BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047474
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/287 (63%), Positives = 220/287 (76%)
Query: 27 VRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKI 86
+ SI ECIQ DEL L K + ICYDGFEPSGRMHIAQG++K+I VNKLTS GC
Sbjct: 34 ILSISSECIQPDELRVKLLLKRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIF 93
Query: 87 WVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPL 146
W+ADWFA LNNKM GDLKKI+ VG Y IE+W + GM E V+FLW+SEEIN + +EYW L
Sbjct: 94 WIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSL 153
Query: 147 VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKV 206
V+DI+R + R+ RC +IMGRSE +E +QILYPCMQCADIFFL DICQLG+DQRKV
Sbjct: 154 VLDISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKV 213
Query: 207 NVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKA 266
N+LAREYCD K K KP+ILSH MLPGL +GQEKMSKSD +SAI+M+D E++VN KIKKA
Sbjct: 214 NMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKKA 273
Query: 267 YCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
YCPP ++E NP Y K IIFP +F + R E NGG+KT+ T++ L
Sbjct: 274 YCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQEL 320
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/285 (61%), Positives = 220/285 (77%), Gaps = 16/285 (5%)
Query: 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKL 77
M+ +E+++L+RS+GEECIQE EL NL+ KKP CYDGFEPSGRMHIAQG+ KA++VNK
Sbjct: 9 MNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKC 68
Query: 78 TSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEIN 137
T+AGC+ WVADWFA +N+K+GG+L+KI+ VGRYLIE+W A GM ++V FLWSSEEI
Sbjct: 69 TAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEIT 128
Query: 138 ARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADIC 197
+ AD YW +V+DI R+N + RI +CC IMG++E LTAAQ+LYP MQC DIFFLKADIC
Sbjct: 129 SHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE-GTLTAAQVLYPLMQCCDIFFLKADIC 187
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEA 257
QLG+DQRKVN+LAREYCD I RK KP+ILSHHML GL+QGQ KMSKSDP SAI+MED E
Sbjct: 188 QLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEE 247
Query: 258 EVNVKIKKAYCP--------------PKIVEG-NPCLEYIKYIIF 287
+V KI++AYCP P + NP L+Y + +++
Sbjct: 248 DVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVY 292
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 14/254 (5%)
Query: 62 MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVG 121
+ +A+G++K V + + DW A ++++ G K I + + A G
Sbjct: 396 LDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYG 455
Query: 122 MRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILY 181
+ + V+ + +E I D++W V+ IAR+N L + ++ G ++ A Q++
Sbjct: 456 LPSS-VKIVTENEVILGNCDDFWVSVIGIARKNLLSHVE---ELYGGEVRN---AGQVIA 508
Query: 182 PCMQCADIFFLK-ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEK 240
M+ A L + + +D +N AREY K + + +P L +
Sbjct: 509 ALMRVATALMLSVSHVISTSLDGH-INAFAREY---TKERIDCVQTLEGRIPALHRPGAA 564
Query: 241 MSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEA 300
+ +Y++D + ++ KIKKAY P E NP + ++++ +ER EA
Sbjct: 565 PAVLGADDVLYLDDNDMDIRRKIKKAYSAPN-EEANPVISVAQHLL-AQHGALSIERGEA 622
Query: 301 NGGNKTFETMKNLL 314
NGGN ++ T + L+
Sbjct: 623 NGGNVSYNTPEALV 636
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 354 bits (908), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 167/284 (58%), Positives = 209/284 (73%), Gaps = 16/284 (5%)
Query: 19 SVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLT 78
+ +E+++L+RS+GEECIQE EL NL+ KKP CYDGFEPSGR HIAQG+ KA++VNK T
Sbjct: 10 NTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRXHIAQGIFKAVNVNKCT 69
Query: 79 SAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINA 138
+AGC+ WVADWFA N+K+GG+L+KI+ VGRYLIE+W A G ++V FLWSSEEI +
Sbjct: 70 AAGCEFVFWVADWFALXNDKVGGELEKIRIVGRYLIEVWKAAGXDXDKVLFLWSSEEITS 129
Query: 139 RADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQ 198
AD YW V+DI R+N + RI +CC I G++E LTAAQ+LYP QC DIFFLKADICQ
Sbjct: 130 HADTYWRXVLDIGRQNTIARIKKCCTIXGKTE-GTLTAAQVLYPLXQCCDIFFLKADICQ 188
Query: 199 LGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAE 258
LG+DQRKVN LAREYCD I RK KP+ILSHH L GL+QGQ K SKSDP SAI+ ED E +
Sbjct: 189 LGLDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDTEED 248
Query: 259 VNVKIKKAYCP--------------PKIVEG-NPCLEYIKYIIF 287
V KI++AYCP P + NP L+Y + +++
Sbjct: 249 VARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVY 292
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 113/254 (44%), Gaps = 14/254 (5%)
Query: 62 MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVG 121
+ +A+G +K V + + DW A ++++ G K I + + A G
Sbjct: 396 LDVAEGXIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYG 455
Query: 122 MRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILY 181
+ + V+ + +E I D++W V+ IAR+N L + ++ G ++ A Q++
Sbjct: 456 LPSS-VKIVTENEVILGNCDDFWVSVIGIARKNLLSHVE---ELYGGEVRN---AGQVIA 508
Query: 182 PCMQCADIFFLK-ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEK 240
+ A L + + +D +N AREY K + + +P L +
Sbjct: 509 ALXRVATALXLSVSHVISTSLDGH-INAFAREY---TKERIDCVQTLEGRIPALHRPGAA 564
Query: 241 MSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEA 300
+ +Y++D + ++ KIKKAY P E NP + ++++ +ER EA
Sbjct: 565 PAVLGADDVLYLDDNDXDIRRKIKKAYSAPN-EEANPVISVAQHLL-AQHGALSIERGEA 622
Query: 301 NGGNKTFETMKNLL 314
NGGN ++ T + L+
Sbjct: 623 NGGNVSYNTPEALV 636
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 256 bits (655), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 132/279 (47%), Positives = 180/279 (64%), Gaps = 6/279 (2%)
Query: 14 STPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAIS 73
+T + E + + SI EEC D L L+ Y+GFEPSGR+HIAQ ++ ++
Sbjct: 5 NTDHTNNEHRLTQLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGRIHIAQALITVMN 64
