Query 047474
Match_columns 326
No_of_seqs 175 out of 1563
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:24:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00126 tyrosyl-tRNA syntheta 100.0 1.5E-83 3.2E-88 623.6 32.1 308 14-321 31-338 (383)
2 PRK08560 tyrosyl-tRNA syntheta 100.0 3.6E-77 7.9E-82 571.5 29.1 294 21-321 2-295 (329)
3 KOG2144 Tyrosyl-tRNA synthetas 100.0 5E-74 1.1E-78 521.8 15.8 298 16-321 2-306 (360)
4 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.3E-70 2.7E-75 561.8 30.0 297 18-321 1-312 (682)
5 PRK12285 tryptophanyl-tRNA syn 100.0 4E-61 8.8E-66 464.9 24.3 248 24-288 40-310 (368)
6 PRK12282 tryptophanyl-tRNA syn 100.0 2.1E-60 4.7E-65 455.3 23.1 245 49-321 2-266 (333)
7 PRK00927 tryptophanyl-tRNA syn 100.0 3.8E-60 8.2E-65 454.5 22.0 228 50-286 2-252 (333)
8 PF00579 tRNA-synt_1b: tRNA sy 100.0 2.7E-61 5.8E-66 455.3 13.7 264 48-321 4-273 (292)
9 cd00805 TyrRS_core catalytic c 100.0 7.7E-60 1.7E-64 440.5 22.5 240 50-320 1-252 (269)
10 cd00806 TrpRS_core catalytic c 100.0 7.8E-59 1.7E-63 435.8 20.1 233 51-290 1-250 (280)
11 COG0162 TyrS Tyrosyl-tRNA synt 100.0 8.6E-59 1.9E-63 449.9 18.2 294 18-320 2-320 (401)
12 TIGR00233 trpS tryptophanyl-tR 100.0 5.1E-58 1.1E-62 438.5 23.0 248 49-320 2-266 (328)
13 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 4.5E-58 9.9E-63 446.1 18.6 286 23-318 4-343 (377)
14 PRK12284 tryptophanyl-tRNA syn 100.0 2.3E-57 5E-62 441.3 23.1 225 51-286 4-253 (431)
15 PRK12556 tryptophanyl-tRNA syn 100.0 4.3E-57 9.2E-62 432.1 22.7 227 49-286 3-253 (332)
16 PRK05912 tyrosyl-tRNA syntheta 100.0 2.2E-56 4.7E-61 438.4 25.4 254 19-288 2-275 (408)
17 COG0180 TrpS Tryptophanyl-tRNA 100.0 6.3E-57 1.4E-61 423.1 20.5 232 48-286 4-253 (314)
18 PLN02886 aminoacyl-tRNA ligase 100.0 6E-57 1.3E-61 435.6 20.6 228 49-285 46-307 (389)
19 PTZ00348 tyrosyl-tRNA syntheta 100.0 5.9E-57 1.3E-61 461.3 21.0 230 79-320 405-634 (682)
20 cd00395 Tyr_Trp_RS_core cataly 100.0 4.1E-56 8.9E-61 415.9 20.4 227 51-291 1-244 (273)
21 PLN02486 aminoacyl-tRNA ligase 100.0 1.1E-55 2.3E-60 428.2 23.2 247 26-286 49-323 (383)
22 PRK13354 tyrosyl-tRNA syntheta 100.0 3E-55 6.6E-60 430.0 25.3 254 18-288 3-273 (410)
23 PRK12283 tryptophanyl-tRNA syn 100.0 1.1E-55 2.4E-60 426.3 20.7 224 51-285 4-316 (398)
24 KOG2713 Mitochondrial tryptoph 100.0 4.4E-49 9.6E-54 358.1 19.0 229 50-286 14-268 (347)
25 KOG2145 Cytoplasmic tryptophan 100.0 4.6E-43 1E-47 319.6 12.8 271 28-319 63-361 (397)
26 KOG2623 Tyrosyl-tRNA synthetas 100.0 3.1E-37 6.8E-42 291.1 18.9 252 23-287 33-315 (467)
27 cd00802 class_I_aaRS_core cata 99.6 2.5E-15 5.4E-20 127.4 8.5 63 181-245 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.5 8.2E-13 1.8E-17 121.3 15.6 191 57-284 9-211 (239)
29 PRK00750 lysK lysyl-tRNA synth 99.3 2.2E-11 4.7E-16 123.5 14.3 236 51-320 26-339 (510)
30 cd00418 GlxRS_core catalytic c 99.1 3.8E-09 8.3E-14 96.6 16.0 189 57-284 9-202 (230)
31 cd00674 LysRS_core_class_I cat 99.0 2.8E-08 6E-13 96.4 18.2 193 51-254 22-288 (353)
32 TIGR00467 lysS_arch lysyl-tRNA 98.6 6.2E-07 1.3E-11 91.1 14.0 83 51-136 21-129 (515)
33 PF01921 tRNA-synt_1f: tRNA sy 98.5 7.1E-07 1.5E-11 86.3 10.9 239 51-318 26-341 (360)
34 PRK04156 gltX glutamyl-tRNA sy 98.3 2.8E-05 6E-10 79.7 16.1 215 17-245 60-343 (567)
35 COG1384 LysS Lysyl-tRNA synthe 98.1 5.1E-05 1.1E-09 75.9 13.6 108 190-319 226-337 (521)
36 cd00671 ArgRS_core catalytic c 98.1 7E-05 1.5E-09 67.7 13.4 177 53-245 6-211 (212)
37 PRK05710 glutamyl-Q tRNA(Asp) 98.0 0.00015 3.3E-09 68.9 14.7 182 57-254 13-248 (299)
38 PRK14895 gltX glutamyl-tRNA sy 98.0 0.00031 6.7E-09 71.3 16.5 86 193-284 196-288 (513)
39 cd00672 CysRS_core catalytic c 98.0 0.0002 4.3E-09 65.0 13.7 151 51-254 23-187 (213)
40 cd09287 GluRS_non_core catalyt 98.0 7.3E-05 1.6E-09 68.9 11.0 161 54-246 6-172 (240)
41 PRK00260 cysS cysteinyl-tRNA s 97.9 9.4E-05 2E-09 74.6 11.3 75 48-125 22-110 (463)
42 PRK01406 gltX glutamyl-tRNA sy 97.9 0.00057 1.2E-08 69.2 16.9 100 181-286 192-301 (476)
43 TIGR00464 gltX_bact glutamyl-t 97.9 0.00083 1.8E-08 67.9 17.8 91 192-287 196-293 (470)
44 TIGR03838 queuosine_YadB gluta 97.8 0.0015 3.2E-08 61.5 16.2 177 57-247 8-236 (272)
45 PRK01611 argS arginyl-tRNA syn 97.7 0.00036 7.7E-09 71.2 12.5 193 52-254 116-335 (507)
46 cd00807 GlnRS_core catalytic c 97.7 0.00045 9.7E-09 63.6 11.1 156 57-246 9-170 (238)
47 TIGR00435 cysS cysteinyl-tRNA 97.5 0.0033 7.1E-08 63.6 15.9 77 185-265 211-294 (465)
48 PRK12410 glutamylglutaminyl-tR 97.5 0.0011 2.4E-08 66.1 12.1 70 192-265 189-264 (433)
49 PLN02627 glutamyl-tRNA synthet 97.3 0.012 2.5E-07 60.3 16.5 87 193-284 249-342 (535)
50 PRK12558 glutamyl-tRNA synthet 97.2 0.015 3.1E-07 58.5 16.2 73 193-270 196-275 (445)
51 PF00749 tRNA-synt_1c: tRNA sy 97.1 0.0088 1.9E-07 57.4 13.3 55 192-249 198-252 (314)
52 COG0008 GlnS Glutamyl- and glu 97.0 0.0098 2.1E-07 60.1 12.7 56 193-253 206-261 (472)
53 PLN03233 putative glutamate-tR 97.0 0.011 2.5E-07 60.2 12.9 50 192-245 202-251 (523)
54 PLN02859 glutamine-tRNA ligase 96.8 0.041 9E-07 58.5 16.1 50 193-246 456-505 (788)
55 PRK14536 cysS cysteinyl-tRNA s 96.8 0.019 4.2E-07 58.3 13.2 76 184-263 224-307 (490)
56 PF01406 tRNA-synt_1e: tRNA sy 96.8 0.086 1.9E-06 50.2 16.4 197 52-254 12-265 (300)
57 PTZ00402 glutamyl-tRNA synthet 96.8 0.016 3.5E-07 59.9 12.1 51 192-246 244-294 (601)
58 PRK14535 cysS cysteinyl-tRNA s 96.5 0.028 6E-07 58.9 12.0 79 183-265 436-537 (699)
59 PLN02907 glutamate-tRNA ligase 96.4 0.035 7.6E-07 59.0 12.0 50 192-245 404-453 (722)
60 PLN02946 cysteine-tRNA ligase 96.4 0.04 8.6E-07 56.8 11.9 67 183-253 267-335 (557)
61 PRK05347 glutaminyl-tRNA synth 96.3 0.092 2E-06 54.0 13.9 52 192-246 225-276 (554)
62 TIGR00440 glnS glutaminyl-tRNA 96.0 0.18 3.9E-06 51.6 14.6 96 192-290 196-313 (522)
63 TIGR00463 gltX_arch glutamyl-t 95.9 0.13 2.8E-06 53.2 13.0 51 192-245 284-334 (560)
64 PRK14534 cysS cysteinyl-tRNA s 95.8 0.12 2.5E-06 52.6 12.1 65 186-254 226-292 (481)
65 cd00668 Ile_Leu_Val_MetRS_core 95.7 0.011 2.3E-07 56.5 4.2 59 193-254 226-286 (312)
66 cd00812 LeuRS_core catalytic c 94.4 0.022 4.7E-07 54.6 2.0 58 193-254 224-288 (314)
67 cd00817 ValRS_core catalytic c 94.4 0.031 6.7E-07 55.0 3.1 59 193-254 296-356 (382)
68 PTZ00437 glutaminyl-tRNA synth 94.2 0.4 8.7E-06 49.5 10.7 90 36-136 37-127 (574)
69 cd00818 IleRS_core catalytic c 94.0 0.052 1.1E-06 52.6 3.8 58 193-254 252-312 (338)
70 cd02156 nt_trans nucleotidyl t 93.7 0.25 5.4E-06 39.3 6.6 64 52-123 2-65 (105)
71 PF00133 tRNA-synt_1: tRNA syn 93.7 0.048 1E-06 56.9 3.1 60 192-254 513-574 (601)
72 COG0143 MetG Methionyl-tRNA sy 93.7 0.35 7.6E-06 50.0 9.2 95 52-148 9-114 (558)
73 PRK05743 ileS isoleucyl-tRNA s 93.6 0.06 1.3E-06 58.9 3.8 70 191-264 543-620 (912)
74 TIGR00392 ileS isoleucyl-tRNA 93.3 0.13 2.7E-06 56.1 5.5 71 192-266 563-641 (861)
75 PF09334 tRNA-synt_1g: tRNA sy 93.2 0.4 8.7E-06 47.5 8.5 90 57-148 9-108 (391)
76 PRK00133 metG methionyl-tRNA s 92.8 0.35 7.6E-06 51.2 7.8 76 51-126 5-90 (673)
77 PRK11893 methionyl-tRNA synthe 92.8 0.066 1.4E-06 54.4 2.4 68 193-265 254-328 (511)
78 PRK14703 glutaminyl-tRNA synth 92.3 1 2.2E-05 48.3 10.5 50 193-245 228-278 (771)
79 PRK13208 valS valyl-tRNA synth 91.6 0.16 3.6E-06 54.7 3.8 68 193-264 486-561 (800)
80 PLN02843 isoleucyl-tRNA synthe 91.3 0.18 4E-06 55.5 3.8 58 191-252 562-622 (974)
81 PRK12268 methionyl-tRNA synthe 91.2 0.62 1.3E-05 48.1 7.4 77 50-126 4-92 (556)
82 PRK13804 ileS isoleucyl-tRNA s 91.2 0.18 3.8E-06 55.6 3.5 70 192-265 582-659 (961)
83 PLN02224 methionine-tRNA ligas 90.7 2 4.2E-05 45.2 10.5 75 52-126 73-157 (616)
84 PRK14900 valS valyl-tRNA synth 90.6 0.2 4.3E-06 55.7 3.2 70 192-265 490-567 (1052)
85 PRK12418 cysteinyl-tRNA synthe 90.5 0.24 5.1E-06 49.0 3.4 67 183-253 204-273 (384)
86 COG0215 CysS Cysteinyl-tRNA sy 90.4 0.22 4.8E-06 50.0 3.1 77 183-264 211-296 (464)
87 PLN02959 aminoacyl-tRNA ligase 90.3 0.28 6.1E-06 54.7 4.1 69 191-264 669-746 (1084)
88 PRK06039 ileS isoleucyl-tRNA s 90.2 0.27 5.8E-06 54.3 3.9 70 192-265 544-621 (975)
89 TIGR03447 mycothiol_MshC cyste 90.2 0.24 5.2E-06 49.3 3.1 81 52-136 40-132 (411)
90 TIGR00422 valS valyl-tRNA synt 90.0 0.27 5.9E-06 53.5 3.6 68 192-265 477-554 (861)
91 cd00814 MetRS_core catalytic c 89.7 0.54 1.2E-05 45.0 5.1 70 57-126 10-88 (319)
92 PRK05729 valS valyl-tRNA synth 89.3 0.27 6E-06 53.6 3.0 70 192-265 472-549 (874)
93 PRK00390 leuS leucyl-tRNA synt 89.0 1.3 2.9E-05 47.9 7.9 77 49-125 33-119 (805)
94 PRK12300 leuS leucyl-tRNA synt 88.9 0.3 6.6E-06 53.4 3.0 69 192-265 529-606 (897)
95 TIGR00398 metG methionyl-tRNA 88.6 1.8 3.8E-05 44.4 8.2 68 57-126 9-87 (530)
96 PLN02943 aminoacyl-tRNA ligase 88.5 0.41 9E-06 52.7 3.7 70 192-265 535-612 (958)
97 cd00814 MetRS_core catalytic c 88.4 2.5 5.3E-05 40.5 8.6 57 194-254 236-293 (319)
98 PLN02610 probable methionyl-tR 88.1 2 4.3E-05 46.6 8.4 80 52-133 21-111 (801)
99 cd00818 IleRS_core catalytic c 87.9 1.1 2.4E-05 43.3 6.0 34 57-90 11-47 (338)
100 PTZ00419 valyl-tRNA synthetase 87.9 0.44 9.5E-06 52.7 3.5 58 192-253 537-597 (995)
101 COG0495 LeuS Leucyl-tRNA synth 87.9 1.4 3.1E-05 47.4 7.2 99 19-125 9-121 (814)
102 PLN02381 valyl-tRNA synthetase 87.9 0.46 1E-05 52.9 3.6 59 192-254 607-668 (1066)
103 TIGR00395 leuS_arch leucyl-tRN 87.7 0.92 2E-05 49.9 5.8 70 192-266 572-650 (938)
104 TIGR00396 leuS_bact leucyl-tRN 87.7 1.7 3.6E-05 47.4 7.7 75 51-125 32-116 (842)
105 PTZ00399 cysteinyl-tRNA-synthe 87.5 0.42 9.1E-06 50.4 2.9 78 183-265 258-344 (651)
106 KOG1147 Glutamyl-tRNA syntheta 87.1 2.1 4.6E-05 43.8 7.3 72 52-136 201-276 (712)
107 KOG1148 Glutaminyl-tRNA synthe 87.0 4.8 0.0001 41.7 9.9 116 35-162 233-353 (764)
108 COG0495 LeuS Leucyl-tRNA synth 87.0 0.59 1.3E-05 50.3 3.7 74 192-270 525-611 (814)
109 PLN02286 arginine-tRNA ligase 86.5 1.2 2.6E-05 46.4 5.6 57 196-255 331-392 (576)
110 PRK11893 methionyl-tRNA synthe 86.5 2.9 6.3E-05 42.4 8.3 76 57-134 11-95 (511)
111 cd00817 ValRS_core catalytic c 86.4 2.2 4.7E-05 42.0 7.1 40 52-91 5-48 (382)
112 PLN02563 aminoacyl-tRNA ligase 86.3 0.31 6.8E-06 53.6 1.2 43 191-233 614-664 (963)
113 TIGR00456 argS arginyl-tRNA sy 85.7 1.1 2.4E-05 46.5 4.8 64 193-261 326-392 (566)
114 TIGR00396 leuS_bact leucyl-tRN 85.5 0.27 5.8E-06 53.4 0.2 71 192-264 519-632 (842)
115 PLN02882 aminoacyl-tRNA ligase 85.5 0.85 1.8E-05 51.3 4.1 69 192-264 566-642 (1159)
116 PRK12267 methionyl-tRNA synthe 84.7 0.6 1.3E-05 49.2 2.4 68 193-265 254-328 (648)
117 PRK12268 methionyl-tRNA synthe 84.2 0.74 1.6E-05 47.5 2.7 67 195-265 289-363 (556)
118 PTZ00427 isoleucine-tRNA ligas 84.1 0.93 2E-05 51.1 3.6 76 174-253 652-732 (1205)
119 COG0060 IleS Isoleucyl-tRNA sy 83.4 1.6 3.5E-05 47.7 4.9 54 194-251 556-612 (933)
120 PRK12267 methionyl-tRNA synthe 83.3 6 0.00013 41.7 9.1 76 57-134 14-98 (648)
121 COG0525 ValS Valyl-tRNA synthe 82.2 0.99 2.1E-05 48.8 2.8 39 57-95 43-84 (877)
122 cd00812 LeuRS_core catalytic c 82.1 3.4 7.4E-05 39.5 6.2 66 57-125 10-87 (314)
123 cd00668 Ile_Leu_Val_MetRS_core 81.5 1.6 3.6E-05 41.5 3.8 33 57-89 10-45 (312)
124 PLN02224 methionine-tRNA ligas 80.2 1.6 3.4E-05 45.9 3.3 69 193-266 321-396 (616)
125 cd02168 NMNAT_Nudix Nicotinami 79.8 8.3 0.00018 34.0 7.4 71 52-134 3-76 (181)
126 TIGR00422 valS valyl-tRNA synt 79.8 4 8.8E-05 44.5 6.5 43 51-93 36-82 (861)
127 PRK00390 leuS leucyl-tRNA synt 79.7 0.93 2E-05 49.1 1.6 65 192-265 522-599 (805)
128 PTZ00419 valyl-tRNA synthetase 79.5 5.1 0.00011 44.5 7.2 43 51-93 63-109 (995)
129 KOG0435 Leucyl-tRNA synthetase 79.0 2.2 4.8E-05 44.8 3.9 66 51-123 60-142 (876)
130 cd00560 PanC Pantoate-beta-ala 78.7 12 0.00027 35.3 8.6 66 193-266 141-206 (277)
131 PF09334 tRNA-synt_1g: tRNA sy 78.5 2 4.4E-05 42.5 3.4 53 196-253 285-339 (391)
132 COG5309 Exo-beta-1,3-glucanase 78.5 9.6 0.00021 35.9 7.5 115 4-125 51-173 (305)
133 TIGR00398 metG methionyl-tRNA 78.4 2 4.3E-05 44.0 3.5 65 196-264 285-355 (530)
134 PRK14900 valS valyl-tRNA synth 78.3 2.4 5.1E-05 47.4 4.2 43 51-93 51-97 (1052)
135 PLN02943 aminoacyl-tRNA ligase 78.1 2.7 5.9E-05 46.4 4.6 42 52-93 92-137 (958)
136 PRK12418 cysteinyl-tRNA synthe 77.9 17 0.00038 35.9 9.7 92 52-148 13-116 (384)
137 PLN02563 aminoacyl-tRNA ligase 77.5 8.2 0.00018 42.7 8.0 75 51-125 113-198 (963)
138 PRK05729 valS valyl-tRNA synth 76.6 3 6.5E-05 45.6 4.4 45 49-93 36-85 (874)
139 PF00750 tRNA-synt_1d: tRNA sy 76.1 2.8 6.1E-05 40.9 3.7 69 193-263 237-310 (354)
140 PRK13208 valS valyl-tRNA synth 75.7 4.1 8.9E-05 44.1 5.0 41 51-91 41-85 (800)
141 COG0018 ArgS Arginyl-tRNA synt 74.4 4.1 8.9E-05 42.5 4.5 66 193-260 333-402 (577)
142 PRK12451 arginyl-tRNA syntheta 73.9 5.4 0.00012 41.4 5.3 58 193-254 323-384 (562)
143 TIGR00392 ileS isoleucyl-tRNA 73.3 7.6 0.00016 42.4 6.4 40 50-89 38-81 (861)
144 PTZ00399 cysteinyl-tRNA-synthe 72.2 20 0.00043 38.0 9.0 84 57-147 67-168 (651)
145 PLN02843 isoleucyl-tRNA synthe 69.5 13 0.00028 41.3 7.2 76 51-126 35-136 (974)
146 PRK00133 metG methionyl-tRNA s 69.3 4 8.7E-05 43.3 3.1 63 196-265 287-358 (673)
147 PF00133 tRNA-synt_1: tRNA syn 69.2 6.8 0.00015 41.0 4.8 39 51-89 26-68 (601)
148 TIGR03447 mycothiol_MshC cyste 68.7 45 0.00098 33.4 10.2 66 183-252 231-299 (411)
149 TIGR00018 panC pantoate--beta- 67.0 47 0.001 31.5 9.5 67 192-266 142-208 (282)
150 KOG0432 Valyl-tRNA synthetase 65.7 3.3 7.2E-05 44.6 1.6 43 206-254 564-606 (995)
151 PLN02381 valyl-tRNA synthetase 64.6 6.2 0.00014 44.2 3.6 43 51-93 131-177 (1066)
152 PF00750 tRNA-synt_1d: tRNA sy 63.9 9.5 0.00021 37.2 4.3 35 52-86 25-62 (354)
153 KOG0433 Isoleucyl-tRNA synthet 62.5 9.1 0.0002 40.8 4.0 53 194-250 567-622 (937)
154 COG0143 MetG Methionyl-tRNA sy 62.0 6.5 0.00014 40.8 2.9 65 196-265 291-362 (558)
155 PLN02610 probable methionyl-tR 60.6 8.8 0.00019 41.7 3.7 67 196-266 304-379 (801)
156 TIGR00456 argS arginyl-tRNA sy 60.3 11 0.00023 39.3 4.2 40 52-91 117-161 (566)
157 COG0525 ValS Valyl-tRNA synthe 60.1 8.8 0.00019 41.8 3.5 57 194-254 479-538 (877)
158 cd02166 NMNAT_Archaea Nicotina 59.3 69 0.0015 27.5 8.5 73 52-134 3-76 (163)
159 KOG2007 Cysteinyl-tRNA synthet 58.0 6.7 0.00015 39.9 2.1 79 182-264 247-333 (586)
160 KOG0432 Valyl-tRNA synthetase 56.6 9.6 0.00021 41.3 3.1 37 59-95 87-126 (995)
161 COG0018 ArgS Arginyl-tRNA synt 56.1 14 0.00031 38.5 4.2 42 52-93 122-168 (577)
162 PRK06039 ileS isoleucyl-tRNA s 55.7 9.8 0.00021 42.2 3.2 39 51-89 44-86 (975)
163 PRK05743 ileS isoleucyl-tRNA s 54.2 11 0.00023 41.6 3.1 42 51-92 52-97 (912)
164 TIGR00395 leuS_arch leucyl-tRN 54.2 9.6 0.00021 42.1 2.8 39 50-88 27-69 (938)
165 PLN02286 arginine-tRNA ligase 53.9 15 0.00033 38.3 4.1 38 53-91 123-166 (576)
166 PRK12451 arginyl-tRNA syntheta 53.7 16 0.00034 38.0 4.1 39 53-91 119-162 (562)
167 COG0414 PanC Panthothenate syn 53.2 49 0.0011 31.3 6.8 67 192-266 141-207 (285)
168 PRK13804 ileS isoleucyl-tRNA s 52.2 12 0.00027 41.4 3.2 39 51-89 57-99 (961)
169 PTZ00427 isoleucine-tRNA ligas 47.2 18 0.0004 41.0 3.6 38 52-89 106-147 (1205)
170 PRK05379 bifunctional nicotina 45.7 1E+02 0.0022 29.9 8.1 69 52-134 10-81 (340)
171 COG3959 Transketolase, N-termi 45.1 41 0.00088 31.0 4.8 73 34-112 86-168 (243)
172 cd06404 PB1_aPKC PB1 domain is 43.5 52 0.0011 25.4 4.5 32 287-318 35-66 (83)
173 PLN02882 aminoacyl-tRNA ligase 41.7 23 0.00051 40.1 3.3 39 51-89 41-83 (1159)
174 PLN02660 pantoate--beta-alanin 41.5 1.5E+02 0.0032 28.2 8.2 67 192-266 145-211 (284)
175 PLN02959 aminoacyl-tRNA ligase 39.4 19 0.00041 40.5 2.2 35 57-92 55-92 (1084)
176 PF02662 FlpD: Methyl-viologen 38.9 1.8E+02 0.0038 23.9 7.4 54 79-134 50-103 (124)
177 PRK13793 nicotinamide-nucleoti 37.0 49 0.0011 29.7 4.0 36 51-93 7-43 (196)
178 KOG0436 Methionyl-tRNA synthet 36.2 1.7E+02 0.0036 29.7 7.8 89 56-148 48-148 (578)
179 COG1504 Uncharacterized conser 35.5 1.1E+02 0.0024 25.1 5.4 63 19-87 30-95 (121)
180 cd06545 GH18_3CO4_chitinase Th 34.3 1.7E+02 0.0037 26.6 7.5 73 52-124 29-102 (253)
181 cd06546 GH18_CTS3_chitinase GH 32.5 2.1E+02 0.0047 26.4 7.8 78 52-131 36-120 (256)
182 TIGR00234 tyrS tyrosyl-tRNA sy 31.8 29 0.00062 34.3 1.9 37 205-243 193-232 (377)
183 COG3060 MetJ Transcriptional r 31.3 41 0.00089 26.0 2.2 36 91-126 63-102 (105)
184 PRK01153 nicotinamide-nucleoti 31.2 2.1E+02 0.0044 25.0 7.0 72 52-134 4-77 (174)
185 PRK05370 argininosuccinate syn 29.1 3.4E+02 0.0074 27.5 8.9 49 73-134 27-75 (447)
186 cd00598 GH18_chitinase-like Th 28.1 3E+02 0.0065 23.7 7.7 51 74-124 55-107 (210)
187 cd06542 GH18_EndoS-like Endo-b 26.3 1.9E+02 0.0041 26.3 6.3 51 74-124 57-107 (255)
188 KOG4238 Bifunctional ATP sulfu 25.9 2.7E+02 0.0058 27.8 7.2 62 35-97 401-463 (627)
189 COG0215 CysS Cysteinyl-tRNA sy 24.3 2E+02 0.0043 29.3 6.3 72 50-123 23-106 (464)
190 COG1056 NadR Nicotinamide mono 24.2 2.4E+02 0.0052 24.8 6.1 70 52-134 7-79 (172)
191 COG0060 IleS Isoleucyl-tRNA sy 23.3 45 0.00097 36.9 1.6 41 47-87 46-92 (933)
192 PF06925 MGDG_synth: Monogalac 23.2 89 0.0019 26.6 3.2 81 38-129 79-164 (169)
193 PRK03620 5-dehydro-4-deoxygluc 23.0 4.6E+02 0.01 24.7 8.4 91 10-131 49-139 (303)
194 PRK00777 phosphopantetheine ad 23.0 98 0.0021 26.4 3.4 49 193-245 88-137 (153)
195 COG1832 Predicted CoA-binding 22.8 2.5E+02 0.0054 23.9 5.6 45 35-87 4-49 (140)
196 TIGR03249 KdgD 5-dehydro-4-deo 22.5 4.8E+02 0.01 24.4 8.3 86 10-123 47-132 (296)
197 PF06415 iPGM_N: BPG-independe 22.1 4.7E+02 0.01 23.9 7.8 81 34-122 10-95 (223)
198 COG2861 Uncharacterized protei 22.0 1.6E+02 0.0036 27.3 4.8 41 222-269 78-118 (250)
199 PF13344 Hydrolase_6: Haloacid 21.9 2.4E+02 0.0053 21.9 5.3 61 56-133 3-67 (101)
200 PTZ00397 macrophage migration 21.6 4.1E+02 0.009 21.0 7.8 75 38-132 26-101 (116)
201 smart00636 Glyco_18 Glycosyl h 21.0 3E+02 0.0065 26.0 6.7 73 52-124 32-110 (334)
202 PF03308 ArgK: ArgK protein; 20.5 7.2E+02 0.016 23.4 8.8 83 39-124 18-124 (266)
203 cd00951 KDGDH 5-dehydro-4-deox 20.3 5.4E+02 0.012 24.0 8.2 92 10-132 42-133 (289)
204 cd00490 Met_repressor_MetJ Met 20.1 66 0.0014 25.1 1.5 35 91-125 62-100 (103)
205 PF04914 DltD_C: DltD C-termin 20.0 1.2E+02 0.0025 25.4 3.1 49 74-122 42-90 (130)
No 1
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-83 Score=623.64 Aligned_cols=308 Identities=66% Similarity=1.102 Sum_probs=293.1
Q ss_pred CCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEeccee
Q 047474 14 STPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFA 93 (326)
Q Consensus 14 ~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a 93 (326)
+++.|+++||+++|+|+++|+++++||+++|++++++++|+|++|||++||||+++.+++|++||++||+++++||||||
T Consensus 31 ~~~~~~~~e~~~~i~r~~~e~i~~eel~~~l~~~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA 110 (383)
T PTZ00126 31 PQSKLSLEERVKLCLSIGEECIQPEELRELLKLKERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFA 110 (383)
T ss_pred CCCCCCHHHHHHHHhcCceeecCHHHHHHHHhcCCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEcccee
Confidence 45679999999999999999999999999998776788999999999999999877766899999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCc
Q 047474 94 QLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDE 173 (326)
Q Consensus 94 ~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~ 173 (326)
+++|++|+++++++++++|++++|+|+|+||+|++||+||+|+++|+.+||.+++++++++++++|+|+.++++|.+.+.
T Consensus 111 ~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~ 190 (383)
T PTZ00126 111 LLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDE 190 (383)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876566
Q ss_pred cchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecC
Q 047474 174 LTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYME 253 (326)
Q Consensus 174 ~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~ 253 (326)
.++|+|+||+|||||++++++|++|||.||++|++||||+++++|+.++|+++++|+||||++|++|||||+++++|||+
T Consensus 191 ~~~g~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~ 270 (383)
T PTZ00126 191 QPCAQILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAIFME 270 (383)
T ss_pred CCchhhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCeecCC
Confidence 78999999999999999999999999999999999999999999976788999999999998787899999998899999
Q ss_pred CCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 254 DEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 254 D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
|+|++|++||++|||+|+++++||+++|+++++||+.+.|.|+|++++||+++|.++|||+++|.+.-
T Consensus 271 Dspe~I~kKI~kA~t~p~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~ 338 (383)
T PTZ00126 271 DSEEDVNRKIKKAYCPPGVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGA 338 (383)
T ss_pred CCHHHHHHHHHhCcCCCCCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998754
No 2
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.6e-77 Score=571.46 Aligned_cols=294 Identities=43% Similarity=0.718 Sum_probs=274.7
Q ss_pred HHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCC
Q 047474 21 EEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMG 100 (326)
Q Consensus 21 ~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~ 100 (326)
++|+++++|+++|+++++||+++|++++++++|+|++|||.+||||++ .+.++++||++|++++|+||||||+++++
T Consensus 2 ~~~~~~~~~~~~e~~~~~el~~~l~~~~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~-- 78 (329)
T PRK08560 2 EERLELITRNTEEVVTEEELRELLESKEEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDK-- 78 (329)
T ss_pred hHHHHHHHhCceeecCHHHHHHHHhCCCCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCC--
Confidence 689999999999999999999999877778899999999999999965 44579999999999999999999999985
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhh
Q 047474 101 GDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL 180 (326)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~ 180 (326)
.+++++++++++++++|+|+|+||+|++||+||+|. ++.+ ||.+++++++++++++++|+.++++|... ..++|+|+
T Consensus 79 ~~~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~-~~~~-~~~~~~~l~~~~~~~~l~r~~~~~~~~~~-~~~~g~l~ 155 (329)
T PRK08560 79 GDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQ-LDKE-YWLLVLKLAKNTTLARARRSMTIMGRRME-EPDVSKLV 155 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChhheEEEecchhh-ccch-HHHHHHHHHhhccHHHHHHhhhhhcccCC-CCCHHHHH
Confidence 699999999999999999999999999999999965 6654 99999999999999999999888887543 34999999
Q ss_pred hhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHH
Q 047474 181 YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260 (326)
Q Consensus 181 YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~ 260 (326)
||+|||||++++++|+||||.||++|++++|++++|+|+. +|+++++|+||||+++++|||||+|+|+|||+|+|++|+
T Consensus 156 YP~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~-~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~ 234 (329)
T PRK08560 156 YPLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYK-KPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIR 234 (329)
T ss_pred HHHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCC-CceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHHHHH
Confidence 9999999999999999999999999999999999999975 799999999999955445999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 261 VKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 261 ~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
+||++|||+|+++++|||++|++++++|+.+.++|+|++++||+++|.+++||+++|.+.-
T Consensus 235 ~KI~kA~t~~~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~ 295 (329)
T PRK08560 235 RKIKKAYCPPGEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGK 295 (329)
T ss_pred HHHHhccCCCCCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999998753
No 3
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-74 Score=521.80 Aligned_cols=298 Identities=37% Similarity=0.515 Sum_probs=266.3
Q ss_pred CCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeee
Q 047474 16 PQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95 (326)
Q Consensus 16 ~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~ 95 (326)
+++++|+|+.||+||++||+.+++|+++|++ +.+.+|||++|||+||+|+.++ +.++++|.+|||+|+|++|||||++
T Consensus 2 ms~~~eek~~lItrnlqE~lgee~lk~iL~e-r~l~~YwGtaptGrpHiay~vp-m~kiadflkAGC~VtIl~AD~hA~L 79 (360)
T KOG2144|consen 2 MSEEPEEKYKLITRNLQEVLGEEELKNILAE-RALKCYWGTAPTGRPHIAYFVP-MMKIADFLKAGCEVTILFADLHAFL 79 (360)
T ss_pred CCCCHHHHHHHHHHHHHHHhCHHHHHHHHhc-cCceeeecCCCCCCcceeeeee-hhHHHHHHhcCCeEEEEehHHHHHH
Confidence 4678999999999999999999999999987 7899999999999999999654 4599999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHH-HH---HHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccccc
Q 047474 96 NNKMGGDLKKIQTVGRYLIE-IW---IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQ 171 (326)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~-~~---~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~ 171 (326)
+|. ...++.+..++.|+.. .+ ...+++.++..|+.+|+ + +. ..||.+.+...+.++..+..++.+...+.+-
T Consensus 80 dNm-kap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~-y-q~-sk~ytld~~rl~~~~~~hdak~agaevvkqv 155 (360)
T KOG2144|consen 80 DNM-KAPDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSN-Y-QL-SKYYTLDMYRLSSNVTQHDAKKAGAEVVKQV 155 (360)
T ss_pred hcc-cchHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccc-c-cc-CccchhhHHHHHhhccHhHHHHhhhhHHHhh
Confidence 985 4566666666655443 33 33467778888999998 5 55 4588888888888888888888888887766
Q ss_pred CccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCcee
Q 047474 172 DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIY 251 (326)
Q Consensus 172 ~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~ 251 (326)
+...++.++||+|||+|++++++|+|+||.|||+++++||++++.+|++ +|+++++||||||++| +|||||+|.|+|+
T Consensus 156 e~plls~llYP~MQalDe~~L~vD~qfgGvDQRKIf~~A~eylp~l~yk-KrihLmnpMvPGL~q~-~KMSsSd~~SkId 233 (360)
T KOG2144|consen 156 ENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQRKIFVLAEEYLPDLGYK-KRIHLMNPMVPGLAQG-EKMSSSDPLSKID 233 (360)
T ss_pred cchhhhhhhhhhHHHhhHHHHhhhHHhcCccHHHHHHHHHHhhhhhCcc-cceeecCCCCcccccc-CccccCCcccccc
Confidence 6789999999999999999999999999999999999999999999987 8999999999999655 7999999999999
Q ss_pred cCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCc---eeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 252 MEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK---FVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 252 L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~---~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
|.|+|++|.+||+||||+|+++++|||++|++|++||++.. +.|.|++++||+++|.+||+++.||+.+.
