Query 047472
Match_columns 163
No_of_seqs 114 out of 381
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 9E-62 2E-66 423.4 15.6 163 1-163 13-180 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.1E-50 2.5E-55 348.4 11.5 123 36-163 1-125 (334)
3 TIGR02072 BioC biotin biosynth 97.6 0.00022 4.7E-09 56.5 7.0 107 15-160 6-113 (240)
4 PRK01683 trans-aconitate 2-met 96.3 0.012 2.7E-07 47.9 6.7 101 16-160 7-108 (258)
5 PRK14103 trans-aconitate 2-met 96.2 0.02 4.4E-07 46.9 7.1 100 16-160 5-104 (255)
6 PRK10258 biotin biosynthesis p 96.2 0.027 5.8E-07 45.8 7.8 101 16-160 18-118 (251)
7 TIGR03587 Pse_Me-ase pseudamin 95.5 0.092 2E-06 42.2 8.3 106 14-159 14-119 (204)
8 PRK06202 hypothetical protein; 94.9 0.37 8E-06 38.8 10.1 86 49-160 59-144 (232)
9 PF12847 Methyltransf_18: Meth 94.3 0.15 3.2E-06 35.7 5.8 45 52-97 3-61 (112)
10 COG2226 UbiE Methylase involve 94.3 0.16 3.5E-06 42.3 6.7 86 50-162 51-136 (238)
11 KOG2940 Predicted methyltransf 94.3 0.041 9E-07 46.5 3.1 22 141-162 133-154 (325)
12 smart00138 MeTrc Methyltransfe 93.9 0.17 3.7E-06 42.2 6.1 19 141-159 199-217 (264)
13 PF13489 Methyltransf_23: Meth 93.8 0.062 1.3E-06 39.7 3.1 23 138-160 71-93 (161)
14 TIGR02752 MenG_heptapren 2-hep 93.0 0.27 5.9E-06 39.2 5.7 84 51-160 46-129 (231)
15 PRK07580 Mg-protoporphyrin IX 92.5 0.82 1.8E-05 36.2 7.9 49 50-99 63-123 (230)
16 TIGR00740 methyltransferase, p 92.4 0.62 1.3E-05 37.6 7.2 84 50-159 53-136 (239)
17 PRK00121 trmB tRNA (guanine-N( 92.2 0.24 5.2E-06 39.5 4.4 45 24-68 14-58 (202)
18 PRK05785 hypothetical protein; 91.9 0.45 9.7E-06 38.7 5.8 27 134-160 99-125 (226)
19 PRK00216 ubiE ubiquinone/menaq 91.9 0.5 1.1E-05 37.3 5.9 85 51-160 52-136 (239)
20 PRK08317 hypothetical protein; 91.5 0.88 1.9E-05 35.6 6.9 26 135-160 77-102 (241)
21 PRK06922 hypothetical protein; 91.3 0.58 1.2E-05 44.5 6.5 82 51-158 419-500 (677)
22 PTZ00098 phosphoethanolamine N 91.3 0.65 1.4E-05 38.6 6.2 81 49-159 51-131 (263)
23 PF13847 Methyltransf_31: Meth 91.2 0.52 1.1E-05 35.3 5.1 21 50-70 3-23 (152)
24 PLN02244 tocopherol O-methyltr 91.1 2.3 4.9E-05 36.7 9.6 26 134-159 175-200 (340)
25 PF03848 TehB: Tellurite resis 91.0 0.35 7.6E-06 39.0 4.2 64 30-102 16-91 (192)
26 TIGR02021 BchM-ChlM magnesium 90.7 2.7 5.9E-05 33.3 9.1 70 32-103 38-121 (219)
27 PF08242 Methyltransf_12: Meth 90.4 0.34 7.3E-06 33.4 3.2 80 55-159 1-80 (99)
28 KOG2904 Predicted methyltransf 90.1 0.88 1.9E-05 39.3 6.0 72 33-105 131-216 (328)
29 PRK11188 rrmJ 23S rRNA methylt 88.7 1.4 3E-05 35.4 6.0 18 141-158 113-130 (209)
30 PLN02490 MPBQ/MSBQ methyltrans 88.2 1.4 3.1E-05 38.4 6.2 79 51-159 114-192 (340)
31 PLN02336 phosphoethanolamine N 88.1 1.1 2.3E-05 40.1 5.4 20 141-160 99-118 (475)
32 COG4106 Tam Trans-aconitate me 88.1 0.93 2E-05 38.0 4.6 22 139-160 86-107 (257)
33 TIGR02716 C20_methyl_CrtF C-20 86.6 5.7 0.00012 33.3 8.8 80 49-157 148-227 (306)
34 PRK14121 tRNA (guanine-N(7)-)- 86.4 1.8 3.9E-05 38.6 5.8 20 139-158 186-205 (390)
35 PRK15451 tRNA cmo(5)U34 methyl 86.2 3.4 7.4E-05 33.7 7.1 22 49-70 55-76 (247)
36 PF00891 Methyltransf_2: O-met 86.0 5.8 0.00013 31.9 8.3 71 49-156 99-169 (241)
37 TIGR00091 tRNA (guanine-N(7)-) 85.3 1.6 3.5E-05 34.3 4.6 21 139-159 81-101 (194)
38 KOG3010 Methyltransferase [Gen 85.2 0.65 1.4E-05 39.2 2.3 17 142-158 97-113 (261)
39 PLN02336 phosphoethanolamine N 84.9 2.5 5.5E-05 37.7 6.1 29 132-160 319-347 (475)
40 TIGR01934 MenG_MenH_UbiE ubiqu 84.6 5.4 0.00012 30.9 7.2 83 50-160 39-121 (223)
41 PLN02233 ubiquinone biosynthes 84.0 4.3 9.3E-05 33.6 6.7 20 141-160 141-160 (261)
42 PF05175 MTS: Methyltransferas 83.5 10 0.00023 29.0 8.4 20 51-70 32-51 (170)
43 PRK12335 tellurite resistance 82.7 2.4 5.2E-05 35.5 4.8 44 52-98 122-177 (287)
44 PF08241 Methyltransf_11: Meth 81.6 1.3 2.7E-05 29.3 2.2 27 132-158 47-73 (95)
45 smart00828 PKS_MT Methyltransf 80.9 2.5 5.5E-05 33.4 4.1 45 53-98 2-60 (224)
46 COG2242 CobL Precorrin-6B meth 80.7 3.9 8.4E-05 33.1 5.0 63 34-98 16-94 (187)
47 TIGR02469 CbiT precorrin-6Y C5 80.6 1.3 2.9E-05 31.0 2.2 19 51-69 20-38 (124)
48 PF01728 FtsJ: FtsJ-like methy 79.8 2.2 4.8E-05 32.8 3.4 35 35-69 8-42 (181)
49 PRK11036 putative S-adenosyl-L 79.7 2.2 4.8E-05 34.8 3.5 21 49-69 43-63 (255)
50 TIGR03438 probable methyltrans 79.2 2.6 5.7E-05 35.6 3.9 38 34-72 48-85 (301)
51 PRK00107 gidB 16S rRNA methylt 79.2 10 0.00022 30.1 7.0 21 49-69 44-64 (187)
52 PF01209 Ubie_methyltran: ubiE 79.1 4.7 0.0001 33.1 5.2 84 50-160 47-131 (233)
53 TIGR03533 L3_gln_methyl protei 78.1 8.9 0.00019 32.3 6.7 21 51-71 122-142 (284)
54 PRK11873 arsM arsenite S-adeno 77.5 5.6 0.00012 32.6 5.3 27 133-159 134-160 (272)
55 PRK00274 ksgA 16S ribosomal RN 76.5 3.7 8.1E-05 34.2 4.0 49 51-104 43-103 (272)
56 TIGR00478 tly hemolysin TlyA f 76.4 3.2 6.9E-05 34.2 3.5 34 35-70 62-95 (228)
57 TIGR00477 tehB tellurite resis 76.0 1.8 3.9E-05 34.2 1.8 20 51-70 31-50 (195)
58 PRK08287 cobalt-precorrin-6Y C 75.9 2 4.4E-05 33.3 2.1 21 50-70 31-51 (187)
59 PRK07402 precorrin-6B methylas 75.0 7.6 0.00017 30.3 5.2 19 51-69 41-59 (196)
60 PF05148 Methyltransf_8: Hypot 73.3 2.8 6.1E-05 34.7 2.4 18 48-65 70-87 (219)
61 PF13649 Methyltransf_25: Meth 72.9 2.2 4.7E-05 29.6 1.5 81 54-159 1-82 (101)
62 PRK11207 tellurite resistance 72.8 2.3 4.9E-05 33.6 1.7 20 51-70 31-50 (197)
63 COG2230 Cfa Cyclopropane fatty 72.8 12 0.00025 32.2 6.1 58 49-109 71-141 (283)
64 PRK11088 rrmA 23S rRNA methylt 72.7 4.9 0.00011 33.2 3.7 21 50-70 85-105 (272)
65 PF12570 DUF3750: Protein of u 71.4 8.1 0.00018 29.4 4.3 44 26-77 70-113 (128)
66 PRK04266 fibrillarin; Provisio 70.5 2.8 6.1E-05 34.3 1.8 21 51-71 73-93 (226)
67 PRK00312 pcm protein-L-isoaspa 70.3 20 0.00043 28.2 6.7 19 50-68 78-96 (212)
68 TIGR00536 hemK_fam HemK family 69.6 18 0.00039 30.2 6.6 20 52-71 116-135 (284)
69 PF13679 Methyltransf_32: Meth 69.4 8.5 0.00018 28.7 4.1 40 29-70 6-45 (141)
70 PF02353 CMAS: Mycolic acid cy 69.3 16 0.00036 30.7 6.2 46 51-97 63-121 (273)
71 PF12147 Methyltransf_20: Puta 69.1 17 0.00037 31.6 6.3 50 32-96 119-168 (311)
72 KOG3045 Predicted RNA methylas 68.9 4.4 9.5E-05 35.0 2.6 63 48-110 178-251 (325)
73 cd02440 AdoMet_MTases S-adenos 68.3 2.5 5.4E-05 27.3 0.9 16 53-68 1-16 (107)
74 smart00650 rADc Ribosomal RNA 68.2 10 0.00022 28.9 4.4 20 52-71 15-34 (169)
75 TIGR01983 UbiG ubiquinone bios 67.8 6.8 0.00015 30.8 3.5 21 49-69 44-64 (224)
76 KOG1541 Predicted protein carb 66.5 3.7 8E-05 34.6 1.7 44 16-64 21-64 (270)
77 PF05185 PRMT5: PRMT5 arginine 66.4 16 0.00035 33.0 6.0 36 36-71 170-207 (448)
78 COG2813 RsmC 16S RNA G1207 met 65.2 9.6 0.00021 33.0 4.0 21 52-72 160-180 (300)
79 TIGR03534 RF_mod_PrmC protein- 65.1 5.9 0.00013 31.6 2.6 21 50-70 87-107 (251)
80 PRK11805 N5-glutamine S-adenos 65.0 19 0.00042 30.7 5.9 20 52-71 135-154 (307)
81 PRK15001 SAM-dependent 23S rib 64.5 14 0.0003 32.8 5.0 19 52-70 230-248 (378)
82 PRK14966 unknown domain/N5-glu 64.4 21 0.00045 32.3 6.2 44 52-98 253-310 (423)
83 PTZ00146 fibrillarin; Provisio 64.1 5 0.00011 34.5 2.1 21 51-71 133-153 (293)
84 PLN02585 magnesium protoporphy 64.0 10 0.00022 32.7 4.1 21 51-71 145-165 (315)
85 TIGR00138 gidB 16S rRNA methyl 63.7 6 0.00013 31.0 2.4 18 51-68 43-60 (181)
86 PRK14968 putative methyltransf 62.8 20 0.00043 27.0 5.1 18 52-69 25-42 (188)
87 PHA02734 coat protein; Provisi 61.3 5.9 0.00013 30.3 1.8 39 63-101 49-90 (149)
88 TIGR00080 pimt protein-L-isoas 61.1 12 0.00027 29.6 3.8 21 50-70 77-97 (215)
89 PRK11760 putative 23S rRNA C24 60.7 9.4 0.0002 33.8 3.2 40 30-69 186-230 (357)
90 PRK15068 tRNA mo(5)U34 methylt 60.7 5.2 0.00011 34.4 1.6 19 52-70 124-142 (322)
91 COG2518 Pcm Protein-L-isoaspar 59.7 24 0.00052 29.0 5.3 80 50-149 72-168 (209)
92 PLN02396 hexaprenyldihydroxybe 59.7 11 0.00024 32.6 3.5 19 51-69 132-150 (322)
93 TIGR03704 PrmC_rel_meth putati 59.6 11 0.00024 31.1 3.3 20 51-70 87-106 (251)
94 TIGR02081 metW methionine bios 59.3 6.4 0.00014 30.7 1.8 19 141-159 71-89 (194)
95 PRK10909 rsmD 16S rRNA m(2)G96 58.6 12 0.00026 30.1 3.3 19 52-70 55-73 (199)
96 TIGR03439 methyl_EasF probable 57.5 38 0.00083 29.3 6.5 38 35-73 62-99 (319)
97 TIGR00438 rrmJ cell division p 57.5 8 0.00017 30.0 2.1 21 50-70 32-52 (188)
98 PF05401 NodS: Nodulation prot 57.2 22 0.00049 29.0 4.7 47 49-99 42-100 (201)
99 PRK00377 cbiT cobalt-precorrin 57.1 8.1 0.00018 30.3 2.1 20 50-69 40-59 (198)
100 COG1189 Predicted rRNA methyla 56.7 12 0.00026 31.5 3.1 35 35-71 66-100 (245)
101 PRK03522 rumB 23S rRNA methylu 56.6 17 0.00036 30.9 4.1 19 52-70 175-193 (315)
102 PRK14896 ksgA 16S ribosomal RN 56.1 40 0.00086 27.7 6.1 47 51-101 30-88 (258)
103 TIGR00537 hemK_rel_arch HemK-r 55.7 6.7 0.00015 30.1 1.4 19 52-70 21-39 (179)
104 COG2263 Predicted RNA methylas 55.0 7.6 0.00017 31.7 1.6 53 52-109 47-112 (198)
105 PF03291 Pox_MCEL: mRNA cappin 54.9 28 0.00062 30.2 5.3 36 29-64 38-76 (331)
106 PF07021 MetW: Methionine bios 54.7 11 0.00024 30.6 2.5 21 51-79 14-34 (193)
107 TIGR00452 methyltransferase, p 53.7 7.8 0.00017 33.4 1.6 19 51-69 122-140 (314)
108 PRK14902 16S rRNA methyltransf 53.4 28 0.00061 31.0 5.1 20 52-71 252-271 (444)
109 COG4123 Predicted O-methyltran 52.8 15 0.00033 30.9 3.1 23 49-71 43-65 (248)
110 PRK09328 N5-glutamine S-adenos 52.7 8.2 0.00018 31.4 1.5 22 50-71 108-129 (275)
111 COG2264 PrmA Ribosomal protein 52.6 15 0.00033 31.7 3.2 20 50-69 162-181 (300)
112 PRK01544 bifunctional N5-gluta 52.4 16 0.00036 33.4 3.5 20 51-70 139-158 (506)
113 PRK13255 thiopurine S-methyltr 51.5 19 0.00042 29.1 3.5 38 31-71 21-58 (218)
114 PF06325 PrmA: Ribosomal prote 50.8 22 0.00047 30.5 3.8 19 52-70 163-181 (295)
115 TIGR00406 prmA ribosomal prote 50.7 9.1 0.0002 32.1 1.5 17 52-68 161-177 (288)
116 PRK13944 protein-L-isoaspartat 50.2 11 0.00023 30.0 1.7 20 51-70 73-92 (205)
117 COG2890 HemK Methylase of poly 50.1 14 0.00031 31.1 2.6 20 53-72 113-132 (280)
118 PRK00517 prmA ribosomal protei 49.4 8.2 0.00018 31.6 1.0 19 51-69 120-138 (250)
119 PTZ00338 dimethyladenosine tra 48.5 53 0.0011 27.9 5.8 51 51-102 37-99 (294)
120 PRK00811 spermidine synthase; 48.5 35 0.00076 28.6 4.7 23 48-70 74-96 (283)
121 TIGR03840 TMPT_Se_Te thiopurin 47.5 13 0.00027 30.1 1.8 37 32-71 19-55 (213)
122 TIGR00417 speE spermidine synt 47.0 49 0.0011 27.4 5.3 22 49-70 71-92 (270)
123 PF03514 GRAS: GRAS domain fam 46.8 90 0.0019 27.4 7.2 45 49-101 109-153 (374)
124 PF02390 Methyltransf_4: Putat 46.8 46 0.001 26.4 5.0 80 53-157 20-100 (195)
125 PRK14967 putative methyltransf 45.7 9.9 0.00021 30.4 0.9 20 51-70 37-56 (223)
126 PRK04148 hypothetical protein; 45.7 66 0.0014 24.5 5.4 45 50-103 16-73 (134)
127 PRK13942 protein-L-isoaspartat 45.4 28 0.00061 27.8 3.5 20 50-69 76-95 (212)
128 PRK14903 16S rRNA methyltransf 45.4 40 0.00087 30.2 4.8 20 52-71 239-258 (431)
129 PF13659 Methyltransf_26: Meth 43.9 21 0.00045 24.8 2.3 20 52-71 2-21 (117)
130 KOG3191 Predicted N6-DNA-methy 43.6 40 0.00088 27.6 4.1 39 32-73 28-66 (209)
131 PRK11705 cyclopropane fatty ac 43.5 23 0.00049 31.2 2.9 20 51-70 168-187 (383)
132 TIGR00095 RNA methyltransferas 43.5 32 0.0007 27.1 3.5 39 32-71 32-70 (189)
133 PRK09489 rsmC 16S ribosomal RN 43.2 15 0.00033 31.9 1.8 16 52-67 198-213 (342)
134 PRK01544 bifunctional N5-gluta 43.2 77 0.0017 29.0 6.4 107 23-157 323-429 (506)
135 PF08123 DOT1: Histone methyla 42.5 69 0.0015 25.9 5.4 55 51-105 43-118 (205)
136 PRK13168 rumA 23S rRNA m(5)U19 42.5 35 0.00076 30.4 4.0 19 52-70 299-317 (443)
137 PRK02289 4-oxalocrotonate taut 42.0 36 0.00078 21.7 3.0 40 62-102 11-51 (60)
138 PF08003 Methyltransf_9: Prote 41.6 15 0.00033 32.0 1.5 19 51-69 116-134 (315)
139 TIGR00755 ksgA dimethyladenosi 40.9 38 0.00083 27.6 3.7 49 51-103 30-90 (253)
140 PLN02232 ubiquinone biosynthes 39.8 19 0.00041 27.4 1.7 20 141-160 40-59 (160)
141 PLN03075 nicotianamine synthas 38.3 50 0.0011 28.4 4.1 21 50-70 123-143 (296)
142 PRK05134 bifunctional 3-demeth 36.5 63 0.0014 25.5 4.3 20 50-69 48-67 (233)
143 KOG4589 Cell division protein 35.3 48 0.001 27.4 3.3 21 50-70 69-89 (232)
144 PRK10901 16S rRNA methyltransf 35.0 28 0.00062 30.9 2.2 21 51-71 245-265 (427)
145 cd00491 4Oxalocrotonate_Tautom 33.7 1.1E+02 0.0025 18.6 4.5 43 59-102 7-50 (58)
146 TIGR02085 meth_trns_rumB 23S r 33.6 60 0.0013 28.3 4.0 20 52-71 235-254 (374)
