligned_cols=108 Identities=10% Similarity=-0.029 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHH
Q 047471 406 TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACR 483 (579)
Q Consensus 406 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 483 (579)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++. ...| ++..+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555542 2234445555555555555555555555553 1122 3445555566666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 484 LRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 484 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
..|++++|...++++++.+|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666665555555544
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=1.8e-06 Score=79.76 Aligned_cols=161 Identities=11% Similarity=-0.077 Sum_probs=115.3
Q ss_pred HhHHHHHHHhcCChHHHHHHHHccCC--C-Ch------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 047471 341 GNALVNMYAKCGLISCSYKLFNEMLH--R-NV------VSWNTIIAAHANHRLGGSALKLFEQMKATGI---KPD--SVT 406 (579)
Q Consensus 341 ~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~ 406 (579)
+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456677788888888888876522 1 11 1234455667788899999999998876321 112 447
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-------Chh
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD-----IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-------DPI 473 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~ 473 (579)
++.+...|...|++++|...++++.+.....|+ ..++..++.+|...|++++|.+.+++. ...+ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888899999999999999988732111222 257888899999999999999998875 1111 146
Q ss_pred hHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 047471 474 VLGTLLSACRLRRDVVIG-ERLAKQLFHL 501 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 501 (579)
++..+...+...|++++| ...+++++.+
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 677888889999999999 7888888763
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.57 E-value=3.3e-07 Score=79.10 Aligned_cols=96 Identities=10% Similarity=-0.115 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
..+..+..+|...|++++|...+++. ...| +...+..+..++...|++++|...++++++++|+++..+..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677788888888888888888776 2233 567788888889999999999999999999999999999999999999
Q ss_pred CCChHHHH-HHHHHHHhCC
Q 047471 519 DGMWGDVA-GARKMLKDSG 536 (579)
Q Consensus 519 ~g~~~~A~-~~~~~~~~~~ 536 (579)
.|+..++. ..++.+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888776 5566665443
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=1.6e-07 Score=74.28 Aligned_cols=93 Identities=6% Similarity=-0.089 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------cHHHH
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS-------PYVLL 512 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l 512 (579)
.+..+...+.+.|++++|++.|++. ...| ++..+..+..++...|++++|++.++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555667777777777777777765 3334 4566777777777788888888888888877776654 45566
Q ss_pred HHHHHcCCChHHHHHHHHHHHh
Q 047471 513 SNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
+.++...|++++|++.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777778888888888777654
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=4.8e-07 Score=72.58 Aligned_cols=98 Identities=7% Similarity=-0.053 Sum_probs=65.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 438 PDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
.+...+..+...+...|++++|...|++. ...| ++..+..+...+...|++++|...++++++.+|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34555666666666666666666666654 2223 455666666667777777777777777777777777777777777
Q ss_pred HHcCCChHHHHHHHHHHHhC
Q 047471 516 YASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 516 ~~~~g~~~~A~~~~~~~~~~ 535 (579)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777776543
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=6.7e-07 Score=79.88 Aligned_cols=183 Identities=10% Similarity=-0.047 Sum_probs=128.3
Q ss_pred hcCChHHHHHHHHccCC--C-ChhhHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------
Q 047471 350 KCGLISCSYKLFNEMLH--R-NVVSWNTI-------IAAHANHRLGGSALKLFEQMKATGIKPD---------------- 403 (579)
Q Consensus 350 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~~~~p~---------------- 403 (579)
..++.+.|.+.|.++.. | ....|..+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 34566666666666532 2 23345444 3444444445555555554443 2332
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----h
Q 047471 404 ------SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDP----I 473 (579)
Q Consensus 404 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 473 (579)
......+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 112234556688999999999999998753 354446667777899999999999999987544443 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHLQ--PT-TTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.+..+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67778888999999999999999998543 43 445788999999999999999999999987543
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=3.3e-07 Score=76.31 Aligned_cols=111 Identities=8% Similarity=-0.129 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHH
Q 047471 403 DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLS 480 (579)
Q Consensus 403 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 480 (579)
+...+..+...+...|++++|+..|++.++. .+.+...+..+..+|.+.|++++|++.+++. ...| +...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567788888899999999999999999984 3457788999999999999999999999986 3344 5788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNL 515 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 515 (579)
++...|++++|...|+++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999998866655543
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.54 E-value=4.7e-07 Score=73.26 Aligned_cols=108 Identities=13% Similarity=-0.062 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSAC 482 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 482 (579)
..+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|...|++. ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 44555566677788888888888887763 3446677777888888888888888888775 2334 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
...|++++|...+++++++.|+++........
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 88999999999999999999888766554433
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=7.1e-07 Score=69.20 Aligned_cols=98 Identities=8% Similarity=-0.012 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
....+..++..+...|++++|.+.+++. ...| ++..+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999986 3334 6788888889999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhCC
Q 047471 517 ASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~ 536 (579)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987653
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=6e-07 Score=70.86 Aligned_cols=110 Identities=8% Similarity=-0.152 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSAC 482 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 482 (579)
..+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| ++..+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555556667777777777777777663 2345666777777777777777777777765 2334 456777777888
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCCccHHHHHHHH
Q 047471 483 RLRRDVVIGERLAKQLFHLQ------PTTTSPYVLLSNLY 516 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~ 516 (579)
...|++++|...++++++++ |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77766666666554
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=3.4e-06 Score=72.87 Aligned_cols=95 Identities=11% Similarity=0.011 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHH---hCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCh----h
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKT---YGISP--DIEHFTCLIDLLGRAGKLLEAEEYTKKFP----LGQDP----I 473 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~ 473 (579)
+..+...+...|++++|...+++..+. .+..| ....+..+...+...|++++|.+.+++.. ..+++ .
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 344444444445555554444444332 11111 12234444444555555555554444420 01111 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
++..+...+...|++++|...+++++++
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2344455555566666666666665553
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=9.7e-07 Score=73.44 Aligned_cols=95 Identities=11% Similarity=-0.046 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 369 VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
...|..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|+..+++.++. .+.+...+..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456667777777777888887777777742 225666777777777777788887777777764 2345667777777
Q ss_pred HHHhcCChHHHHHHHHhC
Q 047471 449 LLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~ 466 (579)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777887777777765
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=7.4e-07 Score=70.91 Aligned_cols=99 Identities=8% Similarity=-0.040 Sum_probs=88.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 437 SPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999986 4444 67788888889999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhC
Q 047471 515 LYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 515 ~~~~~g~~~~A~~~~~~~~~~ 535 (579)
++...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.49 E-value=1.6e-06 Score=74.93 Aligned_cols=130 Identities=10% Similarity=-0.044 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHh---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-C---
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTY---GISP-DIEHFTCLIDLLGRAGKLLEAEEYTKKFP----LGQ-D--- 471 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~--- 471 (579)
...+..+...+...|++++|...+++..+.. +.++ ....+..+...+...|++++|.+.+++.. ..+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 3344444444555555555555554443310 1111 22344555555556666665555555431 011 1
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC----ccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 472 -PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT--TT----SPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 472 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
...+..+...+...|++++|...++++++..+. ++ ..+..++.++...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 123444455555556666666666655543211 11 123455556666666666655555543
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=2.4e-06 Score=69.43 Aligned_cols=112 Identities=11% Similarity=-0.100 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHH
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGT 477 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 477 (579)
...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|.+.+++. ...| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 44455555556666666666666666653 2333 455556666666666777666666654 2223 4566667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS 518 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 518 (579)
+..++...|++++|...++++++.+|+++..+..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 77777788888888888888888888877766666665443
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=1.1e-06 Score=68.85 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|..+++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 22 3467788888999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhC
Q 047471 518 SDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 518 ~~g~~~~A~~~~~~~~~~ 535 (579)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998765
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.2e-06 Score=71.21 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=88.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHH
Q 047471 438 PDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLL 512 (579)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 512 (579)
.+...+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|...++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 45677888899999999999999999986 55676 57788888889999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhC
Q 047471 513 SNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 513 ~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+.++...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=3.5e-06 Score=70.00 Aligned_cols=128 Identities=8% Similarity=-0.119 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 370 VSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345667777888888888888888887742 335777777888888888888888888888874 34566778888888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-ChhhHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 047471 450 LGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTL--LSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
+...|++++|.+.+++. ...| +...+..+ ...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888998888888876 2233 34444333 3336677888888888887655
No 159
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.44 E-value=9.5e-05 Score=68.40 Aligned_cols=227 Identities=10% Similarity=0.051 Sum_probs=136.3
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHhCcC-ChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhc-C-
Q 047471 277 CSHCADYEKGLSVFKEMSNDHGVRPDD-FTFASILAACAGLA-SVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKC-G- 352 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 352 (579)
..+.+..++|+++++++... .|+. ..++.--..+...| .+++++.+++.+.... +-+..+++.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~---nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM---NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33445567788888888754 4543 33444444455556 4788888888887665 45566666666666665 6
Q ss_pred ChHHHHHHHHccCCCCh---hhHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 047471 353 LISCSYKLFNEMLHRNV---VSWNTIIAAHANHRLGG--------SALKLFEQMKATGIKPDSVTFIGLLTACNHAGL-- 419 (579)
Q Consensus 353 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-- 419 (579)
++++++++++.+.+.++ ..|+--.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 78888888888866444 34444444444444455 88888888888543 266777777666666665
Q ss_pred -----HHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhCC-C-----
Q 047471 420 -----VKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL--------------------LEAEEYTKKFP-L----- 468 (579)
Q Consensus 420 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~----- 468 (579)
++++++.+++++.. .+-|...|+.+-..+.+.|+. .+..++...+. .
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67888888888763 355667777777667666653 23333333331 1
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCccHH
Q 047471 469 --GQDPIVLGTLLSACRLRRDVVIGERLAKQLF-HLQPTTTSPYV 510 (579)
Q Consensus 469 --~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~ 510 (579)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 1334455555555666666666666666654 34554433333
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=2.2e-06 Score=84.40 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
...|..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456778888889999999999988886 3334 66788888999999999999999999999999999999999999999
Q ss_pred cCCChHHHH-HHHHHHHhC
Q 047471 518 SDGMWGDVA-GARKMLKDS 535 (579)
Q Consensus 518 ~~g~~~~A~-~~~~~~~~~ 535 (579)
+.|+++++. ..++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 999998876 456666544
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1e-06 Score=69.71 Aligned_cols=88 Identities=16% Similarity=0.060 Sum_probs=43.4
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-h---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CccHHHHHHHHHc
Q 047471 447 IDLLGRAGKLLEAEEYTKKF-PLGQD-P---IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT---TSPYVLLSNLYAS 518 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 518 (579)
...+...|++++|.+.|+++ ...|+ + ..+..+..++...|++++|...++++++..|++ +..+..++.++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444445555555444443 11221 1 234444444555555555555555555555555 3445555555555
Q ss_pred CCChHHHHHHHHHHHh
Q 047471 519 DGMWGDVAGARKMLKD 534 (579)
Q Consensus 519 ~g~~~~A~~~~~~~~~ 534 (579)
.|++++|...++.+.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.42 E-value=1.4e-06 Score=69.90 Aligned_cols=100 Identities=7% Similarity=-0.174 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHH
Q 047471 403 DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLS 480 (579)
Q Consensus 403 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 480 (579)
+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++. ...| ++..+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566667777777777777777777777763 2345667777777777788888887777775 2233 5667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
++...|++++|...++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888888877
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.41 E-value=1.6e-06 Score=68.55 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4566778889999999999999999986 3333 6778888899999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhCC
Q 047471 517 ASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 517 ~~~g~~~~A~~~~~~~~~~~ 536 (579)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987653
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.39 E-value=3e-05 Score=71.79 Aligned_cols=216 Identities=11% Similarity=0.010 Sum_probs=153.8
Q ss_pred cCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcC-ChHHHHHHHHccCC---CChhhHHHHHHHHHhc-C-ChHHHH
Q 047471 316 LASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCG-LISCSYKLFNEMLH---RNVVSWNTIIAAHANH-R-LGGSAL 389 (579)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~a~ 389 (579)
.+..++|+++++.+...+ |.+..+++.--..+...| .+++++.+++.+.. .+..+|+.-...+.+. + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567888888888876 556677777777777788 59999999999954 3455666666666665 6 889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC------
Q 047471 390 KLFEQMKATGIKPDSVTFIGLLTACNHAGLVK--------EGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGK------ 455 (579)
Q Consensus 390 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 455 (579)
++++++.+.. +-|...|+.-...+.+.|.++ ++++.++++++. .+-|...|+....++.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 9999999853 236677766555555555555 899999999985 35577888888888888776
Q ss_pred -hHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCC
Q 047471 456 -LLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDV--------------------VIGERLAKQLFHLQ------PTTT 506 (579)
Q Consensus 456 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~~~~------p~~~ 506 (579)
++++++.++++ ...| |...|+.+-..+.+.|.. .........+.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 67888888775 3445 677888777777766654 23333333333322 3556
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 507 SPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.+...|+.+|...|+.++|.++++.+.++
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 67888999999999999999999998643
No 165
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=1.1e-06 Score=70.75 Aligned_cols=61 Identities=11% Similarity=-0.033 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCccH----HHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHL-------QPTTTSPY----VLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|+..+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666777777777777777777777777 88887788 8888888888888888888887754
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=2.4e-06 Score=67.44 Aligned_cols=105 Identities=6% Similarity=-0.022 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKP-DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
.+..+...+.+.|++++|+..|++..+. .| +...|..+..+|...|++++|+..+++.++...- +...+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~--- 82 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE--TRADYKLI--- 82 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCCHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc--cchhhHHH---
Confidence 3444555555555555555555555542 22 2444445555555555555555555554432000 00000000
Q ss_pred HHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 450 LGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
..++..+..++...|++++|++.|+++++..|+
T Consensus 83 ----------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 83 ----------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 123444555666677777777777777776664
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.34 E-value=4e-06 Score=64.13 Aligned_cols=100 Identities=12% Similarity=-0.069 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---ChhhHHHHHH
Q 047471 405 VTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ---DPIVLGTLLS 480 (579)
Q Consensus 405 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 480 (579)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34444555555666666666666666553 2334455556666666666666666666654 2223 3556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 047471 481 ACRLR-RDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 481 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 506 (579)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 67777 777777777777777777654
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=1.1e-06 Score=87.09 Aligned_cols=118 Identities=5% Similarity=-0.100 Sum_probs=90.1
Q ss_pred HHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHH
Q 047471 412 TACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVV 489 (579)
Q Consensus 412 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 489 (579)
..+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456678888888888888764 3345677788888888888888888888775 3344 5677888888889999999
Q ss_pred HHHHHHHHHHhcCCCCCccHHHHHHH--HHcCCChHHHHHHHHH
Q 047471 490 IGERLAKQLFHLQPTTTSPYVLLSNL--YASDGMWGDVAGARKM 531 (579)
Q Consensus 490 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 531 (579)
+|++.++++++++|+++..+..++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999888888887 8888999999988873
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=4.9e-07 Score=70.29 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=47.7
Q ss_pred cCChHHHHHHHHhC-CC---CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHH
Q 047471 453 AGKLLEAEEYTKKF-PL---GQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAG 527 (579)
Q Consensus 453 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 527 (579)
.|++++|+..|++. .. .| +...+..+...+...|++++|+..++++++.+|+++..+..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555554 22 12 234455555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhC
Q 047471 528 ARKMLKDS 535 (579)
Q Consensus 528 ~~~~~~~~ 535 (579)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.6e-06 Score=81.65 Aligned_cols=149 Identities=10% Similarity=-0.078 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 369 VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777788889999999999988873 454332 233344444432221 136778888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH-cCCChHHH
Q 047471 449 LLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA-SDGMWGDV 525 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 525 (579)
+|.+.|++++|...+++. ...| +...+..+..++...|++++|+..|+++++++|+++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886 3344 66788888899999999999999999999999999999998888844 45677788
Q ss_pred HHHHHHHHhCCC
Q 047471 526 AGARKMLKDSGL 537 (579)
Q Consensus 526 ~~~~~~~~~~~~ 537 (579)
...+++|.....