Query: 74 VNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSS 133
N + G ++ I++ADWFA++N KM GD+ KI+ +GRY IE++ A G+ + F+W+S
Sbjct: 65 TNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWAS 124
Query: 134 EEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFL- 192
E I A Y ++DIA + + R+ RCCQIMGR+E D L A+QI YPCMQ AD+F L
Sbjct: 125 EFI-ASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELV 183
Query: 193 --KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI 250
DICQLG+DQRKVN+LA EY +D K PI LSHHML L ++KMSKSDP AI
Sbjct: 184 PEGIDICQLGIDQRKVNMLAIEYANDRGLK-IPISLSHHMLMSLSGPKKKMSKSDPQGAI 242
Query: 251 YMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPW 289
+M+D E EV+ KI +AYC + + NP EYIKY++ W
Sbjct: 243 FMDDTEQEVSEKISRAYCTDETFD-NPIFEYIKYLLLRW 280
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 177/327 (54%), Gaps = 33/327 (10%)
Query: 18 MSVEEKFRLV-RSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNK 76
M +EE+ LV + EE + + L +L Y GFE SG +H+ G+M +
Sbjct: 1 MDIEERINLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIAD 60
Query: 77 LTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWI-----AVGMRTERVEFLW 131
AG K ++++ADW + +N+K+GGDL+ IQ V ++ + +G ++VEF+
Sbjct: 61 FQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVL 120
Query: 132 SSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFF 191
+SE I + D YW V+DI++ L R+MR IMGR + + A+++YP MQ ADIF+
Sbjct: 121 ASE-ILEKGD-YWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFY 178
Query: 192 LKADICQLGMDQRKVNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQ------- 236
I GMDQRK +V+A E ++ K KP+ + HH+L GLQ+
Sbjct: 179 QGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIE 238
Query: 237 ---------GQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF 287
Q KMSKS P SA+++ D E+ K++KA+CP + V NP L++++YIIF
Sbjct: 239 SEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIF 298
Query: 288 PWD-KKFVVERSEANGGNKTFETMKNL 313
+ +F V R GG+ T+ T + L
Sbjct: 299 REEPTEFTVHRPAKFGGDVTYTTFEEL 325
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 21/314 (6%)
Query: 17 QMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNK 76
++ VEE+F + E + E+EL LL + Y G+EPSG HI V V
Sbjct: 3 RVDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVW-MYKVKD 61
Query: 77 LTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136
L AG + A W A +N+K+GGD+ I+ R + + A G+ ERV F+ +EE+
Sbjct: 62 LVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFV-DAEEL 120
Query: 137 NARADEYWPLVMDIARRNKLPRIMRCCQIMGR-SEQDELTAAQILYPCMQCADIFFLKAD 195
+ D YW LV+ +A+R L R+ R IMGR +E+ E+ A++++YP MQ +DIF++ D
Sbjct: 121 ASDKD-YWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMDLD 179
Query: 196 ICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQ--------QGQ-------EK 240
I GMDQRK ++LAR+ + + RK KP+ + ++ LQ QG+ K
Sbjct: 180 IALGGMDQRKAHMLARDVAEKLGRK-KPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVK 238
Query: 241 MSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSE 299
MSKS P +A+++ D + ++ KI+KAYCP K V+GNP LE +YI+F D V+R
Sbjct: 239 MSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPA 298
Query: 300 ANGGNKTFETMKNL 313
GG + + + L
Sbjct: 299 KYGGPVEYTSYEEL 312
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 161/296 (54%), Gaps = 10/296 (3%)
Query: 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKL 77
M + EK RL+ EE + E+EL L+ K +P Y G+EPSG +H+ +M + L
Sbjct: 1 MDITEKLRLITRNAEEVVTEEELRQLIETKEKPRAYVGYEPSGEIHLGH-MMTVQKLMDL 59
Query: 78 TSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEIN 137
AG ++ + +AD A LN K G ++I V Y +++IA+G+ R +F+ SE
Sbjct: 60 QEAGFEIIVLLADIHAYLNEK--GTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQL 117
Query: 138 ARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADIC 197
+R +Y V+ +AR L R R + R ++D + + Q++YP MQ DI L D+
Sbjct: 118 SR--DYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVS-QMIYPLMQALDIAHLGVDLA 174
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEA 257
G+DQRK+++LARE + + P+ L +L GL GQ KMS S + I + D
Sbjct: 175 VGGIDQRKIHMLARENLPRLG-YSSPVCLHTPILVGLD-GQ-KMSSSK-GNYISVRDPPE 230
Query: 258 EVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
EV KI+KAYCP +VE NP L+ KY I P K VVER GG+ + + + L
Sbjct: 231 EVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEEL 286
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 172/304 (56%), Gaps = 25/304 (8%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + Y GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + +++ SE + D
Sbjct: 60 FDIIILLADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSE---FQLD 111
Query: 142 EYWPL-VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLG 200
+ + L V +A + L R R +++ R +++ A+++YP MQ DI +L D+ G
Sbjct: 112 KDYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNDIHYLGVDVAVGG 170
Query: 201 MDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260
M+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 171 MEQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMS-SSKGNFIAVDDSPEEIR 223
Query: 261 VKIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK- 318
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K
Sbjct: 224 AKIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKN 279
Query: 319 KEIY 322
KE++
Sbjct: 280 KELH 283
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 170/304 (55%), Gaps = 25/304 (8%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + Y GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + +++ SE + D
Sbjct: 60 FDIIILLADLAAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSE---FQLD 111
Query: 142 EYWPL-VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLG 200
+ + L V +A + L R R +++ R +++ A+++YP MQ +L D+ G