147 COG1942 Uncharacterized protei 33.5 1.3E+02 0.0028 20.3 4.8 45 58-102 7-52 (69)
148 TIGR00479 rumA 23S rRNA (uraci 33.2 63 0.0014 28.5 4.1 20 51-70 293-312 (431)
149 PRK14904 16S rRNA methyltransf 33.1 32 0.00069 30.7 2.2 19 52-70 252-270 (445)
150 TIGR00446 nop2p NOL1/NOP2/sun 33.1 28 0.0006 28.8 1.7 20 51-70 72-91 (264)
151 PRK13943 protein-L-isoaspartat 33.0 47 0.001 28.7 3.2 20 51-70 81-100 (322)
152 PF05868 Rotavirus_VP7: Rotavi 32.9 22 0.00047 29.8 1.0 33 84-116 21-53 (249)
153 PRK14901 16S rRNA methyltransf 32.7 35 0.00077 30.3 2.4 20 51-70 253-272 (434)
154 TIGR01444 fkbM_fam methyltrans 32.7 23 0.00051 25.6 1.1 17 53-69 1-17 (143)
155 cd07945 DRE_TIM_CMS Leptospira 32.4 1.9E+02 0.004 24.4 6.7 29 50-79 131-159 (280)
156 PRK00745 4-oxalocrotonate taut 31.9 73 0.0016 19.9 3.3 44 59-103 8-52 (62)
157 PHA03411 putative methyltransf 31.4 31 0.00067 29.6 1.7 19 52-70 66-84 (279)
158 PHA01811 hypothetical protein 29.8 24 0.00051 24.0 0.6 11 88-98 60-70 (78)
159 cd07378 MPP_ACP5 Homo sapiens 29.7 1.4E+02 0.0029 24.2 5.3 40 52-98 4-43 (277)
160 PF03676 UPF0183: Uncharacteri 28.9 47 0.001 29.8 2.5 48 58-109 1-60 (394)
161 smart00400 ZnF_CHCC zinc finge 28.4 55 0.0012 20.5 2.2 21 52-72 22-42 (55)
162 PF06441 EHN: Epoxide hydrolas 28.0 30 0.00065 25.4 1.0 12 127-138 96-107 (112)
163 COG4976 Predicted methyltransf 26.9 33 0.00071 29.3 1.1 16 51-66 126-141 (287)
164 TIGR00563 rsmB ribosomal RNA s 26.8 41 0.00088 29.8 1.8 20 51-70 239-258 (426)
165 KOG1271 Methyltransferases [Ge 26.5 80 0.0017 26.1 3.2 33 29-63 48-80 (227)
166 KOG1500 Protein arginine N-met 25.9 70 0.0015 28.9 3.0 20 51-70 178-197 (517)
167 PF01361 Tautomerase: Tautomer 25.9 89 0.0019 19.5 2.8 45 57-102 5-50 (60)
168 COG1352 CheR Methylase of chem 25.9 2.1E+02 0.0045 24.2 5.8 43 50-98 96-138 (268)
169 KOG1541 Predicted protein carb 25.7 34 0.00074 29.0 1.0 21 140-160 107-127 (270)
170 PRK04457 spermidine synthase; 25.0 1.5E+02 0.0033 24.5 4.8 47 49-96 65-125 (262)
171 KOG1270 Methyltransferases [Co 24.5 95 0.0021 26.7 3.5 55 52-109 91-162 (282)
172 PF08436 DXP_redisom_C: 1-deox 24.3 62 0.0013 22.9 2.0 31 102-139 8-38 (84)
173 TIGR03488 cas_Cas5p CRISPR-ass 24.1 14 0.00029 30.0 -1.6 31 127-157 27-58 (237)
174 PF01739 CheR: CheR methyltran 23.6 1.6E+02 0.0035 23.5 4.6 45 49-99 30-74 (196)
175 PRK04338 N(2),N(2)-dimethylgua 23.3 96 0.0021 27.4 3.4 52 11-71 27-78 (382)
176 PLN02781 Probable caffeoyl-CoA 22.7 50 0.0011 26.9 1.5 21 50-70 68-88 (234)
177 PF04648 MF_alpha: Yeast matin 22.3 30 0.00066 16.2 0.0 7 155-161 1-7 (13)
178 PF04816 DUF633: Family of unk 22.1 47 0.001 26.8 1.2 16 54-69 1-16 (205)
179 PRK01964 4-oxalocrotonate taut 22.1 1.2E+02 0.0027 19.1 3.0 42 61-103 10-52 (64)
180 PF13362 Toprim_3: Toprim doma 21.5 2.1E+02 0.0046 19.4 4.3 52 49-109 42-93 (96)
181 PHA03412 putative methyltransf 21.5 39 0.00084 28.4 0.6 95 51-152 50-171 (241)
182 PLN02366 spermidine synthase 21.3 2.7E+02 0.0058 23.9 5.7 23 48-70 89-111 (308)
183 PF07757 AdoMet_MTase: Predict 21.2 50 0.0011 24.6 1.0 13 50-62 58-70 (112)
184 KOG1528 Salt-sensitive 3'-phos 21.2 1.3E+02 0.0028 26.5 3.7 42 18-59 3-51 (351)
185 PF09445 Methyltransf_15: RNA 21.2 56 0.0012 25.7 1.4 20 53-72 2-21 (163)
186 COG0293 FtsJ 23S rRNA methylas 21.1 76 0.0016 26.0 2.2 22 49-70 44-65 (205)
187 TIGR02727 MTHFS_bact 5,10-meth 20.9 37 0.00081 26.4 0.4 32 130-162 133-167 (181)
188 KOG3115 Methyltransferase-like 20.8 58 0.0013 27.3 1.4 16 51-66 61-76 (249)
189 KOG2361 Predicted methyltransf 20.1 85 0.0018 26.7 2.3 54 32-98 53-106 (264)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=9e-62 Score=423.41 Aligned_cols=163 Identities=38% Similarity=0.637 Sum_probs=146.1
Q ss_pred CcccceeeecCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCC-CceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 047472 1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVP-ESIGIADLGCSSGPNSLLVISEIMDIIHAR 79 (163)
Q Consensus 1 m~~~~~l~M~gG~G~~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~-~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~ 79 (163)
|+++++|||+||+|++||++||.+|++++.+++|+|++||++++....+ ++++|||||||+|+||+.+|++||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999754445 799999999999999999999999999999
Q ss_pred HhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhH--hh--hCCCCCceEEEeecCcccccccCCCceeEEeccchh
Q 047472 80 CRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQK--QE--KGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSL 155 (163)
Q Consensus 80 ~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~--~~--~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~al 155 (163)
|.+.++.+|||||||||||+||||+||++||.+.+... ++ ...+.++||++|||||||+||||++||||+||+|||
T Consensus 93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl 172 (386)
T PLN02668 93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSL 172 (386)
T ss_pred hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccc
Confidence 98877788999999999999999999999998765321 11 001123699999999999999999999999999999
Q ss_pred hcccCCCC
Q 047472 156 HWLSQVSM 163 (163)
Q Consensus 156 HWLS~vP~ 163 (163)
|||||||.
T Consensus 173 HWLS~vP~ 180 (386)
T PLN02668 173 HWLSQVPE 180 (386)
T ss_pred eecccCch
Confidence 99999994
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.1e-50 Score=348.40 Aligned_cols=123 Identities=56% Similarity=0.991 Sum_probs=100.2
Q ss_pred HHHHHHhhhhc-CCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCC-CCCCceEEEeCCCCCCchHHHHhhChhhh
Q 047472 36 IEEAILGILCE-KVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLD-RPSPEFRVSLNDLPGNDFNSIFETLPAFF 113 (163)
Q Consensus 36 l~~ai~~~~~~-~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~-~~~peiqv~~nDLP~NDFntLF~~l~~~~ 113 (163)
||+||++++.. ..+++++|||||||+|+||+.+|+.||++|+++|++.+ +++|||||||||||+||||+||++||.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 68999999864 47899999999999999999999999999999998776 78899999999999999999999999998
Q ss_pred hhhHhhhCCCCCceEEEeecCcccccccCCCceeEEeccchhhcccCCCC
Q 047472 114 KKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVSM 163 (163)
Q Consensus 114 ~~~~~~~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~vP~ 163 (163)
+++.+ .++||++|||||||+||||++||||+||++|||||||+|.
T Consensus 81 ~~~~~-----~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~ 125 (334)
T PF03492_consen 81 QSLKK-----FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPE 125 (334)
T ss_dssp HHHHH-----TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-C
T ss_pred hccCC-----CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCc
Confidence 87765 2689999999999999999999999999999999999994
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.60 E-value=0.00022 Score=56.49 Aligned_cols=107 Identities=16% Similarity=0.315 Sum_probs=66.6
Q ss_pred CchHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEe
Q 047472 15 ETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSL 94 (163)
Q Consensus 15 ~~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~ 94 (163)
..+|.+.+..|+.......+.+.... ..++.+|.|+||.+|..+..+. +. -|..++..
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~--------~~-------~~~~~~~~ 63 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALL--------KR-------FPQAEFIA 63 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHH--------Hh-------CCCCcEEE
Confidence 35788888888877666655554321 1335789999999997655332 22 13456777
Q ss_pred CCCCCCchHHHHhhChhhhhhhHhhhCCCCCc-eEEEeecCcccccccCCCceeEEeccchhhcccC
Q 047472 95 NDLPGNDFNSIFETLPAFFKKQKQEKGIGFGR-CYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 95 nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~-~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
-|......+..-+.++ ++ .| +-+.+-...+|+++.|++++..++||+..
T Consensus 64 ~D~~~~~~~~~~~~~~--------------~~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 64 LDISAGMLAQAKTKLS--------------ENVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred EeChHHHHHHHHHhcC--------------CCCeE---EecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 7864433322222221 12 22 33455566678999999999999999853
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.35 E-value=0.012 Score=47.94 Aligned_cols=101 Identities=19% Similarity=0.395 Sum_probs=56.7
Q ss_pred chHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeC
Q 047472 16 TSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLN 95 (163)
Q Consensus 16 ~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~n 95 (163)
..|.+++..|.+..... +. .+. ....-+|.|+||.+|..+..+. +++ |.-+|+-.
T Consensus 7 ~~Y~~~~~~~~~~~~~l---l~----~~~---~~~~~~vLDiGcG~G~~~~~la--------~~~-------~~~~v~gv 61 (258)
T PRK01683 7 SLYLKFEDERTRPARDL---LA----RVP---LENPRYVVDLGCGPGNSTELLV--------ERW-------PAARITGI 61 (258)
T ss_pred HHHHHHHHHhhcHHHHH---Hh----hCC---CcCCCEEEEEcccCCHHHHHHH--------HHC-------CCCEEEEE
Confidence 56888888776544322 22 111 1335689999999997665332 211 23567777
Q ss_pred CCCCCchHHHHhhChhhhhhhHhhhCCCCCc-eEEEeecCcccccccCCCceeEEeccchhhcccC
Q 047472 96 DLPGNDFNSIFETLPAFFKKQKQEKGIGFGR-CYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 96 DLP~NDFntLF~~l~~~~~~~~~~~~~~~~~-~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
|+... ..+.. .+. .++ -|.. +.+- .+.|.++.|+++|..++||+..
T Consensus 62 D~s~~----~i~~a-------~~~----~~~~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 62 DSSPA----MLAEA-------RSR----LPDCQFVE---ADIA-SWQPPQALDLIFANASLQWLPD 108 (258)
T ss_pred ECCHH----HHHHH-------HHh----CCCCeEEE---Cchh-ccCCCCCccEEEEccChhhCCC
Confidence 75431 11110 000 112 1222 2332 3457789999999999999854
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.17 E-value=0.02 Score=46.88 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=57.3
Q ss_pred chHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeC
Q 047472 16 TSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLN 95 (163)
Q Consensus 16 ~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~n 95 (163)
..|.+++..|.+.+...+. .+. ....-+|.|+||.+|..+. .+.++. |..+|+--
T Consensus 5 ~~y~~~~~~~~~~~~~ll~-------~l~---~~~~~~vLDlGcG~G~~~~--------~l~~~~-------p~~~v~gv 59 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLA-------RVG---AERARRVVDLGCGPGNLTR--------YLARRW-------PGAVIEAL 59 (255)
T ss_pred HHHHHHHhHhhCHHHHHHH-------hCC---CCCCCEEEEEcCCCCHHHH--------HHHHHC-------CCCEEEEE
Confidence 4688998888765543222 111 1334789999999995443 233321 33567777
Q ss_pred CCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEEeecCcccccccCCCceeEEeccchhhcccC
Q 047472 96 DLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 96 DLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
|+.. +.-... ++.+ --|+ -+.+ ..+.|.++.|+++|..++||+..
T Consensus 60 D~s~-~~~~~a-----------~~~~----~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 60 DSSP-EMVAAA-----------RERG----VDAR---TGDV-RDWKPKPDTDVVVSNAALQWVPE 104 (255)
T ss_pred ECCH-HHHHHH-----------HhcC----CcEE---EcCh-hhCCCCCCceEEEEehhhhhCCC
Confidence 7531 111111 1111 1122 2333 35667889999999999999864
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.17 E-value=0.027 Score=45.84 Aligned_cols=101 Identities=17% Similarity=0.298 Sum_probs=55.5
Q ss_pred chHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeC
Q 047472 16 TSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLN 95 (163)
Q Consensus 16 ~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~n 95 (163)
..|.+....|+.+.......+. ....-+|.|+||.+|..+..+ .+. ..+|+..
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~----------~~~~~~vLDiGcG~G~~~~~l--------~~~---------~~~v~~~ 70 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLP----------QRKFTHVLDAGCGPGWMSRYW--------RER---------GSQVTAL 70 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcC----------ccCCCeEEEeeCCCCHHHHHH--------HHc---------CCeEEEE
Confidence 3577766777766555433221 112457999999999765432 221 1456667
Q ss_pred CCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEEeecCcccccccCCCceeEEeccchhhcccC
Q 047472 96 DLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 96 DLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
|+.. ..+. ... +... ...|+. +..-.--+|+++.|+++|..++||...