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888876543
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=1.5e-06 Score=68.76 Aligned_cols=107 Identities=7% Similarity=-0.055 Sum_probs=58.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----hhhHHH
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PL----GQD----PIVLGT 477 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 477 (579)
+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++. .. .++ ...+..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555442 2233444455555555555555555555543 11 111 445566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
+...+...|++++|...++++++..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66667777777777777777777776 355555555443
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=6.2e-06 Score=65.11 Aligned_cols=102 Identities=12% Similarity=0.000 Sum_probs=67.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----hhhHHHHHHH
Q 047471 410 LLTACNHAGLVKEGEAYFNSMEKTYGISPDI---EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD----PIVLGTLLSA 481 (579)
Q Consensus 410 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 481 (579)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++++ ...|+ +..+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3445566677777777777776641 2222 35566677777777777777777665 22332 4556677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCccHHHHH
Q 047471 482 CRLRRDVVIGERLAKQLFHLQPTTTSPYVLLS 513 (579)
Q Consensus 482 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 513 (579)
+...|++++|...++++++..|+++.......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 88888888899889888888888765444433
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=5.6e-06 Score=81.94 Aligned_cols=116 Identities=12% Similarity=0.037 Sum_probs=62.6
Q ss_pred HHHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047471 346 NMYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKE 422 (579)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 422 (579)
..+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666666532 234556666666666666666666666666632 1235556666666666666666
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 047471 423 GEAYFNSMEKTYGISPDIEHFTCLIDL--LGRAGKLLEAEEYTK 464 (579)
Q Consensus 423 a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 464 (579)
|.+.++++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666531 2223334444433 555666666666665
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.29 E-value=3.8e-06 Score=65.56 Aligned_cols=97 Identities=12% Similarity=-0.059 Sum_probs=62.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc
Q 047471 408 IGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLR 485 (579)
Q Consensus 408 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 485 (579)
..+...+.+.|++++|...++++.+. .+.+...+..+..++...|++++|+..+++. ...| ++..+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33445566677777777777777663 2345666667777777777777777777665 3334 456677777777788
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 047471 486 RDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 486 ~~~~~A~~~~~~~~~~~p~~~ 506 (579)
|++++|+..++++++.+|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888887654
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00013 Score=67.18 Aligned_cols=48 Identities=15% Similarity=-0.033 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHHHHH---HcCCChHHHHHHHHHHHh
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPYVLLSNLY---ASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 534 (579)
-++++++.++++++..|++.-.+..++... ...|..++....++++.+
T Consensus 253 ~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 253 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 355666666666666666533332222211 134555566666666554
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=2.3e-06 Score=70.97 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
..+..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34555555556666666666666666666666666666666666666666666666665544
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00016 Score=66.52 Aligned_cols=230 Identities=13% Similarity=0.058 Sum_probs=147.5
Q ss_pred hCCCh-HHHHHHHHHhhhCCCCCCCHHH-HHHHHHHHhCcCC----------hHHHHHHHHHHHHccCCCCcchHhHHHH
Q 047471 279 HCADY-EKGLSVFKEMSNDHGVRPDDFT-FASILAACAGLAS----------VQHGKQIHAHLIRMRLNQDVGVGNALVN 346 (579)
Q Consensus 279 ~~~~~-~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 346 (579)
+.|.+ ++|++++..+.. +.|+..| ++.--..+...+. ++++..+++.+.... |-+..+|+.-.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44443 367777777763 3454433 2222122221221 566777777777654 556667766666
Q ss_pred HHHhcC--ChHHHHHHHHccCC---CChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---
Q 047471 347 MYAKCG--LISCSYKLFNEMLH---RNVVSWNTIIAAHANHRL-GGSALKLFEQMKATGIKPDSVTFIGLLTACNHA--- 417 (579)
Q Consensus 347 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 417 (579)
++.+.+ .+++++.+++.+.+ .|...|+--.-.+...|. ++++++.++++.+..+. |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 666666 37888888888854 455566666666667777 58899999999886432 566665554444333
Q ss_pred -----------CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCChhh
Q 047471 418 -----------GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRA-----------GKLLEAEEYTKKF-PLGQDPIV 474 (579)
Q Consensus 418 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~~ 474 (579)
+.++++++.+...+.. .|-|...|+.+-..+.+. +.++++++.++++ ...||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 4578889999888874 455677777666665554 4567888888776 456664 3
Q ss_pred HHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 475 LGTLLSAC-----RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 475 ~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
|..+..+. ...|..++....+.++.+++|....-|..+...+
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 43322222 1357788999999999999999888887776654
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=1e-05 Score=76.14 Aligned_cols=146 Identities=8% Similarity=-0.084 Sum_probs=105.9
Q ss_pred ChHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHh
Q 047471 353 LISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD--------------SVTFIGLLTACN 415 (579)
Q Consensus 353 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~ 415 (579)
++++|...|+.... | +...|..+...|.+.|++++|+..|++..+...... ...+..+..++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444322 2 344667777888888888888888888887432211 477888888888
Q ss_pred ccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHH-H
Q 047471 416 HAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIG-E 492 (579)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A-~ 492 (579)
+.|++++|+..++++++. .+.+...+..+..+|...|++++|...|+++ ...| +...+..+...+...|+.++| .
T Consensus 208 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998874 3456778888889999999999999988886 3344 566777788888888888888 4
Q ss_pred HHHHHHHh
Q 047471 493 RLAKQLFH 500 (579)
Q Consensus 493 ~~~~~~~~ 500 (579)
..++++++
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666654
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1e-05 Score=79.36 Aligned_cols=163 Identities=4% Similarity=-0.228 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHHh---CCCCC-hhH
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKAT-GIKPDSV----TFIGLLTACNHAGLVKEGEAYFNSMEKTY---GISPD-IEH 442 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~ 442 (579)
+..+...|...|++++|.+++..+... +..++.. ..+.+-..+...|+.+.|..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 456777788888888888887776552 1111211 22233333456678888888877765431 22222 356
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC----C---CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC----Cc
Q 047471 443 FTCLIDLLGRAGKLLEAEEYTKKF----P---LGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP---TT----TS 507 (579)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~----~~ 507 (579)
+..++..|...|++++|..+++++ . .++ ...++..++..|...|++++|..++++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 677888888888888888887764 1 112 234667777888888999999999888887542 21 23
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 508 PYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 508 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.+..++..+...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677788888999998887776643
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=2.9e-06 Score=67.08 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CccHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PL-GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT-------TSPYV 510 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~ 510 (579)
...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 356778889999999999999999986 22 3467788888899999999999999999999998876 77899
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 511 LLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.++.++...|++++|.+.+++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=5.4e-07 Score=77.74 Aligned_cols=95 Identities=8% Similarity=-0.096 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C----------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 441 EHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-D----------------PIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
..+..+...+...|++++|.+.|++. ...| + ...+..+..++...|++++|+..++++++.+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555666666777777777766664 1122 2 2677788888999999999999999999999
Q ss_pred CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 503 PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 503 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
|+++..+..++.+|...|++++|...+++..+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998765
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.24 E-value=5.8e-06 Score=75.61 Aligned_cols=113 Identities=6% Similarity=-0.205 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHH
Q 047471 403 DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLS 480 (579)
Q Consensus 403 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 480 (579)
+...+..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4667778888899999999999999999874 3447788899999999999999999999886 4555 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 481 ACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 481 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
++...|++++|...++++++++|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999999988766655555444
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.23 E-value=4.3e-06 Score=79.61 Aligned_cols=90 Identities=8% Similarity=-0.095 Sum_probs=78.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLY 516 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 516 (579)
+...|..+..+|.+.|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++++|+++..+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999886 4455 5678888889999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHH
Q 047471 517 ASDGMWGDVAGA 528 (579)
Q Consensus 517 ~~~g~~~~A~~~ 528 (579)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877653
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=3.9e-06 Score=69.26 Aligned_cols=61 Identities=11% Similarity=0.005 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 474 VLGTLLSACRLRRDVVIGERLAKQLFHLQPT------TTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 474 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
.+..+...+...|++++|...++++++..+. .+..+..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4445555666667777777777766654321 134566777788888888888887777654
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=5.4e-06 Score=78.05 Aligned_cols=152 Identities=7% Similarity=-0.077 Sum_probs=81.8
Q ss_pred chHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047471 339 GVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG 418 (579)
Q Consensus 339 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 418 (579)
..+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4466777888899999999999999754222111 1223334444433221 136777888899999
Q ss_pred CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-hhhHHHHHHH-HHhcCCHHHHHHHH
Q 047471 419 LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQD-PIVLGTLLSA-CRLRRDVVIGERLA 495 (579)
Q Consensus 419 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~A~~~~ 495 (579)
++++|+..++++++. .+.+...+..+..+|...|++++|.+.|++. ...|+ ...+..+... ....+..+.+...|
T Consensus 245 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 3456788899999999999999999999987 45564 3444444444 23456788889999
Q ss_pred HHHHhcCCCCCc
Q 047471 496 KQLFHLQPTTTS 507 (579)
Q Consensus 496 ~~~~~~~p~~~~ 507 (579)
.++++..|.++.
T Consensus 323 ~~~l~~~p~~~~ 334 (338)
T 2if4_A 323 KGIFKGKDEGGA 334 (338)
T ss_dssp ------------
T ss_pred HHhhCCCCCCCC
Confidence 999999987653
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=2.9e-06 Score=70.35 Aligned_cols=78 Identities=17% Similarity=0.071 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ccHHHHHHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT-SPYVLLSNL 515 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 515 (579)
+...|..+..+|.+.|++++|...+++. ...| ++..+..+..++...|++++|...++++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456778888888899999998888876 3344 567888888899999999999999999999999987 445455444
Q ss_pred H
Q 047471 516 Y 516 (579)
Q Consensus 516 ~ 516 (579)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=7.5e-05 Score=75.24 Aligned_cols=169 Identities=9% Similarity=-0.022 Sum_probs=132.1
Q ss_pred ChHHHHHHHHccCC--C-ChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 047471 353 LISCSYKLFNEMLH--R-NVVSWNTIIAAHANHRL----------GGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG- 418 (579)
Q Consensus 353 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 418 (579)
..++|++.++.+.. | +...|+.-..++...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567788877743 2 33456655555655566 899999999999853 236777887777788888
Q ss_pred -CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---------
Q 047471 419 -LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG-KLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLR--------- 485 (579)
Q Consensus 419 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 485 (579)
+++++++.++++.+. .+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999984 4557788888888888888 899999998887 4455 667888777776653
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHH
Q 047471 486 -----RDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGD 524 (579)
Q Consensus 486 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 524 (579)
+.++++.+.++++++.+|++..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988554
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=0.00067 Score=66.28 Aligned_cols=190 Identities=12% Similarity=-0.063 Sum_probs=123.9
Q ss_pred HHHHhcCChhHHHHHHHhcCCCC--------------------cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCH
Q 047471 244 ALYSKFNLIGEAEKAFRLIEEKD--------------------LISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDD 303 (579)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 303 (579)
..+.+.|++++|.+.|..+.+.+ ..++..+...|...|++++|.+.+.......+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34455666777766666554310 0135667788888888888888888776431222222
Q ss_pred H----HHHHHHHHHhCcCChHHHHHHHHHHHHc----cCCC-CcchHhHHHHHHHhcCChHHHHHHHHccC----C----
Q 047471 304 F----TFASILAACAGLASVQHGKQIHAHLIRM----RLNQ-DVGVGNALVNMYAKCGLISCSYKLFNEML----H---- 366 (579)
Q Consensus 304 ~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~---- 366 (579)
. ..+.+-..+...|+++.+..++...... +..+ -..++..+...|...|++++|..+++++. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2 2222333445678888888888877643 2111 23466778888899999999998888762 1
Q ss_pred C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 367 R-NVVSWNTIIAAHANHRLGGSALKLFEQMKAT--GIK-P-D--SVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 367 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
+ ....+..++..|...|++++|..++++.... .+. | . ...+..+...+...+++++|...|.+..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 2346777888899999999999998877642 111 2 1 234556666778889999998888777653
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=5.9e-06 Score=66.45 Aligned_cols=74 Identities=12% Similarity=-0.085 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC-hhhH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF-PL-------GQD-PIVL----GTLLSACRLRRDVVIGERLAKQLFHLQPTTTSP 508 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 508 (579)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6666777777777777777766654 33 674 4567 888899999999999999999999999999887
Q ss_pred HHHHHHH
Q 047471 509 YVLLSNL 515 (579)
Q Consensus 509 ~~~l~~~ 515 (579)
+..+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.14 E-value=1.3e-06 Score=67.79 Aligned_cols=91 Identities=12% Similarity=0.000 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHHhHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 047471 417 AGLVKEGEAYFNSMEKTYG--ISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGE 492 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~ 492 (579)
.|++++|+..|++..+. + .+.+...+..+..+|...|++++|.+.+++. ...| ++..+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666542 1 1223455666666677777777777776665 2233 4566677777777888888888
Q ss_pred HHHHHHHhcCCCCCcc
Q 047471 493 RLAKQLFHLQPTTTSP 508 (579)
Q Consensus 493 ~~~~~~~~~~p~~~~~ 508 (579)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877654
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.09 E-value=1.3e-05 Score=60.02 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=56.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
++..+..+...+...|++++|+..|+++++.+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888888999999999999999999999999999999999999999999988887643
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.09 E-value=8.6e-07 Score=67.98 Aligned_cols=93 Identities=12% Similarity=-0.034 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CccHH
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT------TSPYV 510 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 510 (579)
+...+..+...+...|++++|.+.+++. ...| ++..+..+..++...|++++|+..++++++++|++ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456677778888888888888888775 2333 66778888888899999999999999999999998 66777
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 047471 511 LLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 511 ~l~~~~~~~g~~~~A~~~~~~ 531 (579)
.++.++...|+.++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 778888777777666555443
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=2.2e-05 Score=64.62 Aligned_cols=133 Identities=14% Similarity=0.017 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----hh
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIK-PD----SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----IE 441 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 441 (579)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455566666667777777777666542100 11 135556666677777777777777776553211111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKFP----LGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
.+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|.+.+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 55666777777888888877776641 1111 24566677778888999999999988887543
No 194
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.06 E-value=2.6e-05 Score=73.21 Aligned_cols=237 Identities=10% Similarity=0.083 Sum_probs=176.0
Q ss_pred CchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcccC-CCHhhHHHHHHHHhccC
Q 047471 36 DVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMHLL-PNEYIFASAISACAGIQ 114 (579)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-p~~~~~~~ll~~~~~~~ 114 (579)
.+.+|+.|..+....|++.+|++.| ++..|+..|..+|.+..+.|++++-+..+...++. -++..=+.++-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 4567889999999999999998776 33467788899999999999999999999888877 55566678889999998
Q ss_pred ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCC------------------------CCCcchHH
Q 047471 115 SLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAF------------------------EPNLVSFN 170 (579)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~~ 170 (579)
++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+. ..++.+|-
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 8876554432 3555555667778888888888888776532 14677899
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcC
Q 047471 171 ALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFN 250 (579)
Q Consensus 171 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 250 (579)
.+-.+|...+++.-|.-.--.++- .|| ....++..|...|.+++-..+++.-.. --.....+|+.|.-.|++-
T Consensus 204 eV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglg-lErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 204 EVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT-STTCCHHHHHHHHHHHHSS-
T ss_pred HHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHhc-
Confidence 999999999998887765544432 222 344566678889999999888887663 2245677889999999885
Q ss_pred ChhHHHHHHHhcCC----C-------CcchHHHHHHHHHhCCChHHHHH
Q 047471 251 LIGEAEKAFRLIEE----K-------DLISWNTFIAACSHCADYEKGLS 288 (579)
Q Consensus 251 ~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 288 (579)
++++..+.++..-. | ....|..++-.|++-.+++.|..