Sbjct: 112 KDYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNTSHYLGVDVAVGG 170
Query: 201 MDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260
M+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 171 MEQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMS-SSKGNFIAVDDSPEEIR 223
Query: 261 VKIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK- 318
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K
Sbjct: 224 AKIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKN 279
Query: 319 KEIY 322
KE++
Sbjct: 280 KELH 283
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 169/303 (55%), Gaps = 23/303 (7%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSALIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + +++ SE + +
Sbjct: 60 FDIIIILADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSEFMLDK-- 112
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
+Y V +A + L R R +++ R +++ A+++YP MQ I ++ D+ GM
Sbjct: 113 DYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNGIHYVGGDVAVGGM 171
Query: 202 DQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261
+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 172 EQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMS-SSKGNFIAVDDSPEEIRA 224
Query: 262 KIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK-K 319
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K K
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKNK 280
Query: 320 EIY 322
E++
Sbjct: 281 ELH 283
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 168/303 (55%), Gaps = 23/303 (7%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSALIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + +++ SE + +
Sbjct: 60 FDIIIVLADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSEWMLDK-- 112
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
+Y V +A + L R R +++ R +++ A+++YP MQ +L D+ GM
Sbjct: 113 DYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNGAHYLGVDVAVGGM 171
Query: 202 DQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261
+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 172 EQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMS-SSKGNFIAVDDSPEEIRA 224
Query: 262 KIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK-K 319
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K K
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKNK 280
Query: 320 EIY 322
E++
Sbjct: 281 ELH 283
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 168/303 (55%), Gaps = 23/303 (7%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSAIIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD FA LN K G+L +I+ +G Y +++ A+G++ + +++ S + +
Sbjct: 60 FDIIILLADLFAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSSFMLDK-- 112
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
+Y V +A + L R R +++ R +++ A+++YP MQ + + D+ GM
Sbjct: 113 DYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNPLHYEGVDVAVGGM 171
Query: 202 DQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261
+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 172 EQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMSSSK-GNFIAVDDSPEEIRA 224
Query: 262 KIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK-K 319
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K K
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKNK 280
Query: 320 EIY 322
E++
Sbjct: 281 ELH 283
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 168/304 (55%), Gaps = 25/304 (8%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSAQIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + +++ S + D
Sbjct: 60 FDIIILLADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGS---TFQLD 111
Query: 142 EYWPL-VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLG 200
+ + L V +A + L R R +++ R +++ A+++YP MQ I + D+ G
Sbjct: 112 KDYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNAIHYPGVDVAVGG 170
Query: 201 MDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260
M+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 171 MEQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMSSSK-GNFIAVDDSPEEIR 223
Query: 261 VKIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK- 318
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K
Sbjct: 224 AKIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKN 279
Query: 319 KEIY 322
KE++
Sbjct: 280 KELH 283
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 167/303 (55%), Gaps = 23/303 (7%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSALIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + V SS +++
Sbjct: 60 FDIIILLADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAKYV--YGSSFQLDK--- 112
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
+Y V +A + L R R +++ R +++ A+++YP MQ + + D+ GM
Sbjct: 113 DYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNPLHYEGVDVAVGGM 171
Query: 202 DQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261
+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 172 EQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMSSSK-GNFIAVDDSPEEIRA 224
Query: 262 KIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK-K 319
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K K
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKNK 280
Query: 320 EIY 322
E++
Sbjct: 281 ELH 283
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 168/304 (55%), Gaps = 25/304 (8%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSALIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + +++ SE + D
Sbjct: 60 FDIIILLADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSE---FQLD 111
Query: 142 EYWPL-VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLG 200
+ + L V +A + L R R +++ R +++ A+++YP MQ + D+ G