T Consensus 71 D~s~-------~~l~----~a~-~~~~--~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d 118 (251)
T PRK10258 71 DLSP-------PMLA----QAR-QKDA--ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGN 118 (251)
T ss_pred ECCH-------HHHH----HHH-hhCC--CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCC
Confidence 7532 1111 011 1111 112332 233233468889999999999999754
No 7
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.54 E-value=0.092 Score=42.20 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=55.7
Q ss_pred CCchHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEE
Q 047472 14 GETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVS 93 (163)
Q Consensus 14 G~~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~ 93 (163)
|+. |.+....+.. +.....++.+++..+ ++.-+|.|+||.+|..+..+ .+. .|..+++
T Consensus 14 g~~-~~~rn~~~~~-~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L--------~~~-------~~~~~v~ 71 (204)
T TIGR03587 14 GKE-YIDRNSRQSL-VAAKLAMFARALNRL-----PKIASILELGANIGMNLAAL--------KRL-------LPFKHIY 71 (204)
T ss_pred cch-hhhccccHHH-HHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHH--------HHh-------CCCCeEE
Confidence 545 5555543322 334445566555543 33457999999999555433 221 0224455
Q ss_pred eCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEEeecCcccccccCCCceeEEeccchhhccc
Q 047472 94 LNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 94 ~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS 159 (163)
--|+... .+.. . ++.... ..+. .|+... -+|+++.|++++...||+++
T Consensus 72 giDiS~~-------~l~~----A-~~~~~~-~~~~----~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 72 GVEINEY-------AVEK----A-KAYLPN-INII----QGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred EEECCHH-------HHHH----H-HhhCCC-CcEE----EeeccC-CCCCCCEEEEEECChhhhCC
Confidence 5553221 1100 0 010000 1222 344444 67899999999999998774
No 8
>PRK06202 hypothetical protein; Provisional
Probab=94.93 E-value=0.37 Score=38.79 Aligned_cols=86 Identities=16% Similarity=0.229 Sum_probs=46.7
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceE
Q 047472 49 PESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCY 128 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f 128 (163)
.+..+|+|+||.+|..+..+ .+..++. .|..+|.--|+.. +.-...+. .... .+--+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L----~~~~~~~-------g~~~~v~gvD~s~-~~l~~a~~----------~~~~-~~~~~ 115 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDL----ARWARRD-------GLRLEVTAIDPDP-RAVAFARA----------NPRR-PGVTF 115 (232)
T ss_pred CCCcEEEEeccCCCHHHHHH----HHHHHhC-------CCCcEEEEEcCCH-HHHHHHHh----------cccc-CCCeE
Confidence 45679999999999876633 2222221 2346787778533 11111111 0000 01112
Q ss_pred EEeecCcccccccCCCceeEEeccchhhcccC
Q 047472 129 VSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 129 ~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
..+....+ -+++++.|+++++.+|||+..
T Consensus 116 ~~~~~~~l---~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 116 RQAVSDEL---VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred EEEecccc---cccCCCccEEEECCeeecCCh
Confidence 22222221 126789999999999999864
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.35 E-value=0.15 Score=35.69 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=32.2
Q ss_pred eEEEeecCCCCcccHHHHH--------------HHHHHHHHHHhcCCCCCCceEEEeCCC
Q 047472 52 IGIADLGCSSGPNSLLVIS--------------EIMDIIHARCRNLDRPSPEFRVSLNDL 97 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~--------------~ii~~i~~~~~~~~~~~peiqv~~nDL 97 (163)
-+|.|+||.+|..++.+.+ ..++..+++..+.+ ..+.+++...|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc
Confidence 4799999999999998888 56666766653322 224577777775
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.30 E-value=0.16 Score=42.30 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=51.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEE
Q 047472 50 ESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYV 129 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~ 129 (163)
+..+|.|+||-+|--|+ .+.+.. + +-+|..-| ||. ..|..-.++..+ .+..-+
T Consensus 51 ~g~~vLDva~GTGd~a~--------~~~k~~---g----~g~v~~~D-----~s~--~ML~~a~~k~~~-----~~~~~i 103 (238)
T COG2226 51 PGDKVLDVACGTGDMAL--------LLAKSV---G----TGEVVGLD-----ISE--SMLEVAREKLKK-----KGVQNV 103 (238)
T ss_pred CCCEEEEecCCccHHHH--------HHHHhc---C----CceEEEEE-----CCH--HHHHHHHHHhhc-----cCccce
Confidence 46899999999994444 444432 1 46666666 333 222221121111 111112
Q ss_pred EeecCcccccccCCCceeEEeccchhhcccCCC
Q 047472 130 SAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVS 162 (163)
Q Consensus 130 ~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~vP 162 (163)
.=|=|..-+=-||++|.|.+..+|+||++.+.+
T Consensus 104 ~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~ 136 (238)
T COG2226 104 EFVVGDAENLPFPDNSFDAVTISFGLRNVTDID 136 (238)
T ss_pred EEEEechhhCCCCCCccCEEEeeehhhcCCCHH
Confidence 224455555559999999999999999998754
No 11
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.26 E-value=0.041 Score=46.46 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.7
Q ss_pred cCCCceeEEeccchhhcccCCC
Q 047472 141 FPDKSLHFVHSSSSLHWLSQVS 162 (163)
Q Consensus 141 fP~~Svh~~~Ss~alHWLS~vP 162 (163)
|-++|+|++.||.++||....|
T Consensus 133 f~ens~DLiisSlslHW~NdLP 154 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLP 154 (325)
T ss_pred ccccchhhhhhhhhhhhhccCc
Confidence 7899999999999999998887
No 12
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=93.90 E-value=0.17 Score=42.21 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=17.0
Q ss_pred cCCCceeEEeccchhhccc
Q 047472 141 FPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 141 fP~~Svh~~~Ss~alHWLS 159 (163)
+|.++.|+++|.+.|||++
T Consensus 199 ~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred CccCCCCEEEechhHHhCC
Confidence 4688999999999999986
No 13
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.82 E-value=0.062 Score=39.70 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.6
Q ss_pred ccccCCCceeEEeccchhhcccC
Q 047472 138 DRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 138 ~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
...+|+++.|+++++.+|||+..
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSH
T ss_pred hhhccccchhhHhhHHHHhhccc
Confidence 44568899999999999999863
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=92.96 E-value=0.27 Score=39.18 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=45.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEE
Q 047472 51 SIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVS 130 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (163)
.-+|.|+||.+|..+..+.. .. .|..+|+--|+..+ .-...+ +... ..+ .+++ .
T Consensus 46 ~~~vLDiGcG~G~~~~~la~--------~~------~~~~~v~gvD~s~~-~~~~a~------~~~~-~~~--~~~v--~ 99 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAE--------AV------GPEGHVIGLDFSEN-MLSVGR------QKVK-DAG--LHNV--E 99 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHH--------Hh------CCCCEEEEEECCHH-HHHHHH------HHHH-hcC--CCce--E
Confidence 46899999999976552222 11 13356777775321 111111 1111 111 1222 1
Q ss_pred eecCcccccccCCCceeEEeccchhhcccC
Q 047472 131 AVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 131 ~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
-+.+....--+|+++.|++++.+++||++.
T Consensus 100 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~ 129 (231)
T TIGR02752 100 LVHGNAMELPFDDNSFDYVTIGFGLRNVPD 129 (231)
T ss_pred EEEechhcCCCCCCCccEEEEecccccCCC
Confidence 233444443468899999999999999754
No 15
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=92.51 E-value=0.82 Score=36.17 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=32.5
Q ss_pred CceEEEeecCCCCcccHHHH------------HHHHHHHHHHHhcCCCCCCceEEEeCCCCC
Q 047472 50 ESIGIADLGCSSGPNSLLVI------------SEIMDIIHARCRNLDRPSPEFRVSLNDLPG 99 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~------------~~ii~~i~~~~~~~~~~~peiqv~~nDLP~ 99 (163)
...+|.|+||.+|..+..+. ...++..+++....+.. ..+++...|++.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~ 123 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLES 123 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCchh
Confidence 35689999999999888776 45666666655433221 246666667654
No 16
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=92.43 E-value=0.62 Score=37.65 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=44.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEE
Q 047472 50 ESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYV 129 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~ 129 (163)
..-+|.|+||.+|..+..+...+ ..|..+++--|+..+ .=... .+... ..+.. .++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~~-ml~~a------~~~~~-~~~~~-~~v-- 108 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQP-MVERC------RQHIA-AYHSE-IPV-- 108 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCHH-HHHHH------HHHHH-hcCCC-CCe--
Confidence 34589999999997665443221 124577777785321 11111 11111 11110 122
Q ss_pred EeecCcccccccCCCceeEEeccchhhccc
Q 047472 130 SAVAGSFYDRLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 130 ~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS 159 (163)
.-+-|.+..--+| ..|++++.+++||++
T Consensus 109 ~~~~~d~~~~~~~--~~d~v~~~~~l~~~~ 136 (239)
T TIGR00740 109 EILCNDIRHVEIK--NASMVILNFTLQFLP 136 (239)
T ss_pred EEEECChhhCCCC--CCCEEeeecchhhCC
Confidence 2245566543333 478999999999985
No 17
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=92.20 E-value=0.24 Score=39.46 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHH
Q 047472 24 VQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLV 68 (163)
Q Consensus 24 ~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~ 68 (163)
+|+.+...-.|++-........-.....-+|.|+||.+|..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~l 58 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEM 58 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHH
Confidence 466666666666643333332211224578999999999776644
No 18
>PRK05785 hypothetical protein; Provisional
Probab=91.93 E-value=0.45 Score=38.71 Aligned_cols=27 Identities=44% Similarity=0.461 Sum_probs=21.2
Q ss_pred CcccccccCCCceeEEeccchhhcccC
Q 047472 134 GSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 134 gSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
+++-.-=||++|.|.++++++|||+..
T Consensus 99 ~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 99 GSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred echhhCCCCCCCEEEEEecChhhccCC
Confidence 344444478999999999999999765
No 19
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=91.86 E-value=0.5 Score=37.27 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=47.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEE
Q 047472 51 SIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVS 130 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (163)
..+|+|+||..|..+..+.... ++..+++.-|+..+=.. .. .+... ..+. ..++-
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~----~a---~~~~~-~~~~-~~~~~-- 106 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGMLA----VG---REKLR-DLGL-SGNVE-- 106 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHHH----HH---HHhhc-cccc-ccCeE--
Confidence 4789999999997665432211 12467777786432111 11 11000 0000 01221
Q ss_pred eecCcccccccCCCceeEEeccchhhcccC
Q 047472 131 AVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 131 ~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
-+-+++....++.++.|++++++.+|++..
T Consensus 107 ~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~ 136 (239)
T PRK00216 107 FVQGDAEALPFPDNSFDAVTIAFGLRNVPD 136 (239)
T ss_pred EEecccccCCCCCCCccEEEEecccccCCC
Confidence 123455555577889999999999998765
No 20
>PRK08317 hypothetical protein; Provisional
Probab=91.49 E-value=0.88 Score=35.58 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=19.7
Q ss_pred cccccccCCCceeEEeccchhhcccC
Q 047472 135 SFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 135 SFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
.+...-+++++.|++++..++||+..
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred ccccCCCCCCCceEEEEechhhccCC
Confidence 33333467889999999999998764
No 21
>PRK06922 hypothetical protein; Provisional
Probab=91.30 E-value=0.58 Score=44.49 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=43.6
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEE
Q 047472 51 SIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVS 130 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (163)
.-+|+|+||.+|..+. .+.+. .|..+|+--|+..+ .+........ ..+. .--++.
T Consensus 419 g~rVLDIGCGTG~ls~--------~LA~~-------~P~~kVtGIDIS~~-------MLe~Ararl~-~~g~--~ie~I~ 473 (677)
T PRK06922 419 GDTIVDVGAGGGVMLD--------MIEEE-------TEDKRIYGIDISEN-------VIDTLKKKKQ-NEGR--SWNVIK 473 (677)
T ss_pred CCEEEEeCCCCCHHHH--------HHHHh-------CCCCEEEEEECCHH-------HHHHHHHHhh-hcCC--CeEEEE
Confidence 4689999999995433 22222 13467777776542 1111111110 1111 112222
Q ss_pred eecCcccccccCCCceeEEeccchhhcc
Q 047472 131 AVAGSFYDRLFPDKSLHFVHSSSSLHWL 158 (163)
Q Consensus 131 ~vpgSFY~rlfP~~Svh~~~Ss~alHWL 158 (163)
+-... ....||++++|++++++.+||+
T Consensus 474 gDa~d-Lp~~fedeSFDvVVsn~vLH~L 500 (677)
T PRK06922 474 GDAIN-LSSSFEKESVDTIVYSSILHEL 500 (677)
T ss_pred cchHh-CccccCCCCEEEEEEchHHHhh
Confidence 21111 1234789999999999999975
No 22
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=91.26 E-value=0.65 Score=38.57 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=45.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceE
Q 047472 49 PESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCY 128 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f 128 (163)
+...+|.|+||..|..+..+. +.. ..+|+--|+..+-- ...+. .... ..++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~~~-~~a~~----------~~~~-~~~i- 101 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEKMV-NIAKL----------RNSD-KNKI- 101 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHHHH-HHHHH----------HcCc-CCce-
Confidence 345789999999998765442 110 14666667532111 11111 0010 0122
Q ss_pred EEeecCcccccccCCCceeEEeccchhhccc
Q 047472 129 VSAVAGSFYDRLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 129 ~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS 159 (163)
.-+.+++...-||+++.|++++..++++++
T Consensus 102 -~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~ 131 (263)
T PTZ00098 102 -EFEANDILKKDFPENTFDMIYSRDAILHLS 131 (263)
T ss_pred -EEEECCcccCCCCCCCeEEEEEhhhHHhCC
Confidence 223456666668899999999988876653
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=91.16 E-value=0.52 Score=35.29 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=15.4
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
+..+|.|+||.+|..++.+..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~ 23 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK 23 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHHH
Confidence 457899999999977765443
No 24
>PLN02244 tocopherol O-methyltransferase
Probab=91.10 E-value=2.3 Score=36.70 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=19.3
Q ss_pred CcccccccCCCceeEEeccchhhccc
Q 047472 134 GSFYDRLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 134 gSFY~rlfP~~Svh~~~Ss~alHWLS 159 (163)
+.+.+--||+++.|++++..++|++.
T Consensus 175 ~D~~~~~~~~~~FD~V~s~~~~~h~~ 200 (340)
T PLN02244 175 ADALNQPFEDGQFDLVWSMESGEHMP 200 (340)
T ss_pred cCcccCCCCCCCccEEEECCchhccC
Confidence 34444457888999999998888764
No 25
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=90.98 E-value=0.35 Score=39.02 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHH------------HHHHHHHHHHhcCCCCCCceEEEeCCC
Q 047472 30 STAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVIS------------EIMDIIHARCRNLDRPSPEFRVSLNDL 97 (163)
Q Consensus 30 ~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~peiqv~~nDL 97 (163)
..+.+.+.+|+.- -++-++.|+||..|+||+.+.+ ..|+.+++...+.+ . +|+...-|+
T Consensus 16 ~~~hs~v~~a~~~------~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~--l-~i~~~~~Dl 86 (192)
T PF03848_consen 16 TPTHSEVLEAVPL------LKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG--L-DIRTRVADL 86 (192)
T ss_dssp ----HHHHHHCTT------S-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BG
T ss_pred CCCcHHHHHHHhh------cCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC--c-eeEEEEecc
Confidence 3455666666532 2356899999999999998765 35555555443322 2 377777776
Q ss_pred CCCch
Q 047472 98 PGNDF 102 (163)
Q Consensus 98 P~NDF 102 (163)
..-+|
T Consensus 87 ~~~~~ 91 (192)
T PF03848_consen 87 NDFDF 91 (192)
T ss_dssp CCBS-
T ss_pred hhccc
Confidence 44333
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=90.66 E-value=2.7 Score=33.35 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHH------------HHHHHHHHHHhcCCCCCCceEEEeCCCCC
Q 047472 32 AKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVIS------------EIMDIIHARCRNLDRPSPEFRVSLNDLPG 99 (163)
Q Consensus 32 ~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~peiqv~~nDLP~ 99 (163)
..++.+..++.+.. ...+.-+|.|+||.+|..+..+.. ..|+..+++....+.. ..+++...|+..
T Consensus 38 ~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~ 115 (219)
T TIGR02021 38 RAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhh
Confidence 33444444443321 123467899999999998876653 3455555544322211 136677777543
Q ss_pred --CchH
Q 047472 100 --NDFN 103 (163)
Q Consensus 100 --NDFn 103 (163)
+.|.