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 46666666655443 1 34568888888888888887653
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=2.7e-05 Score=56.90 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=61.5
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCC
Q 047471 469 GQDPIVLGTLLSACRLRRD---VVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLK 538 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 538 (579)
++++..+..+..++...++ .++|..+++++++.+|+++.....++..+...|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3577788888888766555 799999999999999999999999999999999999999999999887654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=1.4e-05 Score=78.49 Aligned_cols=124 Identities=9% Similarity=0.070 Sum_probs=90.3
Q ss_pred HhccCCHHHHHHHHHHhHHHhC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCh-hhHHH
Q 047471 414 CNHAGLVKEGEAYFNSMEKTYG--ISP----DIEHFTCLIDLLGRAGKLLEAEEYTKKF---------PLGQDP-IVLGT 477 (579)
Q Consensus 414 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ 477 (579)
+...|++++|+.++++..+... +.| ...+++.|+.+|...|++++|..++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567777777777777655321 112 2356777778888888888887777664 123332 56778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCcc---HHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 478 LLSACRLRRDVVIGERLAKQLFH-----LQPTTTSP---YVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
|...|..+|++++|+.+++++++ ++|++|.+ ...+..++...|.+++|...++++++...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999887 56777654 45788899999999999999999987543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.98 E-value=2.1e-05 Score=57.35 Aligned_cols=81 Identities=21% Similarity=0.149 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYA 517 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 517 (579)
...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666677777777777777777765 2223 55667777788888888888888888888888888888888888776
Q ss_pred cCC
Q 047471 518 SDG 520 (579)
Q Consensus 518 ~~g 520 (579)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=1.9e-05 Score=60.82 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
++..+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555556666666666666666666666666666666666666666666666666666543
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.89 E-value=3e-05 Score=73.77 Aligned_cols=113 Identities=6% Similarity=-0.059 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHH
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQ-DPIVLGTLLSAC 482 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 482 (579)
...+..+...+.+.|++++|+..|+++++.. +.. ......+++. ...| +...+..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456667777788888888888888777531 000 0000111111 1122 456788888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 483 RLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 483 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.+.|++++|+..++++++++|+++..+..++.+|...|++++|+..+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998765
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00012 Score=58.41 Aligned_cols=86 Identities=8% Similarity=-0.121 Sum_probs=39.2
Q ss_pred HHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHc----CC
Q 047471 449 LLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRL----RRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYAS----DG 520 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 520 (579)
.|...+..++|.++|++.....++.....+...|.. .+|+++|..+++++.+. .++..+..|+.+|.. .+
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCc
Confidence 333333333344444433212333333444444433 44555555555555544 234455555555555 45
Q ss_pred ChHHHHHHHHHHHhCC
Q 047471 521 MWGDVAGARKMLKDSG 536 (579)
Q Consensus 521 ~~~~A~~~~~~~~~~~ 536 (579)
+.++|.+++++..+.|
T Consensus 112 d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 112 NEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5555555555554443
No 201
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.82 E-value=0.0002 Score=70.50 Aligned_cols=129 Identities=6% Similarity=-0.102 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHHh
Q 047471 369 VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPD--------------SVTFIGLLTACNHAGLVKEGEAYFNSMEKTY 434 (579)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 434 (579)
...|..+...+.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 34566677778888888888888888877321111 467778888888899999999999988874
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 047471 435 GISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGER-LAKQLF 499 (579)
Q Consensus 435 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~ 499 (579)
.+.+...+..+..+|...|++++|...|+++ ...| +...+..+...+...++.+++.+ .+++++
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888899999999999988886 4555 45667777777777777776653 344443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.78 E-value=1.1e-05 Score=64.83 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047471 417 AGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAK 496 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 496 (579)
.+.+++|.+.++...+. -+.+...|..+..++...|+++.+.+.+ +.+++|+..|+
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~le 70 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHHH
Confidence 34455555555555542 2334455555555555554443222211 12568888888
Q ss_pred HHHhcCCCCCccHHHHHHHHHcCC-----------ChHHHHHHHHHHHhCC
Q 047471 497 QLFHLQPTTTSPYVLLSNLYASDG-----------MWGDVAGARKMLKDSG 536 (579)
Q Consensus 497 ~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~ 536 (579)
++++++|+++.+|..++.+|.+.| ++++|++.|++..+..
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 888888888888888888888764 7888888888877653
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=6.6e-05 Score=57.13 Aligned_cols=66 Identities=9% Similarity=-0.150 Sum_probs=60.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
+...+..+...+...|++++|+..++++++.+|+++..+..++.++...|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456777888889999999999999999999999999999999999999999999999999998654
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=7.5e-05 Score=73.35 Aligned_cols=111 Identities=10% Similarity=-0.041 Sum_probs=86.5
Q ss_pred HHHHhcCChHHHHHHHHhC---------CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---cH
Q 047471 448 DLLGRAGKLLEAEEYTKKF---------PLGQD-PIVLGTLLSACRLRRDVVIGERLAKQLFH-----LQPTTTS---PY 509 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~ 509 (579)
..+...|++++|..++++. +..|+ ..+++.|..+|...|++++|..+++++++ ++|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999888774 12232 25688999999999999999999999987 4566654 58
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCeEEEEeecccCCcchhhHHHHHHhhh
Q 047471 510 VLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGTFEKFTVAEFSHSKIGEINYMLKTLS 576 (579)
Q Consensus 510 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (579)
..|+.+|..+|++++|..++++..+--. .+-..+||...+++.+|+..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~ 445 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTE 445 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHH
Confidence 8899999999999999999998865311 112256999999998887765
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=0.00036 Score=70.32 Aligned_cols=151 Identities=13% Similarity=0.023 Sum_probs=122.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCC----------HHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 047471 382 HRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGL----------VKEGEAYFNSMEKTYGISPDIEHFTCLIDLL 450 (579)
Q Consensus 382 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (579)
....++|++.++++... .|+ ...|+.--.++...|+ ++++++.++.+.+. .+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34457889999999994 565 5556655555555555 89999999999984 456778888888888
Q ss_pred HhcC--ChHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcC------
Q 047471 451 GRAG--KLLEAEEYTKKF-PLG-QDPIVLGTLLSACRLRR-DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASD------ 519 (579)
Q Consensus 451 ~~~g--~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 519 (579)
.+.| +++++++.++++ ... .+...|+.-...+...| .++++.+.++++++.+|.|.++|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 779999999998 333 47788988888888888 899999999999999999999999999998874
Q ss_pred --------CChHHHHHHHHHHHhCC
Q 047471 520 --------GMWGDVAGARKMLKDSG 536 (579)
Q Consensus 520 --------g~~~~A~~~~~~~~~~~ 536 (579)
+.++++++.++......
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC
Confidence 55788988888877543
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.00058 Score=54.33 Aligned_cols=112 Identities=12% Similarity=-0.074 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHH
Q 047471 383 RLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGR----AGKLLE 458 (579)
Q Consensus 383 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 458 (579)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 34443 666677778888999999999874 466778888888887 789999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 047471 459 AEEYTKKFPLGQDPIVLGTLLSACRL----RRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 459 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 503 (579)
|.++|++.....++.....+...|.. .+|.++|..+++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999997445678888888888888 8999999999999998764
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=3.7e-05 Score=61.69 Aligned_cols=104 Identities=13% Similarity=0.007 Sum_probs=77.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLV----------KEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
..+.+.+++|.+.+++..+.. +.+...|..+..++...+++ ++|+..|++.++. .+.+...|..+..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 456678899999999999853 33678888888888887765 5888888888763 2335567777888
Q ss_pred HHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 047471 449 LLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTT 506 (579)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 506 (579)
+|...|.+ .|+... ..|++++|++.|+++++++|+++
T Consensus 89 ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 89 AYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCH
Confidence 87776653 344311 13789999999999999999974
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.63 E-value=8.3e-05 Score=71.74 Aligned_cols=105 Identities=12% Similarity=0.004 Sum_probs=77.1
Q ss_pred hcCChHHHHHHHHhC---------CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---cHHHHH
Q 047471 452 RAGKLLEAEEYTKKF---------PLGQDP-IVLGTLLSACRLRRDVVIGERLAKQLFH-----LQPTTTS---PYVLLS 513 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~ 513 (579)
..|++++|..++++. +..|+. .+++.+..+|...|++++|+.+++++++ ++|++|. .+..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777766553 122322 5678888889999999999999998887 4566554 588899
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCeEEEEeecccCCcchhhHHHHHHh
Q 047471 514 NLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGTFEKFTVAEFSHSKIGEINYMLKT 574 (579)
Q Consensus 514 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (579)
.+|..+|++++|..++++..+--. ..-...||...++.++|+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME------------------VAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH------------------HHcCCCChHHHHHHHHHhc
Confidence 999999999999999998865311 1122569999999988864
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=8.7e-05 Score=57.01 Aligned_cols=80 Identities=6% Similarity=-0.129 Sum_probs=50.8
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 423 GEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 423 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
|+..+++..+ ..+.+...+..+..+|...|++++|.+.+++. ...| +...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555554 22334556666666666777777777766664 2223 455666677777777777777777777777
Q ss_pred cCCC
Q 047471 501 LQPT 504 (579)
Q Consensus 501 ~~p~ 504 (579)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7664
No 210
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00016 Score=52.48 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 471 DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 471 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
+...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34567778888999999999999999999999999999999999999999999999999998764
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.57 E-value=3.3e-05 Score=72.60 Aligned_cols=238 Identities=9% Similarity=0.065 Sum_probs=161.8
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcccHHHHHHHhcc
Q 047471 134 ISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFSFAGGLEICSV 213 (579)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 213 (579)
.+.+|..|..+....+++.+|++.|-+. .|...|..+|....+.|.+++-+..+...++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3456777888888888888887766444 455567788888888888888888887776653333 344577888888
Q ss_pred cCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHhcCC------------------------CCcch
Q 047471 214 SNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRLIEE------------------------KDLIS 269 (579)
Q Consensus 214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~ 269 (579)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888776554432 35555556777778888888888777776653 36778
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHH
Q 047471 270 WNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYA 349 (579)
Q Consensus 270 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 349 (579)
|..+-.+|...+++.-|.-.--.+.-. || ....++..|-..|.+++...+++.-.... .....+|+.|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence 999999999999888776554444322 22 12234455777888888877777666332 456677888887777
Q ss_pred hcCChHHHHHHHHccCC-----------CChhhHHHHHHHHHhcCChHHHHH
Q 047471 350 KCGLISCSYKLFNEMLH-----------RNVVSWNTIIAAHANHRLGGSALK 390 (579)
Q Consensus 350 ~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~ 390 (579)
+- ++++-.+.++..-. .....|..++-.|.+..+++.|..
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 64 56666666555421 234467778888888777776643
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.56 E-value=0.00024 Score=68.66 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=85.1
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCC---cc
Q 047471 447 IDLLGRAGKLLEAEEYTKKF-P-----LGQD----PIVLGTLLSACRLRRDVVIGERLAKQLFH-----LQPTTT---SP 508 (579)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~---~~ 508 (579)
+..+.+.|++++|.+++++. . ..|+ ..+++.+..+|...|++++|+.+++++++ ++|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778888888888764 1 2232 25678888899999999999999999987 446655 45
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCCCceEEEEcCeEEEEeecccCCcchhhHHHHHHhhh
Q 047471 509 YVLLSNLYASDGMWGDVAGARKMLKDSGLKKEPSYSMIEVQGTFEKFTVAEFSHSKIGEINYMLKTLS 576 (579)
Q Consensus 509 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (579)
+..|+.+|..+|++++|..++++..+--. .....+||...+++++|+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHH
Confidence 88899999999999999999998865211 112256999999999998764
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.41 E-value=0.018 Score=43.67 Aligned_cols=146 Identities=9% Similarity=0.013 Sum_probs=109.0
Q ss_pred HHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 047471 374 TIIAA--HANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLG 451 (579)
Q Consensus 374 ~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (579)
.|+.+ +.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+.|.+ .
T Consensus 10 kLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s 72 (172)
T 1wy6_A 10 KLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------D 72 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------G
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------H
Confidence 34444 45678889999998888773 35666777777777777777888888888664322 2
Q ss_pred hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHH
Q 047471 452 RAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKM 531 (579)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 531 (579)
.+|+......-+-.+. .+...+...+.....+|.-++-.+++..++...|.+|+....++.+|.+.|+..+|.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3455555555444442 34556667788888999999999999998888888899999999999999999999999999
Q ss_pred HHhCCCC
Q 047471 532 LKDSGLK 538 (579)
Q Consensus 532 ~~~~~~~ 538 (579)
.-++|++
T Consensus 151 AC~kG~k 157 (172)
T 1wy6_A 151 ACKKGEK 157 (172)
T ss_dssp HHHTTCH
T ss_pred HHHhhhH
Confidence 9999875
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.39 E-value=0.00016 Score=53.71 Aligned_cols=79 Identities=15% Similarity=0.008 Sum_probs=56.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCCh
Q 047471 446 LIDLLGRAGKLLEAEEYTKKF-PLGQ-DPI-VLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMW 522 (579)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 522 (579)
....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677788888888888775 3334 456 77777888888899999999999999999888776632 445
Q ss_pred HHHHHHHHHH
Q 047471 523 GDVAGARKML 532 (579)
Q Consensus 523 ~~A~~~~~~~ 532 (579)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.32 E-value=0.00042 Score=51.30 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=54.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-cHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTS-PYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 455678899999999999999999999999 999999999999999999999999987643
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.0063 Score=56.28 Aligned_cols=69 Identities=12% Similarity=-0.093 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 437 SPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
+.+...+..+.-.+...|++++|...++++ ...|+...+..+...+...|+.++|.+.+++++.++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 344455555554455556666666655554 233454444444555555566666666666666666553
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.16 E-value=0.0017 Score=48.18 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 047471 369 VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEK 432 (579)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 432 (579)
...+..+..+|...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455556666666666666666666666632 11344556666666666666666666666654
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0017 Score=62.67 Aligned_cols=93 Identities=10% Similarity=-0.062 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHHHHhHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCh-hhHHHHH
Q 047471 416 HAGLVKEGEAYFNSMEKTY--GISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKF---------PLGQDP-IVLGTLL 479 (579)
Q Consensus 416 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 479 (579)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|..++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777776665531 11222 356677777777777877777777664 123333 4577888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCCcc
Q 047471 480 SACRLRRDVVIGERLAKQLFH-----LQPTTTSP 508 (579)
Q Consensus 480 ~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~ 508 (579)
..|..+|++++|+.+++++++ ++|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 888889999999999888887 55776644
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0066 Score=58.60 Aligned_cols=100 Identities=9% Similarity=-0.061 Sum_probs=69.9
Q ss_pred HHHHhccCCHHHHHHHHHHhHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCh-hh
Q 047471 411 LTACNHAGLVKEGEAYFNSMEKTY--GISPD----IEHFTCLIDLLGRAGKLLEAEEYTKKF---------PLGQDP-IV 474 (579)
Q Consensus 411 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 474 (579)
+..+.+.|++++|+..+++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556778888888887776531 12222 356777888888888888888877764 123332 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCccHH
Q 047471 475 LGTLLSACRLRRDVVIGERLAKQLFH-----LQPTTTSPYV 510 (579)
Q Consensus 475 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~ 510 (579)
++.|...|..+|++++|+.+++++++ ++|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 77888889999999999999999887 5677765443
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.87 E-value=0.01 Score=54.82 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=58.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 469 GQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
+.++.++..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++.....+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 346777877777777789999999999999999974 66778899999999999999999999877644
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.81 E-value=0.0036 Score=55.37 Aligned_cols=85 Identities=8% Similarity=-0.049 Sum_probs=57.8
Q ss_pred HHHHHHHhC-CCCCC---hhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CccHHHHHHHHHcC-CChHHHH
Q 047471 458 EAEEYTKKF-PLGQD---PIVLGTLLSACRL-----RRDVVIGERLAKQLFHLQPTT-TSPYVLLSNLYASD-GMWGDVA 526 (579)
Q Consensus 458 ~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~ 526 (579)
.|...+++. ...|+ ...+..+...|.. .|+.++|.+.|+++++++|+. ..++..+++.+++. |+.++|.