Sbjct: 112 KDYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNGCHYRGVDVAVGG 170
Query: 201 MDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260
M+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 171 MEQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMS-SSKGNFIAVDDSPEEIR 223
Query: 261 VKIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK- 318
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K
Sbjct: 224 AKIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKN 279
Query: 319 KEIY 322
KE++
Sbjct: 280 KELH 283
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 168/304 (55%), Gaps = 25/304 (8%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 1 DEFEMIKRNTSEIISEEELREVL-KKDEKSAGIGFEPSGKIHLGH-YLQIKKMIDLQNAG 58
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + +++ S + D
Sbjct: 59 FDIIILLADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSP---FQLD 110
Query: 142 EYWPL-VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLG 200
+ + L V +A + L R R +++ R +++ A+++YP MQ L D+ G
Sbjct: 111 KDYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNTSHRLGVDVAVGG 169
Query: 201 MDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260
M+QRK+++LARE K +++ + +L GL G+ KMS S + I ++D E+
Sbjct: 170 MEQRKIHMLARELL-----PKKVVMIHNPVLTGLD-GEGKMSSSK-GNFIAVDDSPEEIR 222
Query: 261 VKIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK- 318
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K
Sbjct: 223 AKIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKN 278
Query: 319 KEIY 322
KE++
Sbjct: 279 KELH 282
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 23/303 (7%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSALIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + V SS +++
Sbjct: 60 FDIIILLADLHAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAKYV--YGSSFQLDK--- 112
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
+Y V +A + L R R +++ R +++ A+++YP MQ + D+ GM
Sbjct: 113 DYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMQVNPAHYQGVDVVVGGM 171
Query: 202 DQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261
+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 172 EQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMSSSK-GNFIAVDDSPEEIRA 224
Query: 262 KIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK-K 319
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K K
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKNK 280
Query: 320 EIY 322
E++
Sbjct: 281 ELH 283
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 169/304 (55%), Gaps = 25/304 (8%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + GFEPSG++H+ ++ + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSAGIGFEPSGKIHLGH-YLQIKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I++AD A LN K G+L +I+ +G Y +++ A+G++ + +++ SE + D
Sbjct: 60 FDIIIYLADLAAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAK---YVYGSE---FQLD 111
Query: 142 EYWPL-VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLG 200
+ + L V +A + L R R +++ R +++ A+++YP M+ + D+ G
Sbjct: 112 KDYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYPIMEVNGWHYSGVDVAVGG 170
Query: 201 MDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260
M+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 171 MEQRKIHMLARELL-----PKKVVCIHNPVLTGLD-GEGKMS-SSKGNFIAVDDSPEEIR 223
Query: 261 VKIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFETMKNLLLIMK- 318
KIKKAYCP +VEGNP +E KY + +P ++R E GG+ T + + L + K
Sbjct: 224 AKIKKAYCPAGVVEGNPIMEIAKYFLEYP----LTIKRPEKFGGDLTVNSYEELESLFKN 279
Query: 319 KEIY 322
KE++
Sbjct: 280 KELH 283
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 139/293 (47%), Gaps = 45/293 (15%)
Query: 53 YDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY 112
Y G P+GR H V + AGC+V + +AD A L+N M L+ + +Y
Sbjct: 43 YWGTAPTGRPHCGYFV-PMTKLADFLKAGCEVTVLLADLHAFLDN-MKAPLEVVNYRAKY 100
Query: 113 LIEIWIAVGMRT-----ERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMG 167
E+ I +R+ E+++F+ S + L D I R I+
Sbjct: 101 Y-ELTIKAILRSINVPIEKLKFVVGSS---------YQLTPDYTMD-----IFRLSNIVS 145
Query: 168 RSEQDELTA-----------AQILYPCMQCADIFFLKADICQLG-MDQRKVNVLAREYCD 215
+++ A + ++YP MQ D FL D CQ G +DQRK+ VLA E
Sbjct: 146 QNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQFLDVD-CQFGGVDQRKIFVLAEENLP 204
Query: 216 DIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEG 275
+ K + ++ + M+PGL QG KMS SDP+S I + +E +V KI A+C P VE
Sbjct: 205 SLGYKKRAHLM-NPMVPGLAQGG-KMSASDPNSKIDLLEEPKQVKKKINSAFCSPGNVEE 262
Query: 276 NPCLEYIKYIIFPWDK--------KFVVERSEANGGNKTFETMKNLLLIMKKE 320
N L +++Y+I P + +F ++R E GG T+++ + + L K+E
Sbjct: 263 NGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEE 315
>pdb|1N3L|A Chain A, Crystal Structure Of A Human Aminoacyl-Trna Synthetase
Cytokine
pdb|1Q11|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tyrosyl-Trna Synthetase With Tyrosinol
Length = 372
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 158/305 (51%), Gaps = 25/305 (8%)
Query: 19 SVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLT 78
S EEK L+ +E + E++L +L ++ I Y G +G+ H+A V + +
Sbjct: 6 SPEEKLHLITRNLQEVLGEEKLKEILKERELKI-YWGTATTGKPHVAYFVPMS-KIADFL 63
Query: 79 SAGCKVKIWVADWFAQLNN-KMGGDLKKI-----QTVGRYLIEIWIAVGMRTERVEFLWS 132
AGC+V I AD A L+N K +L ++ + V + ++E ++G+ E+++F+
Sbjct: 64 KAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLE---SIGVPLEKLKFIKG 120
Query: 133 SEEINARADEYWPLVMDIARRNKLPRIMRC----CQIMGRSEQDELTAAQILYPCMQCAD 188
++ + EY +D+ R + + +++ + E L+ +LYP +Q D
Sbjct: 121 TD--YQLSKEY---TLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSG--LLYPGLQALD 173
Query: 189 IFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSS 248
+LK D G+DQRK+ A +Y + +K + L + M+PGL KMS S+ S