T Consensus 234 llD~~~~V~kKI~kAfCePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~ 306 (360)
T KOG2144|consen 234 LLDEPADVNKKIKKAFCEPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGE 306 (360)
T ss_pred cccCHHHHHHHHHHhcCCCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998865 57889999999999999999999998764
No 4
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-70 Score=561.85 Aligned_cols=297 Identities=60% Similarity=1.059 Sum_probs=270.7
Q ss_pred CCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecC
Q 047474 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNN 97 (326)
Q Consensus 18 ~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~ 97 (326)
||.|||+++|+|+++||++++||+++|++++++++|+||+|||.+||||+++..++++.++++|++++++||||||++++
T Consensus 1 ~~~~e~~~ll~r~~~Evi~~eeL~~ll~~~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~ 80 (682)
T PTZ00348 1 MNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMND 80 (682)
T ss_pred CCHHHHHHHHhcCceeecCHHHHHHHHhcCCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCC
Confidence 68899999999999999999999999987777889999999999999998666667777888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchh
Q 047474 98 KMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177 (326)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~ 177 (326)
+.++++++++.+++|++++|+|+|+||+|++||+||+|+++|+++||.+++++++++++++++++.+++++.+ +.+++|
T Consensus 81 ~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~-~~i~~g 159 (682)
T PTZ00348 81 KVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTE-GTLTAA 159 (682)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccC-CCCchH
Confidence 8889999999999999999999999999999999999999999999999999999999999999877666643 247999
Q ss_pred hhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHH
Q 047474 178 QILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEA 257 (326)
Q Consensus 178 ~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~ 257 (326)
+++||+|||||++++++|+||+|.||++|++|+|++++++|+.++|+++++++||||++|++|||||+|+|+|||+|+|+
T Consensus 160 ll~YPvLQAADIl~l~adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~Dspe 239 (682)
T PTZ00348 160 QVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEE 239 (682)
T ss_pred HHhhhHHHhhcccccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccCCHH
Confidence 99999999999999999999999999999999999999999766788888999999976768999999889999999999
Q ss_pred HHHHHHHhccCCCC-----------CC----CCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 258 EVNVKIKKAYCPPK-----------IV----EGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 258 ~i~~KI~kA~c~~~-----------~~----~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
+|++||++|||||. +| ++||+++|+++++||+.+.+.+. |+++|.+++||+++|.+.-
T Consensus 240 ~I~kKI~kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i------~~~~~~~~eele~~y~~g~ 312 (682)
T PTZ00348 240 DVARKIRQAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATI------DGTTYATYEDLEQAFVSDE 312 (682)
T ss_pred HHHHHHHhCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhccc------CCcccCcHHHHHHHHhcCC
Confidence 99999999999964 34 77999999999999988764432 2469999999999997653
No 5
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4e-61 Score=464.94 Aligned_cols=248 Identities=27% Similarity=0.384 Sum_probs=218.6
Q ss_pred HHHHHhhcccccCHHHHHHHHhc--CCCC-eEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCC
Q 047474 24 FRLVRSIGEECIQEDELLNLLTK--KPQP-ICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMG 100 (326)
Q Consensus 24 ~~li~r~~~e~~~~~eL~~lL~~--~~~~-~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~ 100 (326)
-.+++|++ ++.+++++.+++. +++| .+|+|++|||.+||||+++ +.++++||++|++++|+||||||++++ .
T Consensus 40 h~~~rR~~--~~~hrd~d~il~~~~~~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~--~ 114 (368)
T PRK12285 40 HPLMRRGI--IFGHRDYDKILEAYRNGKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAAR--G 114 (368)
T ss_pred chHHhcCe--eeecCCHHHHHHHHhcCCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcC--C
Confidence 55888998 8889988888764 3344 6999999999999999764 447999999999999999999999986 4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhh
Q 047474 101 GDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL 180 (326)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~ 180 (326)
.+++++++++++++++|+|+|+||+|+.|++||+|. + ||.+++.+++.+|++++++..+++ +..++|+++
T Consensus 115 ~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~-~----~~~l~~~l~~~~t~~~l~r~~~f~-----~~~~~g~~~ 184 (368)
T PRK12285 115 LSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI-K----VYDLAFELAKKVNFSELKAIYGFT-----GETNIGHIF 184 (368)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH-H----HHHHHHHHHhhCcHHHHHHhhCCC-----CCCchhhhh
Confidence 799999999999999999999999999999999953 3 677888888899999999976553 346999999
Q ss_pred hhhhhhhhhcc------ccCcEEEeccchhHHHHHHHHHHHHhcCc---CCcceeecCcccCCCCCCccccCCCCCCcee
Q 047474 181 YPCMQCADIFF------LKADICQLGMDQRKVNVLAREYCDDIKRK---NKPIILSHHMLPGLQQGQEKMSKSDPSSAIY 251 (326)
Q Consensus 181 YP~lQaaD~~~------l~~d~~~~G~DQ~~~~~lar~~~~k~~~~---~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~ 251 (326)
||+|||||+++ +.+++||+|.||++|++++|++|+|+|.. ++|..+++++|||| +| +|||||+|+|+||
T Consensus 185 YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL-~G-~KMSkS~~~s~I~ 262 (368)
T PRK12285 185 YPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGL-TG-GKMSSSKPESAIY 262 (368)
T ss_pred hhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhHhhhcccCC-CC-CcCCCCCCCCeee
Confidence 99999999999 56679999999999999999999999432 37999999999999 66 6999999999999
Q ss_pred cCCCHHHHHHHHHhccCCC-----------CCCCCCcHHHHHHHhccC
Q 047474 252 MEDEEAEVNVKIKKAYCPP-----------KIVEGNPCLEYIKYIIFP 288 (326)
Q Consensus 252 L~D~~~~i~~KI~kA~c~~-----------~~~~~n~vl~~~~~~ifp 288 (326)
|+|+|++|++||++||||+ ++|+.|++++|+++++.+
T Consensus 263 L~D~p~~I~kKI~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~ 310 (368)
T PRK12285 263 LTDDPETVKKKIMKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEE 310 (368)
T ss_pred ccCCHHHHHHHHHhCcCCCCcccccccccCCCCCcchHHHHHHHHhcC
Confidence 9999999999999999994 568899999999998643
No 6
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=2.1e-60 Score=455.28 Aligned_cols=245 Identities=24% Similarity=0.298 Sum_probs=214.6
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
++++|+|++|||.+||||++..+.++.++|++|+ ++|+||||||+++++ .+++++++++++++++|+|+|+||+|+.
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~-~~i~IaD~ha~~~~~--~~~~~i~~~~~~~~~~~lA~G~dp~k~~ 78 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHE-QFVLIADQQALTDNA--KNPEKIRRNILEVALDYLAVGIDPAKST 78 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCC-EEEEEccchhHhCCC--CCHHHHHHHHHHHHHHHHHhCcChhHeE
Confidence 4689999999999999998876778889999985 999999999999863 6999999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcc---c-ccCccchhhhhhhhhhhhhhccccCcEEEeccchh
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGR---S-EQDELTAAQILYPCMQCADIFFLKADICQLGMDQR 204 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r---~-~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~ 204 (326)
||+||+ ++++.++.|.+.+ .++++++.|+.+++.. . ..+.+++|+++||+|||||++++++|+||||.||+
T Consensus 79 i~~qS~-~~e~~~l~~~l~~----~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~ 153 (333)
T PRK12282 79 IFIQSQ-IPELAELTMYYMN----LVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQL 153 (333)
T ss_pred EEECCc-chHHHHHHHHHHh----hchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccH
Confidence 999999 5688888888776 5799999998888642 1 13457999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCC-ccee-------ecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCC-------
Q 047474 205 KVNVLAREYCDDIKRKNK-PIIL-------SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP------- 269 (326)
Q Consensus 205 ~~~~lar~~~~k~~~~~~-p~~l-------~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~------- 269 (326)
+|++|+|++|+|+|+.++ |+++ .+|+|||| +|++|||||+ +|+|||+|+|++|++||++|+||
T Consensus 154 ~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L-~g~~KMSKS~-~~~I~L~D~pe~I~kKI~~A~td~~~~~~~ 231 (333)
T PRK12282 154 PMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGL-DGKAKMSKSL-GNAIYLSDDADTIKKKVMSMYTDPNHIRVE 231 (333)
T ss_pred HHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCC-CCCCcCCCCC-CCeeeeeCCHHHHHHHHHhCcCCCCCccCC
Confidence 999999999999996443 5533 46899999 7768999998 47999999999999999999997
Q ss_pred -CCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 270 -PKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 270 -~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
|++|+.||+++|+++| . ..+.++|+|+++|.+..
T Consensus 232 ~~~~~~~~~l~~~~~~f--~----------------~~~~~~e~l~~~y~~g~ 266 (333)
T PRK12282 232 DPGKVEGNVVFTYLDAF--D----------------PDKAEVAELKAHYQRGG 266 (333)
T ss_pred CCCCCCcChHHHHHHHh--C----------------CCCchHHHHHHHHhcCC
Confidence 7899999999999995 1 14778899999987654
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-60 Score=454.46 Aligned_cols=228 Identities=25% Similarity=0.337 Sum_probs=203.1
Q ss_pred CeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 047474 50 PICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEF 129 (326)
Q Consensus 50 ~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~ 129 (326)
+++|+|++|||.+||||++..+.++++||++ ++++++||||||++++ .+++++++++++++++|+|||+||+|+.|
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 77 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVP---QDPEELRENTRELAADYLACGIDPEKSTI 77 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCC---CCHHHHHHHHHHHHHHHHeEccChhheEE
Confidence 6799999999999999977555589999996 9999999999999986 38999999999999999999999999999
Q ss_pred EeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc--cCccchhhhhhhhhhhhhhccccCcEEEeccchhHHH
Q 047474 130 LWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE--QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVN 207 (326)
Q Consensus 130 ~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~--~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~ 207 (326)
|+||+ ++++.+++|.+.+ .++++++.|+.+++.+.. .+.+++|+++||+|||||++++++|+||+|.||++|+
T Consensus 78 f~qS~-~~~~~el~~~l~~----~~~~~~l~r~~~~k~~~~~~~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~ 152 (333)
T PRK00927 78 FVQSH-VPEHAELAWILNC----ITPLGELERMTQFKDKSAKQKENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHL 152 (333)
T ss_pred EEeCC-CchhHHHHHHHHh----hhhHHHHHhhhhHHHHHhccCCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHH
Confidence 99999 5689999999776 689999999999987642 3567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcC-----Ccceee---cCcccCCCCCCccccCCCCC--CceecCCCHHHHHHHHHhccCCCC------
Q 047474 208 VLAREYCDDIKRKN-----KPIILS---HHMLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKAYCPPK------ 271 (326)
Q Consensus 208 ~lar~~~~k~~~~~-----~p~~l~---~~~lp~L~~g~~KMSKS~~~--s~I~L~D~~~~i~~KI~kA~c~~~------ 271 (326)
+++||+|+++|+.+ .|..+. .|+||||+++++|||||.++ |+|||+|+|++|++||++|+||++
T Consensus 153 elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~~~~~~ 232 (333)
T PRK00927 153 ELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERLREIR 232 (333)
T ss_pred HHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCcccccc
Confidence 99999999999643 454443 38999995554699999976 999999999999999999999974
Q ss_pred -----CCCCCcHHHHHHHhc
Q 047474 272 -----IVEGNPCLEYIKYII 286 (326)
Q Consensus 272 -----~~~~n~vl~~~~~~i 286 (326)
+|+.|++++|++++.
T Consensus 233 ~~~~~~p~~~~l~~~~~~~~ 252 (333)
T PRK00927 233 YDLPNKPEVSNLLTIYSALS 252 (333)
T ss_pred cCCCCCCccccHHHHHHHhC
Confidence 488999999999964
No 8
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=2.7e-61 Score=455.32 Aligned_cols=264 Identities=36% Similarity=0.554 Sum_probs=236.7
Q ss_pred CCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHH--HHHcCCCCC
Q 047474 48 PQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEI--WIAVGMRTE 125 (326)
Q Consensus 48 ~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~--~~A~G~d~~ 125 (326)
+++++|+||+|||.|||||.++. .++++||++|++++|+||||||+++++++.+++.++.++.++++. ++|+|+||+
T Consensus 4 ~~~~~y~G~~PTg~lHlG~l~~~-~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~ 82 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLGHLVPI-MKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPE 82 (292)
T ss_dssp SSEEEEEEEESSSS-BHHHHHHH-HHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTT
T ss_pred CCcEEEEeECCCCcccchHHHHH-HHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 45679999999999999986544 579999999999999999999999998767899999999999999 999999999
Q ss_pred ceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccccc-CccchhhhhhhhhhhhhhccccCcEEEeccchh
Q 047474 126 RVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQ-DELTAAQILYPCMQCADIFFLKADICQLGMDQR 204 (326)
Q Consensus 126 k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~-~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~ 204 (326)
++.|++||+|. .+. .||.++.++++.++++++.++.+++.|... +++++|+|+||+|||||++++++|+||||.||+
T Consensus 83 k~~i~~~s~~~-~~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~ 160 (292)
T PF00579_consen 83 KTEIFRQSDWP-EHM-ELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQR 160 (292)
T ss_dssp TEEEEEGHHHH-CHH-HHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGH
T ss_pred ceEEEeCCCcc-ccc-chhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHH
Confidence 99999999976 554 688888899999999999999988888654 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCc---CCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHH
Q 047474 205 KVNVLAREYCDDIKRK---NKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEY 281 (326)
Q Consensus 205 ~~~~lar~~~~k~~~~---~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~ 281 (326)
+|+++||++++|+|.+ ++|.++++|+||+| +|.+|||||+++++|||+|++++|++||++|+|++++ .++.+..
T Consensus 161 ~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l-~G~~KMSKS~~ns~I~L~d~~~~i~~Ki~~a~~~~~~--~~~~~~~ 237 (292)
T PF00579_consen 161 GHIELARDLARKFNYKEIFPKPAGLTSPLLPGL-DGQKKMSKSDPNSAIFLDDSPEEIRKKIKKAFCDPDR--ENPRLLK 237 (292)
T ss_dssp HHHHHHHHHHHHHTHHSTSSS-EEEEETCBBST-TSSSBTTTTTTGGS-BTTTTHHHHHHHHHHSHTSTTS--HHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccCchheeecccccc-CCccccCccCCccEEEEeccchhHHHHHHHHhhCCCc--ccccccc
Confidence 9999999999999975 47999999999999 7766999999877999999999999999999999987 7889999
Q ss_pred HHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 282 IKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 282 ~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
.+++++| +.+++.+.++++..|.++++++++|....
T Consensus 238 ~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (292)
T PF00579_consen 238 GRPFISP----FLIERLEAFHGNDDYRSLEELLADYVSGE 273 (292)
T ss_dssp HHHTHHH----HHHHHHHHHHHHHHESHHHHHHHHHHTTS
T ss_pred cCCCCCH----HHHHHHHHhcCCcchHHHHHHHHHHccCC
Confidence 9998877 56777888888888999999999998763
No 9
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=7.7e-60 Score=440.51 Aligned_cols=240 Identities=25% Similarity=0.372 Sum_probs=217.4
Q ss_pred CeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCC-------CCHHHHHHHHHHHHHHHHHcC
Q 047474 50 PICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMG-------GDLKKIQTVGRYLIEIWIAVG 121 (326)
Q Consensus 50 ~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~-------~~~~~i~~~~~~~~~~~~A~G 121 (326)
+.+|+||+||| ++||||++.. .+++++|++|++++++|||+||+++||+| .+++++++++++++++++|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 36999999999 9999998754 58999999999999999999999999864 688999999999999999999
Q ss_pred CC--CCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc-cCccchhhhhhhhhhhhhhccccCcEEE
Q 047474 122 MR--TERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE-QDELTAAQILYPCMQCADIFFLKADICQ 198 (326)
Q Consensus 122 ~d--~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~-~~~~~~~~~~YP~lQaaD~~~l~~d~~~ 198 (326)
++ |+|++|++||+|+ ++ +||..++++++++++++|+|+.+++.|.+ ++++++|+|+||+|||||++++++|+||
T Consensus 80 ~~~~p~k~~i~~~s~~~-~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi~~l~~~l~~ 156 (269)
T cd00805 80 DFIPPEKAKFVNNSDWL-LS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQL 156 (269)
T ss_pred ccCCCcceEEEEchHhh-cc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhCCeeE
Confidence 96 9999999999976 55 79999999999999999999999999874 4578999999999999999999999999
Q ss_pred eccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCc-eecCCCHHHHHHHHHhccCCCCCCCCCc
Q 047474 199 LGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSA-IYMEDEEAEVNVKIKKAYCPPKIVEGNP 277 (326)
Q Consensus 199 ~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~-I~L~D~~~~i~~KI~kA~c~~~~~~~n~ 277 (326)
||.|||+|+++|||+|+|+++. +|+.+++|+||++ +| +|||||.+++. |++.|+|++|++||++|+|+ +
T Consensus 157 ~G~DQ~~~i~~~rd~a~r~~~~-~~~~l~~~ll~~l-~G-~KMSKS~~~~~~i~l~dsp~~i~~Ki~~a~~~-------~ 226 (269)
T cd00805 157 GGSDQRGNITLGRDLIRKLGYK-KVVGLTTPLLTGL-DG-GKMSKSEGNAIWDPVLDSPYDVYQKIRNAFDP-------D 226 (269)
T ss_pred ecHHHHHHHHHHHHHHHHhCCC-CcEEEeeccccCC-CC-CcccCCCCCcccccCCCCHHHHHHHHHcCCcH-------H
Confidence 9999999999999999999975 6899999999999 77 59999997555 69999999999999999999 7
Q ss_pred HHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 278 CLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 278 vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
|.+|+++++|+. +.++|||+++|.+.
T Consensus 227 v~~~l~~~~~~~-----------------~~~~eel~~~~~~~ 252 (269)
T cd00805 227 VLEFLKLFTFLD-----------------YEEIEELEEEHAEG 252 (269)
T ss_pred HHHHHHHHHcCC-----------------HHHHHHHHHHHhcC
Confidence 899999998875 45577777777654
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=7.8e-59 Score=435.79 Aligned_cols=233 Identities=25% Similarity=0.344 Sum_probs=208.2
Q ss_pred eEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 047474 51 ICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFL 130 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~ 130 (326)
++|+|++|||++||||++....++.++|++|++++++|||+||+++++ .+++++++++++++++++|+|+||+|+.|+
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~--~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQ--LDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCC--CCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 489999999999999987645579999999999999999999999864 589999999999999999999999999999
Q ss_pred eCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc-cCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHH
Q 047474 131 WSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE-QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVL 209 (326)
Q Consensus 131 ~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~-~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~l 209 (326)
.||+ +.++.+++|. +++.+++++++|+.++++|.. ++.+++|+|+||+|||||++++++|++|+|.||++|+++
T Consensus 79 ~qS~-~~~~~~l~~~----l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l 153 (280)
T cd00806 79 FQSD-VPEHYELAWL----LSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLEL 153 (280)
T ss_pred EcCC-cHHHHHHHHH----HhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHH
Confidence 9999 4466666665 455899999999999988653 346799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCc-----CCcceeec--CcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCCC---------CC
Q 047474 210 AREYCDDIKRK-----NKPIILSH--HMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPK---------IV 273 (326)
Q Consensus 210 ar~~~~k~~~~-----~~p~~l~~--~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~---------~~ 273 (326)
+||+|+|+|.. ++|..+++ ++||||++|++|||||+++|+|||+|+|++|++||++|+|+++ +|
T Consensus 154 ~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~a~td~~~~~~~~~~~~~ 233 (280)
T cd00806 154 TRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGRTEHRRDGGGP 233 (280)
T ss_pred HHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHhccCCCCCceecCCCCCC
Confidence 99999999953 36888888 9999997666799999988999999999999999999999974 69
Q ss_pred CCCcHHHHHHHhccCCC
Q 047474 274 EGNPCLEYIKYIIFPWD 290 (326)
Q Consensus 274 ~~n~vl~~~~~~ifp~~ 290 (326)
++|++++|++++..+..
T Consensus 234 ~~~~l~~~~~~~~~~~~ 250 (280)
T cd00806 234 GVSNLVEIYSAFFNDDD 250 (280)
T ss_pred CcChHHHHHHHHhCCCH
Confidence 99999999999765544
No 11
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-59 Score=449.90 Aligned_cols=294 Identities=20% Similarity=0.278 Sum_probs=254.8
Q ss_pred CCHHHHHHHHHhh-cccccCHHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeee
Q 047474 18 MSVEEKFRLVRSI-GEECIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95 (326)
Q Consensus 18 ~~~~~~~~li~r~-~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~ 95 (326)
|++ ++.+|++|| ++++.++++|+++++.+ +.++|+|||||| ++||||.++. .++++||++||++++||||+||++
T Consensus 2 ~~~-~~~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~I 78 (401)
T COG0162 2 MDV-ELLELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMI 78 (401)
T ss_pred CcH-HHHHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceec
Confidence 466 899999999 77899999999999865 567999999999 9999998755 489999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHH-----HHHHHHHHcCCCCC-ceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccc
Q 047474 96 NNKMGGDLKKIQTVGR-----YLIEIWIAVGMRTE-RVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRS 169 (326)
Q Consensus 96 ~~~~~~~~~~i~~~~~-----~~~~~~~A~G~d~~-k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~ 169 (326)
|||+ ++.++++..++ +......++|.+++ +++|++||+|+... .||.++.++++++|+++|+++.++++|.
T Consensus 79 gDps-Gk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~--~y~~~l~~~g~~~sv~rml~~d~~~~R~ 155 (401)
T COG0162 79 GDPS-GKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKL--NYLDFLRDVGKHFSVNRMLRRDDVKKRL 155 (401)
T ss_pred CCCC-CCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcC--CHHHHHHHHHhHccHHHHHHhhhHHHHh
Confidence 9998 56666666663 33345567787777 99999999997444 5999999999999999999999999998
Q ss_pred cc-CccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC--
Q 047474 170 EQ-DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP-- 246 (326)
Q Consensus 170 ~~-~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~-- 246 (326)
+. .++++++|+||+|||+|++++++|+++||+|||+|+++|||+++|++. .+++++++|+|+++ +|. |||||..
T Consensus 156 ~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~DQ~~ni~~grdl~rr~g~-~~~~~lt~PLL~~l-dG~-KmgKs~~~a 232 (401)
T COG0162 156 EREQGISFTEFNYPLLQAYDFVYLNKDLQLGGSDQWGNILAGRDLIRRLGQ-KKVVGLTTPLLTGL-DGK-KMGKSEGGA 232 (401)
T ss_pred ccCCCCchhhhhhHHHHHHHHHHHccchhcCChHHHHHHHHHHHHHHHhCC-CCeEEEEeccccCC-CCC-cccccCCCc
Confidence 65 479999999999999999999999999999999999999999999997 47899999999999 885 9999873
Q ss_pred -------CCceecCCCHHHHHHHHHhccCCCC-CCCCCcHHHHHHHhccCCCCce------eEeecccCCCCceecCHHH
Q 047474 247 -------SSAIYMEDEEAEVNVKIKKAYCPPK-IVEGNPCLEYIKYIIFPWDKKF------VVERSEANGGNKTFETMKN 312 (326)
Q Consensus 247 -------~s~I~L~D~~~~i~~KI~kA~c~~~-~~~~n~vl~~~~~~ifp~~~~~------~i~r~~~~gg~~~y~~~ee 312 (326)
.|.+.+.|.+..|..|++++||+.. ...-|++.++.+++++|..... .+.++..+|+...+..+++
T Consensus 233 ~~~~s~~~Sp~~~yq~~~~i~D~~~~~~~~~~t~l~~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a~~a~~~ 312 (401)
T COG0162 233 VWLDSEKTSPYDFYQYWMNIEDADVKRFLKLLTFLSLEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAAEAAEEE 312 (401)
T ss_pred eEccCCCCCcHhhhhcHhcCcHHHHHHHHHHhCcCChHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHHHHHHHH
Confidence 1345555667888999999999997 6655999999999999974322 2447889999999999999
Q ss_pred HHHHHHhh
Q 047474 313 LLLIMKKE 320 (326)
Q Consensus 313 l~~~~~~~ 320 (326)
++..|...
T Consensus 313 ~~~~F~~g 320 (401)
T COG0162 313 FEKLFSEG 320 (401)
T ss_pred HHHHHhcC
Confidence 99999874
No 12
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=5.1e-58 Score=438.53 Aligned_cols=248 Identities=25% Similarity=0.360 Sum_probs=208.4
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
++++|+|++|||.+||||++... +.+.+|++|++++|+||||||+++++. .+++.++.++++++++|+|||+||+|++
T Consensus 2 ~~~v~~G~~PTG~~HlG~~l~~~-~~~~~~q~~~~~~i~IaD~ha~t~~~~-~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 79 (328)
T TIGR00233 2 KFRVLTGIQPSGKMHLGHYLGAI-QTKWLQQFGVELFICIADLHAITVKDN-TDPDALRKAREELAADILAVGLDPKKTF 79 (328)
T ss_pred CCEEEEeeCCCcHhHHHHHHHHH-HHHHHHhCCCCEEEEeecchhhcCCCC-CCHHHHHHHHHHHHHHHHHhCcChhheE
Confidence 45799999999999999976554 566777899999999999999998764 5788999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHH
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNV 208 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~ 208 (326)
||+||+ +++ ||.++..++++++++++.|+.++++|...+.+++|+|+||+||||||+++++|+||+|.||++|++
T Consensus 80 if~qS~-~~e----~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~e 154 (328)
T TIGR00233 80 IFLQSD-YPE----HYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLE 154 (328)
T ss_pred EEEcCC-cHH----HHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHH
Confidence 999999 534 566666677799999999999999986455689999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc-----CCcceeec---CcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCCC---------
Q 047474 209 LAREYCDDIKRK-----NKPIILSH---HMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPK--------- 271 (326)
Q Consensus 209 lar~~~~k~~~~-----~~p~~l~~---~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~--------- 271 (326)
|+|++|+|+|+. ..|..+++ |.|+|| +| +|||||+++|+|+|+|+|++|++||++|+||++
T Consensus 155 laRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~s~I~L~D~~e~I~~KI~~a~td~~~~~~~~~~~ 232 (328)
T TIGR00233 155 LTRDLAERFNKKFKNFFPKPESLISKFFPRLMGL-SG-KKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGRVTLFEHRE 232 (328)
T ss_pred HHHHHHHHhhhhcCcccCCChhhhccccCCCCCC-CC-CcCCCCCCCCeEeecCCHHHHHHHHHhcCCCCCCCcccCcCC
Confidence 999999999953 35777765 457777 45 699999988899999999999999999999985
Q ss_pred CCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 272 IVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 272 ~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
.++...++.+++++.++..+ + .++++++++|.++
T Consensus 233 ~~g~~~l~~i~~~~~~~~~~------------~---~~~~~~~~~~~~g 266 (328)
T TIGR00233 233 KGGVPNLLVIYQYLSFFLID------------D---DKLKEIYEKYKSG 266 (328)
T ss_pred CCCCchHHHHHHHhhccCCC------------c---chHHHHHHHHhcC
Confidence 35555578888886544221 1 1567777777654
No 13
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=4.5e-58 Score=446.10 Aligned_cols=286 Identities=23% Similarity=0.264 Sum_probs=246.0
Q ss_pred HHH-HHHhhcccccC-HHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCC
Q 047474 23 KFR-LVRSIGEECIQ-EDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKM 99 (326)
Q Consensus 23 ~~~-li~r~~~e~~~-~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~ 99 (326)
+++ +.+|++.++++ +++|++++++ ++++|+||+||| ++||||+++ +.++++||++||+++++||||||+++||+
T Consensus 4 ~l~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdps 80 (377)
T TIGR00234 4 ILLLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPS 80 (377)
T ss_pred HHHHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCC
Confidence 444 45577888877 5678888864 678999999999 999999775 45799999999999999999999999997
Q ss_pred CCC-------HHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccC
Q 047474 100 GGD-------LKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQD 172 (326)
Q Consensus 100 ~~~-------~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~ 172 (326)
+++ .+++++|+ +.++.++|+|+||++++|++||+|+.. ..||.++.++++++|+++|+++.++++|.+.
T Consensus 81 g~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~--~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~- 156 (377)
T TIGR00234 81 GKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLK--LNYIDFIRDLGKIFSVNRMLRRDAFSSRLER- 156 (377)
T ss_pred ChHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCc--CCHHHHHHHHhCceEHHHHHcccHHHHHHhc-
Confidence 653 34566666 557778999999999999999999743 3599999999999999999999999999754
Q ss_pred ccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC------
Q 047474 173 ELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP------ 246 (326)
Q Consensus 173 ~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~------ 246 (326)
++++++|+||+|||||++++++|+|+||.|||+|++.+|+++++++.. .++.++.|+++++ +| .|||||.+
T Consensus 157 ~is~~ef~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~-~~~~~t~pLl~~~-dg-~KmgKS~~~~i~l~ 233 (377)
T TIGR00234 157 GISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPS-LGFGLTVPLLTPA-DG-EKMGKSGGGAVSLD 233 (377)
T ss_pred CCCchhhhhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCC-CceeeceeeecCC-CC-CCccCCCCCcccCC
Confidence 589999999999999999999999999999999999999999999864 5788899999999 77 69999952
Q ss_pred ----CCceecCCCHHHHHHHHHhccCCCCC----------------CCCCcHHHHHHHhccCCCCc--------------
Q 047474 247 ----SSAIYMEDEEAEVNVKIKKAYCPPKI----------------VEGNPCLEYIKYIIFPWDKK-------------- 292 (326)
Q Consensus 247 ----~s~I~L~D~~~~i~~KI~kA~c~~~~----------------~~~n~vl~~~~~~ifp~~~~-------------- 292 (326)
+++||+.|+|+++.+||++|||++.. +..|++.++.+++.+|+...