T Consensus 181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 344444443 33444 3456666666666 478888888888888888864 88888888888774 8888888
Q ss_pred HHHHHHHhCCCCCCCC
Q 047471 527 GARKMLKDSGLKKEPS 542 (579)
Q Consensus 527 ~~~~~~~~~~~~~~~~ 542 (579)
+++++..+.++...|+
T Consensus 261 ~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 261 EALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHCCGGGCSS
T ss_pred HHHHHHHcCCCCCCCC
Confidence 8888887766554344
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.005 Score=48.75 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--ChhhHHHHHHHHHhcCCHHHHH
Q 047471 420 VKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG---KLLEAEEYTKKF-PLG-Q--DPIVLGTLLSACRLRRDVVIGE 492 (579)
Q Consensus 420 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~A~ 492 (579)
...+.+-|.+.... + +++..+...+..++++.+ +.+++..+++.. ... | ....+-.+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34455555555442 2 356666666777777766 455677766665 222 4 3455666777889999999999
Q ss_pred HHHHHHHhcCCCCCcc
Q 047471 493 RLAKQLFHLQPTTTSP 508 (579)
Q Consensus 493 ~~~~~~~~~~p~~~~~ 508 (579)
++++.+++.+|+|...
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999987543
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.74 E-value=0.015 Score=42.13 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHH
Q 047471 437 SPDIEHFTCLIDLLGRAGK---LLEAEEYTKKF-PLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVL 511 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 511 (579)
+.++..+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4566777777777765544 68888888876 3445 5567777777888899999999999999999988 433444
Q ss_pred HHH
Q 047471 512 LSN 514 (579)
Q Consensus 512 l~~ 514 (579)
+..
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.65 E-value=0.01 Score=44.18 Aligned_cols=73 Identities=19% Similarity=0.077 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKFP---------LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
..-+..|+..+.+.|++..|..+++... ..+...++..+..++.+.|+++.|...++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3344455666666666666666665531 1234567788888899999999999999999999999876644
Q ss_pred HH
Q 047471 511 LL 512 (579)
Q Consensus 511 ~l 512 (579)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.053 Score=57.63 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=97.6
Q ss_pred HHHHhCCChHHHHH-HHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCC
Q 047471 275 AACSHCADYEKGLS-VFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGL 353 (579)
Q Consensus 275 ~~~~~~~~~~~a~~-~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 353 (579)
......+++++|.+ ++..+ |+......++..+.+.|.++.|.++.+.. ..-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCC
Confidence 34455677777765 44221 11222356666677777777777655311 112344567899
Q ss_pred hHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 354 ISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 354 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999998887763 457889999999999999999999987754 334444455566766655555544432
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047471 434 YGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFP 467 (579)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (579)
| .++....+|.+.|++++|.+++.++.
T Consensus 737 -~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 737 -G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 13334455666777777777666653
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.59 E-value=0.12 Score=54.97 Aligned_cols=102 Identities=13% Similarity=0.112 Sum_probs=67.5
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHH
Q 047471 244 ALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGK 323 (579)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (579)
......|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHH
Confidence 34566788888888877664 557889999999999999999999988742 334444455566766666
Q ss_pred HHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHc
Q 047471 324 QIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNE 363 (579)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 363 (579)
.+.+.....| -++....+|.+.|++++|++++.+
T Consensus 728 ~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 728 TLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555554443 123344456666777776665544
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.50 E-value=0.0046 Score=48.94 Aligned_cols=68 Identities=9% Similarity=-0.099 Sum_probs=60.6
Q ss_pred CCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 469 GQDPIVLGTLLSACRLRR---DVVIGERLAKQLFHLQ-P-TTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
.++..+...+.+++++.+ +.++++.+++.+++.+ | .+...++.|+-+|.+.|++++|+++++.+.+..
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 468888999999999988 6779999999999998 7 567899999999999999999999999997653
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.02 E-value=0.35 Score=36.86 Aligned_cols=140 Identities=7% Similarity=0.001 Sum_probs=89.1
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChHHHHHHHHHHHHc-cCCCCcchHhHHHHHHHhcCChH
Q 047471 277 CSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQHGKQIHAHLIRM-RLNQDVGVGNALVNMYAKCGLIS 355 (579)
Q Consensus 277 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 355 (579)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. ++.+-. -...++.+|.+.+.
T Consensus 17 ~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~-- 89 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT-- 89 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC--
T ss_pred HHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcc--
Confidence 34457777777777777654 34455666665555555555555555544332 111111 11345566666553
Q ss_pred HHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhC
Q 047471 356 CSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYG 435 (579)
Q Consensus 356 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 435 (579)
+.......++.+...|.-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ |
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G 155 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-G 155 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-h
Confidence 3344556677788888888888888885443 5778888888888899999999999988888876 6
Q ss_pred CC
Q 047471 436 IS 437 (579)
Q Consensus 436 ~~ 437 (579)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.51 Score=38.32 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=49.0
Q ss_pred HHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047471 348 YAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYF 427 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 427 (579)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34455566555555544 3344566666666666666666666655433 223333344445554444333
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 428 NSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
+....+ | -++.-...+.-.|+++++.+++.+.
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 333221 1 1233334444555555555555554
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.96 E-value=0.019 Score=42.66 Aligned_cols=64 Identities=16% Similarity=-0.083 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 472 PIVLGTLLSACRLRRDVVIGERLAKQLFHLQ-------PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
......+...+...|++..|...++++++.. +..+.++..|+.++.+.|++++|..++++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445577888899999999999999999853 234567899999999999999999999998764
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.85 E-value=0.098 Score=39.73 Aligned_cols=91 Identities=12% Similarity=-0.005 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--ChhhHHHHHHHHHhcCCHHH
Q 047471 418 GLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLE---AEEYTKKF-PLG-Q--DPIVLGTLLSACRLRRDVVI 490 (579)
Q Consensus 418 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 490 (579)
.....+.+-|.+.... +. ++..+--.+..++.+..+... ++.+++.+ ... | .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445555556555543 33 677777777788888776665 66777775 222 3 22445566677889999999
Q ss_pred HHHHHHHHHhcCCCCCccHH
Q 047471 491 GERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 491 A~~~~~~~~~~~p~~~~~~~ 510 (579)
|.++++.+++.+|+|..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999865443
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.66 E-value=0.031 Score=49.48 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhC-CCCC--ChhhHHHHHHHHHh-cCC
Q 047471 420 VKEGEAYFNSMEKTYGISPD---IEHFTCLIDLLGR-----AGKLLEAEEYTKKF-PLGQ--DPIVLGTLLSACRL-RRD 487 (579)
Q Consensus 420 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~~~ 487 (579)
...|...+++.++. .|+ ...|..+...|.+ -|+.++|.+.|++. .+.| +..+...+...++. .|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45666666666653 455 4567777777777 37888888888876 4556 36667777777766 488
Q ss_pred HHHHHHHHHHHHhcCCCC-CccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 488 VVIGERLAKQLFHLQPTT-TSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 488 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.+++.+.+++++...|.. |. ..+.+. +.-.+|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~--~~lan~----~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH--NKLLVI----LSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS--CHHHHH----HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC--hhHHHH----HHHHHHHHHHHHhH
Confidence 888888888888887763 33 122332 33446666665543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.94 Score=36.80 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=93.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 047471 376 IAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGK 455 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (579)
.....+.|+++.|.++.+++ .+...|..|.......|+++-|...|.+... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34556789999999998765 3678899999999999999999999998853 5566777788888
Q ss_pred hHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHH
Q 047471 456 LLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKML 532 (579)
Q Consensus 456 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 532 (579)
.+...++-+....+. -++.....+...|+++++.+++.+.-+ +..-......-|-.+.|.++.+.+
T Consensus 76 ~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 877766544432111 245555667789999999999876332 222233333357777788888766
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.29 E-value=3.5 Score=43.35 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=16.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH
Q 047471 103 FASAISACAGIQSLVKGQQIHAYSL 127 (579)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~ 127 (579)
|..+++.+.+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666667777777666654
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.99 E-value=0.077 Score=41.34 Aligned_cols=103 Identities=10% Similarity=0.076 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHhccCCH------HHHHHHHHHhHHHhCCCCChh-HHHHHHHH------HHhcCChHHHHHHHHhCC--
Q 047471 403 DSVTFIGLLTACNHAGLV------KEGEAYFNSMEKTYGISPDIE-HFTCLIDL------LGRAGKLLEAEEYTKKFP-- 467 (579)
Q Consensus 403 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~-- 467 (579)
|..+|-..+....+.|+. ++.+++|+++.. .++|+.. .|...+.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 677777777777777888 888889988887 5666531 12222221 234578888888888762
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 468 LGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 468 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
.+.-...|......-.++|+...|.+++.+++.+.|....
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 1112556666666677788888888888888888877543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.44 E-value=0.18 Score=51.69 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
-...|...|+++.|+++.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34557778999999999999999999999999999999999999999999999885
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.13 E-value=0.57 Score=36.58 Aligned_cols=97 Identities=10% Similarity=0.170 Sum_probs=53.2
Q ss_pred CChhhHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHHH----HHHH-HH--HHhccCCHHHHHHHHHHhHHH
Q 047471 367 RNVVSWNTIIAAHANHRLG------GSALKLFEQMKATGIKPDSVT----FIGL-LT--ACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~l-l~--~~~~~~~~~~a~~~~~~~~~~ 433 (579)
.|..+|-..+...-+.|+. ++..++|++.... ++|+... |..+ +. .+...+|+++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666766 6666677766664 5554211 1100 00 122336667777777776653
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 434 YGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
+-.- ...|-....--.+.|+...|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 444544555555677777777776664
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.03 E-value=5.7 Score=40.02 Aligned_cols=115 Identities=8% Similarity=-0.003 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 047471 383 RLGGSALKLFEQMKATG-IKPDSV--TFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEA 459 (579)
Q Consensus 383 ~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (579)
.+.+.|...+....+.+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888876533 222211 2223333344455355666666665432 23443444455555677899999
Q ss_pred HHHHHhCCCCC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047471 460 EEYTKKFPLGQ-D-PIVLGTLLSACRLRRDVVIGERLAKQLFH 500 (579)
Q Consensus 460 ~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 500 (579)
...|+.|+..+ + ..-.-=+..+....|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998886433 2 22223344456677888888888888875
No 239
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.97 E-value=2.6 Score=38.02 Aligned_cols=128 Identities=14% Similarity=0.141 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHH----HHHHHHCCCCCCcccHHHHHHHhc
Q 047471 137 VGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEV----FKLMLRQGLLPDRFSFAGGLEICS 212 (579)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 212 (579)
.|.++..-|.+.+++++|++++... ...+.+.|+...|-++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456677788899999999886432 3455666776665554 455556778888877777777665
Q ss_pred ccCccc-chhHHHHHHHHh----C--CCCChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHH
Q 047471 213 VSNDLR-KGMILHCLTVKC----K--LESNPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIA 275 (579)
Q Consensus 213 ~~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 275 (579)
....-+ .-..+...++++ | ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 543222 122333334332 2 22356677777888888888888887765332223444444443
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.58 E-value=0.1 Score=39.67 Aligned_cols=67 Identities=9% Similarity=-0.163 Sum_probs=56.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 469 GQDPIVLGTLLSACRLRRDVVI---GERLAKQLFHLQ-P-TTTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.|+..+-..+.+++.+.++... ++.+++.+.+.+ | ......+.|+-++.+.|++++|+++++.+.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4778888888999988776555 899999999877 5 45677889999999999999999999999764
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.15 E-value=4.9 Score=36.53 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHH----HHHHHCCCCCCcccHHHHHHHhc
Q 047471 137 VGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVF----KLMLRQGLLPDRFSFAGGLEICS 212 (579)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~ 212 (579)
+|.++..-|.+.+++++|++++-.. ...+.+.|+...+-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456667788999999999886432 34556667766655544 55566788888877777777766
Q ss_pred ccCcccc-hhHHHHHHH----HhC--CCCChhHHhHHHHHHHhcCChhHHHHHHH
Q 047471 213 VSNDLRK-GMILHCLTV----KCK--LESNPFVGNTIMALYSKFNLIGEAEKAFR 260 (579)
Q Consensus 213 ~~~~~~~-a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 260 (579)
....-+- -..+.+.++ +.| ..-|+.....+...|.+.+++.+|+..|-
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 5543221 122222222 223 23455666677777777777777777763
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.78 E-value=0.96 Score=35.00 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 437 SPDIEHFTCLIDLLGRAGKLL---EAEEYTKKF-PLGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
.|+..+--.+..++.+..+.+ +++.+++.+ ...| .....-.+.-++.+.|++++|.++.+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 577777777788888877554 455566665 2234 2344556666788899999999999999999998743
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.76 E-value=11 Score=39.68 Aligned_cols=249 Identities=8% Similarity=-0.089 Sum_probs=120.3
Q ss_pred HHhcCChhHHHHHHHhcCCC----Ccc--hHHHHHHHHHhCCChHHHHHHHHHhhhCCC-C-----CCCHHHHHHHHHHH
Q 047471 246 YSKFNLIGEAEKAFRLIEEK----DLI--SWNTFIAACSHCADYEKGLSVFKEMSNDHG-V-----RPDDFTFASILAAC 313 (579)
Q Consensus 246 ~~~~~~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~-----~p~~~~~~~ll~~~ 313 (579)
....|+.+++..++...... +.. .-..+.-+....|..+++..++........ + .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566777777777665531 111 222333445566665667777766554301 0 01111112222222
Q ss_pred --hCcCChHHHHHHHHHHHHccCCCCc--chHhHHHHHHHhcCChHHHHHHHHccCC-CChhhH--HHHHHHHHhcCChH
Q 047471 314 --AGLASVQHGKQIHAHLIRMRLNQDV--GVGNALVNMYAKCGLISCSYKLFNEMLH-RNVVSW--NTIIAAHANHRLGG 386 (579)
Q Consensus 314 --~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~--~~l~~~~~~~~~~~ 386 (579)
...++- ++...+..+....- +.. ..--++...|.-.|+.+....++..+.+ .+.... ..+.-++...|+.+
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 333333 33444444433211 111 1111233334456776666666665532 122222 23333455678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047471 387 SALKLFEQMKATGIKPDSVTFI---GLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYT 463 (579)
Q Consensus 387 ~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (579)
.+..+++.+... ..|. .-|. .+.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888877763 1222 2222 2334577888887777788887762 2233333333333444567766666666
Q ss_pred HhCCCCCChhhHHHHHHH--HHhcCCH-HHHHHHHHHHHh
Q 047471 464 KKFPLGQDPIVLGTLLSA--CRLRRDV-VIGERLAKQLFH 500 (579)
Q Consensus 464 ~~~~~~p~~~~~~~l~~~--~~~~~~~-~~A~~~~~~~~~ 500 (579)
+.+....|+.+-.....+ ....|+. .++...+..+..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 655323344443333333 3333433 566667666653
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.86 E-value=0.27 Score=39.25 Aligned_cols=113 Identities=12% Similarity=-0.015 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCh
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDI-------EHFTCLIDLLGRAGKLLEAEEYTKKF-------PLGQDP 472 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~ 472 (579)
+..-+..+...|.++.|+-+.+.+....+.+|+. .++..+.+++...|++.+|...|++. ...+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444555667777777777766655443333442 24455666777777777777766653 111111
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
.+ .+ .. ...... -..+ +.+.+..+.++.+|.+.|++.+|+.+++.+.