Sbjct: 174 EEYLKVDAQFGGIDQRKIFTFAEKYLPALGY-SKRVHLMNPMVPGLTGS--KMSSSEEES 230
Query: 249 AIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFE 308
I + D + +V K+KKA+C P VE N L +IK+++FP +FV+ R E GGNKT+
Sbjct: 231 KIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYT 290
Query: 309 TMKNL 313
+L
Sbjct: 291 AYVDL 295
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 19/235 (8%)
Query: 55 GFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLI 114
G P+G++HI V + KL G + +VADW A + D+ K++ R L+
Sbjct: 18 GMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHY--DDVSKLKEYTRDLV 75
Query: 115 EIWIAVGMRTER-VEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDE 173
++A G+ E+ V F+ S + +A + +++ ++R ++P + + +D
Sbjct: 76 RGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSEL--NYKDL 133
Query: 174 LTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYC-------DDIKRKNKPIIL 226
TA ++YP +Q ADI KA+ +G DQ L RE D++ + + I+
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILS 193
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVE----GNP 277
LPG KMSKS + I +E E E+ I + P V GNP
Sbjct: 194 RVPKLPGTD--GRKMSKS-YGNIINLEISEKELEQTILRMMTDPARVRRSDPGNP 245
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ E+ SE + A A W ++ +A +L R+ Q +S+
Sbjct: 93 RNLAALYLAVGLDPEKATLFIQSE-VPAHAQAGW-MMQCVAYIGELERM---TQFKDKSK 147
Query: 171 QDELTAAQIL-YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-NKPIILSH 228
+E + +L YP + ADI D+ G DQ++ L R + +K N +
Sbjct: 148 GNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPE 207
Query: 229 HMLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+P L +KMSKSDP+ Y+ DE ++ KIK A
Sbjct: 208 VKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSA 254
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 107/264 (40%), Gaps = 33/264 (12%)
Query: 17 QMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNK 76
+ +E F + R I D++L + + GF PSG+ H ++V++
Sbjct: 38 KAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGFMPSGKFHFGH----KLTVDQ 93
Query: 77 LT---SAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSS 133
L G KV + +AD A ++G + V Y+ + IA+G+ + EF + +
Sbjct: 94 LIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANM-IALGLDPKDTEFYFQT 152
Query: 134 EEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLK 193
R Y+ L+ + + + I G ELT A+++ Q ADI ++
Sbjct: 153 N----RGTPYFRLIQLFSGKVTAAEME---AIYG-----ELTPAKMMASLTQAADILHVQ 200
Query: 194 AD--------ICQLGMDQRKVNVLAREYCD---DIKRKNKPIILSHHMLPGLQQGQEKMS 242
D + +G DQ L R+ D + +P H + PGL KMS
Sbjct: 201 LDEYGGYRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDG--RKMS 258
Query: 243 KSDPSSAIYMEDEEAEVNVKIKKA 266
S P S I++ D K+ +A
Sbjct: 259 SSRPDSTIFLTDPPEVARNKLFRA 282
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 21/159 (13%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W +++C +G E
Sbjct: 54 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAW--------------MLQCIVYIGELE 98
Query: 171 Q-DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHH 229
+ +++A + YP + ADI DI +G DQ++ L R+ + R NK
Sbjct: 99 RMTQVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE---RFNKRYFTIPE 155
Query: 230 MLPGLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+ L +KMSKSDP+ Y+ D+ + KIK +
Sbjct: 156 RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS 194
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W L + + + R Q +S
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAWMLQCIVY----IGELERMTQFKEKSA 113
Query: 171 QDELTAAQIL-YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDI-KRKNKPIILSH 228
E +A +L YP + ADI DI +G DQ++ L R+ + KR + +
Sbjct: 114 GKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPE 173
Query: 229 HMLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+P L +KMSKSDP+ Y+ D+ + KIK A
Sbjct: 174 ARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA 220
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W +++C +G E
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAW--------------MLQCIVYIGELE 103
Query: 171 QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHM 230
+ ++A + YP + ADI DI +G DQ++ L R+ + ++ I + +
Sbjct: 104 R-MVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYFTIPEARRI 162
Query: 231 LPGLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+ L +KMSKSDP+ Y+ D+ + KIK +
Sbjct: 163 M-SLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS 199
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 27/172 (15%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W +++C +G E
Sbjct: 54 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAW--------------MLQCIVYIGELE 98
Query: 171 Q-DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHH 229
+ +++A + YP + ADI DI +G DQ++ L R+ + ++ +
Sbjct: 99 RMTQVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY--FTIPEA 156
Query: 230 MLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKAYCPPKI 272
+P L +KMSKSDP+ Y+ D+ + KIK + P I
Sbjct: 157 RIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSSEGTPGI 208
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 55 GFEPSGRMHIAQ--GVMKA-ISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGR 111
G +PSG +HI G +K +++ + G + D+ A L N + D +
Sbjct: 7 GIQPSGEIHIGNYLGAIKQWVAIGE--KLGRDAFFCIVDYHA-LTNPLAYDPSTLAQRTF 63
Query: 112 YLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGR-SE 170
+ IA G+ E+V + + E+ L L + R Q + S+
Sbjct: 64 EAALVNIAAGLDPEKVTLF-----VQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK 118
Query: 171 QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLARE--------YCDDIKRKNK 222
Q+ + + ++YP +Q ADI KAD +G DQ + L RE + +
Sbjct: 119 QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGETFPEPQA 178
Query: 223 PIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEA 257
+ +PG+ G+ KMSKS ++ +E EE+