T Consensus 234 ~~~~~~~i~~~d~~D~~~~Ki~k~~t~~~~~ei~~l~~~~~~~~~~~q~~la~ei~~~vhg~~~~~~a~~~~~~~f~~~~ 313 (377)
T TIGR00234 234 EGKYDFYQFWINTPDEDVKKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEEAALAAEEISEAIFSGGL 313 (377)
T ss_pred ccHhhhhhhhcCCcHHHHHHHHHHcCCCcHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCC
Confidence 25566666699999999999999877 88899999999999886532
Q ss_pred ----eeEeecccCCCCceecCHHHHHHHHH
Q 047474 293 ----FVVERSEANGGNKTFETMKNLLLIMK 318 (326)
Q Consensus 293 ----~~i~r~~~~gg~~~y~~~eel~~~~~ 318 (326)
+.+.+.+++||++.|.+++++..+|.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (377)
T TIGR00234 314 NPDELPIFRPEKFGGDITLADLLVLSGLFP 343 (377)
T ss_pred CccCCCEEeecccCCCcCHHHHHHHcCCCc
Confidence 77888888888899999998887774
No 14
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-57 Score=441.34 Aligned_cols=225 Identities=24% Similarity=0.341 Sum_probs=193.2
Q ss_pred eEEEcccCCCCccchhhhhHHHHHHHHHH-CCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 047474 51 ICYDGFEPSGRMHIAQGVMKAISVNKLTS-AGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEF 129 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~ 129 (326)
++|+|++|||.+||||++...-+|.++|+ .|++++++||||||+++. .+++++++++.++++.|+|||+||+|++|
T Consensus 4 rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~---~dp~~lr~~~~e~aa~~LA~GlDPek~~i 80 (431)
T PRK12284 4 RVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKC---DDPARIQRSTLEIAATWLAAGLDPERVTF 80 (431)
T ss_pred EEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCC---CCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 59999999999999996543324677764 799999999999999953 69999999999999999999999999999
Q ss_pred EeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccc---------ccCccchhhhhhhhhhhhhhccccCcEEEec
Q 047474 130 LWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRS---------EQDELTAAQILYPCMQCADIFFLKADICQLG 200 (326)
Q Consensus 130 ~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~---------~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G 200 (326)
|+||+ +++|.+++|.+.| + ++++++.|+.++|... ..+.+++|+|+||+||||||+++++|+||||
T Consensus 81 f~QSd-vpeh~EL~wiL~~-i---t~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG 155 (431)
T PRK12284 81 YRQSD-IPEIPELTWLLTC-V---AGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVG 155 (431)
T ss_pred EECCc-chhHHHHHHHHHh-h---hhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEc
Confidence 99999 8899999999998 4 4555555655566321 1245799999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCcCC------cce-e--ecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCC--
Q 047474 201 MDQRKVNVLAREYCDDIKRKNK------PII-L--SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP-- 269 (326)
Q Consensus 201 ~DQ~~~~~lar~~~~k~~~~~~------p~~-l--~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~-- 269 (326)
.||++|++|+||+|+|||+.++ |.. + ++++|||| +| +|||||. +|+|+|+|+|++|++||++|+||
T Consensus 156 ~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~-~n~I~L~Ds~~~I~kKI~~A~TDs~ 232 (431)
T PRK12284 156 RDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGL-DG-RKMSKSY-DNTIPLFAPREELKKAIFSIVTDSR 232 (431)
T ss_pred chhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCC-CC-ccccCCC-CCEeeecCCHHHHHHHHhcCCCCCC
Confidence 9999999999999999997652 322 2 35899999 67 6999998 59999999999999999999974
Q ss_pred ----CCCCCCCcHHHHHHHhc
Q 047474 270 ----PKIVEGNPCLEYIKYII 286 (326)
Q Consensus 270 ----~~~~~~n~vl~~~~~~i 286 (326)
|++|++||+++|++++.
T Consensus 233 ~~~~~~~pe~snLl~i~~~~~ 253 (431)
T PRK12284 233 APGEPKDTEGSALFQLYQAFA 253 (431)
T ss_pred CCCCCCCCCcchHHHHHHHhC
Confidence 57899999999999963
No 15
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-57 Score=432.12 Aligned_cols=227 Identities=22% Similarity=0.298 Sum_probs=199.0
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHH-CCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTS-AGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
++++|+|++|||.+||||++.....|.++|+ +|++++|+||||||++ .+ +++++++++++++++.|+|||+||+|+
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt-~~--~~~~~l~~~~~~~~~~~lA~GlDP~k~ 79 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALN-AV--HDPEQFRSYTREVAATWLSLGLDPEDV 79 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhcc-CC--CCHHHHHHHHHHHHHHHhheeecccce
Confidence 4689999999999999997654334777865 7889999999999986 33 699999999999999999999999999
Q ss_pred EEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc---------cCccchhhhhhhhhhhhhhccccCcEEE
Q 047474 128 EFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE---------QDELTAAQILYPCMQCADIFFLKADICQ 198 (326)
Q Consensus 128 ~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~---------~~~~~~~~~~YP~lQaaD~~~l~~d~~~ 198 (326)
.||+||+ +++|.+++|.+.+ .++++++.|+.++|.+.. .+.+++|+++||+||||||+++++|+||
T Consensus 80 ~if~qS~-v~~~~eL~~il~~----~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~Vp 154 (332)
T PRK12556 80 IFYRQSD-VPEIFELAWILSC----LTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVP 154 (332)
T ss_pred EEEECCC-chHHHHHHHHHHc----cchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEE
Confidence 9999999 8899999997766 689999999988876532 1346899999999999999999999999
Q ss_pred eccchhHHHHHHHHHHHHhcCc-----CCccee---ecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCC
Q 047474 199 LGMDQRKVNVLAREYCDDIKRK-----NKPIIL---SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPP 270 (326)
Q Consensus 199 ~G~DQ~~~~~lar~~~~k~~~~-----~~p~~l---~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~ 270 (326)
||.||++|++|+|++|+|||+. +.|..+ ++++|||| +| +|||||.+ |+|+|+|+|++|++||++|+|++
T Consensus 155 vG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~-n~I~L~D~p~~I~kKI~ka~Td~ 231 (332)
T PRK12556 155 VGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGL-DG-RKMSKSYG-NVIPLFAEQEKLRKLIFKIKTDS 231 (332)
T ss_pred eccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCC-CC-CCCCCCCC-CcccccCCHHHHHHHHHHhccCC
Confidence 9999999999999999999953 246555 57999999 77 69999984 88999999999999999999663
Q ss_pred ------CCCCCCcHHHHHHHhc
Q 047474 271 ------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 271 ------~~~~~n~vl~~~~~~i 286 (326)
++|+.|++++|+++|.
T Consensus 232 ~~~~~~~~p~~~~l~~i~~~~~ 253 (332)
T PRK12556 232 SLPNEPKDPETSALFTIYKEFA 253 (332)
T ss_pred CcccCCCCcchhHHHHHHHHHC
Confidence 6899999999999975
No 16
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.2e-56 Score=438.38 Aligned_cols=254 Identities=20% Similarity=0.297 Sum_probs=223.0
Q ss_pred CHHHHHHHHH-hhcccccC-HHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeee
Q 047474 19 SVEEKFRLVR-SIGEECIQ-EDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95 (326)
Q Consensus 19 ~~~~~~~li~-r~~~e~~~-~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~ 95 (326)
+..+.++.++ |++.++++ +++|+++|+ ++++++|+||+||| ++||||+++ ..++++||++|++++++||||||++
T Consensus 2 ~~~~~l~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~i 79 (408)
T PRK05912 2 SMSNLLEELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMI 79 (408)
T ss_pred cHHHHHHHHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEc
Confidence 4466899888 99998888 889999997 44667999999999 799999875 4579999999999999999999999
Q ss_pred cCCCCC-------CHHHHHHHHHHHHHHHHHcCCCCCc--eEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhh
Q 047474 96 NNKMGG-------DLKKIQTVGRYLIEIWIAVGMRTER--VEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIM 166 (326)
Q Consensus 96 ~~~~~~-------~~~~i~~~~~~~~~~~~A~G~d~~k--~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~ 166 (326)
+||+|+ +.+.+++++.++.+. +++|+||++ +.|++||+|+ ++. .|+.++.++++++++++|+++.+++
T Consensus 80 gDpsgk~~~r~~l~~e~i~~n~~~i~~q-l~~~ld~~k~~~~i~~nsd~~-~~~-~~~~~l~~v~~~~~v~~m~~~~~~k 156 (408)
T PRK05912 80 GDPSGKSETRKLLTREQVAENAETIKEQ-LFKFLDFEKDGAEIVNNSDWL-GKL-NAIDFLRDLGKHFTVNRMLERDDFK 156 (408)
T ss_pred CCCCCCchhhccCCHHHHHHHHHHHHHH-HHHhcCcCcCcEEEEECCCcC-Ccc-cHHHHHHHHhhhccHHHHhhcchHH
Confidence 999864 456788888776554 499999999 9999999987 443 3666777799999999999999999
Q ss_pred cccc-cCccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccc
Q 047474 167 GRSE-QDELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKM 241 (326)
Q Consensus 167 ~r~~-~~~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KM 241 (326)
.|.. ++++++|+|+||+|||||++++ +|++|+||.|||+|+++|||+++|+|.. +++.++.|+||++ +| +||
T Consensus 157 ~r~~~~~~is~~ef~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~-~~~~l~~plL~~~-~G-~KM 233 (408)
T PRK05912 157 KRLREGQGISFTEFLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGK-PQFGLTMPLLTGL-DG-KKM 233 (408)
T ss_pred HHhccCCCCchhhhhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCC-CeEEEecCCcCCC-CC-Ccc
Confidence 9864 3578999999999999999999 9999999999999999999999999964 5788999999999 78 799
Q ss_pred cCCCCCCceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccC
Q 047474 242 SKSDPSSAIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP 288 (326)
Q Consensus 242 SKS~~~s~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp 288 (326)
|||. +|+|||+| +|+++++||+++ .++++..|++++.+.
T Consensus 234 sKS~-~naI~L~d~~tsp~~i~qki~~~-------~D~~v~~~l~~~t~~ 275 (408)
T PRK05912 234 GKSE-GNAVWLDEEKTSPYEMYQKWMNI-------SDADVWRYLKLLTFL 275 (408)
T ss_pred cCCC-CCceeCCCCCCCHHHHHHHHhcC-------ChHHHHHHHHHHhcC
Confidence 9998 79999999 999999999985 567899999997653
No 17
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-57 Score=423.14 Aligned_cols=232 Identities=25% Similarity=0.346 Sum_probs=204.4
Q ss_pred CCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 047474 48 PQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 48 ~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
.++++++|++|||.|||||++..+..+.++|+.+++++++|||+||++.+. ....+.++++++.+++.|+|+|+||+|+
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~-~~~~~~l~~~~~e~~a~~LA~GiDP~k~ 82 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQ-DPTEEDLRQATREVAADYLAVGLDPEKS 82 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCC-CChHHHHHHHHHHHHHHHHHhccCcccc
Confidence 467899999999999999976655456666665579999999999999863 1223889999999999999999999999
Q ss_pred EEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc--cCccchhhhhhhhhhhhhhccccCcEEEeccchhH
Q 047474 128 EFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE--QDELTAAQILYPCMQCADIFFLKADICQLGMDQRK 205 (326)
Q Consensus 128 ~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~--~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~ 205 (326)
.||.||+ +++|.++.|.+.| .+++++++|+.+|++... .+.+++|.+.||++|||||+++++++||||.||.|
T Consensus 83 ~if~QS~-v~e~~eLa~~l~~----~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~q 157 (314)
T COG0180 83 TIFLQSE-VPEHAELAWLLSC----VTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQ 157 (314)
T ss_pred EEEEccC-chHHHHHHHHHHc----cCcHHHHHhhcCcchhhhcccccccccchhccHHHHHHhhhccCCeeccCCCchH
Confidence 9999999 8899999999988 689999999999998764 34678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcC-----CcceeecC--cccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCC--------
Q 047474 206 VNVLAREYCDDIKRKN-----KPIILSHH--MLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPP-------- 270 (326)
Q Consensus 206 ~~~lar~~~~k~~~~~-----~p~~l~~~--~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~-------- 270 (326)
|++|+||+|+|||+.+ .|..+.+. +||||+++ +|||||+|+|+|+|+|+|++|++||++|+|+|
T Consensus 158 HleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~~~td~~~~~~~~~ 236 (314)
T COG0180 158 HLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKKAATDGPTLIEYRK 236 (314)
T ss_pred HHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHHhccCCCCccccCC
Confidence 9999999999999543 46566655 99999554 89999999889999999999999999977775
Q ss_pred -CCCCCCcHHHHHHHhc
Q 047474 271 -KIVEGNPCLEYIKYII 286 (326)
Q Consensus 271 -~~~~~n~vl~~~~~~i 286 (326)
++|++||+++|+.++.
T Consensus 237 ~g~Pe~~~l~~~~~~~~ 253 (314)
T COG0180 237 GGKPEVCNLFEIYSAFF 253 (314)
T ss_pred CCCCCcchHHHHHHHhc
Confidence 6899999999999964
No 18
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=6e-57 Score=435.55 Aligned_cols=228 Identities=22% Similarity=0.323 Sum_probs=201.2
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
++++|+||+|||.+||||++..+.+|.++|+ |++++|+||||||++.. .++++++++++++++.|+|||+||+|+.
T Consensus 46 ~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~---~~~~~lr~~~~~~~a~~lA~GlDP~ks~ 121 (389)
T PLN02886 46 KKRVVSGVQPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLP---HDPRELGKATRSTAAIYLACGIDPSKAS 121 (389)
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCC---CCHHHHHHHHHHHHHHHHHcCcCccceE
Confidence 4679999999999999997654457999998 89999999999999963 5999999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc--c-CccchhhhhhhhhhhhhhccccCcEEEeccchhH
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE--Q-DELTAAQILYPCMQCADIFFLKADICQLGMDQRK 205 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~--~-~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~ 205 (326)
||+||+ +++|.++||.+.+ .++++++.|+.+++.+.. + +.+++|.|+||+||||||+++++|+||+|.||++
T Consensus 122 if~QS~-v~e~~eL~wil~~----~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~a~~VPVG~DQ~q 196 (389)
T PLN02886 122 VFVQSH-VPAHAELMWLLSC----STPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQADLVPVGEDQKQ 196 (389)
T ss_pred EEEeCC-CchhHHHHHHHHh----hCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcCCCeEEEccchHH
Confidence 999999 8899999999887 689999999999977542 2 4579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcC-----------------Ccceee---cCcccCCCCCCccccCCCCC--CceecCCCHHHHHHHH
Q 047474 206 VNVLAREYCDDIKRKN-----------------KPIILS---HHMLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKI 263 (326)
Q Consensus 206 ~~~lar~~~~k~~~~~-----------------~p~~l~---~~~lp~L~~g~~KMSKS~~~--s~I~L~D~~~~i~~KI 263 (326)
|++|+||+|+|||+.+ .|..+. .++||+|++|++|||||+|+ |+|||+|+|++|++||
T Consensus 197 H~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI 276 (389)
T PLN02886 197 HLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKI 276 (389)
T ss_pred HHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHH
Confidence 9999999999999743 233343 34799998877899999974 8999999999999999
Q ss_pred HhccCCC---------CCCCCCcHHHHHHHh
Q 047474 264 KKAYCPP---------KIVEGNPCLEYIKYI 285 (326)
Q Consensus 264 ~kA~c~~---------~~~~~n~vl~~~~~~ 285 (326)
++|+||+ ++|+.++++.++..+
T Consensus 277 ~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~ 307 (389)
T PLN02886 277 KRCKTDSFPGLEFDNPERPECNNLLSIYQLV 307 (389)
T ss_pred hcCCCCCCCCccCCCCCCcccccHHHHHHHc
Confidence 9999984 456778888888774
No 19
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-57 Score=461.27 Aligned_cols=230 Identities=25% Similarity=0.386 Sum_probs=213.8
Q ss_pred HCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHH
Q 047474 79 SAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPR 158 (326)
Q Consensus 79 ~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~ 158 (326)
.+||+++||+|||||++||++|+++++|++.++|++++|+|+|+|++ |+|+|+||++..++.+||.+++++++++|++|
T Consensus 405 ~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r 483 (682)
T PTZ00348 405 HSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSH 483 (682)
T ss_pred cCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHH
Confidence 37999999999999999999999999999999999999999999999 99999999665555589999999999999999
Q ss_pred HHhhhhhhcccccCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCC
Q 047474 159 IMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ 238 (326)
Q Consensus 159 ~~~~~~~~~r~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~ 238 (326)
++|+. + ++..++|+++||+|||+|++++++|+++||+|||+.++||||++++.. +|+.+.++++|+|+.|.
T Consensus 484 ~~r~~---g---~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~---~~~~~~~~~~p~l~~~~ 554 (682)
T PTZ00348 484 VEELY---G---GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI---ECIQALEGRVPALHRPG 554 (682)
T ss_pred HHHHh---c---CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc---cchhhcCCCCccccccc
Confidence 99987 2 345689999999999999999999999999999999999999999654 46667889999998788
Q ss_pred ccccCCCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHH
Q 047474 239 EKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMK 318 (326)
Q Consensus 239 ~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~ 318 (326)
.+|++|.++|+|||+|++++|++||++|||||+ +++|||++|++|+ ||+.++|+|+|+++|||+++|+|||||++||+
T Consensus 555 ~~~~~~s~~s~i~~~D~~~~i~~Ki~kA~Cpp~-~~~Npvl~~~~y~-~~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~ 632 (682)
T PTZ00348 555 AAPAVLGADDVLYLDDNDMDIRRKIKKAYSAPN-EEANPVISVAQHL-LAQQGALSIERGEANGGNVAYNTPEALVADCG 632 (682)
T ss_pred cccCCCCCCCeeeecCCHHHHHHHHHhCCCCCC-CCCCcHHHHHHHH-hcCCCeEEEecccccCCCeeeCCHHHHHHHHH
Confidence 899999889999999999999999999999995 5999999999998 89999999999999999999999999999998
Q ss_pred hh
Q 047474 319 KE 320 (326)
Q Consensus 319 ~~ 320 (326)
++
T Consensus 633 ~g 634 (682)
T PTZ00348 633 SG 634 (682)
T ss_pred cC
Confidence 75
No 20
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.1e-56 Score=415.86 Aligned_cols=227 Identities=20% Similarity=0.287 Sum_probs=204.7
Q ss_pred eEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCC-------CHHHHHHHHHHHHHHHHHcCC
Q 047474 51 ICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGG-------DLKKIQTVGRYLIEIWIAVGM 122 (326)
Q Consensus 51 ~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~-------~~~~i~~~~~~~~~~~~A~G~ 122 (326)
.+|+||+||| ++||||+++ ..++++||++|++++++|||+||+++||+|+ +++++++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3899999999 899999876 4479999999999999999999999998876 789999999999999999999
Q ss_pred C--CCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhhhhhhccccC----cE
Q 047474 123 R--TERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKA----DI 196 (326)
Q Consensus 123 d--~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQaaD~~~l~~----d~ 196 (326)
| |+++.|++||+|.... .++.++..+++++++++|+|+.++++|.+ +++++|+|+||+|||||++++++ ++
T Consensus 80 d~~p~k~~i~~ns~~~~~~--~~~~l~~~l~~~~~~~~l~~~~~~k~r~~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~~ 156 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPL--AHIQFLRDLGKHVYVNYMERKTSFQSRSE-EGISATEFTYPPLQAADFLLLNTTEGCDI 156 (273)
T ss_pred cCCCcceEEEEccccCCcc--cHHHHHHHHHccCcHHHHHhChHHHHHhc-CCCCchhhhhHHHHHHHHHHHhcccCCcE
Confidence 9 9999999999986432 47888889999999999999999999974 56899999999999999999977 99
Q ss_pred EEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCcee---cCCCHHHHHHHHHhccCCCCCC
Q 047474 197 CQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIY---MEDEEAEVNVKIKKAYCPPKIV 273 (326)
Q Consensus 197 ~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~---L~D~~~~i~~KI~kA~c~~~~~ 273 (326)
||||.|||+|+++|||+|+|+|....|..++.|+||+| +| .|||||.+ |+|| +.|+|++|++||++|+
T Consensus 157 vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l-~G-~KMSKS~~-~~i~l~~~~dsp~~i~~ki~~a~------ 227 (273)
T cd00395 157 QPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKL-DG-PKFGKSES-GPKWLDTEKTSPYEFYQFWINAV------ 227 (273)
T ss_pred EEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCC-CC-CcCCCCCC-CCccccccCCCHHHHHHHHHccc------
Confidence 99999999999999999999985457889999999999 77 49999986 5665 5899999999999996
Q ss_pred CCCcHHHHHHHhccCCCC
Q 047474 274 EGNPCLEYIKYIIFPWDK 291 (326)
Q Consensus 274 ~~n~vl~~~~~~ifp~~~ 291 (326)
+++++.|++++.+...+
T Consensus 228 -d~~v~~~~~~~t~~~~~ 244 (273)
T cd00395 228 -DSDVINILKYFTFLSKE 244 (273)
T ss_pred -HhHHHHHHHHHcCCCHH
Confidence 79999999998876443
No 21
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-55 Score=428.21 Aligned_cols=247 Identities=23% Similarity=0.308 Sum_probs=215.7
Q ss_pred HHHhhcccccCHHHHHHHHhc--CCCC-eEEEcccCCC-CccchhhhhHHHHHHHHHHC-CCeEEEEEecceeeecCCCC
Q 047474 26 LVRSIGEECIQEDELLNLLTK--KPQP-ICYDGFEPSG-RMHIAQGVMKAISVNKLTSA-GCKVKIWVADWFAQLNNKMG 100 (326)
Q Consensus 26 li~r~~~e~~~~~eL~~lL~~--~~~~-~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~a-G~~v~ilIaD~~a~~~~~~~ 100 (326)
+++|++ +++|++|+++|+. +++| .+|+|++||| +|||||.++.. ++++||++ |++++|+|||+|+++.+.
T Consensus 49 ~lrRgi--~~~hrd~~~~l~~~e~~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~-- 123 (383)
T PLN02486 49 FLRRGV--FFAHRDLEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKN-- 123 (383)
T ss_pred ccccce--eeeccCHHHHHHHHhcCCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcC--
Confidence 456777 8899999988874 3344 5999999999 79999976554 68899997 789999999999999863
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhh
Q 047474 101 GDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL 180 (326)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~ 180 (326)
.+++++++++++++++|+|+|+||+|+.|+.+++|. ..+||..++++++++|++++++. .++.+ ..++|+++
T Consensus 124 ~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~---~~~~~~~~~~l~r~~t~~~~~~~---~gf~~--~~~ig~~~ 195 (383)
T PLN02486 124 LSVEESQRLARENAKDIIACGFDVERTFIFSDFDYV---GGAFYKNMVKIAKCVTLNQVRGI---FGFSG--EDNIGKIS 195 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHH---hHhHHHHHHHHHhhCcHHHHHHh---hCcCC--CCCchhhh
Confidence 799999999999999999999999999999888864 34699999999999999999874 44432 34789999
Q ss_pred hhhhhhhhhcc------ccC-----cEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCc
Q 047474 181 YPCMQCADIFF------LKA-----DICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSA 249 (326)
Q Consensus 181 YP~lQaaD~~~------l~~-----d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~ 249 (326)
||+|||||+++ ++. +++|+|.||+||++++||+|+|+|+. +|++++++++|+|+++.+|||||.++|+
T Consensus 196 YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~-kp~~~~~~~lp~L~g~~~KMSkS~~nsa 274 (383)
T PLN02486 196 FPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYY-KPALIESRFFPALQGESGKMSASDPNSA 274 (383)
T ss_pred hHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCC-CcceeccccccCCCCCCCcCcCcCCCCe
Confidence 99999999984 343 79999999999999999999999965 7998999999999766679999999889
Q ss_pred eecCCCHHHHHHHHHh-ccCCC-----------CCCCCCcHHHHHHHhc
Q 047474 250 IYMEDEEAEVNVKIKK-AYCPP-----------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 250 I~L~D~~~~i~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~i 286 (326)
|||+|+|++|++||++ |||++ ++|+.+++++|+++|.
T Consensus 275 I~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~ 323 (383)
T PLN02486 275 IYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFL 323 (383)
T ss_pred eeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHc
Confidence 9999999999999999 99985 5788899999999974
No 22
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-55 Score=429.96 Aligned_cols=254 Identities=19% Similarity=0.305 Sum_probs=218.8
Q ss_pred CCHHHHHHHHHhhcc-cccCHHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeee
Q 047474 18 MSVEEKFRLVRSIGE-ECIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95 (326)
Q Consensus 18 ~~~~~~~~li~r~~~-e~~~~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~ 95 (326)
|+..+.++ +|++. ++..+++|++++..++++++|+||+||| ++||||+++. .++++||++||+++++||||||++
T Consensus 3 ~~~~~~l~--~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l-~~l~~lq~~G~~~~~ligd~ta~i 79 (410)
T PRK13354 3 MNILEQLK--WRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPL-MKLKRFQDAGHRPVILIGGFTGKI 79 (410)
T ss_pred CCHHHHHH--HcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHH-HHHHHHHHcCCeEEEEEccccccc
Confidence 45554444 38865 4556788998766665667999999999 7999997654 479999999999999999999999
Q ss_pred cCCCCC-------CHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcc
Q 047474 96 NNKMGG-------DLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGR 168 (326)
Q Consensus 96 ~~~~~~-------~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r 168 (326)
+||+|+ +.+++++|+.++.+++.+ |+|+++++|++||+|+... .|+.++.++++++++++|.+..+++.|
T Consensus 80 gDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~--~~~~~l~~v~~~~tv~~m~~~~~~~~R 156 (410)
T PRK13354 80 GDPSGKSKERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKL--NLIDFLRDYGKHFTVNRMLERDDVKSR 156 (410)
T ss_pred CCCCcccccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccc--cHHHHHHHHHhhccHHHHHhchHHHhh
Confidence 999864 456899999988887766 8999999999999987333 356666689999999999999889888
Q ss_pred cc-cCccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccC
Q 047474 169 SE-QDELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSK 243 (326)
Q Consensus 169 ~~-~~~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSK 243 (326)
.+ ++++++++|+||+|||||++++ +||+|+||+|||+|++++||+++|+|.. +|+.++.|+|+++ +|+ ||||
T Consensus 157 ~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~-~~~~lt~PlL~g~-dG~-KMsK 233 (410)
T PRK13354 157 LEREQGISFTEFFYPLLQAYDFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGE-EQFGLTMPLLEGA-DGT-KMGK 233 (410)
T ss_pred hccCCCCchhhhccHHHHhhhHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCC-CceEeccCCccCC-CCC-ccCC
Confidence 75 4578999999999999999999 9999999999999999999999999975 5889999999999 885 9999
Q ss_pred CCCCCceecCCC---HHHHHHHHHhccCCCCCCCCCcHHHHHHHhccC
Q 047474 244 SDPSSAIYMEDE---EAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP 288 (326)
Q Consensus 244 S~~~s~I~L~D~---~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp 288 (326)
|. +|+|||+|+ |+++++||+++ .+++++.|++++.+.
T Consensus 234 S~-~naI~L~d~~tsp~~i~qki~~~-------~D~~v~~~l~~~t~l 273 (410)
T PRK13354 234 SA-GGAIWLDPEKTSPYEFYQFWMNI-------DDRDVVKYLKLFTDL 273 (410)
T ss_pred CC-CCceeccCCCCCHHHHHHHHHcC-------ChHHHHHHHHHHhCC
Confidence 97 689999999 99999999976 668899999998754
No 23
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-55 Score=426.33 Aligned_cols=224 Identities=24% Similarity=0.307 Sum_probs=198.6
Q ss_pred eEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 047474 51 ICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFL 130 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~ 130 (326)
++|+|++|||.+||||++....+|.++|+ +++++++||||||+++++ .+++++++++.++++.|+|||+||+|+.||
T Consensus 4 ~v~sGiqPSG~~HLGnylG~ik~wv~lq~-~~~~~~~IADlHAlt~~~--~d~~~ir~~~~~~~a~~lA~GlDP~k~~if 80 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGVLKNWVKLQH-EYECFFFVADWHALTTHY--ETPEVIEKNVWDMVIDWLAAGVDPAQATLF 80 (398)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHHhc-CCcEEEEeecHHHHhCCC--CCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 59999999999999996543336788887 689999999999999864 599999999999999999999999999999
Q ss_pred eCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc----cCccchhhhhhhhhhhhhhccccCcEEEeccchhHH
Q 047474 131 WSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE----QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKV 206 (326)
Q Consensus 131 ~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~----~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~ 206 (326)
+||+ +++|++++|.+.+ .++++++.|+.+++.+.. .+..++|.++||+||||||+++++|+||+|.||+||
T Consensus 81 ~QS~-v~eh~eL~wil~~----~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qH 155 (398)
T PRK12283 81 IQSK-VPEHAELHLLLSM----ITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPH 155 (398)
T ss_pred ECCC-chHHHHHHHHHHh----hccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHH
Confidence 9999 8899999999998 578999999999966532 245789999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcCCc---------------------------------------------------------------
Q 047474 207 NVLAREYCDDIKRKNKP--------------------------------------------------------------- 223 (326)
Q Consensus 207 ~~lar~~~~k~~~~~~p--------------------------------------------------------------- 223 (326)
++|+||+|+|||+.+..
T Consensus 156 leLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (398)
T PRK12283 156 VEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGY 235 (398)
T ss_pred HHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhcccccc
Confidence 99999999999975432
Q ss_pred ------------ce--eecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCC--------CCCCCCCcHHHH
Q 047474 224 ------------II--LSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP--------PKIVEGNPCLEY 281 (326)
Q Consensus 224 ------------~~--l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~--------~~~~~~n~vl~~ 281 (326)
.. ..+++|||| +| +|||||. +|+|+|+|+|++|++||++|+|| |++|+.|++++|
T Consensus 236 ~~~~~~~~~~~P~~~~~~~~~I~gL-dg-~KMSKS~-~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~~g~Pe~~nl~~i 312 (398)
T PRK12283 236 LEGAGKIILPEPQALLTEASKMPGL-DG-QKMSKSY-GNTIGLREDPESVTKKIRTMPTDPARVRRTDPGDPEKCPVWQL 312 (398)
T ss_pred ccccCCcccCCCcccccCCCcccCC-CC-CcCCCCC-CCeeeCcCCHHHHHHHHHhCCCCCcccccCCCCCCCcCHHHHH
Confidence 11 124799999 88 7999997 58999999999999999999998 478999999999
Q ss_pred HHHh
Q 047474 282 IKYI 285 (326)
Q Consensus 282 ~~~~ 285 (326)
++++
T Consensus 313 ~~~~ 316 (398)
T PRK12283 313 HQVY 316 (398)
T ss_pred HHHh
Confidence 9995
No 24
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-49 Score=358.14 Aligned_cols=229 Identities=24% Similarity=0.303 Sum_probs=203.4
Q ss_pred CeEEEcccCCCCccchhhhhHHHHHHHHHHC---CCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 047474 50 PICYDGFEPSGRMHIAQGVMKAISVNKLTSA---GCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTER 126 (326)
Q Consensus 50 ~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~a---G~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k 126 (326)
.++++|++|||.+||||++--.-+|.+||+. |..+.+.|+|+||++-. .++..+|++...+.+.++|||+||+|
T Consensus 14 ~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp---~dp~~lrq~~~dm~A~lLAcGIdp~K 90 (347)
T KOG2713|consen 14 KRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVP---QDPAELRQATHDMAASLLACGIDPEK 90 (347)
T ss_pred ceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCC---CChHHHHHHHHHHHHHHHHhccCccc
Confidence 3599999999999999965444479999984 55699999999999964 57779999999999999999999999
Q ss_pred eEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc---cCccchhhhhhhhhhhhhhccccCcEEEeccch
Q 047474 127 VEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE---QDELTAAQILYPCMQCADIFFLKADICQLGMDQ 203 (326)
Q Consensus 127 ~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~---~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ 203 (326)
..+|.||+ +++|.++.|.+.+ .++++++.|..+++.+.. ....++|.|+||+||||||+.++++.+|+|.||
T Consensus 91 s~lF~QS~-Vpqh~el~WlLss----lt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQ 165 (347)
T KOG2713|consen 91 SSLFVQSD-VPQHAELSWLLSS----LTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQ 165 (347)
T ss_pred ceeeeecc-chHHHHHHHHHHh----ccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccH
Confidence 99999999 9999999999987 689999999999998763 244799999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcCC------ccee-e--cCcccCCCCCCccccCCCCC--CceecCCCHHHHHHHHHhccCCC--
Q 047474 204 RKVNVLAREYCDDIKRKNK------PIIL-S--HHMLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKAYCPP-- 270 (326)
Q Consensus 204 ~~~~~lar~~~~k~~~~~~------p~~l-~--~~~lp~L~~g~~KMSKS~~~--s~I~L~D~~~~i~~KI~kA~c~~-- 270 (326)
.||++|+|++|++||+.|+ |..+ . +..+++|.+|.+|||||+|+ +.|+|+|+|+.|.+||+||.||.
T Consensus 166 sQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~TD~~~ 245 (347)
T KOG2713|consen 166 SQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQTDNTS 245 (347)
T ss_pred HHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhccccc
Confidence 9999999999999998776 2212 1 46899999999999999985 88999999999999999998883
Q ss_pred -------CCCCCCcHHHHHHHhc
Q 047474 271 -------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 271 -------~~~~~n~vl~~~~~~i 286 (326)
++|+.|++++++.-+.