T Consensus 103 ~~--~~-~~---~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RP--ST-GN---SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cc--cc-cc---cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 00 00 00 000000 0001 2223567789999999999999999998653
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.84 E-value=0.25 Score=37.66 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=41.1
Q ss_pred CChhHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 438 PDIEHFTCLIDLLGRAGKLL---EAEEYTKKF-PLGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
|+..+--.+..++++..+.+ +++.+++.+ ...| ....+-.+.-++.+.|++++|.++.+.+++.+|+|..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 55555555666666665443 345555554 2223 2344555556677777777777777777777777643
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.66 E-value=2.5 Score=40.78 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=62.9
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCC----C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--HHH
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLH----R-----NVVSWNTIIAAHANHRLGGSALKLFEQMKA----TGIKPD--SVT 406 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~ 406 (579)
..|...|...|++.+|.+++.++.. . -+..+...+..|...+++.+|..++++... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4577778888888888888887721 1 123556667778888888888888887642 222222 234
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHHhC
Q 047471 407 FIGLLTACNHAGLVKEGEAYFNSMEKTYG 435 (579)
Q Consensus 407 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 435 (579)
+...+..+...+++.+|-..|.++...+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 55566667777888888888877766433
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.46 E-value=2 Score=33.27 Aligned_cols=67 Identities=7% Similarity=-0.062 Sum_probs=36.2
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCccHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 469 GQDPIVLGTLLSACRLRRD---VVIGERLAKQLFHLQPT-TTSPYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 469 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
.|++.+-..+.+++.+..+ ..+++.+++.+.+..|. .....+.|+-.+.+.|++++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455555555555555432 34555566666655553 2334455555666666666666666655543
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.43 E-value=0.71 Score=35.20 Aligned_cols=71 Identities=11% Similarity=0.001 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCh
Q 047471 401 KPDSVTFIGLLTACNHAG---LVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF-PLGQDP 472 (579)
Q Consensus 401 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 472 (579)
.|+..|--.+..++.+.. +..+++.+++++.+. +-.-....+..|.-++.+.|++++|.++.+.+ ...|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 344444333333444333 334566666666553 21112344445555666666666666666664 445543
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.35 E-value=1.4 Score=35.17 Aligned_cols=31 Identities=16% Similarity=0.003 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 047471 439 DIEHFTCLIDLLGRAGKLLEAEEYTKKFPLG 469 (579)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (579)
+...-..+..+|.+.|++++|+.+++.++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 3444455778888888888888888888633
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.95 E-value=8.1 Score=42.55 Aligned_cols=164 Identities=9% Similarity=-0.006 Sum_probs=96.8
Q ss_pred hHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCCh
Q 047471 240 NTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASV 319 (579)
Q Consensus 240 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 319 (579)
..++..+...+..+-+.++...... ++...-.+..++...|++++|.+.|.+... |+..+.... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------SSH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------hhh
Confidence 3455666677777777766554443 444444556778888999999999887632 332221100 000
Q ss_pred HHHHHHHHHHHHcc-C-CCCcchHhHHHHHHHhcCChHHHHHHHHccC----CCCh----hhHHHHHHHHHhcCChHHHH
Q 047471 320 QHGKQIHAHLIRMR-L-NQDVGVGNALVNMYAKCGLISCSYKLFNEML----HRNV----VSWNTIIAAHANHRLGGSAL 389 (579)
Q Consensus 320 ~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~~~a~ 389 (579)
.. +..+.... . ..-..-|.-++..+.+.+.++.+.++-+... ..+. ..|..+.+.+...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 11111110 0 1122346667778888888888777665441 1221 25788889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047471 390 KLFEQMKATGIKPDSVTFIGLLTACNHAGLVKE 422 (579)
Q Consensus 390 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 422 (579)
..+-.+..... -...+..++..++..|..+.
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 98887776433 34566667776666665443
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.79 E-value=0.56 Score=44.47 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCCCCC
Q 047471 476 GTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD-----SGLKKEPS 542 (579)
Q Consensus 476 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 542 (579)
..++..+...|++.++...++.++..+|-+...+..++.+|.+.|+..+|++.|+.+.+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34555566677777777777777777777777777777777777777777777776643 35555444
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.74 E-value=1.8 Score=30.92 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=45.0
Q ss_pred hHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 456 LLEAEEYTKK---FPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 456 ~~~A~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
.-+..+-++. +...|++.+..+.+.+|.+.+|+..|+++++-+...-.+...+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3344444444 4578999999999999999999999999999988766554566766654
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.48 E-value=3.4 Score=29.35 Aligned_cols=88 Identities=16% Similarity=-0.025 Sum_probs=62.0
Q ss_pred ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHH
Q 047471 112 GIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKL 191 (579)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 191 (579)
.....++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|- -.+.|..+++..-+..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 34466778778777776554 2222223334567899999999999999999999987664 4578888888888888
Q ss_pred HHHCCCCCCcccH
Q 047471 192 MLRQGLLPDRFSF 204 (579)
Q Consensus 192 m~~~g~~p~~~~~ 204 (579)
+..+| .|....|
T Consensus 94 la~sg-~p~~q~F 105 (115)
T 2uwj_G 94 LGGSS-DPALADF 105 (115)
T ss_dssp HHTCS-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 87765 3444444
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.35 E-value=2.4 Score=30.34 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 384 LGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 384 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
|.-+..+-++.+....+-|++......+.+|.+.+++..|.++++.+..+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 3446666777777778899999999999999999999999999999887533 33456766664
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.15 E-value=17 Score=32.99 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=100.2
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKL----FEQMKATGIKPDSVTFIGLLTACN 415 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 415 (579)
+|.++..-|.+.+++++|++++-.- ...+.+.|+...+.++ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456677788999999998876542 2335556666554443 455666788888888777777766
Q ss_pred ccCCHH-HHHHHHHHhHH---HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 047471 416 HAGLVK-EGEAYFNSMEK---TYG--ISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVV 489 (579)
Q Consensus 416 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 489 (579)
....-+ .=..+.+++++ ++| -.-|+.....+...|.+.+++.+|...|-. ...+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcC--
Confidence 544311 11222222221 113 223567777888999999999999887742 323333455444444333322
Q ss_pred HHHHHHHHHHhcCCCCCccHH-HHHHHHHcCCChHHHHHHHHHHHh
Q 047471 490 IGERLAKQLFHLQPTTTSPYV-LLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 490 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
|.....|. ..+--|...|+...|...++.+.+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22223222 334466778899999888777764
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.89 E-value=3.7 Score=29.23 Aligned_cols=88 Identities=18% Similarity=0.038 Sum_probs=60.4
Q ss_pred ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHH
Q 047471 112 GIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKL 191 (579)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 191 (579)
.....++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|..+++..-+..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34466778777777776554 22222223345678999999999999999999999876644 466777777777777
Q ss_pred HHHCCCCCCcccH
Q 047471 192 MLRQGLLPDRFSF 204 (579)
Q Consensus 192 m~~~g~~p~~~~~ 204 (579)
+..+| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 76665 3443334
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.22 E-value=4.4 Score=41.75 Aligned_cols=51 Identities=16% Similarity=-0.042 Sum_probs=42.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSM 430 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 430 (579)
-+...|+++-|+++-++.... .|+ -.+|..|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 356788999999999888884 554 778999999999999999998888877
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.11 E-value=14 Score=30.91 Aligned_cols=91 Identities=11% Similarity=-0.030 Sum_probs=37.4
Q ss_pred CcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047471 337 DVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNH 416 (579)
Q Consensus 337 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 416 (579)
+..+-...+.++.+.++.+....+.+-+..++...-...+.++.+.|+. ++...+.++.+ .++...-...+.++..
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333344444444444433333333333344444444445555544443 23333333332 2344444444444444
Q ss_pred cCCHHHHHHHHHHhHH
Q 047471 417 AGLVKEGEAYFNSMEK 432 (579)
Q Consensus 417 ~~~~~~a~~~~~~~~~ 432 (579)
.+. .++...+..+.+
T Consensus 170 ~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 170 IGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HCS-HHHHHHHHHHHH
T ss_pred hCc-hhHHHHHHHHHh
Confidence 443 334444444443
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.87 E-value=7.4 Score=36.69 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----HhCCCCChhHH
Q 047471 373 NTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEK----TYGISPDIEHF 443 (579)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 443 (579)
..++..+...|+++++...+..+.... +-+...+..++.++...|+..+|++.|+.+.+ ..|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345666777888888888888877642 34677888888888888888888888877654 24777876554
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.54 E-value=1.6 Score=38.14 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=43.3
Q ss_pred HHHHhcCChHHHHHHHHh-CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 047471 448 DLLGRAGKLLEAEEYTKK-FPLGQ-DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTT 505 (579)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 505 (579)
..+.+.|++++|++.... ++..| |...-..++..+|-.|++++|.+-++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345677888888876554 44455 66666778888888888888888888888888874
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.47 E-value=9 Score=27.32 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=58.2
Q ss_pred hcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHc
Q 047471 15 TKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQM 94 (579)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 94 (579)
.-..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+...-||...|-.|-. .+.|-.+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3467888888888888764 33333344567788999999999999999999999887754 5677777777777666
Q ss_pred ccC
Q 047471 95 HLL 97 (579)
Q Consensus 95 ~~~ 97 (579)
..+
T Consensus 96 a~s 98 (116)
T 2p58_C 96 ARS 98 (116)
T ss_dssp TTC
T ss_pred HhC
Confidence 544
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.40 E-value=8.5 Score=27.40 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=58.6
Q ss_pred hcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHc
Q 047471 15 TKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQM 94 (579)
Q Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 94 (579)
.-..++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+...-||..+|-.|- -.+.|-.+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 3467889888888888764 3333334456778899999999999999999999987774 35778887777777666
Q ss_pred ccC
Q 047471 95 HLL 97 (579)
Q Consensus 95 ~~~ 97 (579)
..+
T Consensus 95 a~s 97 (115)
T 2uwj_G 95 GGS 97 (115)
T ss_dssp HTC
T ss_pred HhC
Confidence 544
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.25 E-value=8.5 Score=29.31 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=41.7
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHH
Q 047471 465 KFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSN 514 (579)
Q Consensus 465 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 514 (579)
.+...|++.+..+.+.+|.+.+|+..|+++++-+...-.+...+|..+++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34678999999999999999999999999999988766554666776655
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.33 E-value=22 Score=31.00 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=70.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChh----HHHHHHHHHHhc
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIE----HFTCLIDLLGRA 453 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 453 (579)
...+.|+.++++.....-++.. +-|...-..++..+|-.|++++|.+-++-..+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4566777888888777777652 335666666777777888888888877777653 34432 22333322
Q ss_pred CChHHHHH-HHHhC--C--CCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCccHH
Q 047471 454 GKLLEAEE-YTKKF--P--LGQDPIVLGTLLSAC--RLRRDVVIGERLAKQLFHLQPTTTSPYV 510 (579)
Q Consensus 454 g~~~~A~~-~~~~~--~--~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 510 (579)
+...+ +|.-- + ....+.-...++.+. ...|+.++|.++-.++.+.-|..+....
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 11221 22221 1 111222333444443 3468888888888888887777655433
No 265
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.22 E-value=5.2 Score=30.41 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 047471 385 GGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLID 448 (579)
Q Consensus 385 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 448 (579)
.-+..+-++.+...++-|++......+.+|.+.+|+..|.++|+.+..+. .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33566666777777889999999999999999999999999999998753 344556776664
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.70 E-value=35 Score=32.01 Aligned_cols=33 Identities=6% Similarity=-0.095 Sum_probs=23.4
Q ss_pred CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 047471 503 PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGL 537 (579)
Q Consensus 503 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 537 (579)
|-.......++..+.- ..+++...+-+|...|.
T Consensus 313 pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 313 PYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp TCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred hhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 5555566666666543 67889999999987765
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.53 E-value=30 Score=31.16 Aligned_cols=169 Identities=14% Similarity=0.085 Sum_probs=97.5
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHh
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALK----LFEQMKATGIKPDSVTFIGLLTACN 415 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~ 415 (579)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|.+ +++...+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3456667788888888888876542 233555676655544 4555666788888887777777665
Q ss_pred ccCCHH-HHHHHHHHhHH---HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc---C
Q 047471 416 HAGLVK-EGEAYFNSMEK---TYG--ISPDIEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLR---R 486 (579)
Q Consensus 416 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~ 486 (579)
.-..-+ .=.++++++++ +.| -.-++.....+...|.+.|++.+|...|-.-. ..++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCC
Confidence 422111 11222233321 112 12366777888888999999999888665321 11344444444443333 3
Q ss_pred CHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHh
Q 047471 487 DVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKD 534 (579)
Q Consensus 487 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 534 (579)
...++--+ ....+--|...|+...|..+++...+
T Consensus 183 ~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33332221 11223356678899999998887754
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.37 E-value=21 Score=34.05 Aligned_cols=94 Identities=15% Similarity=-0.033 Sum_probs=52.0
Q ss_pred hHhHHHHHHHhcCChHHHHHHHHccCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHH--H
Q 047471 340 VGNALVNMYAKCGLISCSYKLFNEMLH------RNVVSWNTIIAAHANHRLGGSALKLFEQMKA---TGIKPDSVTF--I 408 (579)
Q Consensus 340 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~--~ 408 (579)
+...+...|.+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+++... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566666677777777777666621 2233455566666677777777777776643 2222222110 0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHH
Q 047471 409 GLLTACNHAGLVKEGEAYFNSMEKT 433 (579)
Q Consensus 409 ~ll~~~~~~~~~~~a~~~~~~~~~~ 433 (579)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234566777777777666554
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.70 E-value=8.2 Score=42.51 Aligned_cols=61 Identities=8% Similarity=-0.125 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----cHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 047471 475 LGTLLSACRLRRDVVIGERLAKQLFHLQPTTTS-----PYVLLSNLYASDGMWGDVAGARKMLKDS 535 (579)
Q Consensus 475 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 535 (579)
|..++..+-++|.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 455556666677777777777777764432221 4566667777777777777666555443
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.17 E-value=21 Score=29.55 Aligned_cols=29 Identities=3% Similarity=-0.168 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 047471 473 IVLGTLLSACRLRRDVVIGERLAKQLFHL 501 (579)
Q Consensus 473 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 501 (579)
..|......+-..|++++|.++|+..++.