Sbjct: 179 LLNPEAPRVPGI-DGKAKMSKSLGNTIGLLEPEES 212
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 23/162 (14%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W +++C +G E
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAW--------------MLQCIVYIGELE 103
Query: 171 Q-DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCD---DIKRKNKPIIL 226
+ +++A + YP + ADI DI +G DQ++ L R+ + I P +
Sbjct: 104 RMTQVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFFTIPEARIPKVG 163
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+ M L +KMSKSDP+ Y+ D+ + KIK A
Sbjct: 164 ARIM--SLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA 203
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W L + + + R Q +S
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAWXLQCIVY----IGELERXTQFKEKSA 113
Query: 171 QDELTAAQIL-YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDI-KRKNKPIILSH 228
E +A +L YP + ADI DI +G DQ++ L R+ + KR + +
Sbjct: 114 GKEAVSAGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPE 173
Query: 229 HMLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+P L +K SKSDP+ Y+ D+ + KIK A
Sbjct: 174 ARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSA 220
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W L + + + R Q +S
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAWXLQCIVY----IGELERXTQFKEKSA 113
Query: 171 QDELTAAQIL-YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDI-KRKNKPIILSH 228
E +A +L YP + ADI DI +G DQ++ L R+ + KR + +
Sbjct: 114 GKEAVSAGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPE 173
Query: 229 HMLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+P L +K SKSDP+ Y+ D+ + KIK A
Sbjct: 174 ARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSA 220
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 95/233 (40%), Gaps = 21/233 (9%)
Query: 51 ICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVAD--WFAQLNNKMGGDLKKIQT 108
Y G PSG MHI + + G + I + D F N D K+
Sbjct: 75 FLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAY 134
Query: 109 VGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGR 168
+++I IAVG ++ F++ + E + + + + IA++ + G
Sbjct: 135 DN--ILDI-IAVGFDPDKT-FIFQNSEFT----KIYEMAIPIAKKINFSM---AKAVFGF 183
Query: 169 SEQDELTAAQILYPCMQCADIFFLKAD-ICQLGMDQRKVNVLAREYCDDIKRKNKPIILS 227
+EQ ++ I +P +Q A FF + + +DQ L R++ + + K L
Sbjct: 184 TEQSKI--GMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGY-YKTAALH 240
Query: 228 HHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLE 280
+P L KMS S P +AIY+ D +V K+ K + G P L+
Sbjct: 241 SKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKF----TLTGGRPTLK 289
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 130 IACGFDINKT-FIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 183
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ + R+ I KP +L
Sbjct: 184 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP-KPALL 242
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 243 HSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 281
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 130 IACGFDINKT-FIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 183
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ + R+ I KP +L
Sbjct: 184 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP-KPALL 242
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 243 HSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 281
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 142 IACGFDINKT-FIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 195
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ + R+ I KP +L
Sbjct: 196 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP-KPALL 254
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 255 HSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 293
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 223 IACGFDINKT-FIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 276
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ + R+ I KP +L
Sbjct: 277 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP-KPALL 335
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 336 HSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 374
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 130 IACGFDINKT-FIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 183
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ + R+ I KP +L
Sbjct: 184 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP-KPALL 242
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 243 HSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 281
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 27/166 (16%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W +++C +G E
Sbjct: 54 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAW--------------MLQCIVYIGELE 98
Query: 171 Q-DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHH 229
+ +++A + YP + ADI DI +G DQ++ L R+ + ++ +
Sbjct: 99 RMTQVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY--FTIPEA 156
Query: 230 MLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+P L +KMSKSDP+ Y+ D+ + KIK +
Sbjct: 157 RIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSS 202
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 27/164 (16%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W +++C +G E
Sbjct: 54 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAW--------------MLQCIVYIGELE 98
Query: 171 Q-DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHH 229
+ +++A + YP + ADI DI +G DQ++ L R+ + ++ +
Sbjct: 99 RMTQVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY--FTIPEA 156
Query: 230 MLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIK 264
+P L +KMSKSDP+ Y+ D+ + KIK