T Consensus 246 ~vtYd~~~RpgvsNLlni~aaVt 268 (347)
T KOG2713|consen 246 GVTYDPANRPGVSNLLNIYAAVT 268 (347)
T ss_pred ceeeCCccccchhHHHHHHHHHc
Confidence 6899999999999864
No 25
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-43 Score=319.58 Aligned_cols=271 Identities=23% Similarity=0.294 Sum_probs=229.2
Q ss_pred HhhcccccCHHHHHHHHhc--CCCCe-EEEcccCCC-CccchhhhhHHHHHHHHHH-CCCeEEEEEecceeeecCCCCCC
Q 047474 28 RSIGEECIQEDELLNLLTK--KPQPI-CYDGFEPSG-RMHIAQGVMKAISVNKLTS-AGCKVKIWVADWFAQLNNKMGGD 102 (326)
Q Consensus 28 ~r~~~e~~~~~eL~~lL~~--~~~~~-iy~G~~PTG-~lHLG~~~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~~~~~ 102 (326)
+|+. +++|+++..+|+. +++|. +|||.+||. +|||||.++.++ .+|||+ ...+.+|.+.|.+.++... .+
T Consensus 63 Rrg~--fFshRDf~~iLd~~eq~kpFyLYTGRGpSS~smHlGHliPFif-tKwlQe~F~vpLVIqlTDDEKflwK~--l~ 137 (397)
T KOG2145|consen 63 RRGI--FFSHRDFNLILDAYEQGKPFYLYTGRGPSSESMHLGHLIPFIF-TKWLQDVFDVPLVIQLTDDEKFLWKD--LT 137 (397)
T ss_pred hhcc--eeecccHHHHHHHHHcCCceEEEeCCCCCccccccccchhHHH-HHHHHHHhCCceEEEecccHHHHHhh--Cc
Confidence 3555 7899999999985 66786 999999998 999999988875 788998 5789999999999999863 68
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhh
Q 047474 103 LKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYP 182 (326)
Q Consensus 103 ~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP 182 (326)
.++..+.++++++++.|+||||.++.||.+.+ +... ..||..+++|++.+|+|+.+. +.|...++ .+|++.+|
T Consensus 138 ~eda~~~arENaKDIia~GFDp~kTfIFsn~~-y~g~-~~fy~nivki~k~vt~nqa~~---iFGF~~sd--~igk~~Fp 210 (397)
T KOG2145|consen 138 LEDAKKYARENAKDIIAVGFDPKKTFIFSNLD-YMGG-PAFYENIVKISKCVTLNQAKA---IFGFTDSD--CIGKIGFP 210 (397)
T ss_pred HHHHHHHHHhcccceEEeccCCcceEEEechh-hccC-cHHHHHHHHHhheechhhhee---eeccCCcc--ccccccCc
Confidence 89999999999999999999999999999998 4232 358999999999999999987 56665444 78999999
Q ss_pred hhhhhhhcccc-----------CcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCcee
Q 047474 183 CMQCADIFFLK-----------ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIY 251 (326)
Q Consensus 183 ~lQaaD~~~l~-----------~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~ 251 (326)
..|||..+... .+++|+.+||+++++++||+|+++++. +|+.+++.++|.||+.+.|||.|+|+++||
T Consensus 211 a~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~-Kpali~stffpaLqG~~~KMSASdpns~If 289 (397)
T KOG2145|consen 211 AIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYP-KPALIHSTFFPALQGAQTKMSASDPNSAIF 289 (397)
T ss_pred hhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCC-CcceeehhhchhhhCcccccccCCCCceEE
Confidence 99999988741 258999999999999999999999964 899999999999988889999999999999
Q ss_pred cCCCHHHHHHHHHh-ccCCC-----------CCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHh
Q 047474 252 MEDEEAEVNVKIKK-AYCPP-----------KIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKK 319 (326)
Q Consensus 252 L~D~~~~i~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~ 319 (326)
|+|++++|++||.+ ||+++ ++++....++|+++|+- ...+++--| +.|.+.|-|..+.++
T Consensus 290 ltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFld-DD~kLeq~r-------~~Y~~G~mltgEmKk 361 (397)
T KOG2145|consen 290 LTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLD-DDDKLEQIR-------KDYTSGEMLTGEMKK 361 (397)
T ss_pred ecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhc-cHHHHHHHH-------hhccccccchhHHHH
Confidence 99999999999999 99996 68899999999999752 222222222 346666666665554
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-37 Score=291.05 Aligned_cols=252 Identities=14% Similarity=0.167 Sum_probs=199.8
Q ss_pred HHHHHHhhcccccCHHH---HHHHHhcCC-CCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecC
Q 047474 23 KFRLVRSIGEECIQEDE---LLNLLTKKP-QPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNN 97 (326)
Q Consensus 23 ~~~li~r~~~e~~~~~e---L~~lL~~~~-~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~ 97 (326)
-.++-.|++.....++. ....|+..+ .+.+|+|||||+ ++|+||++..+ .+.++|.+||+++-+|++.+|.++|
T Consensus 33 L~~l~aR~l~~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGD 111 (467)
T KOG2623|consen 33 LTELKARGLFQTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGD 111 (467)
T ss_pred HHHHHhcccccccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccC
Confidence 45566677543332332 223333333 456999999999 99999976554 6999999999999999999999999
Q ss_pred CCCCCHH-------HHHHHHHHHHHHHHH----------cCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHH
Q 047474 98 KMGGDLK-------KIQTVGRYLIEIWIA----------VGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIM 160 (326)
Q Consensus 98 ~~~~~~~-------~i~~~~~~~~~~~~A----------~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~ 160 (326)
|||++.| .+++|++.+...+.+ +|..-.+-.|++|+||+.... ...++.++++++.++.|+
T Consensus 112 PSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~--llDFLa~vGrh~RvgsML 189 (467)
T KOG2623|consen 112 PSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIK--LLDFLAEVGRHFRVGSML 189 (467)
T ss_pred CCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhch--HHHHHHHhchhhhHHHHH
Confidence 9998754 455666555444322 244445778999999996654 567788999999999999
Q ss_pred hhhhhhcccc-cCccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHhcCc-CCcceeecCcccCC
Q 047474 161 RCCQIMGRSE-QDELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRK-NKPIILSHHMLPGL 234 (326)
Q Consensus 161 ~~~~~~~r~~-~~~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~~~~-~~p~~l~~~~lp~L 234 (326)
++.+++.|.+ ++++++.+|+|.+|||+|++++ +|.+|+||.|||+|++.+.|+++|+-.. ..++.++.|+|++.
T Consensus 190 ar~SV~~RLes~~GlSftEFtYQ~lQAYDfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLlTss 269 (467)
T KOG2623|consen 190 ARDSVKSRLESPNGLSFTEFTYQLLQAYDFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLLTSS 269 (467)
T ss_pred HHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeeeeEecC
Confidence 9999999987 4789999999999999999997 7999999999999999999999998752 34778999999999
Q ss_pred CCCCccccCCCCCCceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhcc
Q 047474 235 QQGQEKMSKSDPSSAIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF 287 (326)
Q Consensus 235 ~~g~~KMSKS~~~s~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~if 287 (326)
+| .|.+||. +|||||+. +|..+++..-++ -+..|-.+++.|.|
T Consensus 270 -tG-~KlGKSa-GnAvWLdp~~tspy~lYQfF~~~-------pDd~v~k~LklfTf 315 (467)
T KOG2623|consen 270 -TG-AKLGKSA-GNAVWLDPSKTSPYHLYQFFASL-------PDDDVEKFLKLFTF 315 (467)
T ss_pred -cc-hhhccCC-CceEEecCccCCcHHHHHHHHhC-------chhHHHHHHHHHhc
Confidence 77 6999998 68999987 688888888654 33556666766544
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.60 E-value=2.5e-15 Score=127.44 Aligned_cols=63 Identities=33% Similarity=0.356 Sum_probs=58.2
Q ss_pred hhhhhhhhhccccC---cEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCC
Q 047474 181 YPCMQCADIFFLKA---DICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 181 YP~lQaaD~~~l~~---d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
||+.|+||+.++.. +++++|.||+.|++.+++++++++...+|..++.++|++. +| +|||||.
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~-~g-~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGA-DG-TKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECC-CC-CcCCCCC
Confidence 99999999999999 9999999999999999999999986556889999999998 66 6999984
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.49 E-value=8.2e-13 Score=121.34 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=135.4
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV-------EF 129 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~-------~~ 129 (326)
.|||.|||||.....+.+...+..|...++-|.| ++.+ ++ .......+.+++..+|+++++. .+
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~~--r~---~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQE--RS---VPEAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCCC--CC---chHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 6899999999654444565566778787777888 3321 22 2344556678888999999973 27
Q ss_pred EeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHH
Q 047474 130 LWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVL 209 (326)
Q Consensus 130 ~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~l 209 (326)
+.||+-+ ..|...+.+ +.+ + ++ |..+|++.+++|-..++++.++.|.|+..+...
T Consensus 80 ~~QS~r~----~~y~~~~~~---------L~~------~--gd----g~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~ 134 (239)
T cd00808 80 YRQSERL----EIYRKYAEK---------LLE------K--GD----GFPTYHLANVVDDHLMGITHVIRGEEHLSSTPK 134 (239)
T ss_pred EeeeCCH----HHHHHHHHH---------HHH------c--CC----CCcccccHHHHhHHhcCCCEEEEChhhhhChHH
Confidence 8898822 234333221 111 1 12 678999999999999999999999999999999
Q ss_pred HHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecC----CCHHHHHHHHHh-ccCCCCCCCCCcHHHHHHH
Q 047474 210 AREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYME----DEEAEVNVKIKK-AYCPPKIVEGNPCLEYIKY 284 (326)
Q Consensus 210 ar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~----D~~~~i~~KI~k-A~c~~~~~~~n~vl~~~~~ 284 (326)
-+.+++.+|.. .|...+.|+|++. +| .||||+..+.+|--. -+|+.|..-+.. -.+++.+++....-++++.
T Consensus 135 q~~l~~aLg~~-~p~~~h~pll~~~-~g-~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l~~~ 211 (239)
T cd00808 135 QILLYEALGWE-PPKFAHLPLILNP-DG-KKLSKRKGDTSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEELIEL 211 (239)
T ss_pred HHHHHHHcCCC-CCceEeeccccCC-CC-CcccCCCCCccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHHHhc
Confidence 99999999965 6888888999999 67 699999854333221 268888888876 3343444455555555555
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.32 E-value=2.2e-11 Score=123.51 Aligned_cols=236 Identities=21% Similarity=0.296 Sum_probs=137.6
Q ss_pred eEEEcccCCCCccchhh--hhHHHHHHH-HHHCCCeE-EEEEecceeee-----------------c-------CCCCCC
Q 047474 51 ICYDGFEPSGRMHIAQG--VMKAISVNK-LTSAGCKV-KIWVADWFAQL-----------------N-------NKMGGD 102 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~--~~~~~~~~~-lq~aG~~v-~ilIaD~~a~~-----------------~-------~~~~~~ 102 (326)
.+-+|+.|||.+||||+ ++....+.+ +...|.+| ++..+|.|.-+ + +|.|..
T Consensus 26 ~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G~~ 105 (510)
T PRK00750 26 VVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFGCH 105 (510)
T ss_pred EEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCCCc
Confidence 48899999999999993 222223444 44579886 55666888531 1 122222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHH-hhhccCHHHHHhhhhhhcccccC---------
Q 047474 103 LKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMD-IARRNKLPRIMRCCQIMGRSEQD--------- 172 (326)
Q Consensus 103 ~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~-i~~~~tl~~~~~~~~~~~r~~~~--------- 172 (326)
.+-..++...+.+.+..+|++. .|+.+++.+. +..|-..+.. +.++-.+.++..- +.++...+
T Consensus 106 ~~~~~~~~~~~~~~~~~~gi~~---d~~~~t~~y~--~g~~~~~i~~~l~~~~~i~~il~~--~~~~~~~~~~~P~~pic 178 (510)
T PRK00750 106 ESYAEHFNAPLREFLDRFGIEY---EFISATECYK--SGRYDEAILTALENRDEIMEILLP--YLGEERQATYSPFLPIC 178 (510)
T ss_pred hHHHHHHHHHHHHHHHHcCCce---EEEehhhhhc--cCchHHHHHHHHHhHHHHHHHHHH--hcCCccCCCeeeeeeeC
Confidence 3344555566677888899975 5787777442 2122222211 1111222222111 11110000
Q ss_pred --------------ccchhhhhh----------hhhh-----------hhhhccccCcEEEeccchhH-HHHHHHHHHH-
Q 047474 173 --------------ELTAAQILY----------PCMQ-----------CADIFFLKADICQLGMDQRK-VNVLAREYCD- 215 (326)
Q Consensus 173 --------------~~~~~~~~Y----------P~lQ-----------aaD~~~l~~d~~~~G~DQ~~-~~~lar~~~~- 215 (326)
...-+.+.| ++.. ++-+..+++|+.+.|.||.. +...++.+++
T Consensus 179 ~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ 258 (510)
T PRK00750 179 PKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGVDFEPFGKDHASASYDTSKKIARE 258 (510)
T ss_pred CCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCCCEEeeCcccCcchHHHHHHHHHH
Confidence 000112233 1111 22334467899999999999 9999999999
Q ss_pred HhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCC---CCc
Q 047474 216 DIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPW---DKK 292 (326)
Q Consensus 216 k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~---~~~ 292 (326)
.++.. .|..+++.++..- +| +|||||. +|.|.+.| +- ++|+| +.++|+++.. ...
T Consensus 259 ilg~~-~P~~~~y~~v~~~-~G-~KMSKSk-GN~i~~~d----~l-----~~~~p---------d~lR~~l~~~~~~~~~ 316 (510)
T PRK00750 259 ILGGE-PPEPFVYELFLDK-KG-EKISKSK-GNVITIED----WL-----EYAPP---------ESLRLFMFARPKPAKR 316 (510)
T ss_pred HcCCC-CCeeeeeeeEEeC-CC-CcccccC-CCccCHHH----HH-----HHCCH---------HHHHHHHHhCCCCCCC
Confidence 88865 5888888888866 56 6999998 68888754 22 12443 5677555532 223
Q ss_pred eeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 293 FVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 293 ~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
+.+.. .+..|.+|+.|++.|...
T Consensus 317 ~~f~~-----l~~~~dey~rl~~~~~~~ 339 (510)
T PRK00750 317 LDFDV-----IPKLVDEYDRFERKYFGQ 339 (510)
T ss_pred CcccH-----HHHHHHHHHHHHHHHhcc
Confidence 44433 567788999999888643
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.10 E-value=3.8e-09 Score=96.56 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=126.5
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhH
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~ 136 (326)
.|||.|||||.....+.+...+..|.+.++=|=|.-. .+ ........+.+++..+|++.+.- .+.||+-+
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~------~R---~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDP------ER---SRPEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCC------CC---CChHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 6899999999543333444445567776665544321 11 12345566778889999999853 77888832
Q ss_pred HhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHH
Q 047474 137 NARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDD 216 (326)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k 216 (326)
+.|...+- ++.. .+ |..+|-+--+.|=...+++.++-|.|+..+-..-+.+++.
T Consensus 79 ----~~y~~~~~---------~L~~----------~g---g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~ 132 (230)
T cd00418 79 ----DLYRAYAE---------ELIK----------KG---GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEA 132 (230)
T ss_pred ----HHHHHHHH---------HHHH----------cC---CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHH
Confidence 33433222 1111 11 5556666667777778999999999999999999999999
Q ss_pred hcCcCCcceeecCcccCCCCCCccccCCCCCCceecC----CCHHHHHHHHHh-ccCCCCCCCCCcHHHHHHH
Q 047474 217 IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYME----DEEAEVNVKIKK-AYCPPKIVEGNPCLEYIKY 284 (326)
Q Consensus 217 ~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~----D~~~~i~~KI~k-A~c~~~~~~~n~vl~~~~~ 284 (326)
+|. +.|...+.|+|.+. +| +||||++.+.+|-=. -.|+.|..-+.. -.+++...+...+.++++.
T Consensus 133 Lg~-~~P~~~H~pll~~~-~g-~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~li~~ 202 (230)
T cd00418 133 LGW-EPPRFYHFPRLLLE-DG-TKLSKRKLNTTLRALRRRGYLPEALRNYLALIGWSKPDGHELFTLEEMIAA 202 (230)
T ss_pred cCC-CCCeEEEeeeeeCC-CC-CCccCcCCCcCHHHHHHCCCcHHHHHHHHHHcCCCCCCCccccCHHHHHHh
Confidence 996 47999999999998 77 699999865444222 368888888865 3344433455555665554
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.99 E-value=2.8e-08 Score=96.39 Aligned_cols=193 Identities=21% Similarity=0.274 Sum_probs=111.2
Q ss_pred eEEEcccCCCCccchhhh--hHHHHHHHHHH-CCCeE-EEEEecceee---------------ecC-------CCCCCHH
Q 047474 51 ICYDGFEPSGRMHIAQGV--MKAISVNKLTS-AGCKV-KIWVADWFAQ---------------LNN-------KMGGDLK 104 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~~--~~~~~~~~lq~-aG~~v-~ilIaD~~a~---------------~~~-------~~~~~~~ 104 (326)
.+-+|+-|||.+||||+. +..-.+.++++ .|++| ++..+|.|.- ++- |.|...+
T Consensus 22 ~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~~~ 101 (353)
T cd00674 22 VVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCCES 101 (353)
T ss_pred EEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCCHH
Confidence 377899999999999932 22223555554 69886 5566788821 111 1222233
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHH-HhhhccCHHHHHhhhhhhcccccC--------ccc
Q 047474 105 KIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVM-DIARRNKLPRIMRCCQIMGRSEQD--------ELT 175 (326)
Q Consensus 105 ~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~-~i~~~~tl~~~~~~~~~~~r~~~~--------~~~ 175 (326)
-..++...+.+.+..+|++. .++.+++.+ .+ ..|=..+. .+.+.-.+.++... +.++...+ ...
T Consensus 102 ~~d~~~~~f~~~l~~lgi~~---d~~~~T~~y-~~-g~~~~~i~~~L~~~~~I~~i~~~--~~~~~~~~~~~P~~p~c~~ 174 (353)
T cd00674 102 YAEHFERPFEESLEKLGIEV---EFISQSQMY-KS-GLYDENILIALEKRDEIMAILNE--YRGRELQETWYPFMPYCEK 174 (353)
T ss_pred HHHHHHHHHHHHHHHcCCee---eeeecCCch-hh-chHHHHHHHHHHHCChHHHHHHH--hcCCccCCCceeeeeecCC
Confidence 45556666778888999975 478887743 22 12222221 11222233333221 11110000 001
Q ss_pred h--------------hhhhhhh---------------------hhhhhhccccCcEEEeccchhHH---HHHHHHHHH-H
Q 047474 176 A--------------AQILYPC---------------------MQCADIFFLKADICQLGMDQRKV---NVLAREYCD-D 216 (326)
Q Consensus 176 ~--------------~~~~YP~---------------------lQaaD~~~l~~d~~~~G~DQ~~~---~~lar~~~~-k 216 (326)
. +.+.|-+ ==++-+..+++|+.++|.||..+ +..++.+++ .
T Consensus 175 cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~i 254 (353)
T cd00674 175 CGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREI 254 (353)
T ss_pred cCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHHHHH
Confidence 1 1222221 11233445678999999999999 999999999 8
Q ss_pred hcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 217 IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 217 ~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
++.. .|..+...++. +.+| .|||||. +|.|.+.|
T Consensus 255 lg~~-~P~~~~ye~V~-l~gg-~KMSKSk-GnvI~~~d 288 (353)
T cd00674 255 FGGE-PPVPVMYEFIG-LKGG-GKMSSSK-GNVITPSD 288 (353)
T ss_pred hCCC-CCeEEEeeeEE-eCCC-CccCCCC-CCcCCHHH
Confidence 8865 47666666664 4233 6999998 68887754
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.61 E-value=6.2e-07 Score=91.06 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=55.8
Q ss_pred eEEEcccCCCCccchhh--hhHHHHHHH-HHHCCCeE-EEEEecce----------------------eeecCCCCCCHH
Q 047474 51 ICYDGFEPSGRMHIAQG--VMKAISVNK-LTSAGCKV-KIWVADWF----------------------AQLNNKMGGDLK 104 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~--~~~~~~~~~-lq~aG~~v-~ilIaD~~----------------------a~~~~~~~~~~~ 104 (326)
.+-+|+.|||.+||||+ ++..-.+.+ +...|+++ +|..+|.| ..+-||.|....
T Consensus 21 ~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~~s 100 (515)
T TIGR00467 21 TVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCKTS 100 (515)
T ss_pred EEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCcHH
Confidence 48899999999999993 222223444 44578876 67778888 222344444434
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeCChhH
Q 047474 105 KIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136 (326)
Q Consensus 105 ~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~ 136 (326)
-..++-..+.+.+..+|++ .+|+.+++.|
T Consensus 101 ~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y 129 (515)
T TIGR00467 101 YAEHFLIPFLESLPVLGIN---PEFIRASKQY 129 (515)
T ss_pred HHHHHHHHHHHHHHHcCCe---EEEEEHHHhh
Confidence 4455555666778889996 5899999855
No 33
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.52 E-value=7.1e-07 Score=86.28 Aligned_cols=239 Identities=19% Similarity=0.250 Sum_probs=100.1
Q ss_pred eEEEcccCCCCccchhh--hhHH-HHHHHHHHCCCeE-EEEEecce----------------eeecCCCCCCH-------
Q 047474 51 ICYDGFEPSGRMHIAQG--VMKA-ISVNKLTSAGCKV-KIWVADWF----------------AQLNNKMGGDL------- 103 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~--~~~~-~~~~~lq~aG~~v-~ilIaD~~----------------a~~~~~~~~~~------- 103 (326)
.+-+|+.|||.+||||+ ++.. +-.+.|.+.|.++ .|+.+|.. .+++.|...-+
T Consensus 26 v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G~~~ 105 (360)
T PF01921_consen 26 VFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFGCHE 105 (360)
T ss_dssp EEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTSSSS
T ss_pred EEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCCCCc
Confidence 49999999999999993 2222 2244477789876 55666643 23322211100
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHH-hhhccCHHHHHhhh----------------hhh
Q 047474 104 KKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMD-IARRNKLPRIMRCC----------------QIM 166 (326)
Q Consensus 104 ~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~-i~~~~tl~~~~~~~----------------~~~ 166 (326)
.-.+++-..+.+.+..+|++ ++|+.+++.+. +..|=..+.. +.+.-.+.++.... .--
T Consensus 106 SyaeH~~~~~~~~L~~~gie---~e~~s~te~Y~--sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC~~c 180 (360)
T PF01921_consen 106 SYAEHFNAPFEEFLDEFGIE---YEFISQTEMYR--SGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPICEKC 180 (360)
T ss_dssp CHHHHHHHHHHHHHHTTT------EEEECCCCCC--TTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEETTT
T ss_pred cHHHHHHHHHHHHHHHcCCc---eEEEeHHHhhh--CCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeecccc
Confidence 11333444455666778996 47999988542 1222222211 11222222222111 001
Q ss_pred ccccc---Ccc--chhhhhhhh----------------------hhhhhhccccCcEEEeccchhH---HHHHHHHHHHH
Q 047474 167 GRSEQ---DEL--TAAQILYPC----------------------MQCADIFFLKADICQLGMDQRK---VNVLAREYCDD 216 (326)
Q Consensus 167 ~r~~~---~~~--~~~~~~YP~----------------------lQaaD~~~l~~d~~~~G~DQ~~---~~~lar~~~~k 216 (326)
||... ... .-+.+.|-| ==++-+..+++|+.|.|.|+-. ....+.++|++
T Consensus 181 Gri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~WkvDW~mRW~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~ 260 (360)
T PF01921_consen 181 GRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWKVDWPMRWAALGVDFEPFGKDHASPGGSYDTSKRIARE 260 (360)
T ss_dssp EE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HHHHHHHHHHHTT-SEEEEEHHHHCTTSHHHHHHHHHHH
T ss_pred CCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCCCcChhhhhhcCceeccCCCccCCCCCChhhHHHHHHH
Confidence 12000 000 123344433 1123344568999999999988 99999999965
Q ss_pred -hcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCC--ce
Q 047474 217 -IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK--KF 293 (326)
Q Consensus 217 -~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~--~~ 293 (326)
+|.. .|..+.--++. + .|.+|||||. ++.|-+.| +- .+.+| +.++|+++.... .+
T Consensus 261 i~g~~-pP~~~~YE~~~-~-~g~~kmSsSk-G~~~t~~e----~L-----~~~~P---------E~lr~l~~~~~P~~~~ 318 (360)
T PF01921_consen 261 ILGYE-PPVPFPYEFFL-D-KGGGKMSSSK-GNGITPEE----WL-----EYAPP---------ESLRYLMARTKPNKAK 318 (360)
T ss_dssp CC------EEEEE--EE-E-S---------------HHH----HH-----TTS-H---------HHHHHHHHCS-TTS-E
T ss_pred HhCCC-CCCCCCeeEEE-e-CCCcccccCC-CCccCHHH----HH-----HhcCH---------HHHHHHHcccCCCcce
Confidence 5543 46654433332 3 3336999998 46665533 11 11111 235555555222 23
Q ss_pred eEeecccCCCCceecCHHHHHHHHH
Q 047474 294 VVERSEANGGNKTFETMKNLLLIMK 318 (326)
Q Consensus 294 ~i~r~~~~gg~~~y~~~eel~~~~~ 318 (326)
.+ ..+.+-.+.|..|+.+++.|-
T Consensus 319 ~~--~~~~~i~~~~Deyd~~~~~y~ 341 (360)
T PF01921_consen 319 DF--SFDLVIPRLYDEYDRLERKYF 341 (360)
T ss_dssp EE----STTHHHHHHHHHHHHHHHT
T ss_pred Ee--ccCcchHHHHHHHHHHHHHhc
Confidence 33 222234566788888888875
No 34
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.27 E-value=2.8e-05 Score=79.72 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=117.2
Q ss_pred CCCHHHHHHHHHhhcccccCHHH--------HHHHHhc-CCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEE
Q 047474 17 QMSVEEKFRLVRSIGEECIQEDE--------LLNLLTK-KPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIW 87 (326)
Q Consensus 17 ~~~~~~~~~li~r~~~e~~~~~e--------L~~lL~~-~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~il 87 (326)
.||.||+.+.+....-|.+.+.+ |-.|=+. +++.+...+=.|||.+||||.-...+.+......|.+.++=
T Consensus 60 ~ms~ee~~~~l~~~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLR 139 (567)
T PRK04156 60 SLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILR 139 (567)
T ss_pred cCCHHHHHHHHHHhChhhhhhhhhhcccccCCCCCCCCCCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 48899988888876554421111 1111111 22334677778999999999533322233233456676666
Q ss_pred EecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhc----cCHHHHHhhh
Q 047474 88 VADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARR----NKLPRIMRCC 163 (326)
Q Consensus 88 IaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~----~tl~~~~~~~ 163 (326)
+=|. +.+..+ ........+.+++..+|++++. ++.||+.+... ..|...+.+-+.. ++-.++.+..
T Consensus 140 idDT----Dpk~~R---~~~e~~~~I~edL~wLGl~wD~--~~~qSdr~~~y-~~~a~~Li~~G~AY~C~cs~ee~~~~r 209 (567)
T PRK04156 140 FEDT----DPRTKR---PDPEAYDMILEDLKWLGVKWDE--VVIQSDRLEIY-YEYARKLIEMGGAYVCTCDPEEFKELR 209 (567)
T ss_pred EccC----CCCccc---chHHHHHHHHHHHHHcCCCCCC--ccCcccCHHHH-HHHHHHHHHcCCCccCCCCHHHHHHHH
Confidence 5554 221111 1233335667888999999984 68899844222 1122222111111 2222221100
Q ss_pred --hh--------------------hc---------ccccC----ccc------------------hhhhhhhhhhhh---
Q 047474 164 --QI--------------------MG---------RSEQD----ELT------------------AAQILYPCMQCA--- 187 (326)
Q Consensus 164 --~~--------------------~~---------r~~~~----~~~------------------~~~~~YP~lQaa--- 187 (326)
.. .| |...+ ..+ -+-..||.++-|
T Consensus 210 ~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~V 289 (567)
T PRK04156 210 DAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAV 289 (567)
T ss_pred hcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCcee
Confidence 00 00 11000 000 011235554332
Q ss_pred hhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCC
Q 047474 188 DIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 188 D~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
|-...+.+.++-|.|...+-..=..+.+.+|.. .|...|.|+|. . +| .|||||.
T Consensus 290 DD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~-~P~~~H~~~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 290 DDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWE-YPETIHYGRLK-I-EG-FVLSTSK 343 (567)
T ss_pred eecCCCCCeEEcccccccChHHHHHHHHHcCCC-CceEEEcceec-C-CC-ceeeccc
Confidence 333347899999999988887778888888865 59999999986 5 66 5999997
No 35
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=5.1e-05 Score=75.94 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=65.3
Q ss_pred ccccCcEEEeccchh---HHHHHHHHHHHH-hcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHh
Q 047474 190 FFLKADICQLGMDQR---KVNVLAREYCDD-IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265 (326)
Q Consensus 190 ~~l~~d~~~~G~DQ~---~~~~lar~~~~k-~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~k 265 (326)
..+++|+.|.|.|+. +-..-++++++. +|.. .|..+.-- .-+| .|++|||||. ++.|-+.|=-
T Consensus 226 ~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~-pP~~~~YE-~i~l-kg~~~mSsSk-G~~i~~~dwl--------- 292 (521)
T COG1384 226 AALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYE-PPVPFVYE-WILL-KGGGKMSSSK-GNVISLSDWL--------- 292 (521)
T ss_pred hccCcccccCCcccccccCchHHHHHHHHHhcCCC-CCCCCceE-EEEe-cCCcccccCC-CcEEcHHHHH---------
Confidence 346789999999975 566778888884 5543 35432211 2234 3347999998 6888775411
Q ss_pred ccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHh
Q 047474 266 AYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKK 319 (326)
Q Consensus 266 A~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~ 319 (326)
.+++| +.++|+++.....-.+.-..+-|-.+.|..|+.+++.|-.
T Consensus 293 ev~~p---------E~lry~~~r~kP~r~~~~d~~~~il~lvDEydr~e~~Y~~ 337 (521)
T COG1384 293 EVAPP---------EVLRYLIARTKPNRHIDFDFDLGILKLVDEYDRLERIYFG 337 (521)
T ss_pred HhcCH---------hHeeeeeeecCCCcceecCCCCChhHHHHHHHHHHHHHhc
Confidence 12232 2466766655333333333444566778888888888743
No 36
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.10 E-value=7e-05 Score=67.70 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=94.3
Q ss_pred EEcccCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecceeeecC---CCCCC------HHHH-HHHHHHHHHHHHH
Q 047474 53 YDGFEPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFAQLNN---KMGGD------LKKI-QTVGRYLIEIWIA 119 (326)
Q Consensus 53 y~G~~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a~~~~---~~~~~------~~~i-~~~~~~~~~~~~A 119 (326)
|++--|+|.+||||+-...+ -+.++.+ .|++|+.. -+++| +.... +.++ ......+.+.+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~-----~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTRE-----YYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGR 80 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEE-----eccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677999999999432211 3444444 79998643 33333 11000 1122 2223445677888
Q ss_pred cCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhc--------cCHHHHHhh-hhhhcccccCccchhhhhhhh---hhhh
Q 047474 120 VGMRTERVEFLWSSEEINARADEYWPLVMDIARR--------NKLPRIMRC-CQIMGRSEQDELTAAQILYPC---MQCA 187 (326)
Q Consensus 120 ~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~--------~tl~~~~~~-~~~~~r~~~~~~~~~~~~YP~---lQaa 187 (326)
+|+.++ .+...|+ +.......|..+.+-+-. +.+...... .-+.-| +=|..+|.. -.+.
T Consensus 81 L~i~~d--~~~~es~-~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~~~d~vl~r------sdG~~~Y~~~DlA~~~ 151 (212)
T cd00671 81 LDVRFD--VWFGESS-YLGLMGKVVELLEELGLLYEEDGALWLDLTEFGDDKDRVLVR------SDGTYTYFTRDIAYHL 151 (212)
T ss_pred hCCcCc--eecchhh-hhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCCCCCeEEEE------CCCCccchHHHHHHHH
Confidence 998775 3556666 323333455544431110 000000000 000011 124445552 1111
Q ss_pred hhccccCcEE--EeccchhHHHHHHHHHHHHhcCcCCc--ceeecCcccCCCCCCccccCCC
Q 047474 188 DIFFLKADIC--QLGMDQRKVNVLAREYCDDIKRKNKP--IILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 188 D~~~l~~d~~--~~G~DQ~~~~~lar~~~~k~~~~~~p--~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
|=+..++|.+ +.|.||..|+.-.+.+++.+|....| .++..++|..- +| +||||..
T Consensus 152 ~~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~-~~-~kmS~R~ 211 (212)
T cd00671 152 DKFERGADKIIYVVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLP-KE-GKMSTRA 211 (212)
T ss_pred HHHhcCCCEEEEEECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcC-CC-CCCCCCC
Confidence 1122467866 89999999999999999999964223 34445777654 56 6999985
No 37
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.03 E-value=0.00015 Score=68.91 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=104.7
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhH
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~ 136 (326)
.|||.|||||.....+.+...+..|.+.++=|-|. |+ .+ ........+.+++..+|++.|.- .+.||+-+
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt-----D~-~R---~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI-----DP-PR---EVPGAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC-----CC-Cc---cchHHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 68899999995444334555566788888877763 22 12 22344566778899999999863 66688833
Q ss_pred HhhhhhhHHHHHHhh----hccCHHHHHhhhh--------hhc--ccc--cCc---------------------------
Q 047474 137 NARADEYWPLVMDIA----RRNKLPRIMRCCQ--------IMG--RSE--QDE--------------------------- 173 (326)
Q Consensus 137 ~~~~~~~~~~~~~i~----~~~tl~~~~~~~~--------~~~--r~~--~~~--------------------------- 173 (326)
..=..+...+.+-+ =.+|-.++.+..+ +-+ |.- .+.