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 33444444444555555555555555553
No 271
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.80 E-value=61 Score=31.05 Aligned_cols=95 Identities=9% Similarity=0.088 Sum_probs=69.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHHh-CCCCC----hh
Q 047471 372 WNTIIAAHANHRLGGSALKLFEQMKA--TGIKPD---SVTFIGLLTACNHAGLVKEGEAYFNSMEKTY-GISPD----IE 441 (579)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~ 441 (579)
...|...+...|++.+|..++.++.. .|..+. ...+...++.|...+++..|..++.++.... ...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45678889999999999999999864 232222 2356667778999999999999999875321 22222 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 442 HFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
.+...+..+...+++.+|...|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4566777888899999998877665
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.81 E-value=16 Score=35.02 Aligned_cols=96 Identities=9% Similarity=-0.082 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHH--
Q 047471 371 SWNTIIAAHANHRLGGSALKLFEQMKATGIKP--DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCL-- 446 (579)
Q Consensus 371 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 446 (579)
+...+..-|.+.|+++.|.+.+.++...-..+ -...+..+++.+...+++..+...+.++.....-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56678889999999999999999998743333 35677788889999999999999999987653334444333222
Q ss_pred --HHHHHhcCChHHHHHHHHhC
Q 047471 447 --IDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 447 --~~~~~~~g~~~~A~~~~~~~ 466 (579)
+..+...+++.+|...|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 22344678999988876553
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.44 E-value=80 Score=31.77 Aligned_cols=229 Identities=10% Similarity=-0.073 Sum_probs=124.5
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHH--HHHHHHHHHhCcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHH
Q 047471 281 ADYEKGLSVFKEMSNDHGVRPDDF--TFASILAACAGLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSY 358 (579)
Q Consensus 281 ~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 358 (579)
.+.+.|...+....+.....+... ....+.......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 378999999988865422322221 1222333334455355566666654432 233333444555556789999999
Q ss_pred HHHHccCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhC
Q 047471 359 KLFNEMLHRN---VVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYG 435 (579)
Q Consensus 359 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 435 (579)
..|+.|.... .....=+..++...|+.++|..+|+++... . +|..++.+ .+.|..-.. ... .
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~~-----~~~---~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYEL-----KID---K 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCCC-----CCC---C
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCCC-----CCC---C
Confidence 9999996532 222334556778889999999999998752 1 33333322 222211000 000 0
Q ss_pred CCC-Chh-----HHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC
Q 047471 436 ISP-DIE-----HFTCLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP---TTT 506 (579)
Q Consensus 436 ~~~-~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~ 506 (579)
..+ ... .-..-+..+...|....|...+..+....++.....+.......|..+.++....+....+. .-|
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 001 000 11123456778899999988777653234444444555555667888877765544322220 113
Q ss_pred ccHHHHHHHHHcCCChHHHH
Q 047471 507 SPYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 507 ~~~~~l~~~~~~~g~~~~A~ 526 (579)
..|..++.-+.+.-.++.++
T Consensus 451 ~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHH
T ss_pred cchHHHHHHHHHHcCCCHHH
Confidence 45666666666665555543
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.02 E-value=50 Score=28.76 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=42.5
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhcCCCCch---hHHHHHHHHHccCChhHHHHHhcccCCC---CcccHHHHHHHHHh
Q 047471 7 SLLHHCSKTKALQQGISLHAAVLKMGIQPDVI---VSNHVLNLYAKCGKMILARKVFDEMSER---NLVSWSAMISGHHQ 80 (579)
Q Consensus 7 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 80 (579)
+.+...++.|+++ +++.+++.|..++.. .-.+.+...+..|+.+-+.-+++.-..+ +....+.|. ..+.
T Consensus 7 ~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL-LAAI 81 (285)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHH
T ss_pred hHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHH
Confidence 4455566677775 444555566544432 1124566667778877777777654332 222233332 3344
Q ss_pred cCChHHHHHHHH
Q 047471 81 AGEHLLALEFFS 92 (579)
Q Consensus 81 ~g~~~~a~~~~~ 92 (579)
.|+.+-+..+++
T Consensus 82 ~~~~~~v~~Ll~ 93 (285)
T 1wdy_A 82 AGSVKLLKLFLS 93 (285)
T ss_dssp HTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 566554444444
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=69.49 E-value=51 Score=27.85 Aligned_cols=87 Identities=11% Similarity=-0.027 Sum_probs=51.3
Q ss_pred HHHHhhhhcchhHHHHHHHHHHHhcCCCCchh--HHHHHHHHHccCChhHHHHHhcccCCC---CcccHHHHHHHHHhcC
Q 047471 8 LLHHCSKTKALQQGISLHAAVLKMGIQPDVIV--SNHVLNLYAKCGKMILARKVFDEMSER---NLVSWSAMISGHHQAG 82 (579)
Q Consensus 8 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 82 (579)
.+...+..|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ +...++.+ ...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA-HLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcC
Confidence 45556677888888888887777775554331 223456666778877777776654332 22223333 3344566
Q ss_pred ChHHHHHHHHHcc
Q 047471 83 EHLLALEFFSQMH 95 (579)
Q Consensus 83 ~~~~a~~~~~~~~ 95 (579)
+.+-+..+++...
T Consensus 91 ~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 91 SPTCLRALLDSAA 103 (241)
T ss_dssp CHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCC
Confidence 7666666666543
No 276
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=68.52 E-value=27 Score=28.59 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=41.0
Q ss_pred hHHHHHHHHhCCCCCCh--h-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHH
Q 047471 456 LLEAEEYTKKFPLGQDP--I-----VLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVA 526 (579)
Q Consensus 456 ~~~A~~~~~~~~~~p~~--~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 526 (579)
++.|+.+++.+...-+. . .-...+..|.+.|.+++|.+++++....++.+...-..|..+-.+..-+...+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 45667777776422221 1 11234456888889999999999888888777776666666655555444333
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.43 E-value=48 Score=27.18 Aligned_cols=154 Identities=12% Similarity=0.019 Sum_probs=75.7
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHHHcccCCCHhhHHHHHHHHhcc
Q 047471 34 QPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFSQMHLLPNEYIFASAISACAGI 113 (579)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~ 113 (579)
.++..+....+..+.+.|..+....+.+.+..++...-...+.++...|..+ +...+..+...++...-...+.++...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3556666666666666666544455555555566555555566666666543 333333343446666666666666666
Q ss_pred CChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhCCCcchHHHHHHHHH
Q 047471 114 QSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFEPNLVSFNALIAGFVENQQPEKGFEVFKLML 193 (579)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 193 (579)
++.+....+.. +.. .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.|. .++...+..+.
T Consensus 104 ~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 104 GDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp CCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 65433222222 221 34444545555555555554333333333333444333444444444443 23444444443
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.15 E-value=51 Score=27.32 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=81.9
Q ss_pred ChhHHhHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHh
Q 047471 235 NPFVGNTIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACA 314 (579)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 314 (579)
+..+-...+..+.+.+..+....+.+.+.+++...-...+.++...++.+ +...+..+.. .++...-...+.++.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSAAVALG 106 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 44444445555555555454555555555555555555555665555533 3333333332 245555555556666
Q ss_pred CcCChHHHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047471 315 GLASVQHGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEMLHRNVVSWNTIIAAHANHRLGGSALKLFEQ 394 (579)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 394 (579)
+.++.+....+.+ +.+ .++..+-...+.++.+.|..+....+.+-+..++...-...+.++.+.+. .++...+.+
T Consensus 107 ~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 181 (211)
T 3ltm_A 107 QIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 181 (211)
T ss_dssp HHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 5555433322222 221 45555666667777777765444444444455666666666777777665 455666666
Q ss_pred HHH
Q 047471 395 MKA 397 (579)
Q Consensus 395 m~~ 397 (579)
+.+
T Consensus 182 ~l~ 184 (211)
T 3ltm_A 182 LAE 184 (211)
T ss_dssp HHH
T ss_pred HHh
Confidence 655
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.35 E-value=40 Score=26.48 Aligned_cols=49 Identities=6% Similarity=0.071 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcC--CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 047471 491 GERLAKQLFHLQ--PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSGLKK 539 (579)
Q Consensus 491 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 539 (579)
+..+|..+...+ -..+..|...+..+...|++.+|.++++.-.+.+.+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566666666543 4445566677777777777777777777666555443
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=63.87 E-value=63 Score=29.03 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=45.7
Q ss_pred HHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 462 YTKKFPLGQDP--IVLGTLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 462 ~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
+|.....+|.. .++...+..+.+.+++..|..+.++++++.|+. ...++|.+++....+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCC
Confidence 45555566643 567777888999999999999999999999852 24556888888776543
No 281
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=61.14 E-value=73 Score=26.75 Aligned_cols=146 Identities=9% Similarity=0.028 Sum_probs=70.7
Q ss_pred HHHHhhhhcchhHHHHHHHHHHHhcCCCCchh--HHHHHHHHHccCChhHHHHHhcccCC---CCcccHHHHHHHHHhcC
Q 047471 8 LLHHCSKTKALQQGISLHAAVLKMGIQPDVIV--SNHVLNLYAKCGKMILARKVFDEMSE---RNLVSWSAMISGHHQAG 82 (579)
Q Consensus 8 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 82 (579)
.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.-+++.-.. ++....+.+ ...+..|
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCL-HLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHH-HHHHHTT
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcC
Confidence 344555667764 5556666676554321 12345666677888877777766433 222223333 3344566
Q ss_pred ChHHHHHHHHHcccC---CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHhcCChhHHHHH
Q 047471 83 EHLLALEFFSQMHLL---PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISF--VGNSLISMYMKVGYSSDALLV 157 (579)
Q Consensus 83 ~~~~a~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 157 (579)
+.+-+..+++.-... ++..-.+ .+...+..|+.+ +++.+++.|..++.. .-.+.+...+..|+.+-+..+
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 666555555543222 2221111 222333444443 444445555544321 111223334455666666666
Q ss_pred hccCCC
Q 047471 158 YGEAFE 163 (579)
Q Consensus 158 ~~~~~~ 163 (579)
++....
T Consensus 164 l~~g~~ 169 (237)
T 3b7b_A 164 LAAKCD 169 (237)
T ss_dssp HTTTCC
T ss_pred HHcCCC
Confidence 655443
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.85 E-value=68 Score=26.24 Aligned_cols=79 Identities=10% Similarity=-0.060 Sum_probs=33.3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHH
Q 047471 366 HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTC 445 (579)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 445 (579)
.++...-...+.++.+.++. .+...+..+.. .++...-...+.++...|+ .++...+..+.+. ++..+-..
T Consensus 118 d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~~ 188 (201)
T 3ltj_A 118 DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET----GTGFARKV 188 (201)
T ss_dssp CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH----CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC----CCHHHHHH
Confidence 34444444444444444432 23333333332 2344444444444444444 3344444444442 34444444
Q ss_pred HHHHHHhc
Q 047471 446 LIDLLGRA 453 (579)
Q Consensus 446 l~~~~~~~ 453 (579)
.+.++.+.
T Consensus 189 A~~aL~~l 196 (201)
T 3ltj_A 189 AVNYLETH 196 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 44444443
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.66 E-value=57 Score=25.97 Aligned_cols=45 Identities=7% Similarity=-0.004 Sum_probs=21.2
Q ss_pred HHHHHHHHhcC--CCCCccHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 047471 492 ERLAKQLFHLQ--PTTTSPYVLLSNLYASDGMWGDVAGARKMLKDSG 536 (579)
Q Consensus 492 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 536 (579)
..+|..+...+ -..+..|...+..+...|++.+|.++++.-.+.+
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33444444422 3333445555555555555555555555544443
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.97 E-value=1.1e+02 Score=26.95 Aligned_cols=50 Identities=6% Similarity=-0.029 Sum_probs=24.0
Q ss_pred HHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 047471 43 VLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALEFFS 92 (579)
Q Consensus 43 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 92 (579)
.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+..+++
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34555566777766666665332222111122333345566555444444
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.93 E-value=75 Score=24.91 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=10.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC
Q 047471 378 AHANHRLGGSALKLFEQMKATGIKP 402 (579)
Q Consensus 378 ~~~~~~~~~~a~~~~~~m~~~~~~p 402 (579)
.+...|++.+|.++|+..++.+-.|
T Consensus 110 ~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 110 HLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3334444444444444444443333
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.81 E-value=51 Score=32.06 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC----h---hHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 404 SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD----I---EHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 404 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
...++.+++.|...+.++.|..+..+.. ++.+ . .-+..+++.+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456667777777777777777776653 2211 1 11223445556677777777666553
No 287
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=53.12 E-value=38 Score=32.97 Aligned_cols=56 Identities=21% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCChHHHHHHHHHHH
Q 047471 478 LLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGMWGDVAGARKMLK 533 (579)
Q Consensus 478 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 533 (579)
|+.........+.|..+|.++..+.|.+...|+.|+.+....|+.-+|.-.+-+..
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33344445667788888888888888888888888888888888777766555443
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.93 E-value=1.1e+02 Score=25.42 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCC
Q 047471 383 RLGGSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISP 438 (579)
Q Consensus 383 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 438 (579)
+...++..+|..|...|+--. ...|......+...|++++|.++|+.-++. +-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 335678888888887776654 556666777777788888888888887776 5555
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.10 E-value=99 Score=25.82 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=4.8
Q ss_pred cCChhHHHHHhc
Q 047471 148 VGYSSDALLVYG 159 (579)
Q Consensus 148 ~g~~~~A~~~~~ 159 (579)
.|+.+-+..+++
T Consensus 119 ~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 119 FGHTSIVAYLIA 130 (240)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 344443333333
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.48 E-value=1e+02 Score=33.02 Aligned_cols=51 Identities=8% Similarity=-0.121 Sum_probs=32.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 047471 410 LLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLLEAEEYTKKF 466 (579)
Q Consensus 410 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (579)
++..|...|..+-+.++. . -.+.++..-..++.+|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666677766554432 2 33344444445677788888888888888876
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.16 E-value=93 Score=23.52 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=40.0
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLHRNV---VSWNTIIAAHANHRL--GGSALKLFEQMKATGIKPD 403 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 403 (579)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 5577788888999999999988865522 233444445554432 3567777777777665443
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.87 E-value=70 Score=27.35 Aligned_cols=22 Identities=14% Similarity=-0.059 Sum_probs=14.8
Q ss_pred HHHHHhcCChHHHHHHHHHccc
Q 047471 75 ISGHHQAGEHLLALEFFSQMHL 96 (579)
Q Consensus 75 ~~~~~~~g~~~~a~~~~~~~~~ 96 (579)
+..+....++++|++++++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4566677777777777766643
No 293
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.28 E-value=1.5e+02 Score=27.07 Aligned_cols=18 Identities=6% Similarity=0.019 Sum_probs=9.8
Q ss_pred HHHHhcCChhHHHHHHHh
Q 047471 244 ALYSKFNLIGEAEKAFRL 261 (579)
Q Consensus 244 ~~~~~~~~~~~a~~~~~~ 261 (579)
...++.|+.+-+.-+++.
T Consensus 249 ~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 249 YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHc
Confidence 334455666666555554
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=43.13 E-value=78 Score=27.06 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=43.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 047471 376 IAAHANHRLGGSALKLFEQMKA--TGIKP----DSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDL 449 (579)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~m~~--~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (579)
++.+....++++|..++++..+ .+.++ +.......+..-.....-.-+..+.+++ . . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~--~-~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L--S-SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H--T-CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H--h-cCCHHHHHHHHHH
Confidence 4556666777777777766544 12221 1111122222222222222333333334 2 1 4455556666777
Q ss_pred HHhcCChHHHHHHHHh
Q 047471 450 LGRAGKLLEAEEYTKK 465 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~ 465 (579)
+.+.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888888888877654
No 295
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=42.08 E-value=2.2e+02 Score=26.67 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=28.0
Q ss_pred HHHHHHhcCChHHHHHHHHccCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 047471 344 LVNMYAKCGLISCSYKLFNEMLHR---NVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDS 404 (579)
Q Consensus 344 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 404 (579)
.+...+..|+.+-+.-+++.-..+ +...++.|..+ ++.|..+ +++.+.+.|..|+.