Sbjct: 157 RIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK 200
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 200 GMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEV 259
G++Q LAR+ + +L LPGLQ KMS SDP+SAIY+ D A++
Sbjct: 294 GIEQDPYFRLARDLAPRMGHPKNAYLLGK-FLPGLQGSGTKMSASDPNSAIYLTDTPAQI 352
Query: 260 NVKIKK 265
KI +
Sbjct: 353 KNKINR 358
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 17/135 (12%)
Query: 163 CQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNK 222
+I + + + A +YP Q ADI A + +G DQ + RE
Sbjct: 132 AEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYA 191
Query: 223 PIILSHHM-------LPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKI--- 272
P++ LPGL GQ KMSKS +AI + D EV K+ Y P
Sbjct: 192 PVLAEPQAQLSRVPRLPGL-DGQAKMSKS-LGNAIALGDSADEVARKVMGMYTDPGHLRA 249
Query: 273 -----VEGNPCLEYI 282
VEGNP ++
Sbjct: 250 SDPGRVEGNPVFTFL 264
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 17/135 (12%)
Query: 163 CQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNK 222
+I + + + A +YP Q ADI A + +G DQ + RE
Sbjct: 112 AEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYA 171
Query: 223 PIILSHHM-------LPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKI--- 272
P++ LPGL GQ KMSKS +AI + D EV K+ Y P
Sbjct: 172 PVLAEPQAQLSRVPRLPGL-DGQAKMSKS-LGNAIALGDSADEVARKVMGMYTDPGHLRA 229
Query: 273 -----VEGNPCLEYI 282
VEGNP ++
Sbjct: 230 SDPGRVEGNPVFTFL 244
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 177 AQILYPCMQCADIFFLKADICQL--GMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGL 234
A+ + PC + F K +C + +DQ LAR+ + K KP + +LP L
Sbjct: 225 AKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEK-KPSSIYVSLLPDL 283
Query: 235 QQGQEKMSKSDPSSAIYMEDEEAEVNVKI 263
+ KMS SDP+S+IY++D + + KI
Sbjct: 284 KGVNRKMSASDPNSSIYLDDAQDTIRKKI 312
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 223 IACGFDINKT-FIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 276
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ R+ I KP +L
Sbjct: 277 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYP-KPALL 335
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q K S SDP+S+I++ D ++ K+ K
Sbjct: 336 HSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNK 374
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
R L +++AVG+ + SE + A A W L + + + R Q +S
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSE-VPAHAQAAWMLQCIVY----IGELERMTQFKEKSA 113
Query: 171 QDELTAAQIL-YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDI-KRKNKPIILSH 228
AA +L YP + ADI DI +G DQ++ L R+ + KR + +
Sbjct: 114 GAAAAAAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPE 173
Query: 229 HMLP-------GLQQGQEKMSKSDPSSAIYME--DEEAEVNVKIKKA 266
+P L +KMSKSDP+ Y+ D+ + KIK A
Sbjct: 174 ARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA 220
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 176 IACGFDINKT-FIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 229
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ R+ I KP +L
Sbjct: 230 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYP-KPALL 288
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q K S SDP+S+I++ D ++ K+ K
Sbjct: 289 HSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNK 327
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G + F++S + + ++ V+ I + ++ I G ++ D +
Sbjct: 223 IACGFDINKT-FIFSDLDYXGXSSGFYKNVVKIQKHVTFNQVK---GIFGFTDSDCI--G 276
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A IF + DI L +DQ R+ I KP +L
Sbjct: 277 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDVAPRIGYP-KPALL 335
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ Q K S SDP+S+I++ D ++ K+ K
Sbjct: 336 HSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNK 374
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 39/236 (16%)
Query: 55 GFEPSGRMHIAQ--GVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY 112
G + SG+ H+ GVM+++ C++ ++VAD + + LK+
Sbjct: 10 GIQASGKQHLGNYLGVMQSLIE---LQEQCQLFVFVADLHSITVDFQPQALKQ---NNFD 63
Query: 113 LIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGR-SEQ 171
L+ +AVG+ ++ S+ + Y +V ++ L + R Q + +EQ
Sbjct: 64 LVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMV-----QSNLGELQRMTQFKAKKAEQ 118
Query: 172 D-------ELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPI 224
+ + YP + DI + DI +G DQ++ L R+ I++K K
Sbjct: 119 TRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLK 178
Query: 225 ILSHHMLPGLQQGQE------------KMSKS--DPSSAIYMEDEEAEVNVKIKKA 266
+ LP Q ++ KMSKS + + IY++D + V KI++A
Sbjct: 179 L----RLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 200 GMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEV 259
+DQ + R+ D +K +KP +L P LQ KMS SD ++AI+M D ++
Sbjct: 256 AIDQDPYFRVCRDVADKLKY-SKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQI 314
Query: 260 NVKIKK 265
KI K
Sbjct: 315 QKKINK 320
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 200 GMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEV 259
+DQ + R+ D +K +KP +L P LQ KMS SD ++AI+M D ++
Sbjct: 256 AIDQDPYFRVCRDVADKLKY-SKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQI 314
Query: 260 NVKIKK 265
KI K
Sbjct: 315 QKKINK 320
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 20/236 (8%)
Query: 21 EEKFRLVRSIGEECIQEDELLNLLTKKPQPICYD-GFEPS-GRMHIAQGVMKAISVNKLT 78
EE L++ EE + E+ELL L K+ +P+ G +P+ +H+ V+ + +
Sbjct: 9 EEALALLKRGAEEIVPEEELLAKL-KEGRPLTVKLGADPTRPDLHLGHAVVLR-KMRQFQ 66
Query: 79 SAGCKVKIWVADWFAQLNNKMGGDLKKIQTV---GRYLIEIWIAVGMRTERVEFLWSSEE 135
G KV + + D+ + + G + R + ++A + R E
Sbjct: 67 ELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQE----PHL 122
Query: 136 INARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDE-------LTAAQILYPCMQCAD 188
R + W + +L +M Q++ R + + ++ ++LYP Q D