T Consensus 116 ~~~~fD 121 (219)
T TIGR02021 116 LCGEFD 121 (219)
T ss_pred CCCCcC
Confidence 4455
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=90.42 E-value=0.34 Score=33.43 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=33.6
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEEeecC
Q 047472 55 ADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAG 134 (163)
Q Consensus 55 aDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpg 134 (163)
.|+||.+|..+..++... |..+++..|....=. ....+........ ..-.+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l-------~~a~~~~~~~~~~--~~~~~~~~~~ 56 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSML-------ERARERLAELGND--NFERLRFDVL 56 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTT-------STTCCCHHHCT-----EEEEE--SS
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHH-------HHHHHHhhhcCCc--ceeEEEeecC
Confidence 499999998776444332 457787778544211 1111111111000 1122233333
Q ss_pred cccccccCCCceeEEeccchhhccc
Q 047472 135 SFYDRLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 135 SFY~rlfP~~Svh~~~Ss~alHWLS 159 (163)
...... +.++.|+++++..|||+.
T Consensus 57 ~~~~~~-~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 57 DLFDYD-PPESFDLVVASNVLHHLE 80 (99)
T ss_dssp S---CC-C----SEEEEE-TTS--S
T ss_pred Chhhcc-cccccceehhhhhHhhhh
Confidence 332222 227999999999999994
No 28
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=90.12 E-value=0.88 Score=39.33 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHH--------------HHHHHHHHHhcCCCCCCceEEEeCCCC
Q 047472 33 KPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISE--------------IMDIIHARCRNLDRPSPEFRVSLNDLP 98 (163)
Q Consensus 33 ~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~--------------ii~~i~~~~~~~~~~~peiqv~~nDLP 98 (163)
-.+++..++++.....-+.-.|+|+||.+|.-|+.++.. +|....+.+++++-.- -|.|.++|..
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g-~i~v~~~~me 209 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSG-RIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcC-ceEEEecccc
Confidence 345555555554333333448999999999999987653 4555555555433222 4899988877
Q ss_pred CCchHHH
Q 047472 99 GNDFNSI 105 (163)
Q Consensus 99 ~NDFntL 105 (163)
+-=|+..
T Consensus 210 ~d~~~~~ 216 (328)
T KOG2904|consen 210 SDASDEH 216 (328)
T ss_pred ccccccc
Confidence 6655553
No 29
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=88.74 E-value=1.4 Score=35.43 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=15.5
Q ss_pred cCCCceeEEeccchhhcc
Q 047472 141 FPDKSLHFVHSSSSLHWL 158 (163)
Q Consensus 141 fP~~Svh~~~Ss~alHWL 158 (163)
++++++|+++|..+.||.
T Consensus 113 ~~~~~~D~V~S~~~~~~~ 130 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMS 130 (209)
T ss_pred hCCCCCCEEecCCCCccC
Confidence 577899999999988885
No 30
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=88.18 E-value=1.4 Score=38.42 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=43.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEE
Q 047472 51 SIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVS 130 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (163)
..+|.|+||.+|..++.+.. .. +..+|..-|+..+--. ..+.. . .. .++=
T Consensus 114 ~~~VLDLGcGtG~~~l~La~--------~~-------~~~~VtgVD~S~~mL~-~A~~k------~----~~--~~i~-- 163 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVK--------HV-------DAKNVTILDQSPHQLA-KAKQK------E----PL--KECK-- 163 (340)
T ss_pred CCEEEEEecCCcHHHHHHHH--------HC-------CCCEEEEEECCHHHHH-HHHHh------h----hc--cCCe--
Confidence 47899999999976653322 10 1245666675322111 11110 0 00 1111
Q ss_pred eecCcccccccCCCceeEEeccchhhccc
Q 047472 131 AVAGSFYDRLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 131 ~vpgSFY~rlfP~~Svh~~~Ss~alHWLS 159 (163)
-+.|....--||+++.|++++..++|++.
T Consensus 164 ~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 164 IIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred EEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 14455544446788999999999998764
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=88.11 E-value=1.1 Score=40.06 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=18.0
Q ss_pred cCCCceeEEeccchhhcccC
Q 047472 141 FPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 141 fP~~Svh~~~Ss~alHWLS~ 160 (163)
+|+++.|++++..++||++.
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~ 118 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD 118 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH
Confidence 68899999999999999863
No 32
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=88.06 E-value=0.93 Score=37.99 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=19.6
Q ss_pred cccCCCceeEEeccchhhcccC
Q 047472 139 RLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 139 rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
..-|+...|+++|.-+||||..
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpd 107 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPD 107 (257)
T ss_pred hcCCCCccchhhhhhhhhhccc
Confidence 5679999999999999999964
No 33
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=86.56 E-value=5.7 Score=33.30 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=45.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceE
Q 047472 49 PESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCY 128 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f 128 (163)
.+.-+|.|+||.+|.-++ .+.+++ |+.++..-|+|. ....... .. .+.|-. ++
T Consensus 148 ~~~~~vlDiG~G~G~~~~--------~~~~~~-------p~~~~~~~D~~~-----~~~~a~~---~~-~~~gl~-~r-- 200 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISA--------AMLKHF-------PELDSTILNLPG-----AIDLVNE---NA-AEKGVA-DR-- 200 (306)
T ss_pred CCCCEEEEeCCchhHHHH--------HHHHHC-------CCCEEEEEecHH-----HHHHHHH---HH-HhCCcc-ce--
Confidence 345699999999994333 222321 456777778752 1121111 11 111211 12
Q ss_pred EEeecCcccccccCCCceeEEeccchhhc
Q 047472 129 VSAVAGSFYDRLFPDKSLHFVHSSSSLHW 157 (163)
Q Consensus 129 ~~~vpgSFY~rlfP~~Svh~~~Ss~alHW 157 (163)
+..++|.|++.-+|.. |+++.+..+|-
T Consensus 201 v~~~~~d~~~~~~~~~--D~v~~~~~lh~ 227 (306)
T TIGR02716 201 MRGIAVDIYKESYPEA--DAVLFCRILYS 227 (306)
T ss_pred EEEEecCccCCCCCCC--CEEEeEhhhhc
Confidence 3457889997667763 88888888883
No 34
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=86.35 E-value=1.8 Score=38.65 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=15.8
Q ss_pred cccCCCceeEEeccchhhcc
Q 047472 139 RLFPDKSLHFVHSSSSLHWL 158 (163)
Q Consensus 139 rlfP~~Svh~~~Ss~alHWL 158 (163)
..||++++|.++..+...|-
T Consensus 186 ~~~~~~s~D~I~lnFPdPW~ 205 (390)
T PRK14121 186 ELLPSNSVEKIFVHFPVPWD 205 (390)
T ss_pred hhCCCCceeEEEEeCCCCcc
Confidence 46788888888888877774
No 35
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=86.25 E-value=3.4 Score=33.73 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=16.9
Q ss_pred CCceEEEeecCCCCcccHHHHH
Q 047472 49 PESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
+..-+|.|+||.+|.+++.+..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~ 76 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRR 76 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHH
Confidence 3446899999999998875443
No 36
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=86.05 E-value=5.8 Score=31.90 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=45.4
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceE
Q 047472 49 PESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCY 128 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f 128 (163)
++.-+|+|+|+.+|..+. ++.+++ |.+++..=|||.. ++...+ .++|-
T Consensus 99 ~~~~~vvDvGGG~G~~~~--------~l~~~~-------P~l~~~v~Dlp~v--------~~~~~~---------~~rv~ 146 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAI--------ALARAY-------PNLRATVFDLPEV--------IEQAKE---------ADRVE 146 (241)
T ss_dssp TTSSEEEEET-TTSHHHH--------HHHHHS-------TTSEEEEEE-HHH--------HCCHHH---------TTTEE
T ss_pred cCccEEEeccCcchHHHH--------HHHHHC-------CCCcceeeccHhh--------hhcccc---------ccccc
Confidence 344579999999995443 333332 6788888898742 222111 12443
Q ss_pred EEeecCcccccccCCCceeEEeccchhh
Q 047472 129 VSAVAGSFYDRLFPDKSLHFVHSSSSLH 156 (163)
Q Consensus 129 ~~~vpgSFY~rlfP~~Svh~~~Ss~alH 156 (163)
-+||.|+ .=+|. -|+++-++.||
T Consensus 147 --~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 147 --FVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp --EEES-TT-TCCSS--ESEEEEESSGG
T ss_pred --cccccHH-hhhcc--ccceeeehhhh
Confidence 3799999 77888 89999999998
No 37
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=85.29 E-value=1.6 Score=34.33 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=16.1
Q ss_pred cccCCCceeEEeccchhhccc
Q 047472 139 RLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 139 rlfP~~Svh~~~Ss~alHWLS 159 (163)
.++|.+++|.++..+..+|-.
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k 101 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPK 101 (194)
T ss_pred hhCCCCceeEEEEECCCcCCC
Confidence 456777899998888888854
No 38
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=85.17 E-value=0.65 Score=39.23 Aligned_cols=17 Identities=18% Similarity=0.765 Sum_probs=15.8
Q ss_pred CCCceeEEeccchhhcc
Q 047472 142 PDKSLHFVHSSSSLHWL 158 (163)
Q Consensus 142 P~~Svh~~~Ss~alHWL 158 (163)
+++|||++.+.-|+||.
T Consensus 97 ~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF 113 (261)
T ss_pred CCcceeeehhhhhHHhh
Confidence 48999999999999996
No 39
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=84.92 E-value=2.5 Score=37.66 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=23.3
Q ss_pred ecCcccccccCCCceeEEeccchhhcccC
Q 047472 132 VAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 132 vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
+-+.+....+|+++.|+++|..+++|+..
T Consensus 319 ~~~d~~~~~~~~~~fD~I~s~~~l~h~~d 347 (475)
T PLN02336 319 EVADCTKKTYPDNSFDVIYSRDTILHIQD 347 (475)
T ss_pred EEcCcccCCCCCCCEEEEEECCcccccCC
Confidence 34566666789999999999999998754
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=84.58 E-value=5.4 Score=30.92 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=46.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEE
Q 047472 50 ESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYV 129 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~ 129 (163)
...+|.|+||..|..+..+.... ++..+++.-|.... ....... .. . ...++-+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~--------------~~~~~~~~iD~~~~----~~~~~~~---~~----~-~~~~i~~ 92 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA--------------PDRGKVTGVDFSSE----MLEVAKK---KS----E-LPLNIEF 92 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc--------------CCCceEEEEECCHH----HHHHHHH---Hh----c-cCCCceE
Confidence 45789999999997666442211 11246666675221 1111110 00 0 0012221
Q ss_pred EeecCcccccccCCCceeEEeccchhhcccC
Q 047472 130 SAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 130 ~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
+.+.+.+..+++++.|++++++.+|+...
T Consensus 93 --~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 121 (223)
T TIGR01934 93 --IQADAEALPFEDNSFDAVTIAFGLRNVTD 121 (223)
T ss_pred --EecchhcCCCCCCcEEEEEEeeeeCCccc
Confidence 23555555578889999999999998754
No 41
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=84.04 E-value=4.3 Score=33.62 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.9
Q ss_pred cCCCceeEEeccchhhcccC
Q 047472 141 FPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 141 fP~~Svh~~~Ss~alHWLS~ 160 (163)
||++|.|++++++++||+..
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d 160 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVD 160 (261)
T ss_pred CCCCCEeEEEEecccccCCC
Confidence 78899999999999999753
No 42
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=83.55 E-value=10 Score=29.02 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|+|+||-+|.-++.+..
T Consensus 32 ~~~vLDlG~G~G~i~~~la~ 51 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAK 51 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHH
T ss_pred CCeEEEecCChHHHHHHHHH
Confidence 45699999999987776554
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=82.72 E-value=2.4 Score=35.47 Aligned_cols=44 Identities=25% Similarity=0.408 Sum_probs=28.2
Q ss_pred eEEEeecCCCCcccHHHHH------------HHHHHHHHHHhcCCCCCCceEEEeCCCC
Q 047472 52 IGIADLGCSSGPNSLLVIS------------EIMDIIHARCRNLDRPSPEFRVSLNDLP 98 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~peiqv~~nDLP 98 (163)
-+|.|+||.+|.|++.+.. ..|+.+++.....+. .+++..-|+.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~ 177 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDIN 177 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechh
Confidence 3899999999999997764 445555554432221 3555555553
No 44
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=81.63 E-value=1.3 Score=29.34 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=21.6
Q ss_pred ecCcccccccCCCceeEEeccchhhcc
Q 047472 132 VAGSFYDRLFPDKSLHFVHSSSSLHWL 158 (163)
Q Consensus 132 vpgSFY~rlfP~~Svh~~~Ss~alHWL 158 (163)
+-+++..--||++|+|++++..++||+
T Consensus 47 ~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 47 RQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred eeehHHhCccccccccccccccceeec
Confidence 455677678999999999999999998
No 45
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=80.95 E-value=2.5 Score=33.38 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=27.7
Q ss_pred EEEeecCCCCcccHHHHHHH--------------HHHHHHHHhcCCCCCCceEEEeCCCC
Q 047472 53 GIADLGCSSGPNSLLVISEI--------------MDIIHARCRNLDRPSPEFRVSLNDLP 98 (163)
Q Consensus 53 ~IaDlGCS~G~Nsl~~~~~i--------------i~~i~~~~~~~~~~~peiqv~~nDLP 98 (163)
+|.|+||..|..+..+.... ++..++++.+.+.. ..++++..|..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~ 60 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSA 60 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccc
Confidence 58999999999887665532 34444444333222 24677766653
No 46
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=80.71 E-value=3.9 Score=33.08 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhhcC--CCCceEEEeecCCCCcccHHHH--------------HHHHHHHHHHHhcCCCCCCceEEEeCCC
Q 047472 34 PAIEEAILGILCEK--VPESIGIADLGCSSGPNSLLVI--------------SEIMDIIHARCRNLDRPSPEFRVSLNDL 97 (163)
Q Consensus 34 p~l~~ai~~~~~~~--~~~~~~IaDlGCS~G~Nsl~~~--------------~~ii~~i~~~~~~~~~~~peiqv~~nDL 97 (163)
|+-++.|+.+..+. ..+--++.|.||-+|.-|+..+ .+.++.+++.+.+.+ .+-++|.--|-
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~n~~vv~g~A 93 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VDNLEVVEGDA 93 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CCcEEEEeccc
Confidence 45556666654332 2233589999999999999887 457888888887776 34467766654
Q ss_pred C
Q 047472 98 P 98 (163)
Q Consensus 98 P 98 (163)
|
T Consensus 94 p 94 (187)
T COG2242 94 P 94 (187)
T ss_pred h
Confidence 4
No 47
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=80.62 E-value=1.3 Score=31.02 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.2
Q ss_pred ceEEEeecCCCCcccHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~ 69 (163)
.-+|.|+||..|..+..+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~ 38 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAA 38 (124)
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 3489999999998777554
No 48
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=79.84 E-value=2.2 Score=32.81 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHH
Q 047472 35 AIEEAILGILCEKVPESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 35 ~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~ 69 (163)
-|.|+.++...-...+..+++|+|||.|+-|-.++
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~ 42 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLL 42 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHH
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCcccceeeeee
Confidence 35555555432222367999999999997665443
No 49
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=79.73 E-value=2.2 Score=34.84 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=16.3
Q ss_pred CCceEEEeecCCCCcccHHHH
Q 047472 49 PESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~ 69 (163)
+++.+|.|+||..|..++.+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la 63 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLA 63 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHH
Confidence 345799999999998776543
No 50
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=79.24 E-value=2.6 Score=35.61 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHH
Q 047472 34 PAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEI 72 (163)
Q Consensus 34 p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~i 72 (163)
.+|++...++.... +...+|.||||.+|.-|..+++..
T Consensus 48 ~il~~~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 48 AILERHADEIAAAT-GAGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred HHHHHHHHHHHHhh-CCCCeEEecCCCcchhHHHHHHhh
Confidence 44555555553322 334689999999999998777664
No 51
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=79.18 E-value=10 Score=30.11 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=17.3
Q ss_pred CCceEEEeecCCCCcccHHHH
Q 047472 49 PESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~ 69 (163)
+...+|.|+||.+|..++.+.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHH
Confidence 346789999999998888665
No 52
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=79.08 E-value=4.7 Score=33.08 Aligned_cols=84 Identities=26% Similarity=0.350 Sum_probs=37.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCce-E
Q 047472 50 ESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRC-Y 128 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~-f 128 (163)
...+|.|+||.+|-.|+. +.++ -.|..+|+--|. +. .-|..-.++..+ .+ ..+| |
T Consensus 47 ~g~~vLDv~~GtG~~~~~--------l~~~------~~~~~~v~~vD~-----s~--~ML~~a~~k~~~-~~--~~~i~~ 102 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRE--------LARR------VGPNGKVVGVDI-----SP--GMLEVARKKLKR-EG--LQNIEF 102 (233)
T ss_dssp S--EEEEET-TTSHHHHH--------HGGG------SS---EEEEEES------H--HHHHHHHHHHHH-TT----SEEE
T ss_pred CCCEEEEeCCChHHHHHH--------HHHH------CCCccEEEEecC-----CH--HHHHHHHHHHHh-hC--CCCeeE
Confidence 356999999999955442 2222 123456666663 22 111111111111 11 1243 3
Q ss_pred EEeecCcccccccCCCceeEEeccchhhcccC
Q 047472 129 VSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 129 ~~~vpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 160 (163)
+. |..-.==||++|.|.+.+++++|-+..