T Consensus 314 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~----iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTD----IVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCSCC
T ss_pred HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHH----HHHHHHHCcCCCCC
Confidence 344455677777666666654322 22223333333 3445543 44555566766653
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.46 E-value=2.1e+02 Score=26.25 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=41.6
Q ss_pred hHHHHHHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhCCC--hHHHHHHHHHhhhCCCCCCCHHH
Q 047471 240 NTIMALYSKFNLIGEAEKAFRLIEEKD---LISWNTFIAACSHCAD--YEKGLSVFKEMSNDHGVRPDDFT 305 (579)
Q Consensus 240 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~ 305 (579)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+....++..+... |+-+....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~~q~ 290 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITIDQM 290 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCHHHH
Confidence 567778888888888888888887763 2233444445444333 34567777777766 55554433
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=41.08 E-value=2.3e+02 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=16.3
Q ss_pred hHHHHHHHhcCChhHHHHHHHhcC
Q 047471 240 NTIMALYSKFNLIGEAEKAFRLIE 263 (579)
Q Consensus 240 ~~l~~~~~~~~~~~~a~~~~~~~~ 263 (579)
..|...|.+.|+.++..+++....
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777777777777766554
No 298
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=40.44 E-value=1.4e+02 Score=24.00 Aligned_cols=80 Identities=11% Similarity=0.038 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC
Q 047471 389 LKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAG-KLLEAEEYTKKFP 467 (579)
Q Consensus 389 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 467 (579)
..+-.++...|+.++. ....+..+......+.|..++++-...+.-.++......++..+.+.| .++.+..+++.+.
T Consensus 87 ~~I~~eL~~KGI~~~~--I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 87 KVIKLNLSKKGIDDNI--AEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHHHHTTTCCHHH--HHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHH--HHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 3455566666665332 112221111111233445555444332121122233445566666666 5555555666553
Q ss_pred CCC
Q 047471 468 LGQ 470 (579)
Q Consensus 468 ~~p 470 (579)
..|
T Consensus 165 ~~~ 167 (177)
T 3e3v_A 165 LIF 167 (177)
T ss_dssp HC-
T ss_pred CCC
Confidence 333
No 299
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=40.39 E-value=1.8e+02 Score=25.16 Aligned_cols=126 Identities=10% Similarity=-0.071 Sum_probs=55.4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHHHhCCCCChhHHH
Q 047471 366 HRNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAG-LVKEGEAYFNSMEKTYGISPDIEHFT 444 (579)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 444 (579)
.++...-...+.++...|+. .+...+.++.. .++...-...+.++...+ ....+...+..+.+ .++..+-.
T Consensus 139 d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~ 210 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRI 210 (280)
T ss_dssp CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHH
Confidence 34444444455555555442 23333333333 234333333333333333 12334443333332 24555555
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 047471 445 CLIDLLGRAGKLLEAEEYTKKFPLGQDPIVLGTLLSACRLRRDVVIGERLAKQLFHLQP 503 (579)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 503 (579)
..+.++.+.|+..-...+...+. .|+ +-...+.++...|+ ..+...+..+++..+
T Consensus 211 ~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~ 265 (280)
T 1oyz_A 211 EAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFD 265 (280)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCC
Confidence 56666666665443333333333 233 23344555555555 355556666555443
No 300
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.89 E-value=1.9e+02 Score=25.11 Aligned_cols=30 Identities=10% Similarity=-0.202 Sum_probs=13.1
Q ss_pred ChhHHhHHHHHHHhcCChhHHHHHHHhcCC
Q 047471 235 NPFVGNTIMALYSKFNLIGEAEKAFRLIEE 264 (579)
Q Consensus 235 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 264 (579)
+..+-...+.++.+.|+......+...+.+
T Consensus 205 ~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d 234 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDKRVLSVLCDELKK 234 (280)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhCCHhhHHHHHHHhcC
Confidence 344444444455555544433333333333
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=39.80 E-value=1.6e+02 Score=24.48 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=6.8
Q ss_pred HhcCChhHHHHHhcc
Q 047471 146 MKVGYSSDALLVYGE 160 (579)
Q Consensus 146 ~~~g~~~~A~~~~~~ 160 (579)
+..|+.+-...+++.
T Consensus 54 ~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 54 VITTLPSVVRLLVTA 68 (241)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc
Confidence 344444444444443
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.54 E-value=1.6e+02 Score=24.37 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=5.2
Q ss_pred hcCChhHHHHHHH
Q 047471 248 KFNLIGEAEKAFR 260 (579)
Q Consensus 248 ~~~~~~~a~~~~~ 260 (579)
..|+.+-+..+++
T Consensus 118 ~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 118 QFGHTSIVAYLIA 130 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHh
Confidence 3344444333333
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.45 E-value=1.3e+02 Score=25.63 Aligned_cols=54 Identities=9% Similarity=-0.085 Sum_probs=30.1
Q ss_pred HHHHhCCCcchHHHHHHHHHHCCCCCCccc-------HHHHHHHhc--ccCcccchhHHHHHH
Q 047471 174 AGFVENQQPEKGFEVFKLMLRQGLLPDRFS-------FAGGLEICS--VSNDLRKGMILHCLT 227 (579)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 227 (579)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+.+..+++.-
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344566777777777777666665555332 233333332 556666665555543
No 304
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.33 E-value=52 Score=31.98 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh------hhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 047471 440 IEHFTCLIDLLGRAGKLLEAEEYTKKFPLGQDP------IVLG-TLLSACRLRRDVVIGERLAKQLFHLQPTTTS 507 (579)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~------~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 507 (579)
...++.+++.|...+.++.|..+..+...+... ..|. .++..+...+++.+|.+.+..+++.-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 456778888888999999999999887533221 1121 2334466788999999999998888877543
No 305
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.15 E-value=1.8e+02 Score=24.87 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=57.6
Q ss_pred HHHHHHHccCChhHHHHHhcccCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHcccC--CCHhhHHHHHHHHhccCC
Q 047471 42 HVLNLYAKCGKMILARKVFDEMSERNL----VSWSAMISGHHQAGEHLLALEFFSQMHLL--PNEYIFASAISACAGIQS 115 (579)
Q Consensus 42 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--p~~~~~~~ll~~~~~~~~ 115 (579)
+.+...++.|+.+.+..+++.-...+. .-++ .+...+..|+.+-+..+++.-... ++..-. +.+...+..|+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~ 84 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSREDIVELLLRHGADPVLRKKNGA-TPFLLAAIAGS 84 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHHTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCC
Confidence 456667778888888888876544322 2223 344455667776555555542111 222111 22233334455
Q ss_pred hHHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCChhHHHHHhccCCC
Q 047471 116 LVKGQQIHAYSLKFGYASISFV--GNSLISMYMKVGYSSDALLVYGEAFE 163 (579)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (579)
.+ +++.+++.|..++... -.+.+...+..|+.+-...+++....
T Consensus 85 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 85 VK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp HH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 43 4444455555443211 11233344566777666666665443
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.91 E-value=1.8e+02 Score=24.56 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCC
Q 047471 386 GSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPD 439 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 439 (579)
+....+|..|...|+--. ...|......+...|++.+|.++|+.-++. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 567788888888877654 566777777788889999999999888886 65663
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.81 E-value=1e+02 Score=23.27 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=11.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHc
Q 047471 73 AMISGHHQAGEHLLALEFFSQM 94 (579)
Q Consensus 73 ~l~~~~~~~g~~~~a~~~~~~~ 94 (579)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 308
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=38.62 E-value=1.5e+02 Score=23.60 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCCh
Q 047471 386 GSALKLFEQMKATGIKPD-SVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDI 440 (579)
Q Consensus 386 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 440 (579)
+....+|..|...|+--. ...|......+...|++.+|.++|..-++. +-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 346677888888777654 556666677777888888888888888776 555543
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=38.49 E-value=47 Score=23.62 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHc-c-CChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHHHH
Q 047471 22 ISLHAAVLKMGIQPDVIVSNHVLNLYAK-C-GKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLALE 89 (579)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 89 (579)
..++..+.+.|+ -+..-... .-.. . .+.+.|.++++.++.++..+|..++.++...|+..-|..
T Consensus 24 ~~vld~L~~~~v-lt~~~~e~---I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 24 DQLWDVLLSREL-FRPHMIED---IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTTHHHHHHTTS-SCHHHHHH---HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHH---HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 347777777774 22222222 2222 2 467889999999999989999999999987777665543
No 310
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.38 E-value=80 Score=20.45 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=39.3
Q ss_pred CcchHHHHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 047471 1 MAKSISSLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKC 50 (579)
Q Consensus 1 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 50 (579)
|+-.++.++...+.-.-++++...++++.+.|. .+..+|-.-++.+++.
T Consensus 1 ~~pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 1 MTDGLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 344578888889988899999999999999985 7777887777776653
No 311
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.73 E-value=2.7e+02 Score=26.07 Aligned_cols=83 Identities=11% Similarity=0.089 Sum_probs=37.1
Q ss_pred HHHhcCChHHHHHHHHccCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCH
Q 047471 347 MYAKCGLISCSYKLFNEMLH---RNVVSWNTIIAAHANHRLGGSALKLFEQMKATGIKPDSV---TFIGLLTACNHAGLV 420 (579)
Q Consensus 347 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~ 420 (579)
..++.|+.+-+.-+++.-.. .+...++.|. ..+..|+.+-+ +.+.+.|..++.. ..+.|.. .+..|..
T Consensus 284 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~ 357 (437)
T 1n11_A 284 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH-VASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQ-AAQQGHT 357 (437)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHH-HHHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCH
T ss_pred HHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHH-HHHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHH-HHHCChH
Confidence 34455666655555554322 1222223333 33456666543 4445556555432 2233333 3345665
Q ss_pred HHHHHHHHHhHHHhCCCCCh
Q 047471 421 KEGEAYFNSMEKTYGISPDI 440 (579)
Q Consensus 421 ~~a~~~~~~~~~~~~~~~~~ 440 (579)
+-+ +.+.+. |..|+.
T Consensus 358 ~iv----~~Ll~~-ga~~~~ 372 (437)
T 1n11_A 358 DIV----TLLLKN-GASPNE 372 (437)
T ss_dssp HHH----HHHHHT-TCCSCC
T ss_pred HHH----HHHHHC-cCCCCC
Confidence 433 333343 666654
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.58 E-value=83 Score=24.66 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=39.6
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCCCCh---hhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLHRNV---VSWNTIIAAHANHRL--GGSALKLFEQMKATGIKPD 403 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 403 (579)
..++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 5677788888999999999998865532 233444445554322 3456777777776665443
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.01 E-value=1.4e+02 Score=24.81 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=8.0
Q ss_pred HHhcCChHHHHHHHHh
Q 047471 450 LGRAGKLLEAEEYTKK 465 (579)
Q Consensus 450 ~~~~g~~~~A~~~~~~ 465 (579)
|.+.|.+++|.+++++
T Consensus 124 Ciek~~f~kA~eiLkr 139 (235)
T 3bu8_A 124 CIKNKEFEKASKILKK 139 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHH
Confidence 4445555555555544
No 314
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.47 E-value=1.6e+02 Score=25.08 Aligned_cols=56 Identities=9% Similarity=-0.045 Sum_probs=35.8
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhcCCCCchh-------HHHHHHHHH--ccCChhHHHHHhcc
Q 047471 7 SLLHHCSKTKALQQGISLHAAVLKMGIQPDVIV-------SNHVLNLYA--KCGKMILARKVFDE 62 (579)
Q Consensus 7 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~ 62 (579)
..+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+.-+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 345566678999999999998888887666433 233333332 55766666665554
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.61 E-value=79 Score=24.80 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHc
Q 047471 73 AMISGHHQAGEHLLALEFFSQM 94 (579)
Q Consensus 73 ~l~~~~~~~g~~~~a~~~~~~~ 94 (579)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.77 E-value=2.1e+02 Score=23.60 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=31.1
Q ss_pred HHHHHHH---hCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcC
Q 047471 272 TFIAACS---HCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLA 317 (579)
Q Consensus 272 ~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 317 (579)
.+|+++. +-.+++.|+-++-+|.+. | .|....-..++.+.-..|
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~-G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEA-G-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhhcc
Confidence 3444443 457899999999999998 8 776666666666665555
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.14 E-value=1.7e+02 Score=23.99 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=29.1
Q ss_pred HhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcC
Q 047471 278 SHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLA 317 (579)
Q Consensus 278 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 317 (579)
.+-.+++.|+-++-+|.+. |-.|....-..++.+.-..|
T Consensus 18 iRGSDpDAAly~LaRMl~~-GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTA-GGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTG
T ss_pred HhCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc
Confidence 3457899999999999988 87777766666666654444
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.63 E-value=2e+02 Score=23.04 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=12.2
Q ss_pred HHHHccCChhHHHHHhcccC
Q 047471 45 NLYAKCGKMILARKVFDEMS 64 (579)
Q Consensus 45 ~~~~~~g~~~~a~~~~~~~~ 64 (579)
...+..|+.+....+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTT
T ss_pred HHHHHhccHHHHHHHHHcCC
Confidence 34455677777777776543
No 319
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=31.31 E-value=95 Score=21.71 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCCCCcccHHHHHHHHHhcCChHHH
Q 047471 21 GISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSERNLVSWSAMISGHHQAGEHLLA 87 (579)
Q Consensus 21 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 87 (579)
...+++.+.+.|+ -+..-+..+. ......+.|..+++.+++.+..+|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 5568888888775 3333333322 2356778899999999888888899999888887765444
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.09 E-value=1.1e+02 Score=23.54 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047471 394 QMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 394 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
.+.+.|++++..-.. ++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 12 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCE
Confidence 355566666544332 233333444555666666666654 4445555555556666665543
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.85 E-value=4.4e+02 Score=28.19 Aligned_cols=128 Identities=9% Similarity=-0.048 Sum_probs=71.4
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcCChH
Q 047471 241 TIMALYSKFNLIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLASVQ 320 (579)
Q Consensus 241 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (579)
.++..+...|..+-+.++...... ++..--.+..+|...|++++|...|++.- . |+..+...... ..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~-gl~~~~~~~~~----------~~ 881 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-L-VLYSHTSQFAV----------LR 881 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-C-TTCSSCCSCGG----------GH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-h-hcccCcccccc----------hh
Confidence 366667777888777766655554 44333456778889999999999998874 2 44332111000 00
Q ss_pred HHHHHHHHHHHccCCCCcchHhHHHHHHHhcCChHHHHHHHHccC----CCCh----hhHHHHHHHHHhcC
Q 047471 321 HGKQIHAHLIRMRLNQDVGVGNALVNMYAKCGLISCSYKLFNEML----HRNV----VSWNTIIAAHANHR 383 (579)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~~ 383 (579)
....++.... ........|.-++..+.+.+.++-+.++-+..+ ..|. ..|+.++++.+..|
T Consensus 882 ~~~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0000110000 001112366778888888888888777666542 2232 25666777665543
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.82 E-value=1.8e+02 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=8.7
Q ss_pred HhCcCChHHHHHHHHHHH
Q 047471 313 CAGLASVQHGKQIHAHLI 330 (579)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~ 330 (579)
....|+...+.++.+.+.
T Consensus 217 A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455555555554443
No 323
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.66 E-value=1.4e+02 Score=24.70 Aligned_cols=182 Identities=15% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHcccC--CCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 047471 72 SAMISGHHQAGEHLLALEFFSQMHLL--PNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVG 149 (579)
Q Consensus 72 ~~l~~~~~~~g~~~~a~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (579)
+..+...+..|+.+....+++.-... .....-.+.+...+..|+.+-.+.+++. ...+......-.+.+...+..|
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHT
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHHHHcC
Q ss_pred ChhHHHHHhccCCCCCcchHH--HHHHHHHhCCCcchHHHHHHHHHHCCCCCCccc--HHHHHHHhcccCcccchhHHHH
Q 047471 150 YSSDALLVYGEAFEPNLVSFN--ALIAGFVENQQPEKGFEVFKLMLRQGLLPDRFS--FAGGLEICSVSNDLRKGMILHC 225 (579)
Q Consensus 150 ~~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~ 225 (579)
+.+-+..+++....++..... ..+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..+++
T Consensus 85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Q ss_pred HHHHhCCCCChhHHhHHHHHHHhcCChhHHHHHHHh
Q 047471 226 LTVKCKLESNPFVGNTIMALYSKFNLIGEAEKAFRL 261 (579)
Q Consensus 226 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 261 (579)
....+........+-+...+..|+.+-+.-+++.