T Consensus 83 -~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~ 161 (299)
T PRK05710 83 -DAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQD 161 (299)
T ss_pred -HHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeC
Confidence 11111211221111 1234444432210 000 100 000
Q ss_pred c--ch---------hhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCcccc
Q 047474 174 L--TA---------AQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMS 242 (326)
Q Consensus 174 ~--~~---------~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMS 242 (326)
. .+ |..+|-+--+.|=...+++.++=|.|...+--.=.-+.+.+|.. .|...|.|+|.+. +| +|+|
T Consensus 162 ~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~-~P~y~H~pll~~~-~g-~kLS 238 (299)
T PRK05710 162 LALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLP-TPRYLHLPLVLNA-DG-QKLS 238 (299)
T ss_pred CCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCC-CCeEEEeecccCC-CC-Cccc
Confidence 0 00 11222222222333346788999999877766667788888865 6999999999999 77 6999
Q ss_pred CCCCCCceecCC
Q 047474 243 KSDPSSAIYMED 254 (326)
Q Consensus 243 KS~~~s~I~L~D 254 (326)
|++. +..+.+
T Consensus 239 Kr~~--~~~i~~ 248 (299)
T PRK05710 239 KQNG--APALDA 248 (299)
T ss_pred ccCC--ccchhh
Confidence 9974 455544
No 38
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.97 E-value=0.00031 Score=71.27 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=62.3
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh-
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK- 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k- 265 (326)
+.+.++-|.||..+.-.-..+.+.+|.. .|.+.|.|+|.++ +| +||||.+.. ..+.+ .|+.|.+-+..
T Consensus 196 ~ithVIRG~d~~~~t~~q~~l~~aLG~~-~p~~~H~plv~~~-~g-~KLSKR~g~--~~i~~~r~~G~~Peai~n~la~L 270 (513)
T PRK14895 196 GITHIIRGDDHLTNAARQLAIYQAFGYA-VPSMTHIPLIHGA-DG-AKLSKRHGA--LGIEAYKDMGYLPESLCNYLLRL 270 (513)
T ss_pred CCCEEEECchHhhhHHHHHHHHHHcCCC-CCeEEEEEeEEcC-CC-CccccccCc--hhHHHHHHCCCCHHHHHHHHHHh
Confidence 6789999999999998888999999954 6888999999999 77 699999753 33332 67888887764
Q ss_pred ccCCCCCCCCCcHHHHHHH
Q 047474 266 AYCPPKIVEGNPCLEYIKY 284 (326)
Q Consensus 266 A~c~~~~~~~n~vl~~~~~ 284 (326)
-.+. +..|.-+.-++++.
T Consensus 271 G~s~-~~~e~~~~~el~~~ 288 (513)
T PRK14895 271 GWSH-GDDEIISMTQAIDW 288 (513)
T ss_pred CCCC-CCcCCCCHHHHHhh
Confidence 2332 22344444444444
No 39
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.97 E-value=0.0002 Score=65.04 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=80.0
Q ss_pred eEEEcccCCCCccchhhhhHH--HHHHHHHH-CCCeEEEEEecceeeecCC-------CCCCHH-HHHHHHHHHHHHHHH
Q 047474 51 ICYDGFEPSGRMHIAQGVMKA--ISVNKLTS-AGCKVKIWVADWFAQLNNK-------MGGDLK-KIQTVGRYLIEIWIA 119 (326)
Q Consensus 51 ~iy~G~~PTG~lHLG~~~~~~--~~~~~lq~-aG~~v~ilIaD~~a~~~~~-------~~~~~~-~i~~~~~~~~~~~~A 119 (326)
...+|-=|-|.+||||.-... --+.++.+ .|++|.++.+ ++. .++| .+.++. -.+.+...+.+++.+
T Consensus 23 ~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g-~dd-~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~ 100 (213)
T cd00672 23 MYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQN-ITD-IDDKIIKRAREEGLSWKEVADYYTKEFFEDMKA 100 (213)
T ss_pred EEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEee-cCC-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 356777888899999932111 13555555 6888877644 221 1222 122332 234455666677788
Q ss_pred cCCCC-CceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhhhhhhccccCcEEE
Q 047474 120 VGMRT-ERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQ 198 (326)
Q Consensus 120 ~G~d~-~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~ 198 (326)
+|+.+ +. +... |-+-|. -+|...+--..|+..
T Consensus 101 l~i~~~d~--~~rt-----------Wh~ec~----------------------------------am~~~~lg~~~dih~ 133 (213)
T cd00672 101 LNVLPPDV--VPRV-----------WHIECS----------------------------------AMAMKYLGETFDIHG 133 (213)
T ss_pred cCCCCCCc--ceee-----------hhHHHH----------------------------------HHHHHHcCCCccEEe
Confidence 88776 32 2211 322221 111122223458888
Q ss_pred eccchh-HHHHHHHHHHHH-hcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 199 LGMDQR-KVNVLAREYCDD-IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 199 ~G~DQ~-~~~~lar~~~~k-~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
+|.|.. +|++.-.-...- .|....-..++. -+-.+ +| +|||||. +|.|.+.|
T Consensus 134 ~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~-~~v~~-~g-~KMSKs~-Gn~v~~~d 187 (213)
T cd00672 134 GGVDLIFPHHENEIAQSEAATGKPFARYWLHT-GHLTI-DG-EKMSKSL-GNFITVRD 187 (213)
T ss_pred ecCCCCcChHHHHHHHHHHHhCCCCCcEEEEE-EEEec-cC-cchhhcC-CCccCHHH
Confidence 999975 555544333333 333222233444 44456 66 6999998 57777755
No 40
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.97 E-value=7.3e-05 Score=68.92 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=95.6
Q ss_pred EcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCC
Q 047474 54 DGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSS 133 (326)
Q Consensus 54 ~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~S 133 (326)
+|-.|||.+||||.....+.+...+..|.+.++=|-|. +++ +. ........++.+++..+|++++ ....||
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt----D~~--r~-~~~~~~~~~i~~dL~wLGl~~d--~~~~qS 76 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT----DPR--TK-RPDPEAYDMIPEDLEWLGVKWD--EVVIAS 76 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC----CCC--cc-cchHHHHHHHHHHHHHcCCCCC--Cccchh
Confidence 46689999999995433222222334555665555554 221 20 0123333457789999999998 467888
Q ss_pred hhHHhhhhhhHHHHH---HhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhh---hhhhccccCcEEEeccchhHHH
Q 047474 134 EEINARADEYWPLVM---DIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQ---CADIFFLKADICQLGMDQRKVN 207 (326)
Q Consensus 134 d~~~~~~~~~~~~~~---~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQ---aaD~~~l~~d~~~~G~DQ~~~~ 207 (326)
+-+ +.|...+- +-+.... ..+. ++. ..+||..+ +.|=...+++.++-|.|...+-
T Consensus 77 ~r~----~~y~~~~~~Li~~G~aY~----------~~~~-~~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t 137 (240)
T cd09287 77 DRI----ELYYEYARKLIEMGGAYV----------HPRT-GSK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNT 137 (240)
T ss_pred ccH----HHHHHHHHHHHHcCCccc----------Cccc-CCc----EEEEEccccceeeeccccCCCeEEechhhhhCC
Confidence 844 22332222 1111111 0111 111 12344444 3344456889999999988777
Q ss_pred HHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC
Q 047474 208 VLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246 (326)
Q Consensus 208 ~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~ 246 (326)
..=.-+.+.++.. .|...|.|+|.. +| +||||.+.
T Consensus 138 ~~q~~l~~~Lg~~-~P~~~H~pll~~--~~-~kLSKR~~ 172 (240)
T cd09287 138 EKQRYIYEYFGWE-YPETIHWGRLKI--EG-GKLSTSKI 172 (240)
T ss_pred HHHHHHHHHcCCC-CCcEEeeeeecC--CC-Ceeccccc
Confidence 7777788888864 688889999864 45 79999973
No 41
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.90 E-value=9.4e-05 Score=74.60 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=47.1
Q ss_pred CCCeEE-EcccCCCCccchhhhhHH--HHHHHHHH-CCCeEEEEEe-cceeeecCC-------CCCCHHHH-HHHHHHHH
Q 047474 48 PQPICY-DGFEPSGRMHIAQGVMKA--ISVNKLTS-AGCKVKIWVA-DWFAQLNNK-------MGGDLKKI-QTVGRYLI 114 (326)
Q Consensus 48 ~~~~iy-~G~~PTG~lHLG~~~~~~--~~~~~lq~-aG~~v~ilIa-D~~a~~~~~-------~~~~~~~i-~~~~~~~~ 114 (326)
+++.+| ||--|.|.+||||..... -.+.++++ .|++|++..+ |.| +++ .+.++.++ +.+...+.
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~---ddki~~~A~~~g~~~~e~~~~~~~~f~ 98 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDI---DDKIIKRANEEGESIKELTERYIAAFH 98 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCC---cHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345666 999999999999932211 13555554 6999988766 333 221 12333333 44556677
Q ss_pred HHHHHcCC-CCC
Q 047474 115 EIWIAVGM-RTE 125 (326)
Q Consensus 115 ~~~~A~G~-d~~ 125 (326)
+++.++|+ .++
T Consensus 99 ~~~~~Lgi~~~d 110 (463)
T PRK00260 99 EDMDALNVLPPD 110 (463)
T ss_pred HHHHHcCCCCCC
Confidence 88999999 454
No 42
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.90 E-value=0.00057 Score=69.18 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=69.0
Q ss_pred hhhhhhhhhc---cccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC---
Q 047474 181 YPCMQCADIF---FLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED--- 254 (326)
Q Consensus 181 YP~lQaaD~~---~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D--- 254 (326)
+|..+.||++ ..+.+.++.|.||..+.-.-..+.+.+|.. .|.+.|.|++.++ +| +||||.+. ++.+.+
T Consensus 192 ~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~-~p~~~H~pli~~~-~g-~klSKR~g--~~~l~~l~~ 266 (476)
T PRK01406 192 TPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWE-VPVFAHLPLILGP-DG-KKLSKRHG--ATSVEQYRD 266 (476)
T ss_pred CccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCC-CCeEEEeeeeeCC-CC-CcccCcCC--ccCHHHHHH
Confidence 4444555543 347789999999999998888999999964 6888889999898 67 69999974 565543
Q ss_pred ---CHHHHHHHHHhc-cCCCCCCCCCcHHHHHHHhc
Q 047474 255 ---EEAEVNVKIKKA-YCPPKIVEGNPCLEYIKYII 286 (326)
Q Consensus 255 ---~~~~i~~KI~kA-~c~~~~~~~n~vl~~~~~~i 286 (326)
.|+.+.+-+... .+ ++..+....-+.+++|.
T Consensus 267 ~G~~p~Ai~n~l~~lG~s-~~~~e~~~~~~~i~~f~ 301 (476)
T PRK01406 267 MGYLPEALLNYLALLGWS-HGDQEIFSLEELIELFD 301 (476)
T ss_pred CCCCHHHHHHHHHHhCCC-CCccccCCHHHHHHhcC
Confidence 677777766552 22 22334344445555543
No 43
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.88 E-value=0.00083 Score=67.91 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=68.8
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK 265 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k 265 (326)
.+.+.++.|.||..+.-.-..+.+.+|.. .|...|.|++.++ +| +||||.++ ++.|.+ .|+.+.+-+..
T Consensus 196 ~~ithvIrG~d~~~~t~~~~~l~~aLg~~-~p~~~H~p~l~~~-~g-~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 196 MKITHVIRGEDHISNTPKQILIYQALGWK-IPVFAHLPMILDE-DG-KKLSKRDG--ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CCCCEEEECchhhcCHHHHHHHHHHcCCC-CCeEEEEeeeecC-CC-ccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 37889999999999998889999999954 6888899998888 77 69999974 555543 57777777765
Q ss_pred -ccCCCCCCCCCcHHHHHHHhcc
Q 047474 266 -AYCPPKIVEGNPCLEYIKYIIF 287 (326)
Q Consensus 266 -A~c~~~~~~~n~vl~~~~~~if 287 (326)
-.+++...+....-+.+++|.+
T Consensus 271 lG~~~~~~~e~~~~~~~i~~f~l 293 (470)
T TIGR00464 271 LGWSPPDDQEFFSLEELIEIFSL 293 (470)
T ss_pred cCCCCCCccccCCHHHHHHhcCc
Confidence 2444544566666677777543
No 44
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.76 E-value=0.0015 Score=61.52 Aligned_cols=177 Identities=14% Similarity=0.068 Sum_probs=98.1
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhH
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~ 136 (326)
.|||.|||||.-...+++..-...|.+.++=|=|.- + .+. .......+.+++.-+|++.++. .+.||+-+
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD-----~-~R~---~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~ 77 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLD-----P-PRE---VPGAADDILRTLEAYGLHWDGE-VVYQSQRH 77 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCC-----C-CCC---ChHHHHHHHHHHHHcCCCCCCC-eeeeeCCH
Confidence 689999999954333344444556777766655532 1 121 1234455668888899999864 56888843
Q ss_pred HhhhhhhHHHHHHhhh----ccCHHHHHhhh-----hhh--cc--------------cc--cCcc-----chhhhh----
Q 047474 137 NARADEYWPLVMDIAR----RNKLPRIMRCC-----QIM--GR--------------SE--QDEL-----TAAQIL---- 180 (326)
Q Consensus 137 ~~~~~~~~~~~~~i~~----~~tl~~~~~~~-----~~~--~r--------------~~--~~~~-----~~~~~~---- 180 (326)
... ..+...+.+-+. .+|-.++.+.. .+. -| .. ...+ -.|.+.
T Consensus 78 ~~Y-~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~ 156 (272)
T TIGR03838 78 ALY-QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLA 156 (272)
T ss_pred HHH-HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCc
Confidence 222 122222221111 23333332210 000 00 00 0000 001111
Q ss_pred -------------hhhhhhh---hhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCC
Q 047474 181 -------------YPCMQCA---DIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKS 244 (326)
Q Consensus 181 -------------YP~lQaa---D~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS 244 (326)
||..+=| |=..++++.++-|.|...+--.=.-+.+.+|.. .|...|.|+|.+. +| +|+||+
T Consensus 157 ~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~-~P~y~H~pll~~~-~g-~kLSKR 233 (272)
T TIGR03838 157 AAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLP-PPRYLHLPLVVNA-DG-EKLSKQ 233 (272)
T ss_pred ccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCC-CCeEEechhhhCC-CC-Ceeecc
Confidence 2222221 112236789999999877666666777888864 6899999999998 77 699999
Q ss_pred CCC
Q 047474 245 DPS 247 (326)
Q Consensus 245 ~~~ 247 (326)
+..
T Consensus 234 ~~~ 236 (272)
T TIGR03838 234 NGA 236 (272)
T ss_pred CCc
Confidence 753
No 45
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.73 E-value=0.00036 Score=71.20 Aligned_cols=193 Identities=18% Similarity=0.173 Sum_probs=97.5
Q ss_pred EEEcccCCCCccchhhhhHHH--HHHHHH-HCCCeEEEE--EecceeeecCC---CCCCHHHHH-HHHHHHHHHHHHcCC
Q 047474 52 CYDGFEPSGRMHIAQGVMKAI--SVNKLT-SAGCKVKIW--VADWFAQLNNK---MGGDLKKIQ-TVGRYLIEIWIAVGM 122 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~~--~~~~lq-~aG~~v~il--IaD~~a~~~~~---~~~~~~~i~-~~~~~~~~~~~A~G~ 122 (326)
-|+|--|+|.+|+||+-...+ -+.++. ..|++|+.. +.||-..+..- .+..++.+. .....+.+.+..+|+
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 466889999999999322111 244544 479887553 44443222110 000122322 233556778899998
Q ss_pred CCCceEEEeCChhH-HhhhhhhHHHHHHhhhcc-C-HHHH-Hhhhhhh---cccccCccchhhhhhhhhhhhhhccc---
Q 047474 123 RTERVEFLWSSEEI-NARADEYWPLVMDIARRN-K-LPRI-MRCCQIM---GRSEQDELTAAQILYPCMQCADIFFL--- 192 (326)
Q Consensus 123 d~~k~~~~~~Sd~~-~~~~~~~~~~~~~i~~~~-t-l~~~-~~~~~~~---~r~~~~~~~~~~~~YP~lQaaD~~~l--- 192 (326)
..+ .+.+.|+.+ ...-...+..+.+-+-.. . -+.+ -....+. .+.=- -+=|..+|. +.|+.+.
T Consensus 196 ~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~--ksdG~~~Y~---t~Dia~~~~k 268 (507)
T PRK01611 196 HFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLI--KSDGTYTYF---TRDIAYHLYK 268 (507)
T ss_pred eee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEE--ECCCCccch---HHHHHHHHHH
Confidence 875 345555422 111122333332211000 0 0000 0000010 00000 011334443 2344443
Q ss_pred --cCc--EEEeccchhHHHHHHHHHHHHhcCcCC--cceeec--CcccCCCCCCccccCCCCCCceecCC
Q 047474 193 --KAD--ICQLGMDQRKVNVLAREYCDDIKRKNK--PIILSH--HMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 --~~d--~~~~G~DQ~~~~~lar~~~~k~~~~~~--p~~l~~--~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
+.| +-++|.||..|+.-....++.+|.... ...+|. .++.+- +| +|||||. ++.|++.|
T Consensus 269 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~-~g-~KMSkR~-Gn~i~l~d 335 (507)
T PRK01611 269 FERFDRVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGG-EG-VKMSTRA-GNVVTLDD 335 (507)
T ss_pred HhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECC-CC-CcccCCC-CceeEHHH
Confidence 134 448899999999999999999996421 113443 355443 55 6999998 68998877
No 46
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.68 E-value=0.00045 Score=63.62 Aligned_cols=156 Identities=16% Similarity=0.150 Sum_probs=89.9
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhH
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~ 136 (326)
.|||.|||||.....+.+..-...|.+.++=|=|. |+ ..........+.+++..+|++.+ .++.||+-+
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt-----D~----~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~ 77 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT-----NP----EKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYF 77 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-----CC----cccchHHHHHHHHHHHHcCCCCC--CceecccCH
Confidence 68999999995433333333344566665543332 11 11223445567788899999998 477899833
Q ss_pred HhhhhhhHHHHH---HhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhh---hhhhccccCcEEEeccchhHHHHHH
Q 047474 137 NARADEYWPLVM---DIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQ---CADIFFLKADICQLGMDQRKVNVLA 210 (326)
Q Consensus 137 ~~~~~~~~~~~~---~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQ---aaD~~~l~~d~~~~G~DQ~~~~~la 210 (326)
+.|...+. +-++... ..+. ++ ...+||..| +.|=...+++.++-|.|...+-..=
T Consensus 78 ----~~Y~~~~~~L~~~g~aY~----------~~~~-~~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q 138 (238)
T cd00807 78 ----DQLYEYAEQLIKKGKAYV----------HHRT-GD----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSY 138 (238)
T ss_pred ----HHHHHHHHHHHHcCCeec----------CCCC-CC----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHH
Confidence 22332222 2121111 0011 11 112244444 3444556899999999987766666
Q ss_pred HHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC
Q 047474 211 REYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246 (326)
Q Consensus 211 r~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~ 246 (326)
.-+.+.+|.. .|..++...+ +. +| .|+||++.
T Consensus 139 ~~l~~aLg~~-~P~~~~~~hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 139 YWLCDALRLY-RPHQWEFSRL-NL-TY-TVMSKRKL 170 (238)
T ss_pred HHHHHHcCCC-CCceeEEEEE-CC-CC-CCccCcCc
Confidence 7778888864 5753332233 55 66 69999984
No 47
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=97.52 E-value=0.0033 Score=63.57 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=47.1
Q ss_pred hhhhhccccCcEEEeccchh-HHHHHHHHHHHH-hcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHH
Q 047474 185 QCADIFFLKADICQLGMDQR-KVNVLAREYCDD-IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEA 257 (326)
Q Consensus 185 QaaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k-~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~ 257 (326)
|+..++--..|+-.||.|.. +|++--+-...- .|..+....+++-+|. + +| +|||||. +|.|.+.| +|+
T Consensus 211 m~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v~-~-~g-~KMSKS~-GN~i~~~dll~~~~~d 286 (465)
T TIGR00435 211 MNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLM-I-DN-EKMSKSL-GNFFTVRDVLKNYDPE 286 (465)
T ss_pred HHHHhcCCCceeeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEEE-e-cC-ccccccC-CCcCCHHHHHHHCCHH
Confidence 33444444589999999985 666644444333 3422222345555554 5 67 6999998 58887765 566
Q ss_pred HHHHHHHh
Q 047474 258 EVNVKIKK 265 (326)
Q Consensus 258 ~i~~KI~k 265 (326)
.++--+.+
T Consensus 287 alR~~ll~ 294 (465)
T TIGR00435 287 ILRYFLLS 294 (465)
T ss_pred HHHHHHHh
Confidence 66665554
No 48
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.51 E-value=0.0011 Score=66.14 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=50.4
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK 265 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k 265 (326)
++.+.|+=|.|...+--.=.-+.+-+|....|...|.|++.+. +| +|+||.+.. ..+.+ .|+.|.+-+..
T Consensus 189 mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~-~g-~KLSKR~~~--~~v~~~r~~G~~PeAi~n~l~~ 264 (433)
T PRK12410 189 YDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNE-EG-KKMSKRDNA--SSVKWLLEQGFLPSAIANYLIL 264 (433)
T ss_pred cCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCC-CC-CeeecccCh--hhHHHHHHCCCCHHHHHHHHHH
Confidence 3567899999987766666667788886533588999999998 77 699999853 33322 56666666654
No 49
>PLN02627 glutamyl-tRNA synthetase
Probab=97.29 E-value=0.012 Score=60.26 Aligned_cols=87 Identities=8% Similarity=-0.066 Sum_probs=58.1
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh-
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK- 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k- 265 (326)
+++.++-|.|...+---=.-+.+-+|.. .|...|.|+|.+- +| +|+||.++ ++.+.+ .|+.|.+-+..
T Consensus 249 gITHViRG~D~l~nTpkQi~ly~aLg~~-~P~f~Hlpli~~~-~g-~KLSKR~~--~~~v~~~r~~G~~PeAi~nyla~L 323 (535)
T PLN02627 249 GITHVIRAEEHLPNTLRQALIYKALGFP-MPRFAHVSLILAP-DR-SKLSKRHG--ATSVGQFREMGYLPDAMVNYLALL 323 (535)
T ss_pred CCcEEEechhhhcChHHHHHHHHHcCCC-CCeEEEccceeCC-CC-CccccccC--CccHHHHHHCCCCHHHHHHHHHHh
Confidence 5678999999876655556667778865 6999999999998 77 69999974 444432 67777777754
Q ss_pred ccCCCCCCCCCcHHHHHHH
Q 047474 266 AYCPPKIVEGNPCLEYIKY 284 (326)
Q Consensus 266 A~c~~~~~~~n~vl~~~~~ 284 (326)
-.+++...+....=++++.
T Consensus 324 Gws~~~~~e~~~~~eli~~ 342 (535)
T PLN02627 324 GWNDGTENEIFTLEELVEK 342 (535)
T ss_pred CCCCCCCCCcCCHHHHHHh
Confidence 2333322333444444444
No 50
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.22 E-value=0.015 Score=58.46 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=51.7
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh-
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK- 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k- 265 (326)
+.+.++-|.|...+--.=.-+.+-+|.. .|...|.|+|.+- +| +|+||.++. ..+.+ .|+.|.+-+..
T Consensus 196 ~ITHViRG~d~l~~t~~q~~l~~alg~~-~P~f~H~pli~~~-~g-~KLSKR~g~--~sv~~~r~~G~~Peai~n~la~l 270 (445)
T PRK12558 196 GITHIIRGEDHVTNTAVQIQIFEALGAK-PPVFAHLSLLTGA-DG-KGLSKRLGG--LSIRSLREDGIEPMAIASLLARL 270 (445)
T ss_pred CCCEEEechhhhhCCHHHHHHHHHhCCC-CCeEEEcccccCC-Cc-ccccccCCC--cCHHHHHHCCCCHHHHHHHHHHH
Confidence 4678999999876555555566777854 6899999999998 77 699999743 33322 57777777755
Q ss_pred ccCCC
Q 047474 266 AYCPP 270 (326)
Q Consensus 266 A~c~~ 270 (326)
..+++
T Consensus 271 G~s~~ 275 (445)
T PRK12558 271 GTSDP 275 (445)
T ss_pred cCCCC
Confidence 34433
No 51
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.14 E-value=0.0088 Score=57.42 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=43.7
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCc
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSA 249 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~ 249 (326)
.+++.++-|.|...+--.-.-+.+.+|.. .|...|.|++.+. +| +|+||++...+
T Consensus 198 ~gITHViRG~D~l~~t~~Q~~L~~~Lg~~-~P~~~H~pl~l~~-~g-~kLSKR~~~~~ 252 (314)
T PF00749_consen 198 MGITHVIRGEDLLSSTPRQILLYEALGWP-PPPYAHLPLILNE-DG-KKLSKRKGAKS 252 (314)
T ss_dssp TT-SEEEEEGGGTTCHHHHHHHHHHCTSS-S-EEEEEEEEEET-TS-SBSSTTCSHHB
T ss_pred cccCeEEEccccccccHHHHHHHHHhCCC-CcceEeeeeeecC-CC-cEechhhcccc
Confidence 46889999999888777777888999975 4888999999998 77 69999985433
No 52
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0098 Score=60.06 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=45.2
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecC
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYME 253 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~ 253 (326)
+.+.++-|.|+..+=..=+-+.+-+|.. .|...|.|+|.+- +| +||||++. ++.+.
T Consensus 206 gITHviRG~d~~~nt~~q~~l~~~lg~~-~P~~~H~~li~~~-~g-~kLSKr~~--~~~~~ 261 (472)
T COG0008 206 GITHVLRGEDHLDNTPRQIWLYEALGWP-PPVYAHLPLLLNE-DG-KKLSKRKG--AVSIG 261 (472)
T ss_pred CCceEEechhhccCCHHHHHHHHHcCCC-CCcEEEeeeeecC-CC-CeecCccC--ccccc
Confidence 5779999999988777777788889965 6999999999994 66 69999985 44444
No 53
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=96.98 E-value=0.011 Score=60.17 Aligned_cols=50 Identities=8% Similarity=-0.048 Sum_probs=39.2
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
.+.+.++-|.|...+-..-.-+.+.+|.. .|.. +++...++ .| .||||++
T Consensus 202 ~gITHviRg~E~~~~t~~q~~l~~aLg~~-~P~~-~~f~rln~-~~-~kLSKR~ 251 (523)
T PLN03233 202 EGVTHALRTTEYDDRDAQFFWIQKALGLR-RPRI-HAFARMNF-MN-TVLSKRK 251 (523)
T ss_pred cCCCeEEechhhhcCCHHHHHHHHHhCCC-CCee-eeeEEECC-CC-CcccccC
Confidence 36789999999888777777788888864 6765 55777777 56 5999996
No 54
>PLN02859 glutamine-tRNA ligase
Probab=96.85 E-value=0.041 Score=58.48 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=40.0
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~ 246 (326)
+.+.++.|.|...+-..=.-++..++. +.|...+.+ ..++ +| .||||+..
T Consensus 456 gITHvLRg~E~~~~~~~y~wl~~aLg~-~~P~~~~f~-rLn~-~~-t~LSKRkl 505 (788)
T PLN02859 456 NITHSLCTLEFETRRASYYWLLDSLGL-YQPYVWEYS-RLNV-TN-TVMSKRKL 505 (788)
T ss_pred CCceEeechhhhcCCHHHHHHHHHcCC-CCCcEEeee-eECC-CC-CcccCcCc
Confidence 678999999988777777778888885 478888888 4477 67 59999974
No 55
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=96.83 E-value=0.019 Score=58.28 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=43.7
Q ss_pred hhhhhhccccCcEEEeccchh-HHHHHHHHHHHHhcCc-CCcceeecCcccCCCCCCccccCCCCCCceecCC------C
Q 047474 184 MQCADIFFLKADICQLGMDQR-KVNVLAREYCDDIKRK-NKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------E 255 (326)
Q Consensus 184 lQaaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k~~~~-~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~ 255 (326)
-|+...+--..||..||.|-. +|++--+-...-.... ..-+.+|+-+| .. +| +|||||. +|.|.+.| +
T Consensus 224 aMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l-~~-~g-~KMSKSl-GN~itl~dll~~g~~ 299 (490)
T PRK14536 224 AMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFL-LM-NK-GKMSKSA-GQFLTLSSLQEKGFQ 299 (490)
T ss_pred HHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEE-ee-cC-ccccccC-CCcccHHHHHhcCCC
Confidence 334444444579999999954 7776443333333222 11134555444 34 66 6999998 68888743 4
Q ss_pred HHHHHHHH
Q 047474 256 EAEVNVKI 263 (326)
Q Consensus 256 ~~~i~~KI 263 (326)
|+.++--+
T Consensus 300 ~~alR~~l 307 (490)
T PRK14536 300 PLDYRFFL 307 (490)
T ss_pred HHHHHHHH
Confidence 44555444
No 56
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=96.80 E-value=0.086 Score=50.20 Aligned_cols=197 Identities=17% Similarity=0.128 Sum_probs=88.4
Q ss_pred EEEcccCCCCccchhh---hhHHHHHHHHHHCCCeEEEE--EecceeeecC---CCCCCHHHH-HHHHHHHHHHHHHcCC
Q 047474 52 CYDGFEPSGRMHIAQG---VMKAISVNKLTSAGCKVKIW--VADWFAQLNN---KMGGDLKKI-QTVGRYLIEIWIAVGM 122 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~---~~~~~~~~~lq~aG~~v~il--IaD~~a~~~~---~~~~~~~~i-~~~~~~~~~~~~A~G~ 122 (326)
-.||--+=..+||||+ +..-+..+.|...|++|... |.|.---+-+ ..+.++.++ +.+...+.+++.++|+
T Consensus 12 Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~Lnv 91 (300)
T PF01406_consen 12 YVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKALNV 91 (300)
T ss_dssp EEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-
T ss_pred EcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3456666679999993 22222233455689987655 3343111100 112233333 3445566678889998
Q ss_pred CCCceEEEeCChhHHhhhhhhHHHHH---------------Hhhh--------ccCHHHHHhhhhhh----cccccC---
Q 047474 123 RTERVEFLWSSEEINARADEYWPLVM---------------DIAR--------RNKLPRIMRCCQIM----GRSEQD--- 172 (326)
Q Consensus 123 d~~k~~~~~~Sd~~~~~~~~~~~~~~---------------~i~~--------~~tl~~~~~~~~~~----~r~~~~--- 172 (326)
.+.. .+-..|+.+++.- .+...++ ++.+ ...++++......- +|...|
T Consensus 92 ~~p~-~~prate~i~~ii-~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~DFaL 169 (300)
T PF01406_consen 92 LPPD-HYPRATEHIPEII-ELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPRDFAL 169 (300)
T ss_dssp ---S-EEEEGGGGHHHHH-HHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT-EEE
T ss_pred CCCc-cccchhccHHHHH-HHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCcceee
Confidence 7653 4566677565442 2333332 1111 12333332221110 010000
Q ss_pred --ccchhhh--------------hhhhhhhhhhccccCcEEEeccchh-HHHHHHHHHHHHhcCc-CCcceeecCcccCC
Q 047474 173 --ELTAAQI--------------LYPCMQCADIFFLKADICQLGMDQR-KVNVLAREYCDDIKRK-NKPIILSHHMLPGL 234 (326)
Q Consensus 173 --~~~~~~~--------------~YP~lQaaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k~~~~-~~p~~l~~~~lp~L 234 (326)
....++. +=...|+...+-...||--||.|-. ||++--+-.++-.... ....-+|+.+|.-
T Consensus 170 WK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~- 248 (300)
T PF01406_consen 170 WKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNV- 248 (300)
T ss_dssp EEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEE-
T ss_pred eecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhh-
Confidence 0011221 2224455555555689999999976 8888666666655432 1113466666644
Q ss_pred CCCCccccCCCCCCceecCC
Q 047474 235 QQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 235 ~~g~~KMSKS~~~s~I~L~D 254 (326)
+| +|||||. +|.|.+.|
T Consensus 249 -~g-~KMSKSl-gN~~~i~d 265 (300)
T PF01406_consen 249 -DG-EKMSKSL-GNFITIRD 265 (300)
T ss_dssp -TT-CE--TTT-T---BHHH
T ss_pred -cC-ccccccC-CCEEEHHH
Confidence 56 7999998 67777643
No 57
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.76 E-value=0.016 Score=59.93 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=40.9
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~ 246 (326)
.+++.++-|.|...+-..=.-+.+.+|.. .|...+.|+ .++ +| .||||+..
T Consensus 244 ~gITHvlRg~E~l~~tp~q~~L~~aLg~~-~P~~~h~~r-Ln~-~g-~kLSKRkl 294 (601)
T PTZ00402 244 EGVTHALRTNEYHDRNDQYYWFCDALGIR-KPIVEDFSR-LNM-EY-SVMSKRKL 294 (601)
T ss_pred cCCceEeechhhhhCcHHHHHHHHHhCCC-CceEEEEee-EcC-CC-CcccccCC
Confidence 36789999999888777777788888864 688888886 477 67 69999974
No 58
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=96.53 E-value=0.028 Score=58.93 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=47.4
Q ss_pred hhhhhhhccccCcEEEeccchh-HHHHHHHHHHHHhcCc-----------------CCcceeecCcccCCCCCCccccCC
Q 047474 183 CMQCADIFFLKADICQLGMDQR-KVNVLAREYCDDIKRK-----------------NKPIILSHHMLPGLQQGQEKMSKS 244 (326)
Q Consensus 183 ~lQaaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k~~~~-----------------~~p~~l~~~~lp~L~~g~~KMSKS 244 (326)
..|+...+--..||--||.|-. ||++==+-...-.... .-..-+|+.+|. + +| +|||||
T Consensus 436 SAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~-v-dG-eKMSKS 512 (699)
T PRK14535 436 SAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIR-V-DG-EKMSKS 512 (699)
T ss_pred HHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEe-e-CC-CccCCC
Confidence 3444444444578999999954 7776432222222111 011357777776 6 77 699999
Q ss_pred CCCCceecCC-----CHHHHHHHHHh
Q 047474 245 DPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 245 ~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
. +|.|.+.| +|+.++--+..