T Consensus 103 v~---~da~~lp~~d~sfD~v~~~fglrn~~d 131 (233)
T PF01209_consen 103 VQ---GDAEDLPFPDNSFDAVTCSFGLRNFPD 131 (233)
T ss_dssp EE----BTTB--S-TT-EEEEEEES-GGG-SS
T ss_pred EE---cCHHHhcCCCCceeEEEHHhhHHhhCC
Confidence 33 444433489999999999999998754
No 53
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=78.07 E-value=8.9 Score=32.26 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=17.7
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
+.+|+|+||.+|..++.+...
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~ 142 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYA 142 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHH
Confidence 468999999999998877753
No 54
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=77.54 E-value=5.6 Score=32.60 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=19.9
Q ss_pred cCcccccccCCCceeEEeccchhhccc
Q 047472 133 AGSFYDRLFPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 133 pgSFY~rlfP~~Svh~~~Ss~alHWLS 159 (163)
.|.+-.--+|++++|++++...+||..
T Consensus 134 ~~d~~~l~~~~~~fD~Vi~~~v~~~~~ 160 (272)
T PRK11873 134 LGEIEALPVADNSVDVIISNCVINLSP 160 (272)
T ss_pred EcchhhCCCCCCceeEEEEcCcccCCC
Confidence 344443336788999999999999864
No 55
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=76.49 E-value=3.7 Score=34.17 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=33.9
Q ss_pred ceEEEeecCCCCcccHHHHH------------HHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS------------EIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNS 104 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFnt 104 (163)
.-+|.|+||.+|.-|..+.. ..++.+++... . +.+++...|...-++..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~----~-~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA----E-DNLTIIEGDALKVDLSE 103 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc----c-CceEEEEChhhcCCHHH
Confidence 35799999999999988776 34444444321 1 45888888876666654
No 56
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=76.37 E-value=3.2 Score=34.24 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHH
Q 047472 35 AIEEAILGILCEKVPESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 35 ~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
-|+++++.... ..+.-+++|+||++|.-|..+..
T Consensus 62 kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 62 KLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred HHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHH
Confidence 35555554432 12346899999999988775544
No 57
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=76.01 E-value=1.8 Score=34.18 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
+.+|.|+||.+|.+++.+..
T Consensus 31 ~~~vLDiGcG~G~~a~~la~ 50 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL 50 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH
Confidence 46899999999999987653
No 58
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=75.91 E-value=2 Score=33.27 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.0
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
..-+|.|+||.+|.-++.+..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~ 51 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAAL 51 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHH
Confidence 446899999999998886654
No 59
>PRK07402 precorrin-6B methylase; Provisional
Probab=75.03 E-value=7.6 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.1
Q ss_pred ceEEEeecCCCCcccHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~ 69 (163)
.-+|.|+||.+|..++.+.
T Consensus 41 ~~~VLDiG~G~G~~~~~la 59 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAG 59 (196)
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 3589999999999988664
No 60
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=73.34 E-value=2.8 Score=34.67 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=11.0
Q ss_pred CCCceEEEeecCCCCccc
Q 047472 48 VPESIGIADLGCSSGPNS 65 (163)
Q Consensus 48 ~~~~~~IaDlGCS~G~Ns 65 (163)
.|+..+|||+||.++.-+
T Consensus 70 ~~~~~viaD~GCGdA~la 87 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA 87 (219)
T ss_dssp S-TTS-EEEES-TT-HHH
T ss_pred cCCCEEEEECCCchHHHH
Confidence 466799999999999443
No 61
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=72.85 E-value=2.2 Score=29.56 Aligned_cols=81 Identities=31% Similarity=0.359 Sum_probs=36.9
Q ss_pred EEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEEeec
Q 047472 54 IADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVA 133 (163)
Q Consensus 54 IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~~vp 133 (163)
|.|+||-+|..+..+... . + ..|+.++..-|+-..= |....+... +.+ ..--|+.+-.
T Consensus 1 ILDlgcG~G~~~~~l~~~----~-~-------~~~~~~~~gvD~s~~~-------l~~~~~~~~-~~~--~~~~~~~~D~ 58 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR----F-D-------AGPSSRVIGVDISPEM-------LELAKKRFS-EDG--PKVRFVQADA 58 (101)
T ss_dssp -EEET-TTSHHHHHHHHH----S-------------SEEEEEES-HHH-------HHHHHHHSH-HTT--TTSEEEESCT
T ss_pred CEEeecCCcHHHHHHHHH----h-h-------hcccceEEEEECCHHH-------HHHHHHhch-hcC--CceEEEECCH
Confidence 789999999877755443 2 1 1134666666643211 111111110 101 1123333322
Q ss_pred CcccccccCCCceeEEeccch-hhccc
Q 047472 134 GSFYDRLFPDKSLHFVHSSSS-LHWLS 159 (163)
Q Consensus 134 gSFY~rlfP~~Svh~~~Ss~a-lHWLS 159 (163)
.. . -++.++.|+++++.+ +|+++
T Consensus 59 ~~-l--~~~~~~~D~v~~~~~~~~~~~ 82 (101)
T PF13649_consen 59 RD-L--PFSDGKFDLVVCSGLSLHHLS 82 (101)
T ss_dssp TC-H--HHHSSSEEEEEE-TTGGGGSS
T ss_pred hH-C--cccCCCeeEEEEcCCccCCCC
Confidence 22 1 246778899999766 88776
No 62
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=72.82 E-value=2.3 Score=33.61 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||..|.+++.+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~ 50 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA 50 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH
Confidence 36899999999999986653
No 63
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=72.80 E-value=12 Score=32.19 Aligned_cols=58 Identities=21% Similarity=0.401 Sum_probs=39.2
Q ss_pred CCceEEEeecCCCCcccHHHHHHH-------------HHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhC
Q 047472 49 PESIGIADLGCSSGPNSLLVISEI-------------MDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETL 109 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~i-------------i~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l 109 (163)
..-.++.|+||.-|..++..+... .+..+++-.+.|.+. .++|.+-|. +||+.-|..+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~-~v~v~l~d~--rd~~e~fDrI 141 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLED-NVEVRLQDY--RDFEEPFDRI 141 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCc-ccEEEeccc--ccccccccee
Confidence 335899999999999999888875 233344333345443 388988885 4566556655
No 64
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=72.69 E-value=4.9 Score=33.24 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=16.5
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
..-+|.|+||.+|..+..+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~ 105 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALAD 105 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHH
Confidence 346799999999988776554
No 65
>PF12570 DUF3750: Protein of unknown function (DUF3750); InterPro: IPR022224 This family of proteins is found in bacteria. Proteins in this family are typically between 175 and 265 amino acids in length.
Probab=71.40 E-value=8.1 Score=29.44 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHH
Q 047472 26 SKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIH 77 (163)
Q Consensus 26 ~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~ 77 (163)
-...+++.|.||+||+...-. . +|=-=-||||-.++.-|++.+.
T Consensus 70 G~~A~~lIpkIe~ai~~YP~~---~-----~Yr~wPGPNSNTFvawV~r~vp 113 (128)
T PF12570_consen 70 GEEAEALIPKIEAAIASYPYA---N-----DYRAWPGPNSNTFVAWVLRQVP 113 (128)
T ss_pred CHHHHHHHHHHHHHHHhCCCc---C-----cceecCCCChHHHHHHHHhhCc
Confidence 345677899999999876321 1 6666789999999999986653
No 66
>PRK04266 fibrillarin; Provisional
Probab=70.49 E-value=2.8 Score=34.29 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.1
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
.-+|+|+||.+|..++.+...
T Consensus 73 g~~VlD~G~G~G~~~~~la~~ 93 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDI 93 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHh
Confidence 468999999999988866543
No 67
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=70.31 E-value=20 Score=28.20 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=15.9
Q ss_pred CceEEEeecCCCCcccHHH
Q 047472 50 ESIGIADLGCSSGPNSLLV 68 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~ 68 (163)
...+|.|+||.+|..|..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 4578999999999998743
No 68
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=69.64 E-value=18 Score=30.16 Aligned_cols=20 Identities=40% Similarity=0.482 Sum_probs=16.8
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ 71 (163)
.+|.|+||.+|.-++.+...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~ 135 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE 135 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH
Confidence 58999999999988877653
No 69
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=69.42 E-value=8.5 Score=28.69 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHH
Q 047472 29 ISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 29 i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
|.....++.+.++... ....+.+|+|+||-.|.-|..+..
T Consensus 6 i~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 6 IERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHH
Confidence 3445555665555431 235678999999999987775544
No 70
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=69.25 E-value=16 Score=30.68 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=30.2
Q ss_pred ceEEEeecCCCCcccHHHHHH-------------HHHHHHHHHhcCCCCCCceEEEeCCC
Q 047472 51 SIGIADLGCSSGPNSLLVISE-------------IMDIIHARCRNLDRPSPEFRVSLNDL 97 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~-------------ii~~i~~~~~~~~~~~peiqv~~nDL 97 (163)
--+|.|+||.-|..++.+... -.+.++++..+.+-. ..++|.+-|-
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~-~~v~v~~~D~ 121 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE-DRVEVRLQDY 121 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS-STEEEEES-G
T ss_pred CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEeec
Confidence 468999999999999988877 244555555555432 2477887774
No 71
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=69.07 E-value=17 Score=31.57 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCC
Q 047472 32 AKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLND 96 (163)
Q Consensus 32 ~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nD 96 (163)
...+|++||..+.. ..++++|.|+=|-+|+ .|++++.+. ...| .+|.++|
T Consensus 119 l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GR-------YvlDal~~~-----~~~~-~~i~LrD 168 (311)
T PF12147_consen 119 LEELIRQAIARLRE--QGRPVRILDIAAGHGR-------YVLDALEKH-----PERP-DSILLRD 168 (311)
T ss_pred HHHHHHHHHHHHHh--cCCceEEEEeccCCcH-------HHHHHHHhC-----CCCC-ceEEEEe
Confidence 34455555555533 3678999999999996 467777654 1113 4777777
No 72
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=68.89 E-value=4.4 Score=34.96 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=33.8
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHH----HHHHHH---Hh--c--CCCCCCceEEEeCCCCCCchHHHHhhCh
Q 047472 48 VPESIGIADLGCSSGPNSLLVISEIM----DIIHAR---CR--N--LDRPSPEFRVSLNDLPGNDFNSIFETLP 110 (163)
Q Consensus 48 ~~~~~~IaDlGCS~G~Nsl~~~~~ii----~~i~~~---~~--~--~~~~~peiqv~~nDLP~NDFntLF~~l~ 110 (163)
.++.+.|||+||..+.-+...-..|. -++.++ |- + +....-+|-||-=-|=+.|++..++...
T Consensus 178 r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~ 251 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEAN 251 (325)
T ss_pred CcCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHH
Confidence 47899999999999976641111111 000000 10 0 1122335666666677777777666544
No 73
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=68.27 E-value=2.5 Score=27.34 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=12.9
Q ss_pred EEEeecCCCCcccHHH
Q 047472 53 GIADLGCSSGPNSLLV 68 (163)
Q Consensus 53 ~IaDlGCS~G~Nsl~~ 68 (163)
+|+|+||..|..+..+
T Consensus 1 ~ildig~G~G~~~~~~ 16 (107)
T cd02440 1 RVLDLGCGTGALALAL 16 (107)
T ss_pred CeEEEcCCccHHHHHH
Confidence 4899999999876544
No 74
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=68.20 E-value=10 Score=28.89 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=17.6
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ 71 (163)
-+|.|+||..|..|..+++.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CEEEEECCCccHHHHHHHhc
Confidence 47999999999999988765
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=67.83 E-value=6.8 Score=30.77 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.9
Q ss_pred CCceEEEeecCCCCcccHHHH
Q 047472 49 PESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~ 69 (163)
.+..+|.|+||.+|..+..+.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~ 64 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLA 64 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHH
Confidence 346789999999998877654
No 76
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=66.45 E-value=3.7 Score=34.60 Aligned_cols=44 Identities=30% Similarity=0.347 Sum_probs=26.9
Q ss_pred chHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcc
Q 047472 16 TSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPN 64 (163)
Q Consensus 16 ~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~N 64 (163)
.-|+.||++|..- .++.+.|++-+... .+++--|.|+||-+|--
T Consensus 21 ~kYt~nsri~~IQ----~em~eRaLELLalp-~~~~~~iLDIGCGsGLS 64 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQ----AEMAERALELLALP-GPKSGLILDIGCGSGLS 64 (270)
T ss_pred hhccccceeeeeh----HHHHHHHHHHhhCC-CCCCcEEEEeccCCCcc
Confidence 4588999874322 23444444433221 23578899999999943
No 77
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=66.45 E-value=16 Score=33.04 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=21.8
Q ss_pred HHHHHHhhhhcCCC--CceEEEeecCCCCcccHHHHHH
Q 047472 36 IEEAILGILCEKVP--ESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 36 l~~ai~~~~~~~~~--~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
|++|+.+....... +..+|.|.||..|+-+...++.
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A 207 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQA 207 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHT
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHH
Confidence 44455554332211 3689999999999998776654
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=65.20 E-value=9.6 Score=32.98 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.6
Q ss_pred eEEEeecCCCCcccHHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISEI 72 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~i 72 (163)
-+|+|+||--|+-++.+.+.-
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~ 180 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKS 180 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhC
Confidence 389999999998887665543
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=65.14 E-value=5.9 Score=31.60 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=16.9
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
+..+|.|+||.+|..++.+..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~ 107 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAK 107 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHH
Confidence 346899999999988776654
No 80
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=64.98 E-value=19 Score=30.68 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=16.9
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ 71 (163)
.+|.|+||.+|..++.+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~ 154 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA 154 (307)
T ss_pred CEEEEEechhhHHHHHHHHH
Confidence 58999999999988877653
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=64.54 E-value=14 Score=32.80 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=14.8
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|.|+||.+|.-++.+.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~ 248 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLD 248 (378)
T ss_pred CeEEEEeccccHHHHHHHH
Confidence 3899999999976665443
No 82
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=64.37 E-value=21 Score=32.34 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=28.8
Q ss_pred eEEEeecCCCCcccHHHHH--------------HHHHHHHHHHhcCCCCCCceEEEeCCCC
Q 047472 52 IGIADLGCSSGPNSLLVIS--------------EIMDIIHARCRNLDRPSPEFRVSLNDLP 98 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~--------------~ii~~i~~~~~~~~~~~peiqv~~nDLP 98 (163)
-+|.|+||.+|..++.+.. ..++..++...+.+ ..+++...|+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~ 310 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWF 310 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchh
Confidence 4899999999999886653 34455555443332 14777777763
No 83
>PTZ00146 fibrillarin; Provisional
Probab=64.05 E-value=5 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=16.4
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
-.+|+||||++|..|..+.+.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdi 153 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDL 153 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHH
Confidence 368999999999987755443
No 84
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=64.00 E-value=10 Score=32.67 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=17.8
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
..+|.|+||.+|..++.+...
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~ 165 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE 165 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC
Confidence 468999999999999877653
No 85
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=63.65 E-value=6 Score=31.04 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.3
Q ss_pred ceEEEeecCCCCcccHHH
Q 047472 51 SIGIADLGCSSGPNSLLV 68 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~ 68 (163)
..+|.|+||.+|..++.+
T Consensus 43 ~~~vLDiGcGtG~~s~~l 60 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPL 60 (181)
T ss_pred CCeEEEecCCCCccHHHH
Confidence 468999999999888754
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=62.82 E-value=20 Score=27.01 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.2
Q ss_pred eEEEeecCCCCcccHHHH
Q 047472 52 IGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~ 69 (163)
-+|.|+||.+|..++.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~ 42 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAA 42 (188)
T ss_pred CEEEEEccccCHHHHHHH
Confidence 479999999999877654
No 87
>PHA02734 coat protein; Provisional
Probab=61.27 E-value=5.9 Score=30.28 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHh---cCCCCCCceEEEeCCCCCCc
Q 047472 63 PNSLLVISEIMDIIHARCR---NLDRPSPEFRVSLNDLPGND 101 (163)
Q Consensus 63 ~Nsl~~~~~ii~~i~~~~~---~~~~~~peiqv~~nDLP~ND 101 (163)
.|+-.++-+||++|++..+ ..|..--|.+|||+..|.|-
T Consensus 49 e~~k~aIHeiIK~IreA~kp~rn~g~gfkeawvyfsqvpena 90 (149)
T PHA02734 49 ANAKAAIHAIIKMIKDAMKPLRNKGKGFKEAWVYFSQVPENA 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCchhHHHHhhhcCcccC
Confidence 4667899999999999864 23444568899999999885
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=61.13 E-value=12 Score=29.64 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=17.0
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
..-+|.|+||.+|..|..+..
