BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047472
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 9/151 (5%)
Query: 1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVP---ESIGIADL 57
ME+ +VL MN G+G+TSYAKNS +++ KP +E+ + +L +P + I +ADL
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58 GCSSGPNSLLVISEIMDII----HARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFF 113
GC+SGPN+LL + +I+ I + L+RP+ ++ LNDL NDFNS+F+ LP+F+
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPT--IQIFLNDLFPNDFNSVFKLLPSFY 118
Query: 114 KKQKQEKGIGFGRCYVSAVAGSFYDRLFPDK 144
+K ++E G G C + A+ GSFY RLFP++
Sbjct: 119 RKLEKENGRKIGSCLIGAMPGSFYSRLFPEE 149
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 10/144 (6%)
Query: 1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILC-EKVPESIGIADLGC 59
M+V +VLHM G GE SYA NS +Q ++IS KP E AI + + V + IADLGC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60 SSGPNSLLVISEIMDIIHARCRNLDRP-SPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQ 118
SSGPN+L ++E++ + + + R SPE+++ LNDLPGNDFN+IF +LP
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPI------- 113
Query: 119 EKGIGFGRCYVSAVAGSFYDRLFP 142
E + G C+++ V GSFY RLFP
Sbjct: 114 ENDVD-GVCFINGVPGSFYGRLFP 136
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 95/151 (62%), Gaps = 10/151 (6%)
Query: 1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVP---ESIGIADL 57
ME+ +VLHMN G+G+TSYAKNS+ +I KP +E+ I +L +P + + DL
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYNLFLIRV-KPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58 GCSSGPNSLLVISEIMDII----HARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFF 113
GC+SGPN+ + +I+ I + L+RP+ ++ LNDL NDFNS+F+ LP+F+
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPT--IQIFLNDLFQNDFNSVFKLLPSFY 117
Query: 114 KKQKQEKGIGFGRCYVSAVAGSFYDRLFPDK 144
+ ++E G G C + A+ GSFY RLFP++
Sbjct: 118 RNLEKENGRKIGSCLIGAMPGSFYSRLFPEE 148
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAI--LGILCEKVPESIGIADLG 58
M++ ++L M G G+ SYA NS Q+ + +EE + + + P DLG
Sbjct: 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 59 CSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQ 118
CSSG N++ +I I+ I R PEF +DLP NDFN++F+ LP
Sbjct: 61 CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120
Query: 119 EKGI---GFGRCYVSAVAGSFYDRLFPDK 144
E+ + G +V+ V GSFY RLFP +
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPAR 149
>pdb|3PHS|A Chain A, Crystal Structure Of Gbs52, The Minor Pilin In
Gram-Positive Pathogen Streptococcus Agalactiae
Length = 249
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 73 MDIIHARCRNLDRPSPEFRVS 93
+ I+H R++DRP+P+ ++
Sbjct: 15 LTIVHLEARDIDRPNPQLEIA 35
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 99 GNDFNSIFETLPAFFKK 115
G+DF IF T+PAFF K
Sbjct: 281 GSDFGPIFMTIPAFFAK 297
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 99 GNDFNSIFETLPAFFKK 115
G+DF IF T+PAFF K
Sbjct: 280 GSDFGPIFMTIPAFFAK 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,264,663
Number of Sequences: 62578
Number of extensions: 161021
Number of successful extensions: 349
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)