Sbjct: 123 FELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYD 182
Query: 189 IFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKS 244
++AD+ G DQR N+L ++ + +L GL G+EKMSKS
Sbjct: 183 SVAIRADVEMGGTDQR-FNLLVGREVQRAYGQSPQVCFLMPLLVGL-DGREKMSKS 236
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 23/160 (14%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMG-RSEQDELTA 176
IA G E + F++++ E A E +P ++ I ++ + C QI +D
Sbjct: 143 IACGFDPE-LTFIFTNLEYIA---ELYPDILRIEKK------ISCSQIKSIFGFKDSCNV 192
Query: 177 AQILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPII 225
+ +P +Q A IF + DI L +DQ + R+ + KP
Sbjct: 193 GKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYL-KPSS 251
Query: 226 LSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
+ LP LQ Q KMS S +S+I++ D E + KI K
Sbjct: 252 IHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMK 291
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 28/244 (11%)
Query: 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQT 108
+PI G +PSG + I + A+ + + V D A + D + +
Sbjct: 6 KPIVLSGVQPSGELSIG-NYLGALRQWQQMQDDYDCQYCVVDLHAITVRQ---DPQALHE 61
Query: 109 VGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGR 168
+ I +AVG+ ++ L+ + A W L ++ + R Q +
Sbjct: 62 ATLDALAICLAVGVDPKK-STLFVQSHVPEHAQLGWVLNC----YTQMGELSRMTQFKDK 116
Query: 169 SEQ--DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYC---DDIKRKNKP 223
S + +++ A YP + ADI A +G DQ++ LAR+ ++I +P
Sbjct: 117 SARYANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQP 176
Query: 224 II-LSHHMLP-------GLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKAY----CP 269
I + +P LQ +KMSKSD + + I + ++ + KI KA P
Sbjct: 177 IFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAETP 236
Query: 270 PKIV 273
P+I
Sbjct: 237 PRIA 240
>pdb|3HLX|A Chain A, Crystal Structure Of Pqqc Active Site Mutant Y175f In
Complex With Pqq
pdb|3HLX|D Chain D, Crystal Structure Of Pqqc Active Site Mutant Y175f In
Complex With Pqq
Length = 258
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 148 MDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL----------YPCMQCADIFFLKADIC 197
++ ARR C Q S EL A QI YP ++ FF ++ +
Sbjct: 129 LNFARRA-------CWQEAACSSLTELFAPQIHQSRLDSWPQHYPWIKEEGYFFFRSRLS 181
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNK 222
Q D LA+ YCD +++N+
Sbjct: 182 QANRDVEHGLALAKAYCDSAEKQNR 206
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 159 IMRCCQIMGRSEQ--DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCD- 215
+ R Q +S + + + A YP + ADI + + +G DQ++ L+R+
Sbjct: 116 LSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASR 175
Query: 216 ------DIKRKNKPII-LSHHMLPGLQQGQEKMSKSDP--SSAIYMEDEEAEVNVKIKKA 266
DI + +P I + + LQ +KMSKSD ++ I + ++ V KIK+A
Sbjct: 176 FNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRA 235
>pdb|3HML|A Chain A, Crystal Structure Of Pqqc Active Site Mutant H154s In
Complex With Pqq
pdb|3HML|B Chain B, Crystal Structure Of Pqqc Active Site Mutant H154s In
Complex With Pqq
Length = 258
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 148 MDIARRNKLPRIMRCCQIMGRSEQDELTAAQI----------LYPCMQCADIFFLKADIC 197
++ ARR C Q S EL A QI YP ++ F+ ++ +
Sbjct: 129 LNFARRA-------CWQEAACSSLTELFAPQISQSRLDSWPQHYPWIKEEGYFYFRSRLS 181
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNK 222
Q D LA+ YCD +++N+
Sbjct: 182 QANRDVEHGLALAKAYCDSAEKQNR 206
>pdb|1OTW|A Chain A, Crystal Structure Of Pqqc In Complex With Pqq And A
Putative H2o2
pdb|1OTW|B Chain B, Crystal Structure Of Pqqc In Complex With Pqq And A
Putative H2o2
Length = 255
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 148 MDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL----------YPCMQCADIFFLKADIC 197
++ ARR C Q S EL A QI YP ++ F+ ++ +
Sbjct: 130 LNFARRA-------CWQEAACSSLTELFAPQIHQSRLDSWPQHYPWIKEEGYFYFRSRLS 182
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNK 222
Q D LA+ YCD +++N+
Sbjct: 183 QANRDVEHGLALAKAYCDSAEKQNR 207
>pdb|1OTV|A Chain A, Pqqc, Pyrroloquinolinquinone Synthase C
pdb|1OTV|B Chain B, Pqqc, Pyrroloquinolinquinone Synthase C
Length = 259
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Query: 148 MDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL----------YPCMQCADIFFLKADIC 197
++ ARR C Q S EL A QI YP ++ F+ ++ +
Sbjct: 129 LNFARRA-------CWQEAACSSLTELFAPQIHQSRLDSWPQHYPWIKEEGYFYFRSRLS 181
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNK 222
Q D LA+ YCD +++N+
Sbjct: 182 QANRDVEHGLALAKAYCDSAEKQNR 206
>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
Of Burkholderia Cepacia Ac1100
Length = 515
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 47 KPQPICYDGFEPSGRMHIAQGVMKAI---------SVNKLTSAGCKVKIWVADWFAQLNN 97
KP P+ YD GR H Q M + S + S G WF +LNN
Sbjct: 356 KPNPLIYD----FGRAHFLQNQMSVMYELLDLAGRSSLMIPSEGQWDDSQSGQWFVKLNN 411
Query: 98 KMGGDLKKIQTVGRYLIEIWIA 119
G+ ++ +GR + ++++
Sbjct: 412 GPKGNPRERVQIGRVIRDLYLT 433
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 222 KPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
KP ++ PGL + KMS S +A+ + D E V KI K
Sbjct: 252 KPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVKDKINK 294
>pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii
Phosphosulfolactate Synthase
Length = 251
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 253 EDEEAEVNVKIKKAYCPPKIVEG--NPCLEYIKYIIFPWDKKFVVERS 298
ED + + V + K PPK VE C +YI ++ F W V++R
Sbjct: 9 EDFQRGLTVVLDKG-LPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRD 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,385,206
Number of Sequences: 62578
Number of extensions: 369929
Number of successful extensions: 918
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 65
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)