T Consensus 513 L-GN~it~~dlLe~ygpdalRl~lLs 537 (699)
T PRK14535 513 L-GNFFTIREVLKQYDPEVVRFFILR 537 (699)
T ss_pred C-CCcCCHHHHHHhCCHHHHHHHHHc
Confidence 8 57776655 56666665554
No 59
>PLN02907 glutamate-tRNA ligase
Probab=96.39 E-value=0.035 Score=59.04 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=37.3
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
.+.+.++-|.|...+-..-.-+.+.+|.+ .|.......| ++ +| .||||++
T Consensus 404 ~gIThvlRg~e~~~~t~~q~~l~~~lg~~-~p~~~~f~~l-~~-~~-~~lSKR~ 453 (722)
T PLN02907 404 EGVTHALRSSEYHDRNAQYYRILEDMGLR-KVHIWEFSRL-NF-VY-TLLSKRK 453 (722)
T ss_pred CCCceEeecHhhhhChHHHHHHHHHcCCC-CCeeEEEEEE-cC-CC-ccccccc
Confidence 36789999999988887778888888854 5654444443 55 56 5999997
No 60
>PLN02946 cysteine-tRNA ligase
Probab=96.37 E-value=0.04 Score=56.83 Aligned_cols=67 Identities=19% Similarity=0.067 Sum_probs=42.1
Q ss_pred hhhhhhhccccCcEEEeccchh-HHHHHHHHHHHH-hcCcCCcceeecCcccCCCCCCccccCCCCCCceecC
Q 047474 183 CMQCADIFFLKADICQLGMDQR-KVNVLAREYCDD-IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYME 253 (326)
Q Consensus 183 ~lQaaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k-~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~ 253 (326)
..|+...+--..||--||.|-. ||++--+-...- .+...-..-+|+.+|. + +| +|||||. +|.|.+.
T Consensus 267 SaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~-~-~G-~KMSKSl-GN~itl~ 335 (557)
T PLN02946 267 SAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVT-V-DS-EKMSKSL-GNFFTIR 335 (557)
T ss_pred HHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEE-e-CC-CCcCCcC-CCcCCHH
Confidence 4555555555679999999954 776644333333 2321111347777777 6 77 6999998 5777663
No 61
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.28 E-value=0.092 Score=53.99 Aligned_cols=52 Identities=15% Similarity=0.012 Sum_probs=38.3
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~ 246 (326)
.+.+.++.|.|...+-..-.-+.+.+|..+.|.......| ++ +| .||||++.
T Consensus 225 ~gITHvlRg~E~~~~t~~~~~i~~alg~~~~P~~~~F~rl-n~-~~-~~LSKRkl 276 (554)
T PRK05347 225 EGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPRQYEFSRL-NL-TY-TVMSKRKL 276 (554)
T ss_pred cCCceEEeccccccChHHHHHHHHHcCCCCCCceEEEEEE-CC-CC-Cccccccc
Confidence 3678999999998887777788888975445755444334 56 66 59999984
No 62
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=96.03 E-value=0.18 Score=51.60 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=58.4
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCce-----------------ecCC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI-----------------YMED 254 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I-----------------~L~D 254 (326)
.+.+.++.|.|...+-.+-.-+.+.++....|....... .++ +| .||||++....| .+-+
T Consensus 196 ~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F~r-ln~-~~-~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrr 272 (522)
T TIGR00440 196 ENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEFSR-LNL-EG-TVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRR 272 (522)
T ss_pred CCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEEEE-ECC-CC-CCcccccchhccccCcccCCCCCccccHHHHHH
Confidence 367899999998888777777777776432464333222 345 66 599999743211 1111
Q ss_pred ---CHHHHHHHHHhc-cCCCCC-CCCCcHHHHHHHhccCCC
Q 047474 255 ---EEAEVNVKIKKA-YCPPKI-VEGNPCLEYIKYIIFPWD 290 (326)
Q Consensus 255 ---~~~~i~~KI~kA-~c~~~~-~~~n~vl~~~~~~ifp~~ 290 (326)
.|+.|++-+... .+.... .+...+.++.+.++.+..
T Consensus 273 rG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~~~r~f~~~~~ 313 (522)
T TIGR00440 273 RGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENA 313 (522)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCceehhhHHHHHHHhhhhcC
Confidence 577777777662 333222 355567777777776644
No 63
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.91 E-value=0.13 Score=53.15 Aligned_cols=51 Identities=14% Similarity=-0.022 Sum_probs=34.7
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
.+++.++-|.|...+-.--.-+..-++.. .|...+.|++..- +| .|+||+.
T Consensus 284 ~gITHviRg~E~~~nT~rq~yl~~~lg~~-~P~~~h~~~l~~~-~~-~kLskk~ 334 (560)
T TIGR00463 284 LGVTHVLRGKDHIDNERKQQYIYMYFGWE-LPEFIHWGRLKIN-DV-RTLSTSS 334 (560)
T ss_pred CCCCeEEechhhhcCCHHHHHHHHHcCCC-CCeEEEEcceecC-CC-cEecchh
Confidence 36789999999766333333344555643 5788888887775 55 5999876
No 64
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=95.82 E-value=0.12 Score=52.55 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=38.8
Q ss_pred hhhhccccCcEEEeccchh-HHHHHHHHHHHHh-cCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 186 CADIFFLKADICQLGMDQR-KVNVLAREYCDDI-KRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 186 aaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k~-~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
+...+--..|+..||.|-. ||++-=+-..... |....-.-+|+-+|. + +| +|||||. +|.|.+.|
T Consensus 226 ~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~-~-~g-~KMSKSl-GN~i~l~d 292 (481)
T PRK14534 226 NLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLI-M-EY-EKMSKSN-NNFITIKD 292 (481)
T ss_pred HHHHcCCcceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEEE-e-cC-ceecccC-CCcccHHH
Confidence 3333333469999999965 6766544444433 322111345555553 4 56 6999998 58888743
No 65
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=95.74 E-value=0.011 Score=56.45 Aligned_cols=59 Identities=25% Similarity=0.189 Sum_probs=39.0
Q ss_pred cCcEEEeccchh-HHHHHHHHHHHHhcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 193 KADICQLGMDQR-KVNVLAREYCDDIKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 ~~d~~~~G~DQ~-~~~~lar~~~~k~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
..|+.++|.||. +|+..-.-.+.-++....| .++.+.++..- +| +|||||. +|.|++.|
T Consensus 226 ~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g-~KmSKS~-gn~v~~~d 286 (312)
T cd00668 226 PADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDE-GG-QKMSKSK-GNVIDPSD 286 (312)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcC-CC-ccccccC-CCcCCHHH
Confidence 468999999998 6665554455445533112 34455777644 55 7999998 68998854
No 66
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=94.41 E-value=0.022 Score=54.59 Aligned_cols=58 Identities=22% Similarity=0.254 Sum_probs=35.9
Q ss_pred cCcEEEeccchhHHHH----HHHHHHHHhcC---cCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 193 KADICQLGMDQRKVNV----LAREYCDDIKR---KNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~----lar~~~~k~~~---~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
.+|+.++|.||..++. .-...+...+. .....++.+.+|. + +| +|||||. +++|++.|
T Consensus 224 p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~-~g-~KmSkS~-Gn~v~~~d 288 (314)
T cd00812 224 PVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-L-EG-EKMSKSK-GNVVTPDE 288 (314)
T ss_pred CCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-c-Cc-cccCCcC-CCCCCHHH
Confidence 4789999999976553 23333333431 1111234455665 5 66 6999998 68998854
No 67
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=94.40 E-value=0.031 Score=55.04 Aligned_cols=59 Identities=20% Similarity=0.061 Sum_probs=37.4
Q ss_pred cCcEEEeccchhHHHHHH-HHHHHHh-cCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 193 KADICQLGMDQRKVNVLA-REYCDDI-KRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~la-r~~~~k~-~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
.+|+.++|.||...+-.. .-.+..+ +..+.-.++.+.++.++ +| +|||||. +|.|.+.|
T Consensus 296 p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~-~g-~KMSKS~-Gn~v~~~d 356 (382)
T cd00817 296 PTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDE-DG-RKMSKSL-GNVIDPLD 356 (382)
T ss_pred CCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECC-CC-CCccccC-CCCCCHHH
Confidence 479999999997444333 2222223 32211245667888777 67 6999998 68888744
No 68
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=94.22 E-value=0.4 Score=49.50 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=54.2
Q ss_pred CHHHHHHHHhc-CCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHH
Q 047474 36 QEDELLNLLTK-KPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLI 114 (326)
Q Consensus 36 ~~~eL~~lL~~-~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~ 114 (326)
+++.+++.++. +++...=..=.|||.|||||.-...+.+...+..|.+.++=+=|. |+. .........+.
T Consensus 37 ~~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT-----Dp~----r~~~e~~~~I~ 107 (574)
T PTZ00437 37 TPELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT-----NPE----TEEQVYIDAIM 107 (574)
T ss_pred CHHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-----Ccc----ccChHHHHHHH
Confidence 46777776663 334333344478899999995433333433445676665543332 221 12344556677
Q ss_pred HHHHHcCCCCCceEEEeCChhH
Q 047474 115 EIWIAVGMRTERVEFLWSSEEI 136 (326)
Q Consensus 115 ~~~~A~G~d~~k~~~~~~Sd~~ 136 (326)
+++.-+|+++++ ++.||+.+
T Consensus 108 ~dL~wLGi~~D~--~~~qS~y~ 127 (574)
T PTZ00437 108 EMVKWMGWKPDW--VTFSSDYF 127 (574)
T ss_pred HHHHHcCCCCCC--CCcCchhH
Confidence 888999999985 45889844
No 69
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=94.05 E-value=0.052 Score=52.56 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=36.1
Q ss_pred cCcEEEeccchhH---HHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 193 KADICQLGMDQRK---VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 ~~d~~~~G~DQ~~---~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
.+|+.+.|.|+.. |..+-.-++ -.+..+-..++.+.++... +| +|||||. +|.|++.|
T Consensus 252 p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~-~g-~KmSKS~-gn~i~~~~ 312 (338)
T cd00818 252 PADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDE-DG-RKMSKSL-GNYVDPQE 312 (338)
T ss_pred CCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECC-CC-CCCCCCC-CCcCCHHH
Confidence 4688899999964 333332222 2222211134567777666 67 6999998 68998854
No 70
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=93.73 E-value=0.25 Score=39.26 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=41.3
Q ss_pred EEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 047474 52 CYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMR 123 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d 123 (326)
+++|-.| +.+|+||..+ +.+..+.+-.+++.++|.++.... .+...++++.+...+.+..+|.+
T Consensus 2 ~~~~G~F-dp~H~GH~~l----~~~a~~~~d~~i~~i~~~~~~~~~---~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL----ICRAKGIADQCVVRIDDNPPVKVW---QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EEeCCCC-CCCCHHHHHH----HHHHHHhCCcEEEEEcCCCccccc---CChHHHHHHHHHHHHHHHHHHhh
Confidence 4566667 8999999543 222333334799999999988642 25666666666665555555543
No 71
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=93.72 E-value=0.048 Score=56.90 Aligned_cols=60 Identities=23% Similarity=0.185 Sum_probs=34.9
Q ss_pred ccCcEEEeccchhHHHH-HHHHHHHHhcC-cCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 192 LKADICQLGMDQRKVNV-LAREYCDDIKR-KNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~-lar~~~~k~~~-~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
+.+|+.+.|.||....- ...-+.-.+.. .+-+.++.+.++... +| +|||||. +|.|.+.|
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~-~G-~KMSKS~-GNvi~p~~ 574 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDE-DG-RKMSKSK-GNVIDPED 574 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEET-TS-SB-BTTT-TB--BHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeeccccccc-ce-eecccCC-CcccCHHH
Confidence 46899999999975443 33333333332 222346778899988 77 7999998 57776533
No 72
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.67 E-value=0.35 Score=49.98 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=57.4
Q ss_pred EEEcc-cCCCCccchhhhhH--HHHHHHHHH-CCCeEEEEEecc-eeeec----CCCCCCHHH-HHHHHHHHHHHHHHcC
Q 047474 52 CYDGF-EPSGRMHIAQGVMK--AISVNKLTS-AGCKVKIWVADW-FAQLN----NKMGGDLKK-IQTVGRYLIEIWIAVG 121 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~--~~~~~~lq~-aG~~v~ilIaD~-~a~~~----~~~~~~~~~-i~~~~~~~~~~~~A~G 121 (326)
|-|.+ -|.|.+||||.... .-.+.++++ .|++|+++-|+. |..-- .+-|.++++ +.++....+++|.+++
T Consensus 9 VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~ 88 (558)
T COG0143 9 VTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALN 88 (558)
T ss_pred EecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 55555 78899999995422 114777887 699987776543 33210 112344443 4667778889999999
Q ss_pred CCCCceEEEeCCh-hHHhhhhhhHHHHH
Q 047474 122 MRTERVEFLWSSE-EINARADEYWPLVM 148 (326)
Q Consensus 122 ~d~~k~~~~~~Sd-~~~~~~~~~~~~~~ 148 (326)
++-|. |+...+ ...+....+|..+.
T Consensus 89 IsfD~--F~rTt~~~h~~~vq~~f~~L~ 114 (558)
T COG0143 89 ISFDN--FIRTTSPEHKELVQEFFLKLY 114 (558)
T ss_pred Ccccc--cccCCCHHHHHHHHHHHHHHH
Confidence 88774 444433 22333455665553
No 73
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=93.63 E-value=0.06 Score=58.87 Aligned_cols=70 Identities=23% Similarity=0.173 Sum_probs=45.0
Q ss_pred cccCcEEEeccchh---HHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHH
Q 047474 191 FLKADICQLGMDQR---KVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVK 262 (326)
Q Consensus 191 ~l~~d~~~~G~DQ~---~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~K 262 (326)
.+.+|+.+.|.||. -|..+-..++- .+..+--.++.|.++.+. +| +|||||. +|.|...| .++.+|--
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~-~G-~KMSKSl-GNvIdP~~ii~~yGaDalR~~ 618 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDG-KG-RKMSKSL-GNVIDPQDVIKKYGADILRLW 618 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECC-CC-CCCCCCC-CCcCCHHHHHHhcChHHHHHH
Confidence 34589999999996 33344444443 443321236778888887 67 6999998 57776544 45555555
Q ss_pred HH
Q 047474 263 IK 264 (326)
Q Consensus 263 I~ 264 (326)
+.
T Consensus 619 ll 620 (912)
T PRK05743 619 VA 620 (912)
T ss_pred HH
Confidence 54
No 74
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=93.26 E-value=0.13 Score=56.05 Aligned_cols=71 Identities=20% Similarity=0.171 Sum_probs=45.1
Q ss_pred ccCcEEEeccchhH---HHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRK---VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~---~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
+.+|+.+.|.||.. +..+-.-++ -.+..+-..++.+.++... +| +|||||. +|.|+..| .++.+|--+
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~-~~~~~P~k~v~~hG~vl~~-~G-~KMSKSk-GNvI~p~d~i~~yGaDalR~~l 638 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTA-LFGQAPYKNVITHGFTLDE-KG-RKMSKSL-GNVVDPLKVINKYGADILRLYV 638 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHH-HcCCCChHhhEecceEECC-CC-CCcCCCC-CCCCCHHHHHHHcCHHHHHHHH
Confidence 35799999999965 222222222 1243211135667777766 67 6999998 68888766 567777766
Q ss_pred Hhc
Q 047474 264 KKA 266 (326)
Q Consensus 264 ~kA 266 (326)
.++
T Consensus 639 l~~ 641 (861)
T TIGR00392 639 ASS 641 (861)
T ss_pred HhC
Confidence 655
No 75
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.20 E-value=0.4 Score=47.46 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=48.4
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe-cceeeec----CCCCCCHH-HHHHHHHHHHHHHHHcCCCCCce
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA-DWFAQLN----NKMGGDLK-KIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa-D~~a~~~----~~~~~~~~-~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
-|.|.|||||...... .+.++++ .|++|.++-| |-|..-. .+-|.+++ -+.++...+++.+.++|++.+.
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~- 87 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR- 87 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE-
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc-
Confidence 5889999999542221 3555554 6998766543 5554311 11234444 3455677788899999999984
Q ss_pred EEEeCCh-hHHhhhhhhHHHHH
Q 047474 128 EFLWSSE-EINARADEYWPLVM 148 (326)
Q Consensus 128 ~~~~~Sd-~~~~~~~~~~~~~~ 148 (326)
|+..++ ...+....+|..+.
T Consensus 88 -F~rTt~~~h~~~v~~i~~~L~ 108 (391)
T PF09334_consen 88 -FIRTTDDRHKEFVQEIFKRLY 108 (391)
T ss_dssp -EEETTSHHHHHHHHHHHHHHH
T ss_pred -eeCCCCHHHHHHHHHHHHHHH
Confidence 666554 22233455666653
No 76
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=92.77 E-value=0.35 Score=51.20 Aligned_cols=76 Identities=14% Similarity=0.062 Sum_probs=47.7
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecce-e--eec--CCCCCCHH-HHHHHHHHHHHHHHHc
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWF-A--QLN--NKMGGDLK-KIQTVGRYLIEIWIAV 120 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~-a--~~~--~~~~~~~~-~i~~~~~~~~~~~~A~ 120 (326)
.|.+++ -|+|.+||||...... .+.++++ .|++|.++.+..+ . ... .+.|.++. -..+++..+.+.+.++
T Consensus 5 ~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l 84 (673)
T PRK00133 5 LVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGF 84 (673)
T ss_pred EEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 467777 6999999999543221 3556655 6999988877443 1 000 01123333 3455667778889999
Q ss_pred CCCCCc
Q 047474 121 GMRTER 126 (326)
Q Consensus 121 G~d~~k 126 (326)
|++.+.
T Consensus 85 ~i~~d~ 90 (673)
T PRK00133 85 GISFDN 90 (673)
T ss_pred CCCCCC
Confidence 998873
No 77
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=92.76 E-value=0.066 Score=54.40 Aligned_cols=68 Identities=26% Similarity=0.293 Sum_probs=43.1
Q ss_pred cCcEEEeccchhHHHHHHH-HHHHHhcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 193 KADICQLGMDQRKVNVLAR-EYCDDIKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar-~~~~k~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
..|+.++|.||..++...- -++...+.. .| .++++.+|. + +| +|||||. +|.|++.| .++.+|--+.+
T Consensus 254 ~~D~~~~G~D~~~~h~~~~~a~~~a~~~~-~p~~~~~~g~v~-~-~G-~KMSKS~-GN~i~~~dll~~~g~DalR~~ll~ 328 (511)
T PRK11893 254 PADVHLIGKDILRFHAVYWPAFLMAAGLP-LPKRVFAHGFLT-L-DG-EKMSKSL-GNVIDPFDLVDEYGVDAVRYFLLR 328 (511)
T ss_pred CCcceEecccccccchhHHHHHHHhCCCC-CCCEEEeeccEE-E-CC-eeecccC-CcEEcHHHHHHHcCcHHHHHHHHh
Confidence 4689999999987533321 112222322 23 456677775 5 67 6999998 68998866 56666655544
No 78
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=92.31 E-value=1 Score=48.34 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=37.0
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCc-CCcceeecCcccCCCCCCccccCCC
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRK-NKPIILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~-~~p~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
+.+.++.|.|...+-..=.-+.+.++.. ++|.......|+-. + .||||+.
T Consensus 228 gITHvlRg~E~~~~~~~~~~l~~~l~~~~~~P~~~~f~rl~l~--~-~~lSKRk 278 (771)
T PRK14703 228 GVTHSICTLEFENNRAIYDWVLDHLGPWPPRPRQYEFARLALG--Y-TVMSKRK 278 (771)
T ss_pred CCcEEEecHhhhhccHHHHHHHHHhCCCCCCcceeEEEEeccC--C-CcccccC
Confidence 6789999999988888888888989643 35765554444443 4 5999997
No 79
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=91.65 E-value=0.16 Score=54.71 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=41.9
Q ss_pred cCcEEEeccchhHHH---HHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 193 KADICQLGMDQRKVN---VLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~---~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
-+|+.+.|.||.... ++....+- .+..+-..++.+.++... +| +|||||. +|.|.+.| .++.+|--+.
T Consensus 486 P~d~~~~G~Di~~~w~~~~l~~~~~~-~~~~Pf~~v~~hg~v~~~-~G-~KMSKS~-GN~i~p~~~i~~yg~D~lR~~l~ 561 (800)
T PRK13208 486 PMDLRPQGHDIIRTWLFYTILRAYLL-TGKLPWKNIMISGMVLDP-DG-KKMSKSK-GNVVTPEELLEKYGADAVRYWAA 561 (800)
T ss_pred CceEEEeecchhhhHHHHHHHHHHHh-cCCCCcceEEEeeEEECC-CC-CCCCCCC-CCCCCHHHHHHHcCccHHHHHHh
Confidence 368899999997532 23222221 232211135667888877 67 6999998 68888755 4555555554
No 80
>PLN02843 isoleucyl-tRNA synthetase
Probab=91.32 E-value=0.18 Score=55.52 Aligned_cols=58 Identities=24% Similarity=0.220 Sum_probs=36.1
Q ss_pred cccCcEEEeccchhH---HHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceec
Q 047474 191 FLKADICQLGMDQRK---VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYM 252 (326)
Q Consensus 191 ~l~~d~~~~G~DQ~~---~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L 252 (326)
...+|+.+.|.||.. +-++..-++ -.+..+--.++.|.++..- +| +|||||. +|.|..
T Consensus 562 ~~PaDl~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~-~G-~KMSKSl-GNvI~p 622 (974)
T PLN02843 562 SYPADLYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDE-KG-FKMSKSL-GNVVDP 622 (974)
T ss_pred CCCceeeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECC-CC-CCcCCCC-CCcCCH
Confidence 345899999999976 222222222 1332211135667888887 67 6999998 577754
No 81
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=91.22 E-value=0.62 Score=48.06 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=45.4
Q ss_pred CeEEEcccCC--CCccchhhhhH-H--HHHHHHHH-CCCeEEEEEe-cceeeec----CCCCCCHHH-HHHHHHHHHHHH
Q 047474 50 PICYDGFEPS--GRMHIAQGVMK-A--ISVNKLTS-AGCKVKIWVA-DWFAQLN----NKMGGDLKK-IQTVGRYLIEIW 117 (326)
Q Consensus 50 ~~iy~G~~PT--G~lHLG~~~~~-~--~~~~~lq~-aG~~v~ilIa-D~~a~~~----~~~~~~~~~-i~~~~~~~~~~~ 117 (326)
+.+.+.-=|+ |.+||||+... . -.+.++++ .|++|.++.+ |.|..-. .+.|.++.+ .++++..+.+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3445555555 89999994422 1 13556655 5888877654 2221100 112344433 355667778899
Q ss_pred HHcCCCCCc
Q 047474 118 IAVGMRTER 126 (326)
Q Consensus 118 ~A~G~d~~k 126 (326)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999874
No 82
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=91.18 E-value=0.18 Score=55.59 Aligned_cols=70 Identities=24% Similarity=0.251 Sum_probs=43.3
Q ss_pred ccCcEEEeccchhH---HHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRK---VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~---~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
..+|+.+.|.||.. |-.+..-++ -.+..+--.++.|.++... +| +|||||. +|.|...| .++.+|--+
T Consensus 582 ~PaD~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~-~G-~KMSKSl-GNvIdP~~ii~~yGaD~lRl~l 657 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDE-KG-EKMSKSL-GNTVSPQDVIKQSGADILRLWV 657 (961)
T ss_pred CCceEEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECC-CC-CCccCCC-CCcCCHHHHHHhcCHHHHHHHH
Confidence 45889999999974 111111111 1122111146778888887 67 6999998 68887655 566666666
Q ss_pred Hh
Q 047474 264 KK 265 (326)
Q Consensus 264 ~k 265 (326)
..
T Consensus 658 ls 659 (961)
T PRK13804 658 AS 659 (961)
T ss_pred Hh
Confidence 54
No 83
>PLN02224 methionine-tRNA ligase
Probab=90.70 E-value=2 Score=45.19 Aligned_cols=75 Identities=11% Similarity=0.186 Sum_probs=46.7
Q ss_pred EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe-cceee--ec--CCCCCCH-HHHHHHHHHHHHHHHHcC
Q 047474 52 CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA-DWFAQ--LN--NKMGGDL-KKIQTVGRYLIEIWIAVG 121 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa-D~~a~--~~--~~~~~~~-~~i~~~~~~~~~~~~A~G 121 (326)
+-++. -|+|.+||||...... .+.++++ .|++|.++-+ |-|.. .. ...|.++ +-+++++..+.+.+.++|
T Consensus 73 ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~ 152 (616)
T PLN02224 73 LTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLD 152 (616)
T ss_pred EeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcC
Confidence 66666 7789999999543221 3556665 5988877754 33431 00 0112333 445666777788899999
Q ss_pred CCCCc
Q 047474 122 MRTER 126 (326)
Q Consensus 122 ~d~~k 126 (326)
++++.
T Consensus 153 I~~D~ 157 (616)
T PLN02224 153 IAYDK 157 (616)
T ss_pred CCCCc
Confidence 99873
No 84
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=90.57 E-value=0.2 Score=55.67 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=47.3
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCc-CCc--ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRK-NKP--IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~-~~p--~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
+.+|+.+.|.||.. +=.++-++..+... ..| .++.|.+|..- +| +|||||. +|.|+..| .+|.+|--+
T Consensus 490 ~P~d~~~~G~Dii~-~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~-~G-~KMSKSk-GNvIdP~dvIe~yGaDalR~~L 565 (1052)
T PRK14900 490 YPTSVMETGHDIIF-FWVARMMMMGLHFMGEVPFRTVYLHPMVRDE-KG-QKMSKTK-GNVIDPLVITEQYGADALRFTL 565 (1052)
T ss_pred CCchhhcccccHHh-HHHHHHHHHHHHhcCCCccceeEecccEECC-CC-CCccCCC-CCCCCHHHHHHHhCcHHHHHHH
Confidence 45789999999964 34445555443210 124 36778888887 67 6999998 68898776 567777666
Q ss_pred Hh
Q 047474 264 KK 265 (326)
Q Consensus 264 ~k 265 (326)
..
T Consensus 566 ~~ 567 (1052)
T PRK14900 566 AA 567 (1052)
T ss_pred Hh
Confidence 54
No 85
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=90.55 E-value=0.24 Score=48.98 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=39.8
Q ss_pred hhhhhhhccccCcEEEeccchh-HHHHHHHHHHHH-hcC-cCCcceeecCcccCCCCCCccccCCCCCCceecC
Q 047474 183 CMQCADIFFLKADICQLGMDQR-KVNVLAREYCDD-IKR-KNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYME 253 (326)
Q Consensus 183 ~lQaaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k-~~~-~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~ 253 (326)
..|+...+--..|+--||.|-. +|++--+-...- ++. ....+.+|+.+| .. +| +|||||. +|.|.+.
T Consensus 204 sam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l-~~-~G-~KMSKSl-GN~i~~~ 273 (384)
T PRK12418 204 SAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMI-GL-DG-EKMSKSR-GNLVFVS 273 (384)
T ss_pred HHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEE-CC-CC-CcccCcC-CCcCCHH
Confidence 4455555555679999999954 666543333332 332 222234444444 55 67 6999998 5777774
No 86
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.42 E-value=0.22 Score=50.02 Aligned_cols=77 Identities=21% Similarity=0.126 Sum_probs=50.2
Q ss_pred hhhhhhhccccCcEEEeccc-hhHHHHHHHHHHHHhcCcCCc---ceeecCcccCCCCCCccccCCCCCCceecCC----
Q 047474 183 CMQCADIFFLKADICQLGMD-QRKVNVLAREYCDDIKRKNKP---IILSHHMLPGLQQGQEKMSKSDPSSAIYMED---- 254 (326)
Q Consensus 183 ~lQaaD~~~l~~d~~~~G~D-Q~~~~~lar~~~~k~~~~~~p---~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D---- 254 (326)
..|+...+--..||--||.| +-|||+-=+-.++-.... +| .-+|+.+|.= +| +|||||- +|-|.+.|
T Consensus 211 SaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~-~~~a~yWmH~G~l~i--~g-eKMSKSL-GNfiti~d~l~~ 285 (464)
T COG0215 211 SAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGV-KPFAKYWMHNGFLNI--DG-EKMSKSL-GNFITVRDLLKK 285 (464)
T ss_pred HHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCC-CcceeEeEEcceeee--cC-cCccccc-CCeeEHHHHHhh
Confidence 56677777778899999999 558877433333333321 23 3467777654 56 7999998 57787765
Q ss_pred -CHHHHHHHHH
Q 047474 255 -EEAEVNVKIK 264 (326)
Q Consensus 255 -~~~~i~~KI~ 264 (326)
+|+.++--+.
T Consensus 286 ~~p~~lR~~ll 296 (464)
T COG0215 286 YDPEVLRLFLL 296 (464)
T ss_pred cCHHHHHHHHH
Confidence 5666554443
No 87
>PLN02959 aminoacyl-tRNA ligase
Probab=90.30 E-value=0.28 Score=54.67 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=43.0
Q ss_pred cccCcEEEeccchhHHHHHHHHHHHH---hcCcCCcc-eeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHH
Q 047474 191 FLKADICQLGMDQRKVNVLAREYCDD---IKRKNKPI-ILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNV 261 (326)
Q Consensus 191 ~l~~d~~~~G~DQ~~~~~lar~~~~k---~~~~~~p~-~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~ 261 (326)
.+-+|+-+.|.||..++.. .-+... ++..+-|. ++.+.+|. + +| +|||||. +|.|.+.| .++.+|-
T Consensus 669 ~yP~Dl~~sG~Dii~~wl~-~~l~~~~al~~~~P~p~~v~v~G~V~-~-~G-~KMSKSk-GNvI~p~diI~kyGADalRl 743 (1084)
T PLN02959 669 WYPFDLRVSGKDLIQNHLT-FAIYNHTAIWAEEHWPRGFRCNGHLM-L-NS-EKMSKST-GNFLTLRQAIEEFSADATRF 743 (1084)
T ss_pred hCCCeEEEecccHHHHHHH-HHHHHHHHhcCCCCCCceEEEccEEe-c-CC-cCccccC-CCcCCHHHHHHHhCchHHHH
Confidence 3568999999999765543 222222 22222222 45566666 5 77 7999998 68888866 4555665
Q ss_pred HHH
Q 047474 262 KIK 264 (326)
Q Consensus 262 KI~ 264 (326)
-+.
T Consensus 744 ~la 746 (1084)
T PLN02959 744 ALA 746 (1084)
T ss_pred HHh
Confidence 553
No 88
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=90.23 E-value=0.27 Score=54.27 Aligned_cols=70 Identities=23% Similarity=0.191 Sum_probs=42.8
Q ss_pred ccCcEEEeccchhHH---HHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRKV---NVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~---~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
+.+|+.+.|.||... .++..-++ -++..+--.++.+.++... +| +|||||. +|.|...| .++.+|--+
T Consensus 544 ~Pad~~~~G~Di~r~Wf~~l~~~~~~-~~~~~pfk~v~~hG~Vld~-~G-~KMSKSl-GNvIdP~dli~~yGaDalR~~l 619 (975)
T PRK06039 544 FPADFIVEGIDQTRGWFYTLLALSTA-LFDRPPYKNVLVHGHVLDE-DG-QKMSKSL-GNYVDPFEVFDKYGADALRWYL 619 (975)
T ss_pred CCceEEEechhhHhhHHHHHHHHHHH-hcCCCcccEEEEeeeEECC-CC-CCcCCCC-CCcCCHHHHHHHhChHHHHHHH
Confidence 458899999999642 22222221 1232211135667788776 67 6999998 68887655 455566555
Q ss_pred Hh
Q 047474 264 KK 265 (326)
Q Consensus 264 ~k 265 (326)
..