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~ 97 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAE 97 (215)
T ss_pred CcCEEEEECCCccHHHHHHHH
Confidence 346899999999999985544
No 89
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=60.70 E-value=9.4 Score=33.81 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhhc-----CCCCceEEEeecCCCCcccHHHH
Q 047472 30 STAKPAIEEAILGILCE-----KVPESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 30 ~~~~p~l~~ai~~~~~~-----~~~~~~~IaDlGCS~G~Nsl~~~ 69 (163)
+++.-.|++|+...... ....-.++.|+|||.|.-|-.++
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHH
Confidence 34455688887765432 12345789999999998886554
No 90
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=60.66 E-value=5.2 Score=34.36 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=15.6
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|+|+||.+|..++.+..
T Consensus 124 ~~VLDIGCG~G~~~~~la~ 142 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLG 142 (322)
T ss_pred CEEEEeccCCcHHHHHHHH
Confidence 5899999999988875543
No 91
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.66 E-value=24 Score=28.97 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=49.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHH---------H----HHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhh
Q 047472 50 ESIGIADLGCSSGPNSLLVISEIMD---------I----IHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQ 116 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ii~---------~----i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~ 116 (163)
..-+|.++||-||.+|- ++++++. . -+++...++-. .+.|.+.|-- +-++.
T Consensus 72 ~g~~VLEIGtGsGY~aA-vla~l~~~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~--------~G~~~----- 135 (209)
T COG2518 72 PGDRVLEIGTGSGYQAA-VLARLVGRVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGS--------KGWPE----- 135 (209)
T ss_pred CCCeEEEECCCchHHHH-HHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCcc--------cCCCC-----
Confidence 35889999999999998 4444433 2 22222233332 3888888821 12221
Q ss_pred HhhhCCCCCceEEEe----ecCcccccccCCCceeEE
Q 047472 117 KQEKGIGFGRCYVSA----VAGSFYDRLFPDKSLHFV 149 (163)
Q Consensus 117 ~~~~~~~~~~~f~~~----vpgSFY~rlfP~~Svh~~ 149 (163)
...++.|++.| +|-++.+||-|.+-+=+-
T Consensus 136 ----~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 136 ----EAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIP 168 (209)
T ss_pred ----CCCcCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence 12245677776 889999999887755443
No 92
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=59.66 E-value=11 Score=32.56 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=15.1
Q ss_pred ceEEEeecCCCCcccHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~ 69 (163)
..+|.|+||..|..+..+.
T Consensus 132 g~~ILDIGCG~G~~s~~La 150 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLA 150 (322)
T ss_pred CCEEEEeeCCCCHHHHHHH
Confidence 4689999999998776443
No 93
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=59.56 E-value=11 Score=31.11 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
..+|.|+||.+|.-++.+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred CCEEEEecCchHHHHHHHHH
Confidence 46899999999998887664
No 94
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=59.26 E-value=6.4 Score=30.67 Aligned_cols=19 Identities=42% Similarity=0.620 Sum_probs=14.0
Q ss_pred cCCCceeEEeccchhhccc
Q 047472 141 FPDKSLHFVHSSSSLHWLS 159 (163)
Q Consensus 141 fP~~Svh~~~Ss~alHWLS 159 (163)
+|+++.|++++..++||+.
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATR 89 (194)
T ss_pred cCCCCcCEEEEhhHhHcCc
Confidence 5667778888877777764
No 95
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=58.56 E-value=12 Score=30.09 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=16.2
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-++.|+||-+|.-++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 4899999999999986654
No 96
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=57.54 E-value=38 Score=29.33 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHH
Q 047472 35 AIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIM 73 (163)
Q Consensus 35 ~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii 73 (163)
+|++-..++... .+...+|.||||.+|.-+-.+++.+.
T Consensus 62 iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 62 ILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred HHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHHH
Confidence 344444444322 24456899999999999887777764
No 97
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=57.49 E-value=8 Score=29.96 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=15.5
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
+.-+|+|+||.+|.-+..+..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~ 52 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVE 52 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHH
Confidence 346899999999976654443
No 98
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=57.16 E-value=22 Score=29.03 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=29.3
Q ss_pred CCceEEEeecCCCCcccHHHH------------HHHHHHHHHHHhcCCCCCCceEEEeCCCCC
Q 047472 49 PESIGIADLGCSSGPNSLLVI------------SEIMDIIHARCRNLDRPSPEFRVSLNDLPG 99 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~------------~~ii~~i~~~~~~~~~~~peiqv~~nDLP~ 99 (163)
+.--++.|+|||.|-.|..+. ...|+.-++++. ..|.+++..-|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~ 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVPE 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCC
Confidence 456779999999998887553 456666666642 33567777777654
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=57.05 E-value=8.1 Score=30.29 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.0
Q ss_pred CceEEEeecCCCCcccHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~ 69 (163)
..-+|+|+||.+|.-++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 34689999999998887543
No 100
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=56.68 E-value=12 Score=31.52 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHH
Q 047472 35 AIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 35 ~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
-|++|++.... ..+--++.|+|.|+|+-|-.+++.
T Consensus 66 KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 66 KLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHc
Confidence 46777776543 345678999999999999877665
No 101
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=56.64 E-value=17 Score=30.90 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.7
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|.|+||.+|..++.+.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CEEEEccCCCCHHHHHHHh
Confidence 5799999999999987764
No 102
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=56.06 E-value=40 Score=27.73 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=31.0
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHHhcCCCCCCceEEEeCCCCCCc
Q 047472 51 SIGIADLGCSSGPNSLLVISE------------IMDIIHARCRNLDRPSPEFRVSLNDLPGND 101 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~------------ii~~i~~~~~~~~~~~peiqv~~nDLP~ND 101 (163)
.-+|.|+||..|.-|..+... .++.++++... .+.+.++..|.-.-|
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVD 88 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCC
Confidence 357999999999999988764 45555554321 234777766654433
No 103
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=55.74 E-value=6.7 Score=30.09 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=15.8
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|+|+||.+|..++.+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~ 39 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKG 39 (179)
T ss_pred CeEEEeCCChhHHHHHHHh
Confidence 4799999999998876654
No 104
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.04 E-value=7.6 Score=31.68 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=34.6
Q ss_pred eEEEeecCCCCcccHHHH-------------HHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhC
Q 047472 52 IGIADLGCSSGPNSLLVI-------------SEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETL 109 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~-------------~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l 109 (163)
-+|+||||-+|.-++... .+.+++.++.+.+++ -++.++-.|. -||+.-|...
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv--~~~~~~~dtv 112 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADV--SDFRGKFDTV 112 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcch--hhcCCccceE
Confidence 469999999999888543 467778877765432 2356666664 3555555543
No 105
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=54.94 E-value=28 Score=30.19 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhhhcC---CCCceEEEeecCCCCcc
Q 047472 29 ISTAKPAIEEAILGILCEK---VPESIGIADLGCSSGPN 64 (163)
Q Consensus 29 i~~~~p~l~~ai~~~~~~~---~~~~~~IaDlGCS~G~N 64 (163)
+...--|++..+-..+... .....+|.||||.-|+=
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGD 76 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGD 76 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTT
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchh
Confidence 3334445555554444332 12679999999999974
No 106
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=54.73 E-value=11 Score=30.59 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVISEIMDIIHAR 79 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~ 79 (163)
--+|.||||..| .++..+++.
T Consensus 14 gsrVLDLGCGdG--------~LL~~L~~~ 34 (193)
T PF07021_consen 14 GSRVLDLGCGDG--------ELLAYLKDE 34 (193)
T ss_pred CCEEEecCCCch--------HHHHHHHHh
Confidence 378999999999 455555553
No 107
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=53.73 E-value=7.8 Score=33.41 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=15.3
Q ss_pred ceEEEeecCCCCcccHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~ 69 (163)
.-+|+|+||.+|..++.++
T Consensus 122 g~~VLDvGCG~G~~~~~~~ 140 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRML 140 (314)
T ss_pred CCEEEEeccCCcHHHHHHH
Confidence 4689999999998776544
No 108
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=53.37 E-value=28 Score=31.00 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=17.2
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ 71 (163)
-+|.|+||++|.-|+.+...
T Consensus 252 ~~VLDlgaG~G~~t~~la~~ 271 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAEL 271 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHH
Confidence 57999999999999877654
No 109
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=52.79 E-value=15 Score=30.88 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.0
Q ss_pred CCceEEEeecCCCCcccHHHHHH
Q 047472 49 PESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
+..-+|+|+||-.|.-+|.+.+.
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhcc
Confidence 34789999999999999988776
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=52.75 E-value=8.2 Score=31.40 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=17.8
Q ss_pred CceEEEeecCCCCcccHHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
+..+|.|+||.+|..++.+...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~ 129 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKE 129 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHH
Confidence 4568999999999988876654
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=52.64 E-value=15 Score=31.73 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=16.2
Q ss_pred CceEEEeecCCCCcccHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~ 69 (163)
+.-++.|+||-||--|+...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 45789999999998877544
No 112
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=52.40 E-value=16 Score=33.38 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
..+|.|+||.+|..++.+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CCEEEEccCchhHHHHHHHH
Confidence 46899999999998886654
No 113
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=51.48 E-value=19 Score=29.14 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHH
Q 047472 31 TAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 31 ~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
...|.|.+.+..+.. ++.-+|.|.||-.|+|++.+.+.
T Consensus 21 ~p~~~L~~~~~~~~~---~~~~rvL~~gCG~G~da~~LA~~ 58 (218)
T PRK13255 21 EVNPLLQKYWPALAL---PAGSRVLVPLCGKSLDMLWLAEQ 58 (218)
T ss_pred CCCHHHHHHHHhhCC---CCCCeEEEeCCCChHhHHHHHhC
Confidence 355666666554322 23458999999999999977654
No 114
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=50.77 E-value=22 Score=30.49 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=14.6
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|.|+||-||--++....
T Consensus 163 ~~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp SEEEEES-TTSHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHHH
Confidence 4899999999988876554
No 115
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=50.73 E-value=9.1 Score=32.12 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.1
Q ss_pred eEEEeecCCCCcccHHH
Q 047472 52 IGIADLGCSSGPNSLLV 68 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~ 68 (163)
-+|.|+||.+|..++.+
T Consensus 161 ~~VLDvGcGsG~lai~a 177 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAA 177 (288)
T ss_pred CEEEEeCCChhHHHHHH
Confidence 68999999999776644
No 116
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=50.18 E-value=11 Score=29.96 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||.+|..+..+..
T Consensus 73 ~~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred CCEEEEECcCccHHHHHHHH
Confidence 36899999999998865543
No 117
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=50.14 E-value=14 Score=31.13 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=16.9
Q ss_pred EEEeecCCCCcccHHHHHHH
Q 047472 53 GIADLGCSSGPNSLLVISEI 72 (163)
Q Consensus 53 ~IaDlGCS~G~Nsl~~~~~i 72 (163)
+|.|+||.||.-++.+..+.
T Consensus 113 ~ilDlGTGSG~iai~la~~~ 132 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG 132 (280)
T ss_pred cEEEecCChHHHHHHHHhhC
Confidence 89999999998888766655
No 118
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=49.40 E-value=8.2 Score=31.58 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=14.9
Q ss_pred ceEEEeecCCCCcccHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~ 69 (163)
.-+|.|+||.+|..++.+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~ 138 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAA 138 (250)
T ss_pred CCEEEEeCCcHHHHHHHHH
Confidence 4689999999997776443
No 119
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=48.54 E-value=53 Score=27.94 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=34.3
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHHhcCCCCCCceEEEeCCCCCCch
Q 047472 51 SIGIADLGCSSGPNSLLVISE------------IMDIIHARCRNLDRPSPEFRVSLNDLPGNDF 102 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~------------ii~~i~~~~~~~~~~~peiqv~~nDLP~NDF 102 (163)
.-+|.|+||..|.-|..++.. .++.++++....+. .+.++++..|....|+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTEF 99 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhcc
Confidence 357999999999999877753 45666665432221 2358888887765554
No 120
>PRK00811 spermidine synthase; Provisional
Probab=48.51 E-value=35 Score=28.62 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=18.4
Q ss_pred CCCceEEEeecCCCCcccHHHHH
Q 047472 48 VPESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 48 ~~~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.+++-+|.|+||..|..+..+++
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~ 96 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLK 96 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHc
Confidence 35567899999999988876655
No 121
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=47.49 E-value=13 Score=30.12 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHH
Q 047472 32 AKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 32 ~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
..|.|.+-+..+. .+..-+|.|+||-.|+|++.+.+.
T Consensus 19 p~~~l~~~~~~l~---~~~~~rvLd~GCG~G~da~~LA~~ 55 (213)
T TIGR03840 19 VNPLLVKHWPALG---LPAGARVFVPLCGKSLDLAWLAEQ 55 (213)
T ss_pred CCHHHHHHHHhhC---CCCCCeEEEeCCCchhHHHHHHhC
Confidence 3445555444332 123358999999999999977654
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=47.05 E-value=49 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=16.8
Q ss_pred CCceEEEeecCCCCcccHHHHH
Q 047472 49 PESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
+++-+|.|+||.+|..+..+++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~ 92 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLK 92 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHh
Confidence 4455999999999987765543
No 123
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=46.82 E-value=90 Score=27.42 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=35.3
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCc
Q 047472 49 PESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGND 101 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~ND 101 (163)
.+.+.|.|||...| .-+-.+|+++.++. ..+|.+.+.--+.|...
T Consensus 109 ~~~vHIID~~i~~G----~QW~~LiqaLa~R~----~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 109 ERRVHIIDFGIGFG----VQWPSLIQALASRP----GGPPSLRITGIGPPNSG 153 (374)
T ss_pred CcceEEEeccCCcc----hHHHHHHHHHhcCC----CCCCeEEEEeccCCCCC
Confidence 46799999999999 36677888887652 45778999999987654
No 124
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=46.76 E-value=46 Score=26.40 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=42.6
Q ss_pred EEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEE-e
Q 047472 53 GIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVS-A 131 (163)
Q Consensus 53 ~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~-~ 131 (163)
.+.|+||..|...+ .+.+. .|+..++--|.-.+ .+.+.+.. .... +..|+.+. +
T Consensus 20 l~lEIG~G~G~~l~--------~~A~~-------~Pd~n~iGiE~~~~---~v~~a~~~----~~~~---~l~Nv~~~~~ 74 (195)
T PF02390_consen 20 LILEIGCGKGEFLI--------ELAKR-------NPDINFIGIEIRKK---RVAKALRK----AEKR---GLKNVRFLRG 74 (195)
T ss_dssp EEEEET-TTSHHHH--------HHHHH-------STTSEEEEEES-HH---HHHHHHHH----HHHH---TTSSEEEEES
T ss_pred eEEEecCCCCHHHH--------HHHHH-------CCCCCEEEEecchH---HHHHHHHH----HHhh---cccceEEEEc
Confidence 89999999995433 22222 25667766664332 22222211 1111 23565554 4
Q ss_pred ecCcccccccCCCceeEEeccchhhc
Q 047472 132 VAGSFYDRLFPDKSLHFVHSSSSLHW 157 (163)
Q Consensus 132 vpgSFY~rlfP~~Svh~~~Ss~alHW 157 (163)
-...+...++|++||+-++=.+-=-|
T Consensus 75 da~~~l~~~~~~~~v~~i~i~FPDPW 100 (195)
T PF02390_consen 75 DARELLRRLFPPGSVDRIYINFPDPW 100 (195)
T ss_dssp -CTTHHHHHSTTTSEEEEEEES----
T ss_pred cHHHHHhhcccCCchheEEEeCCCCC
Confidence 55666788999999998886665444
No 125
>PRK14967 putative methyltransferase; Provisional
Probab=45.74 E-value=9.9 Score=30.39 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.0
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||.+|..++.+..
T Consensus 37 ~~~vLDlGcG~G~~~~~la~ 56 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA 56 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH
Confidence 35899999999998876544
No 126
>PRK04148 hypothetical protein; Provisional
Probab=45.73 E-value=66 Score=24.50 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=29.0
Q ss_pred CceEEEeecCCCCc-ccHHHHH------------HHHHHHHHHHhcCCCCCCceEEEeCCCCCCchH
Q 047472 50 ESIGIADLGCSSGP-NSLLVIS------------EIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFN 103 (163)
Q Consensus 50 ~~~~IaDlGCS~G~-Nsl~~~~------------~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFn 103 (163)
+..+|+|.||..|. -+..+.+ ..++..++. -++++..|+...|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHH
Confidence 34789999999996 4433332 222222221 268889999998886
No 127
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=45.45 E-value=28 Score=27.75 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=16.3
Q ss_pred CceEEEeecCCCCcccHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~ 69 (163)
..-+|.|+||.+|..|..+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CcCEEEEECCcccHHHHHHH
Confidence 34689999999999997554
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=45.35 E-value=40 Score=30.16 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=16.8
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ 71 (163)
-+|.|+||+.|.-|+.+...