T Consensus 161 --~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 161 --YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp --TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
No 324
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.63 E-value=61 Score=24.90 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 047471 7 SLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMI 54 (579)
Q Consensus 7 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 54 (579)
.++..+...+..-.|.++++.+.+.++..+..|-...++.+...|-+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 466777777778889999999988887777777777788888888543
No 325
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.42 E-value=65 Score=24.39 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=37.5
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 047471 7 SLLHHCSKTKALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGKMI 54 (579)
Q Consensus 7 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 54 (579)
.++..+...+..-.|.++++.+.+.++..+..|-...++.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 466667666778889999999998887777777777788888888543
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.13 E-value=1.2e+02 Score=25.52 Aligned_cols=31 Identities=6% Similarity=-0.017 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 047471 472 PIVLGTLLSACRLRRDVVIGERLAKQLFHLQ 502 (579)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 502 (579)
...|......+-..|++.+|..+|+..++..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3445555555666777777777777777644
No 327
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=30.00 E-value=2e+02 Score=23.85 Aligned_cols=49 Identities=18% Similarity=0.049 Sum_probs=25.6
Q ss_pred HHHHHccCChhHHHHHhccc-CC---CCcccHHHHHHHHHhcCChHHHHHHHHH
Q 047471 44 LNLYAKCGKMILARKVFDEM-SE---RNLVSWSAMISGHHQAGEHLLALEFFSQ 93 (579)
Q Consensus 44 ~~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 93 (579)
+...++.|+.+.+..+++.- .. +|..-++.|. ..+..|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALH-IAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHH-HHHHcCCHHHHHHHHHc
Confidence 45556677777777777652 12 2333333333 33445666555555554
No 328
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=30.00 E-value=1.3e+02 Score=22.87 Aligned_cols=149 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhCC
Q 047471 104 ASAISACAGIQSLVKGQQIHAYSLKFGYASISFVGNSLISMYMKVGYSSDALLVYGEAFE---PNLVSFNALIAGFVENQ 180 (579)
Q Consensus 104 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 180 (579)
...+...+..|+.+..+.+++. ....+......-.+.+.. +..|+.+-+..+++.... +|..-++.+..+.....
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Q ss_pred CcchHHHHHHHHHHCCCCCC--cccHHHHHHHhcccCcccchhHHHHHHHHhCCCCChhHHhHHHHHHHhcCChhHHHHH
Q 047471 181 QPEKGFEVFKLMLRQGLLPD--RFSFAGGLEICSVSNDLRKGMILHCLTVKCKLESNPFVGNTIMALYSKFNLIGEAEKA 258 (579)
Q Consensus 181 ~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 258 (579)
.++++.+.+.|..++ ...-.+.+...+..|+.+.+..+++. ..+........+-+....+.|+.+-+.-+
T Consensus 81 -----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 81 -----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp -----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCCHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Q ss_pred HHhc
Q 047471 259 FRLI 262 (579)
Q Consensus 259 ~~~~ 262 (579)
++.+
T Consensus 153 l~~~ 156 (156)
T 1bd8_A 153 QGHM 156 (156)
T ss_dssp HTTC
T ss_pred HhhC
No 329
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.08 E-value=2.9e+02 Score=24.03 Aligned_cols=15 Identities=13% Similarity=-0.217 Sum_probs=6.7
Q ss_pred HHhcCChHHHHHHHH
Q 047471 348 YAKCGLISCSYKLFN 362 (579)
Q Consensus 348 ~~~~g~~~~A~~~~~ 362 (579)
.+..|+.+-+..+++
T Consensus 69 A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 69 AATLEDTKIVKILLF 83 (285)
T ss_dssp HTTSSSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 334444444444444
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.05 E-value=96 Score=21.98 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=28.4
Q ss_pred ChhHHHHHHHhcCCCCcchHHHHHHHHHhCCChHHHH
Q 047471 251 LIGEAEKAFRLIEEKDLISWNTFIAACSHCADYEKGL 287 (579)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 287 (579)
..+.|.++++.+..+++.+|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 5678888888888888888888888887767655443
No 331
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.90 E-value=5.1e+02 Score=26.22 Aligned_cols=39 Identities=26% Similarity=0.114 Sum_probs=25.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHcccCCC--HhhHHHHHHHHh
Q 047471 73 AMISGHHQAGEHLLALEFFSQMHLLPN--EYIFASAISACA 111 (579)
Q Consensus 73 ~l~~~~~~~g~~~~a~~~~~~~~~~p~--~~~~~~ll~~~~ 111 (579)
.+|--+.|.|+.++|.++.++...... ...|...+..++
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHH
Confidence 556667888999999988888765421 135666666665
No 332
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.35 E-value=1.9e+02 Score=22.45 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=31.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 047471 394 QMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 394 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcE
Confidence 34556666554433 2333444444555666666666655 4445555555556666666543
No 333
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.91 E-value=85 Score=24.46 Aligned_cols=57 Identities=9% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC----CCcccHHHHHHHHHhcCCh
Q 047471 27 AVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE----RNLVSWSAMISGHHQAGEH 84 (579)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 84 (579)
.+.+.|..++.. -..++..+...+..-.|.++++.+.+ .+..|.-.-+..+...|-.
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344555544322 33455555555556666666666532 2334444455556666544
No 334
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.63 E-value=79 Score=28.91 Aligned_cols=23 Identities=0% Similarity=0.186 Sum_probs=11.6
Q ss_pred HHHHHHhhhhcchhHHHHHHHHH
Q 047471 6 SSLLHHCSKTKALQQGISLHAAV 28 (579)
Q Consensus 6 ~~ll~~~~~~~~~~~a~~~~~~~ 28 (579)
..++.-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34444555555555555555544
No 335
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.22 E-value=54 Score=27.27 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccHHHHHHHHHcCCC
Q 047471 477 TLLSACRLRRDVVIGERLAKQLFHLQPTTTSPYVLLSNLYASDGM 521 (579)
Q Consensus 477 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 521 (579)
..+..|.+.|.+++|.+++++....+|.+...-..|..+-.+..-
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Confidence 445678999999999999999998766654444455554444443
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.59 E-value=1.5e+02 Score=23.39 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=29.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHh-CCCCChhHHHHHHHHHHhcCCh
Q 047471 395 MKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTY-GISPDIEHFTCLIDLLGRAGKL 456 (579)
Q Consensus 395 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 456 (579)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.. +...+..|...-++.+...|-.
T Consensus 24 L~~~g~r~T~qR~-~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQRE-VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHHHH-HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445666554432 33344445555556666666665430 1223444444455555555543
No 337
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.40 E-value=3.1e+02 Score=22.82 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=33.9
Q ss_pred HHHHHHHHH---hCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHhCcC
Q 047471 270 WNTFIAACS---HCADYEKGLSVFKEMSNDHGVRPDDFTFASILAACAGLA 317 (579)
Q Consensus 270 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 317 (579)
+-.+|+++. +-.+++.|+-++-+|.+. |-.|....-..++.+.-..|
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~-GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEA-GEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc
Confidence 334455544 457899999999999998 88887777777766665544
No 338
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.31 E-value=2.3e+02 Score=22.71 Aligned_cols=56 Identities=11% Similarity=-0.031 Sum_probs=24.8
Q ss_pred HhcCChHHHHHHHHHcccCCCHhhHHHHHHHHhccCChHHHHHHHHHHHHhcCCCc
Q 047471 79 HQAGEHLLALEFFSQMHLLPNEYIFASAISACAGIQSLVKGQQIHAYSLKFGYASI 134 (579)
Q Consensus 79 ~~~g~~~~a~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (579)
++.|+.+....+++.-....+...-.+.+...+..|+.+.-.++.+.+++.|..++
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 45566666555554432111101112233333444454444555555666665544
No 339
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.29 E-value=78 Score=20.01 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHHCCCCCCcccHHHHHHHh-cccCc
Q 047471 182 PEKGFEVFKLMLRQGLLPDRFSFAGGLEIC-SVSND 216 (579)
Q Consensus 182 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~ 216 (579)
.++|.+.|.+|++..-.+...||...|+.+ ++..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPr 37 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPR 37 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCc
Confidence 467888888887755556667887777777 55444
No 340
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.92 E-value=3e+02 Score=24.75 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH-
Q 047471 379 HANHRLGGSALKLFEQMKATGIKPDSVTFIGLLTACNHAGLVKEGEAYFNSMEKTYGISPDIEHFTCLIDLLGRAGKLL- 457 (579)
Q Consensus 379 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 457 (579)
+...|++++|+..|+... +...+.......+.+++.+++....+ |-.-+..=....+..
T Consensus 112 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icre----------Yilal~iEl~Rr~l~~ 171 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICRE----------YIVGLSMETERKKLPK 171 (320)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTTSCC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhccc
Q ss_pred ----------HHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 047471 458 ----------EAEEYTKKFPLGQ--DPIVLGTLLSACRLRRDVVIGERLAKQLFHLQPT 504 (579)
Q Consensus 458 ----------~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 504 (579)
|-..+|.....+| -..++...+....+.+++..|-.+.++++++.|+
T Consensus 172 ~~~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 172 ETLEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp CSHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred CCchhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 341
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.86 E-value=87 Score=23.87 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 047471 17 ALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCG 51 (579)
Q Consensus 17 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 51 (579)
..-.|.++++.+.+.++..+..|-..-++.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34444455555444443334443333444444444
No 342
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.80 E-value=98 Score=24.10 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=23.1
Q ss_pred HHHHhhhhc-chhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 047471 8 LLHHCSKTK-ALQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCGK 52 (579)
Q Consensus 8 ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 52 (579)
++..+...+ ..-.|.++++.+.+.++..+..|-...++.+...|-
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 344444444 455556666666555544444444444555555553
No 343
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.58 E-value=5.9e+02 Score=25.78 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=14.6
Q ss_pred HHHHhhhhcchhHHHHHHHHH
Q 047471 8 LLHHCSKTKALQQGISLHAAV 28 (579)
Q Consensus 8 ll~~~~~~~~~~~a~~~~~~~ 28 (579)
++=-|.|.|++++|.++.++.
T Consensus 158 ~IyY~LR~G~~~~A~e~~~~~ 178 (661)
T 2qx5_A 158 LIFYLLRAGLIKEALQVLVEN 178 (661)
T ss_dssp HHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHh
Confidence 344577888888888777654
No 344
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.15 E-value=3.5e+02 Score=24.49 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=19.7
Q ss_pred hHHHHHHHhcCChHHHHHHHHccCCCC
Q 047471 342 NALVNMYAKCGLISCSYKLFNEMLHRN 368 (579)
Q Consensus 342 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 368 (579)
..++.-|...|+.++|...++++..|.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 456777777788888888888876553
No 345
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.12 E-value=91 Score=24.08 Aligned_cols=58 Identities=7% Similarity=0.114 Sum_probs=33.4
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC----CCcccHHHHHHHHHhcCCh
Q 047471 26 AAVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE----RNLVSWSAMISGHHQAGEH 84 (579)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 84 (579)
+.+.+.|..++.. -..++..+...+..-.|.++++.+.+ -+..|...-+..+...|-.
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3455667655443 33555666666666677777777643 2344555555666666654
No 346
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.97 E-value=1e+02 Score=24.39 Aligned_cols=67 Identities=6% Similarity=0.010 Sum_probs=41.6
Q ss_pred hhHHHHHHH-HHHHhcCCCCchhHHHHHHHHHccCChhHHHHHhcccCC------CCcccHHHHHHHHHhcCChH
Q 047471 18 LQQGISLHA-AVLKMGIQPDVIVSNHVLNLYAKCGKMILARKVFDEMSE------RNLVSWSAMISGHHQAGEHL 85 (579)
Q Consensus 18 ~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 85 (579)
.+.+.+-+. .+.+.|...+. .-..++..+...++.-.|.++++.+.+ -+..|.-.-+..+...|-..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344444443 45567776644 455677888887778888888877642 23445555566777777553
No 347
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.59 E-value=48 Score=16.00 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=9.5
Q ss_pred hhhHHHHHHhhhh
Q 047471 565 IGEINYMLKTLSL 577 (579)
Q Consensus 565 ~~~~~~~~~~~~~ 577 (579)
.++.|..|+++++
T Consensus 3 adelykeledlqe 15 (27)
T 3twe_A 3 ADELYKELEDLQE 15 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677888888764
No 348
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.40 E-value=3.1e+02 Score=21.80 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=26.6
Q ss_pred HHHhcCChhHHHHHhccCC-C---CCcchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCc
Q 047471 144 MYMKVGYSSDALLVYGEAF-E---PNLVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDR 201 (579)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 201 (579)
..+..|+.+....++.... . .+..-++.|..+ +..|+ .++++.+.+.|..++.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~----~~~v~~Ll~~g~~~~~ 67 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNND----IEIAKALIDRGADINL 67 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTC----HHHHHHHHHTTCCTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCC----HHHHHHHHHcCCCCCC
Confidence 3456777887777776543 2 222223333333 33444 3444455555655543
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.96 E-value=97 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 047471 18 LQQGISLHAAVLKMGIQPDVIVSNHVLNLYAKCG 51 (579)
Q Consensus 18 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 51 (579)
.-.|.++++.+.+.++..+..|-..-++.+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444445544444443334443333344444444
No 350
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.86 E-value=3.9e+02 Score=22.74 Aligned_cols=51 Identities=8% Similarity=-0.105 Sum_probs=25.1
Q ss_pred HHhCCCcchHHHHHHHHHHCCCCC-------CcccHHHHHHHhc--ccCcccchhHHHHH
Q 047471 176 FVENQQPEKGFEVFKLMLRQGLLP-------DRFSFAGGLEICS--VSNDLRKGMILHCL 226 (579)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~ 226 (579)
.++.|+.+.+..+++...+.+... |..-.+.|..++. +.|+.+-+..+++.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 345666666666666655554322 2233334444443 24555555444443
No 351
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.66 E-value=3.5e+02 Score=22.17 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=26.8
Q ss_pred HHHhhhhcchhHHHHHHHHHHHh-cCCCCch--hHHHHHHHHHccCChhHHHHHhccc
Q 047471 9 LHHCSKTKALQQGISLHAAVLKM-GIQPDVI--VSNHVLNLYAKCGKMILARKVFDEM 63 (579)
Q Consensus 9 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 63 (579)
+...++.|+.+.+..+ ++. |..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 7 L~~A~~~g~~~~v~~L----l~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 60 (232)
T 2rfa_A 7 LLLAAKENDVQALSKL----LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60 (232)
T ss_dssp HHHHHHTTCHHHHHHH----HTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHH----HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 4445566666544444 333 5443322 1123455566778777777776653
No 352
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.62 E-value=3.3e+02 Score=21.78 Aligned_cols=56 Identities=13% Similarity=0.279 Sum_probs=30.3
Q ss_pred HhcCChhHHHHHhccCCCC-C-cchHHHHHHHHHhCCCcchHHHHHHHHHHCCCCCCcc
Q 047471 146 MKVGYSSDALLVYGEAFEP-N-LVSFNALIAGFVENQQPEKGFEVFKLMLRQGLLPDRF 202 (579)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 202 (579)
++.|+++....+++..... + ..-+ +.+...+..|+.+.-.++.+.+.+.|..++..
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~ 71 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSR 71 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC
Confidence 4556666666665543211 1 0111 23444455666665667777777777766643
Done!