T Consensus 620 ls 621 (975)
T PRK06039 620 LS 621 (975)
T ss_pred Hh
Confidence 44
No 89
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=90.18 E-value=0.24 Score=49.31 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=45.6
Q ss_pred EEEcccCCCCccchhhhhHH--HHHHHHHH-CCCeEEEEEecceeeecCC-------CCCCHHH-HHHHHHHHHHHHHHc
Q 047474 52 CYDGFEPSGRMHIAQGVMKA--ISVNKLTS-AGCKVKIWVADWFAQLNNK-------MGGDLKK-IQTVGRYLIEIWIAV 120 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~--~~~~~lq~-aG~~v~ilIaD~~a~~~~~-------~~~~~~~-i~~~~~~~~~~~~A~ 120 (326)
..||-=|=+.+||||..... -.+.++++ .|++|.++.+.-. ++|| .|.++++ .+.+...+.+++.++
T Consensus 40 YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD--~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~L 117 (411)
T TIGR03447 40 YVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTD--VDDPLFERAERDGVDWRELGTSQIDLFREDMEAL 117 (411)
T ss_pred EEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCc--hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 55676677899999932211 13555554 6999887744211 1222 1334433 344556677888898
Q ss_pred CCC-CCceEEEeCChhH
Q 047474 121 GMR-TERVEFLWSSEEI 136 (326)
Q Consensus 121 G~d-~~k~~~~~~Sd~~ 136 (326)
|+. |+ .+...++.+
T Consensus 118 ni~~~d--~~~RaTe~i 132 (411)
T TIGR03447 118 RVLPPR--DYIGAVESI 132 (411)
T ss_pred CCCCCC--cccCCCCCH
Confidence 864 43 244444433
No 90
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=89.95 E-value=0.27 Score=53.51 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=44.4
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHH--h-cCcCCc--ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHH
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDD--I-KRKNKP--IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNV 261 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k--~-~~~~~p--~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~ 261 (326)
+.+|+.+.|.||...+.. +-++.. + +. .| .++.|.++... +| +|||||. +|.|++.| .++.+|-
T Consensus 477 ~P~d~~~~G~Dii~fw~~-~~~~~~~~~~~~--~Pfk~v~~hG~v~d~-~G-~KMSKS~-GN~i~p~~~i~~ygaDalR~ 550 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFWVA-RMIFRSLALTGQ--VPFKEVYIHGLVRDE-QG-RKMSKSL-GNVIDPLDVIEKYGADALRF 550 (861)
T ss_pred CCcceeecchhhhhHHHH-HHHHHHHHhcCC--CchheEEEeeEEECC-CC-CCCCcCC-CCCCCHHHHHHHhChHHHHH
Confidence 357899999999755432 222222 2 22 24 45667888887 67 6999998 68888765 4566665
Q ss_pred HHHh
Q 047474 262 KIKK 265 (326)
Q Consensus 262 KI~k 265 (326)
-+..
T Consensus 551 ~l~~ 554 (861)
T TIGR00422 551 TLAS 554 (861)
T ss_pred HHHh
Confidence 5544
No 91
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=89.71 E-value=0.54 Score=45.04 Aligned_cols=70 Identities=9% Similarity=0.099 Sum_probs=39.4
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe-cceeee----cCCCCCCHHHH-HHHHHHHHHHHHHcCCCCCc
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA-DWFAQL----NNKMGGDLKKI-QTVGRYLIEIWIAVGMRTER 126 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa-D~~a~~----~~~~~~~~~~i-~~~~~~~~~~~~A~G~d~~k 126 (326)
-|+|.+||||.....+ .+.++++ .|++|.++.+ |.|..- -...|.+++++ +.+...+.+.+.++|++++.
T Consensus 10 y~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 10 YVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4568999999432221 3555555 5888766643 333110 00123344433 33455667888999988774
No 92
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=89.28 E-value=0.27 Score=53.56 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=45.1
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcC-cCCc--ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKR-KNKP--IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~-~~~p--~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
+.+|+.+.|.||..+ =.+|-++..+.. ...| .++.|.++.+. +| +|||||. +|.|+..| .++.+|--+
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~-~G-~KMSKSl-GNvIdP~dvi~~yGaDalR~~l 547 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDE-QG-RKMSKSK-GNVIDPLDLIDKYGADALRFTL 547 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECC-CC-CCcccCC-CCCCCHHHHHHHhChHHHHHHH
Confidence 357899999998654 233333333211 0124 45678899888 67 6999998 68888766 456666555
Q ss_pred Hh
Q 047474 264 KK 265 (326)
Q Consensus 264 ~k 265 (326)
..
T Consensus 548 l~ 549 (874)
T PRK05729 548 AA 549 (874)
T ss_pred Hh
Confidence 54
No 93
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=89.00 E-value=1.3 Score=47.91 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=45.5
Q ss_pred CCeEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecce-eeec----CCCCCCH-HHHHHHHHHHHHHHH
Q 047474 49 QPICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWF-AQLN----NKMGGDL-KKIQTVGRYLIEIWI 118 (326)
Q Consensus 49 ~~~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~-a~~~----~~~~~~~-~~i~~~~~~~~~~~~ 118 (326)
+..+..|+ -|||.+|+||.....+ .+.++++ .|++|....|-.| +.-. .+.|.++ +-..++...+.++++
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33477776 3349999999543332 3666776 5888766654333 2110 0112232 334556677788999
Q ss_pred HcCCCCC
Q 047474 119 AVGMRTE 125 (326)
Q Consensus 119 A~G~d~~ 125 (326)
++|+..|
T Consensus 113 ~lGi~~D 119 (805)
T PRK00390 113 SLGFSYD 119 (805)
T ss_pred HhCCccc
Confidence 9999665
No 94
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=88.92 E-value=0.3 Score=53.39 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=42.2
Q ss_pred ccCcEEEeccchhHH-HHHHHHHHHH--hcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHH
Q 047474 192 LKADICQLGMDQRKV-NVLAREYCDD--IKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVK 262 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~-~~lar~~~~k--~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~K 262 (326)
+.+|+.+.|.||..+ +.... +... ++..+-| .++.+.++.. +| +|||||. +|.|.+.| .++.+|=-
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-~~~~a~~~~~~~Pk~v~~hG~vl~--~G-~KMSKS~-GNvVdp~eii~~yGaDalRl~ 603 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-FNHVAIFPEEKWPRGIVVNGFVLL--EG-KKMSKSK-GNVIPLRKAIEEYGADVVRLY 603 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-HHHHHhcCCCccCcEEEEcceEEE--CC-ccccCcC-CCCCCHHHHHHHcChHHHHHH
Confidence 457999999999653 23222 1122 2211123 4566777765 56 7999998 68887765 56666665
Q ss_pred HHh
Q 047474 263 IKK 265 (326)
Q Consensus 263 I~k 265 (326)
+..
T Consensus 604 L~~ 606 (897)
T PRK12300 604 LTS 606 (897)
T ss_pred HHh
Confidence 554
No 95
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=88.63 E-value=1.8 Score=44.42 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=41.2
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecceeeecC-------CCCCCHHHH-HHHHHHHHHHHHHcCCCCC
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFAQLNN-------KMGGDLKKI-QTVGRYLIEIWIAVGMRTE 125 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a~~~~-------~~~~~~~~i-~~~~~~~~~~~~A~G~d~~ 125 (326)
-|+|.+||||...... .+.++++ .|++|.++.+=.+. ++ +.|.++.++ +.+...+.+.+.++|++++
T Consensus 9 ~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~--g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 9 YANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEH--GTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCC--CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4889999999543321 3555555 58888777552211 11 113344433 3445667788999999887
Q ss_pred c
Q 047474 126 R 126 (326)
Q Consensus 126 k 126 (326)
.
T Consensus 87 ~ 87 (530)
T TIGR00398 87 R 87 (530)
T ss_pred C
Confidence 4
No 96
>PLN02943 aminoacyl-tRNA ligase
Probab=88.54 E-value=0.41 Score=52.72 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=46.6
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCc-CCc--ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRK-NKP--IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~-~~p--~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
+.+|+.+.|.||.. +=++|-++...... ..| .++.|.++... +| +|||||. +|.|+..| .++.+|--+
T Consensus 535 yP~dl~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~-~G-~KMSKS~-GN~i~p~~~i~~ygaDalR~~l 610 (958)
T PLN02943 535 YPTTVLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDS-QG-RKMSKTL-GNVIDPLDTIKEFGTDALRFTL 610 (958)
T ss_pred CCCeEEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECC-CC-CcccCcC-CCCCCHHHHHHhcCChHHHHHH
Confidence 45789999999973 44555444332210 124 25667888887 67 6999998 68888766 577777666
Q ss_pred Hh
Q 047474 264 KK 265 (326)
Q Consensus 264 ~k 265 (326)
..
T Consensus 611 ~~ 612 (958)
T PLN02943 611 AL 612 (958)
T ss_pred Hh
Confidence 54
No 97
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=88.36 E-value=2.5 Score=40.50 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=33.7
Q ss_pred CcEEEeccchhHHHHHHH-HHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 194 ADICQLGMDQRKVNVLAR-EYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 194 ~d~~~~G~DQ~~~~~lar-~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
.++.++|.|+..++...- -+..-.+......++.+.++. + +| +|||||. +|.|++.|
T Consensus 236 ~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~-~-~g-~kmSkS~-gn~i~~~~ 293 (319)
T cd00814 236 ELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLT-V-EG-KKMSKSR-GNVVDPDD 293 (319)
T ss_pred ceEEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEE-E-CC-eeecccC-CcccCHHH
Confidence 468999999987653321 122223422112344455553 3 56 6999998 68898843
No 98
>PLN02610 probable methionyl-tRNA synthetase
Probab=88.08 E-value=2 Score=46.57 Aligned_cols=80 Identities=9% Similarity=-0.017 Sum_probs=49.1
Q ss_pred EEEcc-cCCCCccchhhhhH---HHHHHHHHH-CCCeEEEEEecc-eeeec----CCCCCCHH-HHHHHHHHHHHHHHHc
Q 047474 52 CYDGF-EPSGRMHIAQGVMK---AISVNKLTS-AGCKVKIWVADW-FAQLN----NKMGGDLK-KIQTVGRYLIEIWIAV 120 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~---~~~~~~lq~-aG~~v~ilIaD~-~a~~~----~~~~~~~~-~i~~~~~~~~~~~~A~ 120 (326)
|-+.+ -|+|.+||||..-. .-.+.++++ .|++|.++.|.. |..-. .+.|.+++ -+.++...+.+.|.++
T Consensus 21 ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l 100 (801)
T PLN02610 21 ITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWF 100 (801)
T ss_pred EeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 44554 67899999994411 123667776 599988876644 43211 01133333 3455666777889999
Q ss_pred CCCCCceEEEeCC
Q 047474 121 GMRTERVEFLWSS 133 (326)
Q Consensus 121 G~d~~k~~~~~~S 133 (326)
|++.|+ |++.+
T Consensus 101 ~i~~D~--f~rT~ 111 (801)
T PLN02610 101 DISFDK--FGRTS 111 (801)
T ss_pred CCcccc--CccCC
Confidence 999884 44444
No 99
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=87.93 E-value=1.1 Score=43.33 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=21.8
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEec
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVAD 90 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD 90 (326)
-|+|.+||||+....+ .+.++++ .|++|.+..+-
T Consensus 11 ~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~ 47 (338)
T cd00818 11 YANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGW 47 (338)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCc
Confidence 4678999999543222 3555555 68888665543
No 100
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=87.90 E-value=0.44 Score=52.74 Aligned_cols=58 Identities=28% Similarity=0.285 Sum_probs=38.4
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCc-CCcc--eeecCcccCCCCCCccccCCCCCCceecC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRK-NKPI--ILSHHMLPGLQQGQEKMSKSDPSSAIYME 253 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~-~~p~--~l~~~~lp~L~~g~~KMSKS~~~s~I~L~ 253 (326)
+-+|+.+.|.||.. +=.+|-++..+... ..|+ ++.|.++.+- +| +|||||. +|.|...
T Consensus 537 ~P~d~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~-~G-~KMSKSl-GNvIdP~ 597 (995)
T PTZ00419 537 FPTSLLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDS-QG-EKMSKSK-GNVIDPL 597 (995)
T ss_pred CCCcEEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECC-CC-CCcccCC-CCcCChH
Confidence 46799999999865 33444444433211 1353 6778899887 67 6999998 5777543
No 101
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.87 E-value=1.4 Score=47.42 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhhcccccCHHHHHHHHhcC-CCCeEEEcc-cCCCCccchhh---hhHHHHHHHHHHC-CCeEEEEEecce
Q 047474 19 SVEEKFRLVRSIGEECIQEDELLNLLTKK-PQPICYDGF-EPSGRMHIAQG---VMKAISVNKLTSA-GCKVKIWVADWF 92 (326)
Q Consensus 19 ~~~~~~~li~r~~~e~~~~~eL~~lL~~~-~~~~iy~G~-~PTG~lHLG~~---~~~~~~~~~lq~a-G~~v~ilIaD~~ 92 (326)
..|+++...+....-.-..++- .+ ++..+..=| -|||.||+||. ...- -+.+++++ |+.|..- -+||
T Consensus 9 ~IE~KWQ~~W~e~~~Fe~~~d~-----~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~D-v~aRykRm~GyNVL~P-MGwd 81 (814)
T COG0495 9 EIEEKWQKRWEEAKVFEADEDS-----DKPEKFYVLVMFPYPSGALHVGHVRNYTIGD-VIARYKRMQGYNVLHP-MGWD 81 (814)
T ss_pred HHHHHHHHHHHhcCCcccCCCC-----CCCCceEEEeCCCCCCCCcccCccccccHHH-HHHHHHHhcCCeeccc-Cccc
Confidence 4677888877553211111100 01 234466666 79999999992 2222 36777774 7776544 3577
Q ss_pred eeecCC-------CCCCHH-HHHHHHHHHHHHHHHcCCCCC
Q 047474 93 AQLNNK-------MGGDLK-KIQTVGRYLIEIWIAVGMRTE 125 (326)
Q Consensus 93 a~~~~~-------~~~~~~-~i~~~~~~~~~~~~A~G~d~~ 125 (326)
|+ |-| .+.++. -...+..+++++++++|++.|
T Consensus 82 af-GlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siD 121 (814)
T COG0495 82 AF-GLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSID 121 (814)
T ss_pred cc-CchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccc
Confidence 66 211 111222 234566677788999998877
No 102
>PLN02381 valyl-tRNA synthetase
Probab=87.86 E-value=0.46 Score=52.89 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=39.5
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcC-cCCcc--eeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKR-KNKPI--ILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~-~~~p~--~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
+-+|+.+-|.||. ++=.+|-++..+.. ...|+ ++.|.++.+- +| +|||||. +|.|...|
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~-~G-~KMSKS~-GNvIdP~~ 668 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQLGGDVPFRKVYLHPMIRDA-HG-RKMSKSL-GNVIDPLE 668 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHHhCCCCchHHheecceEECC-CC-CCCCCCC-CCCCCHHH
Confidence 4688999999996 33444444443321 11243 5778999998 67 6999998 68776544
No 103
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=87.73 E-value=0.92 Score=49.95 Aligned_cols=70 Identities=20% Similarity=0.103 Sum_probs=44.1
Q ss_pred ccCcEEEeccchhHH-HHHHHHHHHHhcCc--CCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHH
Q 047474 192 LKADICQLGMDQRKV-NVLAREYCDDIKRK--NKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVK 262 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~-~~lar~~~~k~~~~--~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~K 262 (326)
+-+|+.+.|.||..+ +..-. +....... +-| .++++.+|.. +| +|||||. +|.|.+.| .++.+|--
T Consensus 572 yP~D~~~~GkDii~~H~~~~i-~~~~a~~~~~~~Pk~i~~~G~vl~--~G-~KMSKSl-GNvI~p~d~i~~yGaDalRl~ 646 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYI-FHHVAIFPEKFWPRGIVVNGYVML--EG-KKMSKSK-GNVLTLEQAVEKFGADVARLY 646 (938)
T ss_pred CCceEEEEeeccccchHHHHH-HHHHHcCCccccCcEEEEeceEEe--CC-ccccCcC-CCCCCHHHHHHHcChHHHHHH
Confidence 467999999999753 33221 11111111 112 4566677664 66 7999998 68888766 57777777
Q ss_pred HHhc
Q 047474 263 IKKA 266 (326)
Q Consensus 263 I~kA 266 (326)
+..+
T Consensus 647 Ll~~ 650 (938)
T TIGR00395 647 IADA 650 (938)
T ss_pred HHhc
Confidence 7654
No 104
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=87.69 E-value=1.7 Score=47.39 Aligned_cols=75 Identities=20% Similarity=0.111 Sum_probs=45.3
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecc-eeee-c---CCCCCCH-HHHHHHHHHHHHHHHHc
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADW-FAQL-N---NKMGGDL-KKIQTVGRYLIEIWIAV 120 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~-~a~~-~---~~~~~~~-~~i~~~~~~~~~~~~A~ 120 (326)
.+..|+ -|||.+|+||.....+ .+.++++ .|++|....|-. |..= - -+.|.++ +-..++...+.++++++
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 466665 6779999999543332 3666776 588887665533 2220 0 0112232 34455667788899999
Q ss_pred CCCCC
Q 047474 121 GMRTE 125 (326)
Q Consensus 121 G~d~~ 125 (326)
|+..+
T Consensus 112 G~~~D 116 (842)
T TIGR00396 112 GFSYD 116 (842)
T ss_pred CCccc
Confidence 97654
No 105
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=87.47 E-value=0.42 Score=50.44 Aligned_cols=78 Identities=21% Similarity=0.189 Sum_probs=52.5
Q ss_pred hhhhhhhccccCcEEEeccchh-HHH--HHHHHHHHHhcC-cCCcceeecCcccCCCCCCccccCCCCCCceecCC----
Q 047474 183 CMQCADIFFLKADICQLGMDQR-KVN--VLAREYCDDIKR-KNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED---- 254 (326)
Q Consensus 183 ~lQaaD~~~l~~d~~~~G~DQ~-~~~--~lar~~~~k~~~-~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D---- 254 (326)
..|+.|++--..||--||.|-. ||| ++|.--|- ++. ...-..+|+.+|. + +| +|||||. +|.|.+.|
T Consensus 258 sam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~L~-i-~G-~KMSKSL-GNfItp~dlLek 332 (651)
T PTZ00399 258 SAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAY-FDKHQWVNYFLHSGHLH-I-KG-LKMSKSL-KNFITIRQALSK 332 (651)
T ss_pred HHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHh-hCCCCCCcEEEEEEEEE-e-cc-chhhhcC-CCcccHHHHHHH
Confidence 5777888877899999999973 663 45544333 332 1122456656643 5 56 6999998 68888876
Q ss_pred -CHHHHHHHHHh
Q 047474 255 -EEAEVNVKIKK 265 (326)
Q Consensus 255 -~~~~i~~KI~k 265 (326)
+++.++--+..
T Consensus 333 ygaDaLR~~lLs 344 (651)
T PTZ00399 333 YTARQIRLLFLL 344 (651)
T ss_pred cChHHHHHHHHh
Confidence 67777776654
No 106
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.08 E-value=2.1 Score=43.83 Aligned_cols=72 Identities=22% Similarity=0.312 Sum_probs=38.5
Q ss_pred EEEcc--cCCCCccchhhhhHHHHHH-HHHHCC-CeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 047474 52 CYDGF--EPSGRMHIAQGVMKAISVN-KLTSAG-CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 52 iy~G~--~PTG~lHLG~~~~~~~~~~-~lq~aG-~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
+.+-| +|||.+||||.--. -++ .|+.++ .++++= =|.+ ||. ...++ --.-+.+++--+|+.|++
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAA--LLNqYfa~~~~G~LIvR-FDDT----NPa-KE~~e---Fe~~IleDl~~LgIkpd~- 268 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAA--LLNQYFAQAYQGKLIVR-FDDT----NPA-KENEE---FEDVILEDLSLLGIKPDR- 268 (712)
T ss_pred eEEecCCCCCceeehhhHHHH--HHHHHHHHhcCceEEEE-ecCC----Ccc-hhhHH---HHHHHHHHHHHhCcCcce-
Confidence 45555 89999999993211 133 355543 244333 2222 231 11222 223345677778999986
Q ss_pred EEEeCChhH
Q 047474 128 EFLWSSEEI 136 (326)
Q Consensus 128 ~~~~~Sd~~ 136 (326)
+-..||++
T Consensus 269 -~TyTSDyF 276 (712)
T KOG1147|consen 269 -VTYTSDYF 276 (712)
T ss_pred -eeechhhH
Confidence 45567744
No 107
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.00 E-value=4.8 Score=41.73 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=60.9
Q ss_pred cCHHHHHHHHhcCCCCeEEEcc--cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHH
Q 047474 35 IQEDELLNLLTKKPQPICYDGF--EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY 112 (326)
Q Consensus 35 ~~~~eL~~lL~~~~~~~iy~G~--~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~ 112 (326)
.+++-|++.|+.. .-.++|-| +|.|.+||||.--.+++.-.....|.-++ |-=|.+ | +.++-.++-..
T Consensus 233 ~t~ellk~HL~~T-GGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cy-LRfDDT----N----PEkEee~yf~s 302 (764)
T KOG1148|consen 233 HTEELLKEHLERT-GGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCY-LRFDDT----N----PEKEEEEYFES 302 (764)
T ss_pred chHHHHHHHHHhh-CCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEE-EecCCC----C----cchhhHHHHHH
Confidence 3567788888863 23588888 88899999994211112222222333332 222221 1 12233344444
Q ss_pred HHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHH---hhhccCHHHHHhh
Q 047474 113 LIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMD---IARRNKLPRIMRC 162 (326)
Q Consensus 113 ~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~---i~~~~tl~~~~~~ 162 (326)
+..+..=+|+.|-| +-..||++.++-+....++.+ -.=|.+..++++.
T Consensus 303 I~e~V~WLG~~P~k--vTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~ 353 (764)
T KOG1148|consen 303 IKEMVAWLGFEPYK--VTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKER 353 (764)
T ss_pred HHHHHHHhCCCcee--eecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhh
Confidence 44555557999954 667899665553333333211 0115677777743
No 108
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.99 E-value=0.59 Score=50.31 Aligned_cols=74 Identities=23% Similarity=0.406 Sum_probs=47.5
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCc----C--Ccc--eeecCcccCCCCCCccccCCCCCCceecCC-----CHHH
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRK----N--KPI--ILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAE 258 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~----~--~p~--~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~ 258 (326)
+-+|+-+||.|+-.+|.+=-.+-.++=+. + .|+ ++.+.||.+- +| +|||||. +|.|.+++ -++.
T Consensus 525 ~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~-~g-~KMSKSK-gN~v~p~~~i~~yGADt 601 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGE-EG-EKMSKSK-GNVVDPEEAVEKYGADT 601 (814)
T ss_pred cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEec-CC-Ccccccc-CCCCCHHHHHHHhCchH
Confidence 45899999999987776654444443221 1 132 4556677775 56 6999998 68887766 3555
Q ss_pred HHHHHHhccCCC
Q 047474 259 VNVKIKKAYCPP 270 (326)
Q Consensus 259 i~~KI~kA~c~~ 270 (326)
+|=-+ +||.|
T Consensus 602 ~Rl~~--m~~ap 611 (814)
T COG0495 602 VRLYI--MFAAP 611 (814)
T ss_pred HHHHH--HhhCC
Confidence 55555 45555
No 109
>PLN02286 arginine-tRNA ligase
Probab=86.53 E-value=1.2 Score=46.36 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=43.4
Q ss_pred EEEeccchhHHHHHHHHHHHHhcCcCC-----cceeecCcccCCCCCCccccCCCCCCceecCCC
Q 047474 196 ICQLGMDQRKVNVLAREYCDDIKRKNK-----PIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDE 255 (326)
Q Consensus 196 ~~~~G~DQ~~~~~lar~~~~k~~~~~~-----p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~ 255 (326)
+-++|.||..|+.-....++.+|.... -.++..-||.++ +| +||||.. ++.|.|.|=
T Consensus 331 IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~-~g-~kmStR~-G~~v~L~dl 392 (576)
T PLN02286 331 IYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGE-DG-KRFRTRS-GEVVRLVDL 392 (576)
T ss_pred EEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECC-CC-CcccCCC-CCeeEHHHH
Confidence 557899999999999999999996311 223445678556 66 5999886 689999773
No 110
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.51 E-value=2.9 Score=42.45 Aligned_cols=76 Identities=14% Similarity=0.295 Sum_probs=42.9
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecc-eee-ec---CCCCCCHH-HHHHHHHHHHHHHHHcCCCCCce
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADW-FAQ-LN---NKMGGDLK-KIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~-~a~-~~---~~~~~~~~-~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
-|+|.+||||+..... .+.++++ .|++|.++.+-. |.. +- ...|.+++ -.+.+...+.+++.++|++++.
T Consensus 11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~- 89 (511)
T PRK11893 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD- 89 (511)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC-
Confidence 5678999999432221 3455554 699887764422 211 00 01123333 3344556677889999998773
Q ss_pred EEEeCCh
Q 047474 128 EFLWSSE 134 (326)
Q Consensus 128 ~~~~~Sd 134 (326)
++..++
T Consensus 90 -~~~t~~ 95 (511)
T PRK11893 90 -FIRTTD 95 (511)
T ss_pred -ceeCCC
Confidence 444444
No 111
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=86.43 E-value=2.2 Score=42.05 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=25.0
Q ss_pred EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecc
Q 047474 52 CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADW 91 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~ 91 (326)
+.+|. -|+|.+||||+..... .+.++++ .|++|.+..|-.
T Consensus 5 i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D 48 (382)
T cd00817 5 IDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTD 48 (382)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 34444 5788999999543322 3566666 588886665533
No 112
>PLN02563 aminoacyl-tRNA ligase
Probab=86.34 E-value=0.31 Score=53.58 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=26.6
Q ss_pred cccCcEEEeccch-hHHHHHHHHHHHHhcC-----cCCcc--eeecCcccC
Q 047474 191 FLKADICQLGMDQ-RKVNVLAREYCDDIKR-----KNKPI--ILSHHMLPG 233 (326)
Q Consensus 191 ~l~~d~~~~G~DQ-~~~~~lar~~~~k~~~-----~~~p~--~l~~~~lp~ 233 (326)
.+-+|+-++|.|| .-|+..+|-....+-. ...|+ ++++.|+.+
T Consensus 614 w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~ 664 (963)
T PLN02563 614 WMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILG 664 (963)
T ss_pred cCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeec
Confidence 4569999999999 3566666666544321 11243 456677765
No 113
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=85.68 E-value=1.1 Score=46.53 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=44.3
Q ss_pred cCc--EEEeccchhHHHHHHHHHHHHhcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHH
Q 047474 193 KAD--ICQLGMDQRKVNVLAREYCDDIKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261 (326)
Q Consensus 193 ~~d--~~~~G~DQ~~~~~lar~~~~k~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~ 261 (326)
++| +-++|.||.+|+.-....+..+|.. .| -+.++.+-.-. + .|||||. ++.|.+.|=.++..+
T Consensus 326 ~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~-~~~~l~h~~~~~V~--~-~kmSkr~-Gn~V~~~dll~~~~~ 392 (566)
T TIGR00456 326 GFDKMIYVWGSDHHLHIAQFFAILEKLGFY-KKKELIHLNFGMVP--L-GSMKTRR-GNVISLDNLLDEASK 392 (566)
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHcCCC-CCCceEEEEEEEEE--C-CCCCccC-CceeeHHHHHHHHHH
Confidence 355 4578999999999999999999953 24 24444332211 2 4999998 699999864444333
No 114
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=85.48 E-value=0.27 Score=53.44 Aligned_cols=71 Identities=24% Similarity=0.328 Sum_probs=44.5
Q ss_pred ccCcEEEeccchh-HHHHHHHHHHHHh---cCc--CCcc--eeecCcccC----CCCCC---------------------
Q 047474 192 LKADICQLGMDQR-KVNVLAREYCDDI---KRK--NKPI--ILSHHMLPG----LQQGQ--------------------- 238 (326)
Q Consensus 192 l~~d~~~~G~DQ~-~~~~lar~~~~k~---~~~--~~p~--~l~~~~lp~----L~~g~--------------------- 238 (326)
+-+|+.++|.||. -|+..+|-...-+ +.. ..|+ ++.+.|+.+ - +|.
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~-~G~~~~~~~~~~~~~~~~~~~~~~ 597 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPP-NGKSPPDELTERDEKAKDKSGGEL 597 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecC-CCCccChhhhccccccccccCCcc
Confidence 4689999999994 5555556543222 211 1243 566777776 4 452
Q ss_pred -----ccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 239 -----EKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 239 -----~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
+|||||. +|.|.+.| .++.+|--+.
T Consensus 598 ~~~~~~KMSKS~-GN~v~p~~ii~~ygaDalRl~~l 632 (842)
T TIGR00396 598 VVVGYEKMSKSK-GNGIDPQEIVKKHGADALRLYIM 632 (842)
T ss_pred cccchhhhhhcC-CCcCCHHHHHHHcCchHHHHHHH
Confidence 2999998 68887765 4666666555
No 115
>PLN02882 aminoacyl-tRNA ligase
Probab=85.47 E-value=0.85 Score=51.27 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=41.2
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHH---hcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDD---IKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k---~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
.-+|+.+-|.||.... +.+-++-. ++..+--.++.|.++..- +| +|||||. +|.|...+ .++.+|--+
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde-~G-~KMSKSl-GNvIdP~evi~~YGADaLR~~L 641 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAE-DG-KKMSKSL-KNYPDPNEVIDKYGADALRLYL 641 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECC-CC-CCcccCC-CCCCCHHHHHHHhCcHHHHHHH
Confidence 3488999999996543 22222222 233211235677888776 67 7999998 68776543 344455444
Q ss_pred H
Q 047474 264 K 264 (326)
Q Consensus 264 ~ 264 (326)
.
T Consensus 642 l 642 (1159)
T PLN02882 642 I 642 (1159)
T ss_pred H
Confidence 4
No 116
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=84.74 E-value=0.6 Score=49.16 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=41.3
Q ss_pred cCcEEEeccchhHHHHHHH-HHHHHhcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 193 KADICQLGMDQRKVNVLAR-EYCDDIKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar-~~~~k~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
.+|+.+.|.||..++.+-= -+..-.+.. -| .++.|.++.. +| +|||||. +|.|+..| +++.+|--+.+
T Consensus 254 p~~~~~~GkDii~fH~i~wpa~l~~~~~~-~p~~v~~hg~l~~--eg-~KMSKS~-GN~i~p~d~l~~ygaD~lR~~L~~ 328 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYWPIMLMALGLP-LPKKVFAHGWWLM--KD-GKMSKSK-GNVVDPEELVDRYGLDALRYYLLR 328 (648)
T ss_pred ccceEEEeeeecchhHHHHHHHHHhCCCC-CCcEEEecceEEE--CC-ceecccC-CcccCHHHHHHHcCCcHHHHHHHh
Confidence 3578999999987554320 111123332 23 2444556553 56 7999998 68898766 56666666654
No 117
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=84.17 E-value=0.74 Score=47.46 Aligned_cols=67 Identities=21% Similarity=0.233 Sum_probs=41.2
Q ss_pred cEEEeccchhHHHHH-HHHHHHHhcC-cCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 195 DICQLGMDQRKVNVL-AREYCDDIKR-KNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 195 d~~~~G~DQ~~~~~l-ar~~~~k~~~-~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
++.+.|.|+..++.+ ---+..-.+. ...| .++.+.++. + +| +|||||. +|.|+..| .++.+|--+.+
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~-~G-~KMSKS~-GN~I~p~dli~~yGaDalR~~ll~ 363 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-L-EG-GKFSKSR-GWGIWVDDALERYPPDYLRYYLAA 363 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-E-CC-eeeccCC-CcccCHHHHHHHcCcHHHHHHHHh
Confidence 488889999876553 2233333331 1123 455566764 5 67 6999998 68888766 56666655544
No 118
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=84.14 E-value=0.93 Score=51.08 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=44.7
Q ss_pred cchhhhhhhhhhhhhhc--cccCcEEEeccchhHHH---HHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCC
Q 047474 174 LTAAQILYPCMQCADIF--FLKADICQLGMDQRKVN---VLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSS 248 (326)
Q Consensus 174 ~~~~~~~YP~lQaaD~~--~l~~d~~~~G~DQ~~~~---~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s 248 (326)
.+++.+-||--...+.+ .+-+|+.+=|.||.... ++..-++ -++..+--.++.|.++.+- +| +|||||. +|
T Consensus 652 ~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf~s~l~~s~~-l~~~~PfK~VlvHG~Vld~-dG-~KMSKSl-GN 727 (1205)
T PTZ00427 652 MPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWFYTLLVISTL-LFDKAPFKNLICNGLVLAS-DG-KKMSKRL-KN 727 (1205)
T ss_pred ChHHHhCCCcccchhhHhccCCceEEEEecchhccHHHHHHHHHHH-hcCCCCcceeEEccEEEcC-CC-CCcccCC-CC
Confidence 34566667642112222 34689999999996432 2333332 2343211135778888887 77 6999998 57
Q ss_pred ceecC
Q 047474 249 AIYME 253 (326)
Q Consensus 249 ~I~L~ 253 (326)
.|...
T Consensus 728 vIDP~ 732 (1205)
T PTZ00427 728 YPDPL 732 (1205)
T ss_pred CCCHH
Confidence 77543
No 119
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.41 E-value=1.6 Score=47.67 Aligned_cols=54 Identities=28% Similarity=0.198 Sum_probs=33.7
Q ss_pred CcEEEeccchh-HHHHHHHHHH-HHhcCc-CCcceeecCcccCCCCCCccccCCCCCCcee
Q 047474 194 ADICQLGMDQR-KVNVLAREYC-DDIKRK-NKPIILSHHMLPGLQQGQEKMSKSDPSSAIY 251 (326)
Q Consensus 194 ~d~~~~G~DQ~-~~~~lar~~~-~k~~~~-~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~ 251 (326)
+|+.+=|+||. +=|...--+. --+++. ++ .+|+|.++.+= +| .|||||. +|.|.