T Consensus 239 ~~VLD~cagpGgkt~~la~~ 258 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAEL 258 (431)
T ss_pred CEEEEeCCCccHHHHHHHHH
Confidence 57999999999999876654
No 129
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=43.87 E-value=21 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=16.2
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ 71 (163)
.+|.|+||-+|.-++.+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~ 21 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR 21 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH
T ss_pred CEEEEcCcchHHHHHHHHHH
Confidence 58999999999877766654
No 130
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=43.64 E-value=40 Score=27.62 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHH
Q 047472 32 AKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIM 73 (163)
Q Consensus 32 ~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii 73 (163)
.++.||++..++... .+--.+++||.||--|-.+.+.+.
T Consensus 28 LlDaLekd~~eL~~~---~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 28 LLDALEKDAAELKGH---NPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHHHhhc---CceeEEEecCCcchHHHHHHHhcC
Confidence 456677777766432 256689999999977766666655
No 131
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=43.53 E-value=23 Score=31.23 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||..|..++.+..
T Consensus 168 g~rVLDIGcG~G~~a~~la~ 187 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAE 187 (383)
T ss_pred CCEEEEeCCCccHHHHHHHH
Confidence 46899999999999886665
No 132
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=43.48 E-value=32 Score=27.10 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHH
Q 047472 32 AKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 32 ~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
+...+.+|+-++...... --++.|++|.+|.-++.+++.
T Consensus 32 t~~~vrea~f~~l~~~~~-g~~vLDLfaGsG~lglea~sr 70 (189)
T TIGR00095 32 TTRVVRELFFNILRPEIQ-GAHLLDVFAGSGLLGEEALSR 70 (189)
T ss_pred chHHHHHHHHHHHHHhcC-CCEEEEecCCCcHHHHHHHhC
Confidence 344555555544322112 357999999999999988763
No 133
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=43.24 E-value=15 Score=31.88 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=12.7
Q ss_pred eEEEeecCCCCcccHH
Q 047472 52 IGIADLGCSSGPNSLL 67 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~ 67 (163)
-+|+|+||..|..++.
T Consensus 198 g~VLDlGCG~G~ls~~ 213 (342)
T PRK09489 198 GKVLDVGCGAGVLSAV 213 (342)
T ss_pred CeEEEeccCcCHHHHH
Confidence 3799999999975543
No 134
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=43.24 E-value=77 Score=29.04 Aligned_cols=107 Identities=11% Similarity=0.053 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCch
Q 047472 23 TVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDF 102 (163)
Q Consensus 23 ~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDF 102 (163)
..|+..++...|.+.=..+.+.. .+.-.+.|+||..|...+. +.+. .|+.-++--|.-.
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~--------~A~~-------~p~~~~iGiE~~~--- 381 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFIN--------QAKM-------NPDALFIGVEVYL--- 381 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHH--------HHHh-------CCCCCEEEEEeeH---
Confidence 37888888877766533333321 2346789999999954442 2221 2444444444322
Q ss_pred HHHHhhChhhhhhhHhhhCCCCCceEEEeecCcccccccCCCceeEEeccchhhc
Q 047472 103 NSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHW 157 (163)
Q Consensus 103 ntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHW 157 (163)
+.+-+.+.. . ...+..|+.+..---.+..+.||++||+-+|-.+.=-|
T Consensus 382 ~~~~~~~~~----~---~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW 429 (506)
T PRK01544 382 NGVANVLKL----A---GEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW 429 (506)
T ss_pred HHHHHHHHH----H---HHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC
Confidence 222222221 1 11123465543323334567889999998888777666
No 135
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=42.49 E-value=69 Score=25.86 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=32.2
Q ss_pred ceEEEeecCCCCcccHHHH---------------------HHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHH
Q 047472 51 SIGIADLGCSSGPNSLLVI---------------------SEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSI 105 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~---------------------~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntL 105 (163)
.-++.||||-.|.-.+.+. ....+.+++++...+....++++..-|.-.+||...
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 4589999999998655322 223334444444456566789999999888887543
No 136
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=42.48 E-value=35 Score=30.40 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.5
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|.|+||.+|.-++.+..
T Consensus 299 ~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CEEEEEeccCCHHHHHHHH
Confidence 5899999999999987664
No 137
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=41.97 E-value=36 Score=21.68 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=25.1
Q ss_pred CcccHHHHHHHHHHHHHHHhc-CCCCCCceEEEeCCCCCCch
Q 047472 62 GPNSLLVISEIMDIIHARCRN-LDRPSPEFRVSLNDLPGNDF 102 (163)
Q Consensus 62 G~Nsl~~~~~ii~~i~~~~~~-~~~~~peiqv~~nDLP~NDF 102 (163)
|+ |-.--.++++.|.+...+ .+.++..+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhhe
Confidence 54 555556666666555432 45555579999999775443
No 138
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=41.57 E-value=15 Score=31.99 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=15.3
Q ss_pred ceEEEeecCCCCcccHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~ 69 (163)
--+|+|+||..|.-++.+.
T Consensus 116 gk~VLDIGC~nGY~~frM~ 134 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRML 134 (315)
T ss_pred CCEEEEecCCCcHHHHHHh
Confidence 3589999999998877544
No 139
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=40.88 E-value=38 Score=27.60 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=30.5
Q ss_pred ceEEEeecCCCCcccHHHHHH------------HHHHHHHHHhcCCCCCCceEEEeCCCCCCchH
Q 047472 51 SIGIADLGCSSGPNSLLVISE------------IMDIIHARCRNLDRPSPEFRVSLNDLPGNDFN 103 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~------------ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFn 103 (163)
.-+|.|+||..|.-|..+... .++.+++.+. ..+.+++...|.-.-++.
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~----~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS----LYERLEVIEGDALKVDLP 90 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC----cCCcEEEEECchhcCChh
Confidence 468999999999988877652 3333333321 124577777776554443
No 140
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=39.83 E-value=19 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=17.6
Q ss_pred cCCCceeEEeccchhhcccC
Q 047472 141 FPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 141 fP~~Svh~~~Ss~alHWLS~ 160 (163)
+++++.|++.+.+++||+..
T Consensus 40 ~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred CCCCCeeEEEecchhhcCCC
Confidence 67889999999999999753
No 141
>PLN03075 nicotianamine synthase; Provisional
Probab=38.25 E-value=50 Score=28.42 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=16.0
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.+=+|+|+||..||-|...+.
T Consensus 123 ~p~~VldIGcGpgpltaiila 143 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLA 143 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHH
Confidence 457799999999987665443
No 142
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=36.55 E-value=63 Score=25.50 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=15.6
Q ss_pred CceEEEeecCCCCcccHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVI 69 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~ 69 (163)
...+|.|+||..|..+..+.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~ 67 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA 67 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH
Confidence 35689999999998776554
No 143
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=35.30 E-value=48 Score=27.43 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=15.8
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.--+|.|.|||-|.=|-.+++
T Consensus 69 p~~~VlD~G~APGsWsQVavq 89 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQ 89 (232)
T ss_pred CCCEEEEccCCCChHHHHHHH
Confidence 357899999999966654443
No 144
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=34.95 E-value=28 Score=30.88 Aligned_cols=21 Identities=10% Similarity=0.155 Sum_probs=17.2
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
.-+|.|+||++|.-|+.+...
T Consensus 245 g~~VLDlgaG~G~~t~~la~~ 265 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILEL 265 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHH
Confidence 357999999999998876653
No 145
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=33.72 E-value=1.1e+02 Score=18.56 Aligned_cols=43 Identities=14% Similarity=0.323 Sum_probs=29.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCCCCCceEEEeCCCCCCch
Q 047472 59 CSSGPNSLLVISEIMDIIHARCRN-LDRPSPEFRVSLNDLPGNDF 102 (163)
Q Consensus 59 CS~G~Nsl~~~~~ii~~i~~~~~~-~~~~~peiqv~~nDLP~NDF 102 (163)
+..|+ +-.--.+++++|.+...+ .+.++..+.|.++|.|..||
T Consensus 7 ~~~gr-t~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~ 50 (58)
T cd00491 7 ILEGR-TDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENW 50 (58)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhc
Confidence 34576 466666777777665432 45566679999999887665
No 146
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=33.56 E-value=60 Score=28.33 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=17.0
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ 71 (163)
-+|+|+||-+|.-++.+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred CEEEEccCCccHHHHHHhhc
Confidence 47999999999999977654
No 147
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=33.54 E-value=1.3e+02 Score=20.26 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=26.9
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHh-cCCCCCCceEEEeCCCCCCch
Q 047472 58 GCSSGPNSLLVISEIMDIIHARCR-NLDRPSPEFRVSLNDLPGNDF 102 (163)
Q Consensus 58 GCS~G~Nsl~~~~~ii~~i~~~~~-~~~~~~peiqv~~nDLP~NDF 102 (163)
=|..|..+-..=.++++.|-+... -+|.++.-+.|+++|.|-.||
T Consensus 7 k~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~w 52 (69)
T COG1942 7 KLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPENW 52 (69)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhhe
Confidence 344566666534444444433321 256666679999999887665
No 148
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=33.22 E-value=63 Score=28.50 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||.+|.-++.+..
T Consensus 293 ~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHH
Confidence 35799999999999987654
No 149
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=33.11 E-value=32 Score=30.75 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.0
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|.|+||++|..|+.+..
T Consensus 252 ~~VLDlgaG~G~kt~~la~ 270 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAE 270 (445)
T ss_pred CEEEEECCCCCHHHHHHHH
Confidence 5799999999999876554
No 150
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=33.10 E-value=28 Score=28.80 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||+.|.-|+.+..
T Consensus 72 g~~VLDl~ag~G~kt~~la~ 91 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISA 91 (264)
T ss_pred cCEEEEECCCchHHHHHHHH
Confidence 35799999999999986654
No 151
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=32.95 E-value=47 Score=28.71 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=16.9
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||.+|..++.+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCEEEEEeCCccHHHHHHHH
Confidence 46899999999999987654
No 152
>PF05868 Rotavirus_VP7: Rotavirus major outer capsid protein VP7; InterPro: IPR008818 This family consists of several Rotavirus major outer capsid protein VP7 sequences. The rotavirus capsid is composed of three concentric protein layers. Proteins VP4 and VP7 comprise the outer layer. VP4 forms spikes and is the viral attachment protein. VP7 is a glycoprotein and the major constituent of the outer protein layer [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=32.88 E-value=22 Score=29.85 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=27.1
Q ss_pred CCCCCceEEEeCCCCCCchHHHHhhChhhhhhh
Q 047472 84 DRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQ 116 (163)
Q Consensus 84 ~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~ 116 (163)
....||+.|.+.|-.++|||..+.++-.+.+++
T Consensus 21 ps~~peiCilY~~d~~~~~~~~~~nft~ife~y 53 (249)
T PF05868_consen 21 PSTSPEICILYADDFGTDANQFNGNFTNIFESY 53 (249)
T ss_pred cCCCCcEEEEEcCcchhhHHHhcccHHHHHHhc
Confidence 346799999999999999998888887765554
No 153
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=32.70 E-value=35 Score=30.34 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||+.|..|+.+..
T Consensus 253 g~~VLDl~ag~G~kt~~la~ 272 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAE 272 (434)
T ss_pred cCEEEEeCCCCchhHHHHHH
Confidence 35799999999999986654
No 154
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=32.65 E-value=23 Score=25.58 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.7
Q ss_pred EEEeecCCCCcccHHHH
Q 047472 53 GIADLGCSSGPNSLLVI 69 (163)
Q Consensus 53 ~IaDlGCS~G~Nsl~~~ 69 (163)
+|.|+||..|.-++.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 48999999998877554
No 155
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=32.43 E-value=1.9e+02 Score=24.39 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=21.1
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVISEIMDIIHAR 79 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~ 79 (163)
-.+.+.|+||+. +.+...+.++++.+.+.
T Consensus 131 v~~~~~d~~~~~-r~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 131 VNIYLEDWSNGM-RDSPDYVFQLVDFLSDL 159 (280)
T ss_pred EEEEEEeCCCCC-cCCHHHHHHHHHHHHHc
Confidence 368889999987 56677777777766553
No 156
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=31.89 E-value=73 Score=19.93 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=28.0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCCCCCCceEEEeCCCCCCchH
Q 047472 59 CSSGPNSLLVISEIMDIIHARCR-NLDRPSPEFRVSLNDLPGNDFN 103 (163)
Q Consensus 59 CS~G~Nsl~~~~~ii~~i~~~~~-~~~~~~peiqv~~nDLP~NDFn 103 (163)
|..|+ |-..-.++++.|.+... ..+.++-.+.|.+++.|..||.
T Consensus 8 ~~~gr-s~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~ 52 (62)
T PRK00745 8 LFEGR-TVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWA 52 (62)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHee
Confidence 45576 66666666666666433 3455555689989887766654
No 157
>PHA03411 putative methyltransferase; Provisional
Probab=31.36 E-value=31 Score=29.56 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=15.4
Q ss_pred eEEEeecCCCCcccHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~ 70 (163)
-+|+|+||.+|..++.+..
T Consensus 66 grVLDLGcGsGilsl~la~ 84 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLH 84 (279)
T ss_pred CeEEEcCCCCCHHHHHHHH
Confidence 4799999999987776544
No 158
>PHA01811 hypothetical protein
Probab=29.77 E-value=24 Score=23.99 Aligned_cols=11 Identities=36% Similarity=0.410 Sum_probs=9.1
Q ss_pred CceEEEeCCCC
Q 047472 88 PEFRVSLNDLP 98 (163)
Q Consensus 88 peiqv~~nDLP 98 (163)
..+|||+|||-
T Consensus 60 k~iqvyyndll 70 (78)
T PHA01811 60 KTIQVYYNDLL 70 (78)
T ss_pred eEEEEEeeeee
Confidence 46999999973
No 159
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=29.73 E-value=1.4e+02 Score=24.22 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=23.8
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCC
Q 047472 52 IGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLP 98 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP 98 (163)
..+.|.|++..++--.+...+.+.+++ ..|++-|+.-|+-
T Consensus 4 ~~~gD~g~~~~~~~~~~~~~~~~~~~~-------~~~dfvv~~GD~~ 43 (277)
T cd07378 4 LALGDWGGGGTAGQKAVAKAMAKVAAE-------LGPDFILSLGDNF 43 (277)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHHHh-------cCCCEEEeCCCcc
Confidence 578999998333333233333333322 3578999999984
No 160
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=28.86 E-value=47 Score=29.76 Aligned_cols=48 Identities=23% Similarity=0.414 Sum_probs=33.9
Q ss_pred cCCCCcccH-HHHHHHHHHHHHHHhcCCCCCCceEEEeCC-----------CCCCchHHHHhhC
Q 047472 58 GCSSGPNSL-LVISEIMDIIHARCRNLDRPSPEFRVSLND-----------LPGNDFNSIFETL 109 (163)
Q Consensus 58 GCS~G~Nsl-~~~~~ii~~i~~~~~~~~~~~peiqv~~nD-----------LP~NDFntLF~~l 109 (163)
||+.|+-.| ..+.++|..|++..+ .-|.++|.++| ||.|-+.-+|...
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~----~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~ 60 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQ----TFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGP 60 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhccc----cCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCC
Confidence 889999888 789999999998743 22445555554 6777666666543
No 161
>smart00400 ZnF_CHCC zinc finger.
Probab=28.43 E-value=55 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=16.4
Q ss_pred eEEEeecCCCCcccHHHHHHH
Q 047472 52 IGIADLGCSSGPNSLLVISEI 72 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~~~~i 72 (163)
=..=++||..|.+.+.++.++
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 345679999999998777665
No 162
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=28.04 E-value=30 Score=25.41 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=7.1
Q ss_pred eEEEeecCcccc
Q 047472 127 CYVSAVAGSFYD 138 (163)
Q Consensus 127 ~f~~~vpgSFY~ 138 (163)
+++.|-||||++
T Consensus 96 ll~HGWPgSf~E 107 (112)
T PF06441_consen 96 LLLHGWPGSFLE 107 (112)
T ss_dssp EEE--SS--GGG
T ss_pred EEECCCCccHHh
Confidence 899999999986
No 163
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.93 E-value=33 Score=29.26 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=12.4
Q ss_pred ceEEEeecCCCCcccH
Q 047472 51 SIGIADLGCSSGPNSL 66 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl 66 (163)
--++.||||-+|=..-
T Consensus 126 F~~~lDLGCGTGL~G~ 141 (287)
T COG4976 126 FRRMLDLGCGTGLTGE 141 (287)
T ss_pred cceeeecccCcCcccH
Confidence 4579999999995543
No 164
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=26.77 E-value=41 Score=29.84 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=16.5
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.-+|.|+||+.|.-|+.+..
T Consensus 239 g~~VLDlcag~G~kt~~la~ 258 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILE 258 (426)
T ss_pred CCeEEEeCCCccHHHHHHHH
Confidence 36899999999999886654
No 165
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=26.51 E-value=80 Score=26.07 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCc
Q 047472 29 ISTAKPAIEEAILGILCEKVPESIGIADLGCSSGP 63 (163)
Q Consensus 29 i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~ 63 (163)
..++..||++-+. ++.- ..+.-+|.||||.-|.
T Consensus 48 e~riv~wl~d~~~-~~rv-~~~A~~VlDLGtGNG~ 80 (227)
T KOG1271|consen 48 EERIVDWLKDLIV-ISRV-SKQADRVLDLGTGNGH 80 (227)
T ss_pred HHHHHHHHHhhhh-hhhh-cccccceeeccCCchH
Confidence 3445556666555 2211 1222289999998884
No 166
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=25.88 E-value=70 Score=28.89 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.4
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 047472 51 SIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~ 70 (163)
--.|.|.||.+|.-|+..+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaq 197 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQ 197 (517)
T ss_pred CcEEEEecCCccHHHHHHHH
Confidence 35689999999999987654
No 167
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=25.87 E-value=89 Score=19.46 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=25.3
Q ss_pred ecCCCCcccHHHHHHHHHHHHHHHhc-CCCCCCceEEEeCCCCCCch
Q 047472 57 LGCSSGPNSLLVISEIMDIIHARCRN-LDRPSPEFRVSLNDLPGNDF 102 (163)
Q Consensus 57 lGCS~G~Nsl~~~~~ii~~i~~~~~~-~~~~~peiqv~~nDLP~NDF 102 (163)
+=|..|. +-.--.++++.|.+...+ ++.++-.+.|.+++.|..+|
T Consensus 5 i~~~~g~-~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w 50 (60)
T PF01361_consen 5 IKIPEGR-TAEQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENW 50 (60)
T ss_dssp EEEESTS--HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCE
T ss_pred EEECCCC-CHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhhe
Confidence 3345666 555555555555554332 45554569999999887665
No 168
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=25.87 E-value=2.1e+02 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=29.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCC
Q 047472 50 ESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLP 98 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP 98 (163)
++++|=--|||+|-=.-.+.-.+.++... .....++|+-.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId 138 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDID 138 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECC
Confidence 68999999999997665444444444332 12346999999953
No 169
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=25.70 E-value=34 Score=28.97 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.3
Q ss_pred ccCCCceeEEeccchhhcccC
Q 047472 140 LFPDKSLHFVHSSSSLHWLSQ 160 (163)
Q Consensus 140 lfP~~Svh~~~Ss~alHWLS~ 160 (163)
=|++.+.|=++|-.|++||=.
T Consensus 107 pfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCCCCccceEEEeeeeeeecc
Confidence 378999999999999999943
No 170
>PRK04457 spermidine synthase; Provisional
Probab=25.01 E-value=1.5e+02 Score=24.48 Aligned_cols=47 Identities=15% Similarity=0.298 Sum_probs=27.8
Q ss_pred CCceEEEeecCCCCcccHHHH--------------HHHHHHHHHHHhcCCCCCCceEEEeCC
Q 047472 49 PESIGIADLGCSSGPNSLLVI--------------SEIMDIIHARCRNLDRPSPEFRVSLND 96 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~--------------~~ii~~i~~~~~~~~~~~peiqv~~nD 96 (163)
+++-+|.|+||..|.-+..+. .++++..++.... ....+.++++..|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~D 125 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEAD 125 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECC
Confidence 445679999999998776554 3445555544321 1112446666666
No 171
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=24.47 E-value=95 Score=26.72 Aligned_cols=55 Identities=16% Similarity=0.422 Sum_probs=36.8
Q ss_pred eEEEeecCCCCcccHHH------------HHHHHHHHHHHHhcCCCCCCc-----eEEEeCCCCCCchHHHHhhC
Q 047472 52 IGIADLGCSSGPNSLLV------------ISEIMDIIHARCRNLDRPSPE-----FRVSLNDLPGNDFNSIFETL 109 (163)
Q Consensus 52 ~~IaDlGCS~G~Nsl~~------------~~~ii~~i~~~~~~~~~~~pe-----iqv~~nDLP~NDFntLF~~l 109 (163)
.+|.|.||-.|--|..+ ..+.|++-+++ ++. .|++ ..+-+.|+-.+|+-.=|..+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~--dP~~~~~~~y~l~~~~~~~E~~~~~fDaV 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKM--DPVLEGAIAYRLEYEDTDVEGLTGKFDAV 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhc--Cchhccccceeeehhhcchhhccccccee
Confidence 67999999999888754 35667777766 221 2222 23667888888877666654
No 172
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=24.34 E-value=62 Score=22.93 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=20.3
Q ss_pred hHHHHhhChhhhhhhHhhhCCCCCceEEEeecCccccc
Q 047472 102 FNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDR 139 (163)
Q Consensus 102 FntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpgSFY~r 139 (163)
-|.||+.|..... .....++..|-||-|+++
T Consensus 8 HsAifQ~L~~~~~-------~~v~~i~lTASGGpFr~~ 38 (84)
T PF08436_consen 8 HSAIFQCLQGEKR-------EEVEKIILTASGGPFRDK 38 (84)
T ss_dssp HHHHHHHSGHHHH-------CTEEEEEEEE--STTTTS
T ss_pred HHHHHHHCCCCCc-------cccCEEEEECcchhhCCC
Confidence 4778998876321 113479999999999875
No 173
>TIGR03488 cas_Cas5p CRISPR-associated protein, Cas5p family. CC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Probab=24.12 E-value=14 Score=30.00 Aligned_cols=31 Identities=39% Similarity=0.637 Sum_probs=19.2
Q ss_pred eEEEeecCccccc-ccCCCceeEEeccchhhc
Q 047472 127 CYVSAVAGSFYDR-LFPDKSLHFVHSSSSLHW 157 (163)
Q Consensus 127 ~f~~~vpgSFY~r-lfP~~Svh~~~Ss~alHW 157 (163)
--|+-.|||||.- ++|++-+=-+.--..|.|
T Consensus 27 smvselpgsfykal~~p~k~iicgl~envlgw 58 (237)
T TIGR03488 27 SMVSELPGSFYKALLVPDKHIICGLFENVLGW 58 (237)
T ss_pred HHHHhCchhHHHHhcCCcchhhhhhhhhhhhc
Confidence 4566789999977 577775543333333433
No 174
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=23.62 E-value=1.6e+02 Score=23.47 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=23.6
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCC
Q 047472 49 PESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPG 99 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~ 99 (163)
.++++|-..|||+|-=.-.+.=-+-+.... ...-.++|+-.|+-.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~------~~~~~~~I~atDi~~ 74 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPG------ALGWDFRILATDISP 74 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-------TT-SEEEEEEES-H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcc------cCCCceEEEEEECCH
Confidence 468999999999995444322222221211 122259999988643
No 175
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=23.33 E-value=96 Score=27.43 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=33.5
Q ss_pred CCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHH
Q 047472 11 KGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISE 71 (163)
Q Consensus 11 gG~G~~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ 71 (163)
+..++..|+-|...-+.....+...+.. .....+|.|++|.+|.-++....+
T Consensus 27 ~~~~~vFyqp~~~~nrdl~~~v~~~~~~---------~~~~~~vLDl~aGsG~~~l~~a~~ 78 (382)
T PRK04338 27 PSWAPVFYNPRMELNRDISVLVLRAFGP---------KLPRESVLDALSASGIRGIRYALE 78 (382)
T ss_pred CCCCCeeeCccccchhhHHHHHHHHHHh---------hcCCCEEEECCCcccHHHHHHHHH
Confidence 3446678888877766544444333311 001357999999999999987553
No 176
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=22.70 E-value=50 Score=26.87 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=16.9
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 047472 50 ESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 50 ~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
++-+|.|+||.+|.-++.+..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~ 88 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTAL 88 (234)
T ss_pred CCCEEEEecCcccHHHHHHHH
Confidence 456899999999998886554
No 177
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=22.25 E-value=30 Score=16.17 Aligned_cols=7 Identities=43% Similarity=0.985 Sum_probs=4.8
Q ss_pred hhcccCC
Q 047472 155 LHWLSQV 161 (163)
Q Consensus 155 lHWLS~v 161 (163)
.|||+=-
T Consensus 1 WhWL~~~ 7 (13)
T PF04648_consen 1 WHWLRLS 7 (13)
T ss_pred Ccceecc
Confidence 3999843
No 178
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=22.13 E-value=47 Score=26.82 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=11.6
Q ss_pred EEeecCCCCcccHHHH
Q 047472 54 IADLGCSSGPNSLLVI 69 (163)
Q Consensus 54 IaDlGCS~G~Nsl~~~ 69 (163)
|||.||=+|.-.+.++
T Consensus 1 vaDIGtDHgyLpi~L~ 16 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLL 16 (205)
T ss_dssp EEEET-STTHHHHHHH
T ss_pred CceeccchhHHHHHHH
Confidence 7999999998766443
No 179
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=22.05 E-value=1.2e+02 Score=19.12 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=29.1
Q ss_pred CCcccHHHHHHHHHHHHHHHh-cCCCCCCceEEEeCCCCCCchH
Q 047472 61 SGPNSLLVISEIMDIIHARCR-NLDRPSPEFRVSLNDLPGNDFN 103 (163)
Q Consensus 61 ~G~Nsl~~~~~ii~~i~~~~~-~~~~~~peiqv~~nDLP~NDFn 103 (163)
.|+ |-.--.++++.|.+... .++.++-.+.|++++.|.-||.
T Consensus 10 ~gr-t~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~ 52 (64)
T PRK01964 10 EGR-PEEKIKNLIREVTEAISATLDVPKERVRVIVNEVPSSHWG 52 (64)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcChHHee
Confidence 465 66667777777776644 3566666799999998877664
No 180
>PF13362 Toprim_3: Toprim domain
Probab=21.54 E-value=2.1e+02 Score=19.40 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=30.2
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhC
Q 047472 49 PESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETL 109 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l 109 (163)
++.+..+|-.-+.- ......++.+.++.. +. .++++.-+..++|||.+.+..
T Consensus 42 ~~vii~~D~D~~~~--G~~~a~~~~~~~~~~----g~---~~~~~~p~~~g~D~ND~l~~~ 93 (96)
T PF13362_consen 42 RRVIIAADNDKANE--GQKAAEKAAERLEAA----GI---AVSIVEPGPEGKDWNDLLQAR 93 (96)
T ss_pred CeEEEEECCCCchh--hHHHHHHHHHHHHhC----CC---eEEEECCCCCCchHHHHHHhh
Confidence 34566777665522 333444455444432 21 355655578899999988763
No 181
>PHA03412 putative methyltransferase; Provisional
Probab=21.46 E-value=39 Score=28.35 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=49.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHH--------------HHHHHHhcCCCCCCceEEEeCCCCCCchHHHHhhC---hhhh
Q 047472 51 SIGIADLGCSSGPNSLLVISEIMD--------------IIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETL---PAFF 113 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl~~~~~ii~--------------~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~l---~~~~ 113 (163)
..+|+|+||-+|.-++.+...+.. +++... . ..+.+.+...|+-..+++.-|..+ |++.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar--~--n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK--R--IVPEATWINADALTTEFDTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH--h--hccCCEEEEcchhcccccCCccEEEECCCCC
Confidence 468999999999888876654210 111111 1 123477888887655554445544 2222
Q ss_pred hh-hHhhhCC--C--CCceEE-----EeecCcccccccCCCceeEEecc
Q 047472 114 KK-QKQEKGI--G--FGRCYV-----SAVAGSFYDRLFPDKSLHFVHSS 152 (163)
Q Consensus 114 ~~-~~~~~~~--~--~~~~f~-----~~vpgSFY~rlfP~~Svh~~~Ss 152 (163)
.. .....+. + ....++ ..-||.| ++|..++.|.+|.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~---ILP~~~~~~~y~~ 171 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF---IIPQMSANFRYSG 171 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE---EeCcccccCcccC
Confidence 10 0000010 0 000011 2357777 8899998888874
No 182
>PLN02366 spermidine synthase
Probab=21.35 E-value=2.7e+02 Score=23.87 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.9
Q ss_pred CCCceEEEeecCCCCcccHHHHH
Q 047472 48 VPESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 48 ~~~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.+++-+|.|+||..|.-+..++.
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk 111 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIAR 111 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHh
Confidence 35577899999999987765554
No 183
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=21.25 E-value=50 Score=24.64 Aligned_cols=13 Identities=46% Similarity=0.997 Sum_probs=11.3
Q ss_pred CceEEEeecCCCC
Q 047472 50 ESIGIADLGCSSG 62 (163)
Q Consensus 50 ~~~~IaDlGCS~G 62 (163)
+....+|+||--|
T Consensus 58 ~~~~FVDlGCGNG 70 (112)
T PF07757_consen 58 KFQGFVDLGCGNG 70 (112)
T ss_pred CCCceEEccCCch
Confidence 4678999999988
No 184
>KOG1528 consensus Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=21.23 E-value=1.3e+02 Score=26.46 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=24.6
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCceEEEeecC
Q 047472 18 YAKNSTVQSKIISTAKPAIEEAILGILCEK-------VPESIGIADLGC 59 (163)
Q Consensus 18 Ya~NS~~Q~~~i~~~~p~l~~ai~~~~~~~-------~~~~~~IaDlGC 59 (163)
|-+-=..-.+|...+--+-++.-+++.... ...|.+|||||.
T Consensus 3 yekEl~~A~~AV~lAsrL~~~Vq~~L~~~~~~v~~K~D~SPVTvaDyG~ 51 (351)
T KOG1528|consen 3 YEKELDAAKKAVRLASRLCVKVQKSLLSSKEKVWSKSDKSPVTVADYGS 51 (351)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccCCCCCcchhhhhH
Confidence 333334445555666666555555553321 356899999994
No 185
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=21.20 E-value=56 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.7
Q ss_pred EEEeecCCCCcccHHHHHHH
Q 047472 53 GIADLGCSSGPNSLLVISEI 72 (163)
Q Consensus 53 ~IaDlGCS~G~Nsl~~~~~i 72 (163)
+|.|.-|-.|+||+.+....
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~ 21 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF 21 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT
T ss_pred EEEEeccCcCHHHHHHHHhC
Confidence 58999999999999888764
No 186
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.12 E-value=76 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=16.7
Q ss_pred CCceEEEeecCCCCcccHHHHH
Q 047472 49 PESIGIADLGCSSGPNSLLVIS 70 (163)
Q Consensus 49 ~~~~~IaDlGCS~G~Nsl~~~~ 70 (163)
.+-.+|.|||+|-|.=|-.+..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~ 65 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAK 65 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHH
Confidence 4468899999999987664443
No 187
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=20.95 E-value=37 Score=26.36 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=20.0
Q ss_pred EeecCcccccccCCCcee---EEeccchhhcccCCC
Q 047472 130 SAVAGSFYDRLFPDKSLH---FVHSSSSLHWLSQVS 162 (163)
Q Consensus 130 ~~vpgSFY~rlfP~~Svh---~~~Ss~alHWLS~vP 162 (163)
.|-||.||+|.|..-.-. ++. +|....+.++|
T Consensus 133 LG~GgGyYDR~L~~~~~~~~~igv-~~~~q~~~~lp 167 (181)
T TIGR02727 133 LGYGGGYYDRFLANLKGKTVVVGL-AFDFQLVDELP 167 (181)
T ss_pred ccCCcchHHHHHHhcccCCCEEEE-EecceeeCccC
Confidence 468999999998753211 333 35555566555
No 188
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=20.78 E-value=58 Score=27.28 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=12.9
Q ss_pred ceEEEeecCCCCcccH
Q 047472 51 SIGIADLGCSSGPNSL 66 (163)
Q Consensus 51 ~~~IaDlGCS~G~Nsl 66 (163)
...+||+||.-|+-.+
T Consensus 61 kvefaDIGCGyGGLlv 76 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLM 76 (249)
T ss_pred cceEEeeccCccchhh
Confidence 4789999999996544
No 189
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=20.13 E-value=85 Score=26.74 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhcCCCCCCceEEEeCCCC
Q 047472 32 AKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLP 98 (163)
Q Consensus 32 ~~p~l~~ai~~~~~~~~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~peiqv~~nDLP 98 (163)
-..||.+...++.......+-+|...||..|...+.++.. .+.|.+.||..|-.
T Consensus 53 dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~-------------~~n~~l~v~acDfs 106 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKT-------------SPNNRLKVYACDFS 106 (264)
T ss_pred hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhc-------------CCCCCeEEEEcCCC
Confidence 4568888877776443222348999999999766644321 12234777777643
Done!