T Consensus 556 aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk-~vltHGfvlDe-~G-rKMSKSl-GN~v~ 612 (933)
T COG0060 556 ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYK-NVLTHGFVLDE-KG-RKMSKSL-GNVVD 612 (933)
T ss_pred CcEEEEeccccchhHHHHHHHHHHHcCCchHH-HHhhcccEECC-CC-CCccccC-CCcCC
Confidence 58999999995 3333221111 123322 22 36788888888 67 6999998 56653
No 120
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=83.29 E-value=6 Score=41.73 Aligned_cols=76 Identities=17% Similarity=0.344 Sum_probs=43.8
Q ss_pred cCCCCccchhhhhHH--HHHHHHHH-CCCeEEEEEe-cceeeec----CCCCCCHH-HHHHHHHHHHHHHHHcCCCCCce
Q 047474 57 EPSGRMHIAQGVMKA--ISVNKLTS-AGCKVKIWVA-DWFAQLN----NKMGGDLK-KIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~--~~~~~lq~-aG~~v~ilIa-D~~a~~~----~~~~~~~~-~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
-|+|.+||||..... -.+.++++ .|++|.++-+ |-|..-- ...|.+++ -+..+...+.+.+.++|++.+.
T Consensus 14 y~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~- 92 (648)
T PRK12267 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK- 92 (648)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC-
Confidence 577999999943221 13556665 5888766544 3332100 01123333 3344556677889999998873
Q ss_pred EEEeCCh
Q 047474 128 EFLWSSE 134 (326)
Q Consensus 128 ~~~~~Sd 134 (326)
|+..++
T Consensus 93 -f~rTt~ 98 (648)
T PRK12267 93 -FIRTTD 98 (648)
T ss_pred -CeeCCC
Confidence 565555
No 121
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.19 E-value=0.99 Score=48.83 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=29.2
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecceeee
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFAQL 95 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a~~ 95 (326)
-+||++|+||.+-.++ .+.++++ .|+.|.++-|=.||=+
T Consensus 43 NVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 43 NVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 3599999999654433 4667777 5999999988888743
No 122
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.05 E-value=3.4 Score=39.49 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=38.3
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe-cceeeecCC-------CCCCHHH-HHHHHHHHHHHHHHcCCCC
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA-DWFAQLNNK-------MGGDLKK-IQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa-D~~a~~~~~-------~~~~~~~-i~~~~~~~~~~~~A~G~d~ 124 (326)
-|+|.+||||...... .+.++++ .|++|.++.+ |.| +.| .|.++.+ .+++...+.+++.++|+.+
T Consensus 10 y~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~---g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~ 86 (314)
T cd00812 10 YPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAF---GLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSY 86 (314)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCC---CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccce
Confidence 5789999999432221 3555554 5888765533 222 111 1223322 3445566778889999977
Q ss_pred C
Q 047474 125 E 125 (326)
Q Consensus 125 ~ 125 (326)
+
T Consensus 87 d 87 (314)
T cd00812 87 D 87 (314)
T ss_pred e
Confidence 6
No 123
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=81.47 E-value=1.6 Score=41.46 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=20.6
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
-|+|.+||||+....+ -+.++.+ .|++|.++.+
T Consensus 10 ~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g 45 (312)
T cd00668 10 YANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPG 45 (312)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence 5788999999543222 2444544 6888755543
No 124
>PLN02224 methionine-tRNA ligase
Probab=80.16 E-value=1.6 Score=45.92 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=42.7
Q ss_pred cCcEEEeccchhHHHHHHH-HHHHHhcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 193 KADICQLGMDQRKVNVLAR-EYCDDIKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar-~~~~k~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
..++.++|.|-..+|.+.= -.....+.. -| .++.+.++ .+ +| +|||||. +|.|++.| .++.+|--+..
T Consensus 321 ~~~v~~iGKDii~fH~i~wpa~l~~~g~~-~P~~i~~~g~l-~~-eG-~KMSKS~-GN~i~p~e~l~~ygaD~~R~yLl~ 395 (616)
T PLN02224 321 PASLHLIGKDILRFHAVYWPAMLMSAGLE-LPKMVFGHGFL-TK-DG-MKMGKSL-GNTLEPFELVQKFGPDAVRYFFLR 395 (616)
T ss_pred CcceEEEeecccccHHHHHHHHHHHCCCC-CCcEEEecccE-ec-CC-ccccccC-CccCCHHHHHHHcCcHHHHHHHHh
Confidence 5689999999876544321 111123322 23 34445665 45 67 6999998 68898876 56667666655
Q ss_pred c
Q 047474 266 A 266 (326)
Q Consensus 266 A 266 (326)
.
T Consensus 396 ~ 396 (616)
T PLN02224 396 E 396 (616)
T ss_pred c
Confidence 3
No 125
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=79.84 E-value=8.3 Score=33.98 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=39.4
Q ss_pred EEEc-ccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEeccee-ee-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 52 CYDG-FEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFA-QL-NNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 52 iy~G-~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a-~~-~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
+|.| |+| +|+||..+.. .-+...+ +++|+++.... .. .++ .+.++-.++. .+.+...|++.+++.
T Consensus 3 l~~GrF~P---~H~GHl~~i~---~a~~~~~-~vii~i~s~~~~~~~~~p--~~~~eR~~mi---~~~~~~~~~~~~rv~ 70 (181)
T cd02168 3 VYIGRFQP---FHNGHLAVVL---IALEKAK-KVIILIGSARTARNIKNP--WTSEEREVMI---EAALSDAGADLARVH 70 (181)
T ss_pred EEeeccCC---CCHHHHHHHH---HHHHHCC-eEEEEeCCCCCCCCCCCC--cCHHHHHHHH---HHHHhccCCCcceEE
Confidence 3444 377 8999953221 1133444 88888876532 11 122 2333333332 333455688999998
Q ss_pred EEeCCh
Q 047474 129 FLWSSE 134 (326)
Q Consensus 129 ~~~~Sd 134 (326)
|+-=.|
T Consensus 71 i~pi~D 76 (181)
T cd02168 71 FRPLRD 76 (181)
T ss_pred EEecCC
Confidence 887666
No 126
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=79.81 E-value=4 Score=44.52 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=29.9
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEeccee
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFA 93 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a 93 (326)
.+++|. -+||.+|+||+...++ .+.++++ .|+.|.+..|-.|+
T Consensus 36 ~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 82 (861)
T TIGR00422 36 CIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHA 82 (861)
T ss_pred EEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcC
Confidence 477777 7889999999543332 3666766 59888777765543
No 127
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=79.67 E-value=0.93 Score=49.07 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=40.4
Q ss_pred ccCcEEEeccchh-HHHHHHHHHHHHh---cCc--CCc--ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHH
Q 047474 192 LKADICQLGMDQR-KVNVLAREYCDDI---KRK--NKP--IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAE 258 (326)
Q Consensus 192 l~~d~~~~G~DQ~-~~~~lar~~~~k~---~~~--~~p--~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~ 258 (326)
+-+|+-++|.||. -|+-.+|-...-+ +.. ..| .++++.+| |||||. +|.|...| .++.
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~-GN~i~p~~~i~~ygaD~ 592 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSK-GNVVDPDDIIEKYGADT 592 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCC-CCCCCHHHHHHHcChHH
Confidence 4699999999994 5555555333221 110 123 24555555 999998 68787755 5666
Q ss_pred HHHHHHh
Q 047474 259 VNVKIKK 265 (326)
Q Consensus 259 i~~KI~k 265 (326)
+|--+..
T Consensus 593 lRl~l~~ 599 (805)
T PRK00390 593 ARLFEMF 599 (805)
T ss_pred HHHHHHh
Confidence 6666654
No 128
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=79.47 E-value=5.1 Score=44.50 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=30.0
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEeccee
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFA 93 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a 93 (326)
.+.+|. -|||.+|+||+.-.++ .+.++++ .|+.|.+..|=.|+
T Consensus 63 ~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~ 109 (995)
T PTZ00419 63 VIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHA 109 (995)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCC
Confidence 377777 7899999999543332 3666776 59998777664444
No 129
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.00 E-value=2.2 Score=44.79 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=41.8
Q ss_pred eEEEcc-cCCCCccchhh---hhHHHHHHHHHH-CCCeEEEEEecceeeecCCCCCCHH------------HHHHHHHHH
Q 047474 51 ICYDGF-EPSGRMHIAQG---VMKAISVNKLTS-AGCKVKIWVADWFAQLNNKMGGDLK------------KIQTVGRYL 113 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~---~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~~~~~~~------------~i~~~~~~~ 113 (326)
.+.+=| -|||.+|+||. .+.- .+++|++ .|++|+--+ +|-|+ |.+.| -..+|...+
T Consensus 60 YiLsMFPYPSG~LHiGHvRVYTIsD-~laRf~rm~GynVihPM-GWDaF-----GLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 60 YILSMFPYPSGALHIGHVRVYTISD-ILARFYRMKGYNVIHPM-GWDAF-----GLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred eEEEecCCCCCcccccceEEEEehH-HHHHHHHhcCceeecCC-ccccc-----CCchhhHHHhcCCCchhhhHHHHHHH
Confidence 688888 89999999992 2221 4788888 588775333 34444 22222 234455666
Q ss_pred HHHHHHcCCC
Q 047474 114 IEIWIAVGMR 123 (326)
Q Consensus 114 ~~~~~A~G~d 123 (326)
++++...|+.
T Consensus 133 k~Ql~~lg~~ 142 (876)
T KOG0435|consen 133 KQQLKSLGIS 142 (876)
T ss_pred HHHHHHcCcc
Confidence 6777777754
No 130
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=78.71 E-value=12 Score=35.30 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=44.5
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhc
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKA 266 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA 266 (326)
++|....|..-++.+.+-+++++.++.. ...+..|.+... +| ..||+-+ .+|+....+....|-++
T Consensus 141 ~Pd~~~FG~kd~gq~~~Lk~~~~dl~~~--v~ii~~~~vr~~-dG-laiSSRN----~~Ls~~~r~~A~~l~~~ 206 (277)
T cd00560 141 QPDRAYFGEKDAQQLAVIRRMVRDLNLP--VEIVGCPTVREE-DG-LALSSRN----VYLSAEERKEALALYRA 206 (277)
T ss_pred CCCeEEECCCccccHHHHHHHHHHcCCe--EEEEcCCceecC-CC-ceEeCCC----CCCCHHHHHHHHHHHHH
Confidence 6786666777789999999999999852 223334555544 66 5898764 57777666665555444
No 131
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=78.51 E-value=2 Score=42.51 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=29.8
Q ss_pred EEEeccchhHHHHHHHHH-HHHhcCcCCcc-eeecCcccCCCCCCccccCCCCCCceecC
Q 047474 196 ICQLGMDQRKVNVLAREY-CDDIKRKNKPI-ILSHHMLPGLQQGQEKMSKSDPSSAIYME 253 (326)
Q Consensus 196 ~~~~G~DQ~~~~~lar~~-~~k~~~~~~p~-~l~~~~lp~L~~g~~KMSKS~~~s~I~L~ 253 (326)
+++.|.|-..++.+.--. ..-.+.. .|- ++.+.++. + +| +|||||. +++||..
T Consensus 285 v~~iGkDi~~fH~i~~pa~l~a~~~~-lP~~i~~~~~~~-~-~g-~K~SkS~-gn~i~~~ 339 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAMLLAAGLP-LPRRIVVHGFLT-L-DG-EKMSKSR-GNVIWPD 339 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHCTB----SEEEEE--EE-E-TT-CCEETTT-TESSBHH
T ss_pred EEEEccchhHHHHHHhHHHHhcccCC-CCCEEEeeeeEE-E-CC-eeccccC-CcccCHH
Confidence 789999986665543111 1113332 233 34455555 4 67 6999998 6899873
No 132
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=78.45 E-value=9.6 Score=35.90 Aligned_cols=115 Identities=18% Similarity=0.156 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHhhcc-------cccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHH
Q 047474 4 NSQNDEGSSTSTPQMSVEEKFRLVRSIGE-------ECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNK 76 (326)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~li~r~~~-------e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~ 76 (326)
+.-|+.|+=+++.++..+ +++|++.+. .|-+.+.+-...+.. ..+++.|+=||-.+|=+- -+.++...
T Consensus 51 ~~~n~dGtCKSa~~~~sD--Le~l~~~t~~IR~Y~sDCn~le~v~pAa~~~-g~kv~lGiw~tdd~~~~~--~~til~ay 125 (305)
T COG5309 51 GPYNDDGTCKSADQVASD--LELLASYTHSIRTYGSDCNTLENVLPAAEAS-GFKVFLGIWPTDDIHDAV--EKTILSAY 125 (305)
T ss_pred cccCCCCCCcCHHHHHhH--HHHhccCCceEEEeeccchhhhhhHHHHHhc-CceEEEEEeeccchhhhH--HHHHHHHH
Confidence 455777877776555554 999998763 344445555544432 357999999999999664 22332333
Q ss_pred HHHCCC-eEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 047474 77 LTSAGC-KVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTE 125 (326)
Q Consensus 77 lq~aG~-~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~ 125 (326)
++.-|- .|..++.+-+++-++. .+.+.+.++....+..+..+|.+..
T Consensus 126 ~~~~~~d~v~~v~VGnEal~r~~--~tasql~~~I~~vrsav~~agy~gp 173 (305)
T COG5309 126 LPYNGWDDVTTVTVGNEALNRND--LTASQLIEYIDDVRSAVKEAGYDGP 173 (305)
T ss_pred hccCCCCceEEEEechhhhhcCC--CCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 444454 3666666777776553 5677777777777777788898743
No 133
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=78.40 E-value=2 Score=44.02 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=38.7
Q ss_pred EEEeccchhHHHHHH-HHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 196 ICQLGMDQRKVNVLA-REYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 196 ~~~~G~DQ~~~~~la-r~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
+.+.|.|....+.+. --+..-.+....-.++.+.++. + +| +|||||. +|.|++.| .++.+|--+.
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~-~g-~KmSKS~-Gn~i~~~d~i~~~g~D~lR~~l~ 355 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-V-EG-GKMSKSL-GNVVDPSDLLARFGADILRYYLL 355 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-E-CC-ceecccC-CceecHHHHHHHcCchHHHHHHh
Confidence 889999998765332 1122333432111345566665 3 45 6999998 68998766 4455554443
No 134
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=78.32 E-value=2.4 Score=47.38 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=31.4
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEeccee
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFA 93 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a 93 (326)
.++.|. -|||.+|+||++-..+ .+.++++ .|+.|.+.-|-.|+
T Consensus 51 ~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~ 97 (1052)
T PRK14900 51 SIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHA 97 (1052)
T ss_pred EEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCcc
Confidence 488887 7899999999543333 3666776 59998888776655
No 135
>PLN02943 aminoacyl-tRNA ligase
Probab=78.12 E-value=2.7 Score=46.43 Aligned_cols=42 Identities=10% Similarity=0.057 Sum_probs=29.3
Q ss_pred EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEeccee
Q 047474 52 CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFA 93 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a 93 (326)
+..|. -+||.+|+||+....+ .+.++++ .|+.|.+..|=.|+
T Consensus 92 i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 137 (958)
T PLN02943 92 IPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHA 137 (958)
T ss_pred EecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcc
Confidence 66663 6799999999654433 3566666 59998887765555
No 136
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=77.88 E-value=17 Score=35.93 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=50.3
Q ss_pred EEEcccCCCCccchhhhhHH--HHHHHHHH-CCCeEEEEEecceeeecCC-------CCCCHHHH-HHHHHHHHHHHHHc
Q 047474 52 CYDGFEPSGRMHIAQGVMKA--ISVNKLTS-AGCKVKIWVADWFAQLNNK-------MGGDLKKI-QTVGRYLIEIWIAV 120 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~--~~~~~lq~-aG~~v~ilIaD~~a~~~~~-------~~~~~~~i-~~~~~~~~~~~~A~ 120 (326)
..||-=|=+.+||||..... -.+.++++ .|++|.++.+--. +++| .|.+++++ +++...+.+++.++
T Consensus 13 YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD--~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~L 90 (384)
T PRK12418 13 YVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTD--VDDPLLERAARDGVDWRDLAEREIALFREDMEAL 90 (384)
T ss_pred EecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCC--cchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 44565566799999942211 13555554 7988877743111 1222 13334333 44556677888999
Q ss_pred CC-CCCceEEEeCChhHHhhhhhhHHHHH
Q 047474 121 GM-RTERVEFLWSSEEINARADEYWPLVM 148 (326)
Q Consensus 121 G~-d~~k~~~~~~Sd~~~~~~~~~~~~~~ 148 (326)
|+ +|+ .+...|+.+ +....+|..+.
T Consensus 91 ni~~~~--~~~raTe~i-~~~~~~i~~L~ 116 (384)
T PRK12418 91 RVLPPR--DYVGAVESI-PEVVELVEKLL 116 (384)
T ss_pred CCCCCC--ccccCCCCH-HHHHHHHHHHH
Confidence 96 554 366666644 33334554443
No 137
>PLN02563 aminoacyl-tRNA ligase
Probab=77.50 E-value=8.2 Score=42.75 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=44.5
Q ss_pred eEEEcc-cCCCC-ccchhhhhHHH--HHHHHHH-CCCeEEEEEe-cceeeec-C---CCCCCH-HHHHHHHHHHHHHHHH
Q 047474 51 ICYDGF-EPSGR-MHIAQGVMKAI--SVNKLTS-AGCKVKIWVA-DWFAQLN-N---KMGGDL-KKIQTVGRYLIEIWIA 119 (326)
Q Consensus 51 ~iy~G~-~PTG~-lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa-D~~a~~~-~---~~~~~~-~~i~~~~~~~~~~~~A 119 (326)
.+..|+ -|+|. +|+||.....+ .+.++++ .|++|....| |-|++-- . +.+..+ +...++...++++++.
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 366687 77896 99999543322 3667776 5888766654 2233210 0 011122 2345566777889999
Q ss_pred cCCCCC
Q 047474 120 VGMRTE 125 (326)
Q Consensus 120 ~G~d~~ 125 (326)
+|+..|
T Consensus 193 lG~s~D 198 (963)
T PLN02563 193 LGFSYD 198 (963)
T ss_pred hCcEee
Confidence 996554
No 138
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=76.63 E-value=3 Score=45.59 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCe-EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEeccee
Q 047474 49 QPI-CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFA 93 (326)
Q Consensus 49 ~~~-iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a 93 (326)
+|. +..|. -+||.+|+||++-..+ .+.++++ .|+.|.+.-|=.|+
T Consensus 36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 85 (874)
T PRK05729 36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHA 85 (874)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCcc
Confidence 343 55555 6789999999654433 3666766 59888777665554
No 139
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=76.14 E-value=2.8 Score=40.85 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=42.9
Q ss_pred cCc--EEEeccchhHHHHHHHHHHHHhcCcC-Ccce--eecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHH
Q 047474 193 KAD--ICQLGMDQRKVNVLAREYCDDIKRKN-KPII--LSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKI 263 (326)
Q Consensus 193 ~~d--~~~~G~DQ~~~~~lar~~~~k~~~~~-~p~~--l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI 263 (326)
++| +-++|.||..|+.-...+++.+|... ..-+ +...++.+- +|..|||+.. ++.|.|.|=-++..++.
T Consensus 237 ~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~-~gk~~mstR~-G~~i~l~dllde~~~~a 310 (354)
T PF00750_consen 237 GFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLK-DGKVKMSTRK-GNVITLDDLLDEAVERA 310 (354)
T ss_dssp S-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEET-TBEESS-TTT-TSSTBHHHHHHHHHHHH
T ss_pred ccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcC-CCCccccCCC-CCceEHHHHHHHHHHHH
Confidence 455 56889999999999999999999621 1112 333344333 6623799997 68999876444333333
No 140
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=75.65 E-value=4.1 Score=44.10 Aligned_cols=41 Identities=15% Similarity=-0.035 Sum_probs=27.2
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecc
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADW 91 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~ 91 (326)
.+..|. -|||.+||||+....+ .+.++++ .|++|....|=.
T Consensus 41 ~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D 85 (800)
T PRK13208 41 SIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (800)
T ss_pred EEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcC
Confidence 366655 7889999999543332 3566666 588887766533
No 141
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.38 E-value=4.1 Score=42.46 Aligned_cols=66 Identities=21% Similarity=0.182 Sum_probs=46.6
Q ss_pred cCc--EEEeccchhHHHHHHHHHHHHhcCcCCc-ceeecC-cccCCCCCCccccCCCCCCceecCCCHHHHH
Q 047474 193 KAD--ICQLGMDQRKVNVLAREYCDDIKRKNKP-IILSHH-MLPGLQQGQEKMSKSDPSSAIYMEDEEAEVN 260 (326)
Q Consensus 193 ~~d--~~~~G~DQ~~~~~lar~~~~k~~~~~~p-~~l~~~-~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~ 260 (326)
++| +-+.|.||.+|+.-.+-+++.++..+.+ .++|.. .+...-+| .||||-. ++.|.|.|=-+++.
T Consensus 333 ~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g-~kmStR~-G~~vtl~dllde~~ 402 (577)
T COG0018 333 GFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEG-VKMSTRA-GNVVTLDDLLDEAG 402 (577)
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCC-ccccccC-CceEEHHHHHHHHH
Confidence 455 5578999999999999999999976443 334432 22222134 6899997 68999988655555
No 142
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=73.91 E-value=5.4 Score=41.42 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=42.3
Q ss_pred cCc--EEEeccchhHHHHHHHHHHHHhcCcCC--cceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 193 KAD--ICQLGMDQRKVNVLAREYCDDIKRKNK--PIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 ~~d--~~~~G~DQ~~~~~lar~~~~k~~~~~~--p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
++| +-++|.||..|+.-....++.+|.... -.++..-+|. + +| +||||.. ++.|.|.|
T Consensus 323 ~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~-~g-~kmStR~-G~~v~l~d 384 (562)
T PRK12451 323 GFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-K-DG-KKMSTRK-GRVVLLEE 384 (562)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-c-CC-CCCcCCC-CCeeEHHH
Confidence 455 568899999999999999999996421 1123334554 4 55 5999997 68899877
No 143
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=73.28 E-value=7.6 Score=42.42 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=27.9
Q ss_pred CeEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 50 PICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 50 ~~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
..++.|. -|||.+|+||....++ .+.+++. .|+.|....|
T Consensus 38 f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 38 FIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred eEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 3488888 6789999999654443 3666777 4877765554
No 144
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=72.20 E-value=20 Score=38.02 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=45.5
Q ss_pred cCC--CCccchh---hhhHHHHHHHHHH--CCCeEEEEEecceeee--cCC-------CCCC-HHH-HHHHHHHHHHHHH
Q 047474 57 EPS--GRMHIAQ---GVMKAISVNKLTS--AGCKVKIWVADWFAQL--NNK-------MGGD-LKK-IQTVGRYLIEIWI 118 (326)
Q Consensus 57 ~PT--G~lHLG~---~~~~~~~~~~lq~--aG~~v~ilIaD~~a~~--~~~-------~~~~-~~~-i~~~~~~~~~~~~ 118 (326)
.|| +.+|||| ++..- .++++.+ .|++|.++. .++ +|| .+.+ +.+ .+.+...+.+++.
T Consensus 67 GPTvYd~~HiGhart~v~~D-il~R~l~~~~Gy~V~~v~----nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~d~~ 141 (651)
T PTZ00399 67 GPTVYDSSHLGHARTYVTFD-IIRRILEDYFGYDVFYVM----NITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMK 141 (651)
T ss_pred CCCccCCcccccchHHHHHH-HHHHHHHHhcCCceEEEe----CCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 355 5999999 33332 3555554 699987773 222 232 1223 322 3445556677888
Q ss_pred HcCCCCCceEEEeCChhHHhhhhhhHHHH
Q 047474 119 AVGMRTERVEFLWSSEEINARADEYWPLV 147 (326)
Q Consensus 119 A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~ 147 (326)
++|+.+..+ +-.-++.+++. ..+|..+
T Consensus 142 ~Lni~~p~~-~~r~tehi~~i-i~~i~~L 168 (651)
T PTZ00399 142 ALNVRPPDV-ITRVSEYVPEI-VDFIQKI 168 (651)
T ss_pred HcCCCCCcc-ccCcCccHHHH-HHHHHHH
Confidence 999876532 33335534333 3455544
No 145
>PLN02843 isoleucyl-tRNA synthetase
Probab=69.45 E-value=13 Score=41.26 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=43.3
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEeccee-e---------ec--CCCCCCHHHHHHHHHHH-
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFA-Q---------LN--NKMGGDLKKIQTVGRYL- 113 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a-~---------~~--~~~~~~~~~i~~~~~~~- 113 (326)
.+..|. -+||.+||||++-..+ .+.+++. .|+.|.+..|=.|+ + ++ +....+.+++++.++++
T Consensus 35 ~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~ 114 (974)
T PLN02843 35 TLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFA 114 (974)
T ss_pred EEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHH
Confidence 366676 6789999999654443 2556666 58887655543332 1 11 11122445554444332
Q ss_pred -------HHHHHHcCC--CCCc
Q 047474 114 -------IEIWIAVGM--RTER 126 (326)
Q Consensus 114 -------~~~~~A~G~--d~~k 126 (326)
.+.++.+|+ |-++
T Consensus 115 ~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 115 KKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHhCCceecCC
Confidence 467788998 5544
No 146
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=69.34 E-value=4 Score=43.30 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=38.7
Q ss_pred EEEeccchhHHHHH---HHHHHHHhcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 196 ICQLGMDQRKVNVL---AREYCDDIKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 196 ~~~~G~DQ~~~~~l---ar~~~~k~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
+.+.|.|-..+|.+ |.-.+ .+.. -| .++.+.++.. +| +|||||. +|.|+..| .++.+|--+.+
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g~~-lP~~v~~hg~v~~--~G-~KMSKS~-GNvV~p~dlie~ygaDalR~~ll~ 358 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AGYR-LPTNVFAHGFLTV--EG-AKMSKSR-GTFIWARTYLDHLDPDYLRYYLAA 358 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CCCC-CCCEEeeeccEEe--cC-CcccccC-CcccCHHHHHHHcCchHHHHHHHh
Confidence 67899997665432 22222 3432 23 3455666664 56 6999998 68888765 55666655543
No 147
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=69.19 E-value=6.8 Score=40.99 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=25.2
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
.+..|. -+||.+|+||+.-..+ .+.+++. .|+.|.+..|
T Consensus 26 ~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G 68 (601)
T PF00133_consen 26 FIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPG 68 (601)
T ss_dssp EEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCC
Confidence 377777 7899999999655443 3666776 4888766654
No 148
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=68.75 E-value=45 Score=33.38 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=37.9
Q ss_pred hhhhhhhccccCcEEEeccchh-HHHHHHHHHHHH-hcC-cCCcceeecCcccCCCCCCccccCCCCCCceec
Q 047474 183 CMQCADIFFLKADICQLGMDQR-KVNVLAREYCDD-IKR-KNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYM 252 (326)
Q Consensus 183 ~lQaaD~~~l~~d~~~~G~DQ~-~~~~lar~~~~k-~~~-~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L 252 (326)
..|+...+--..|+.-||.|-. +|++--+-...- .+. ......+++-+| .. +| +|||||. +|.|.+
T Consensus 231 sam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l-~~-~G-~KMSKSl-GN~i~~ 299 (411)
T TIGR03447 231 SAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMI-GL-DG-EKMSKSL-GNLVFV 299 (411)
T ss_pred HHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEE-Cc-CC-CCccCcC-CCCCCH
Confidence 3444455445678999999954 666543333322 332 111233444444 55 67 7999998 577766
No 149
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=66.98 E-value=47 Score=31.51 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=49.1
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhc
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKA 266 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA 266 (326)
.++|....|.--+|-+.+.|.+.+.++.. --++..|.+..- ||= =||+-+ .||+....+....|-+|
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~~~--v~I~~~ptvRe~-dGL-A~SSRN----~~Ls~~eR~~A~~l~~~ 208 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLFLD--IEIVPVPIVREE-DGL-ALSSRN----VYLTAEQRKIAPGLYRA 208 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcCCC--ceEEEeCceECC-CCC-chhhcc----ccCCHHHHHHHHHHHHH
Confidence 37888888888899999999999999953 234556888887 773 677553 68887766666666554
No 150
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.74 E-value=3.3 Score=44.65 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 206 VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 206 ~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
.++|+.++..++= ++ -++.||||.+- .| .|||||- +|.|.-.|
T Consensus 564 MvmLg~kLtG~lP--F~-~V~LH~mVRDa-~G-RKMSKSL-GNVIDPlD 606 (995)
T KOG0432|consen 564 MVMLGLKLTGELP--FK-EVLLHGLVRDA-HG-RKMSKSL-GNVIDPLD 606 (995)
T ss_pred HHHhhhhhcCCCC--ch-heeechhhccc-cc-cccchhh-ccccCHHH
Confidence 3455555543221 11 25778999999 57 6999998 57776554
No 151
>PLN02381 valyl-tRNA synthetase
Probab=64.64 E-value=6.2 Score=44.17 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=30.3
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEeccee
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFA 93 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a 93 (326)
.+.+|. -+||.+|+||+...++ .+.++++ .|+.|.+..|=.|+
T Consensus 131 ~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~ 177 (1066)
T PLN02381 131 VIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHA 177 (1066)
T ss_pred EEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCC
Confidence 477777 7899999999544333 3666766 58888777765554
No 152
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=63.86 E-value=9.5 Score=37.17 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEcccCCCCccchhhhhHHH--HHHH-HHHCCCeEEE
Q 047474 52 CYDGFEPSGRMHIAQGVMKAI--SVNK-LTSAGCKVKI 86 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~~--~~~~-lq~aG~~v~i 86 (326)
=|+.--|||.+|+||+=...+ -+.+ +..+|++|+-
T Consensus 25 E~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r 62 (354)
T PF00750_consen 25 EFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTR 62 (354)
T ss_dssp EE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred EecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeee
Confidence 378889999999999321111 2444 4457998753
No 153
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.49 E-value=9.1 Score=40.82 Aligned_cols=53 Identities=28% Similarity=0.235 Sum_probs=33.9
Q ss_pred CcEEEeccchh-HHHH--HHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCce
Q 047474 194 ADICQLGMDQR-KVNV--LAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI 250 (326)
Q Consensus 194 ~d~~~~G~DQ~-~~~~--lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I 250 (326)
+|+++=|.||. +-|. |-..+|-+-..+|+ .++.|.+.-+= .| .|||||- +|.|
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk-~vivHGFtlDE-~G-~KMSKSl-GNVi 622 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYK-KVIVHGFTLDE-NG-NKMSKSL-GNVV 622 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhccCCch-heeeeeeEecC-Cc-cchhhcc-cCcC
Confidence 68999999995 3333 22334443333444 35667777776 66 6999998 4655
No 154
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.00 E-value=6.5 Score=40.82 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=34.9
Q ss_pred EEEeccchhHHHHHHHH-HHHHhcCcCCcceee-cCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 196 ICQLGMDQRKVNVLARE-YCDDIKRKNKPIILS-HHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 196 ~~~~G~DQ~~~~~lar~-~~~k~~~~~~p~~l~-~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
+.++|.|-..+|.+-=- +.--.+. +.|.-+. +-.|.- +| +|||||. ++.||..+ +++.+|=-+.+
T Consensus 291 vhfIGKDii~FHav~wPamL~~~~~-~lP~~i~ahg~l~~--~G-~KmSKSr-G~~V~~~~~~~~~~~D~lRYyL~~ 362 (558)
T COG0143 291 VHFIGKDIIRFHAVYWPAMLMAAGL-PLPTRIFAHGFLTL--EG-QKMSKSR-GNVVDPDELLEQYGVDALRYYLAR 362 (558)
T ss_pred EEEeccccCcchhhHHHHHHHhCCC-CCCCEEEeeeeEEE--CC-ccccccC-CcEEeHHHHHHHcCchHhHHHHHH
Confidence 67889996544443210 0111111 1343332 333332 56 5999998 68898766 55666655544
No 155
>PLN02610 probable methionyl-tRNA synthetase
Probab=60.57 E-value=8.8 Score=41.66 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=38.4
Q ss_pred EEEeccchhHHHHHH-HHHHHHhcCc-CCcc-eeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHhc
Q 047474 196 ICQLGMDQRKVNVLA-REYCDDIKRK-NKPI-ILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKKA 266 (326)
Q Consensus 196 ~~~~G~DQ~~~~~la-r~~~~k~~~~-~~p~-~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~kA 266 (326)
+.++|.|-..+|.+. =-+.--.+.. +.|. ++.|.++. . +| +|||||. +|.|+..| .++.+|--+.+.
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~-~-eG-~KMSKS~-GNvV~p~~~i~~~yg~D~lRyyLl~~ 379 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYLN-Y-EG-GKFSKSK-GVGVFGNDAKDTNIPVEVWRYYLLTN 379 (801)
T ss_pred EEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCEe-c-CC-ceecCcC-CcccCHHHHHhccCCchHhHHHhhhc
Confidence 789999976666432 1111112321 1233 33455553 3 67 6999998 68888654 355666666654
No 156
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=60.34 E-value=11 Score=39.28 Aligned_cols=40 Identities=28% Similarity=0.542 Sum_probs=26.0
Q ss_pred EEEcccCCCCccchhhhhHHH--HHHHHHH-CCCeEE--EEEecc
Q 047474 52 CYDGFEPSGRMHIAQGVMKAI--SVNKLTS-AGCKVK--IWVADW 91 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~--ilIaD~ 91 (326)
=|++--|+|.+|+||+-...+ -+.++.+ .|++|+ ..|+||
T Consensus 117 e~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~ 161 (566)
T TIGR00456 117 EFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDW 161 (566)
T ss_pred EecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecch
Confidence 578889999999999422211 2444444 788874 556665
No 157
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.14 E-value=8.8 Score=41.81 Aligned_cols=57 Identities=28% Similarity=0.310 Sum_probs=33.2
Q ss_pred CcEEEeccchhHHHHHHHHHHHHhcCc-CCcc--eeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 194 ADICQLGMDQRKVNVLAREYCDDIKRK-NKPI--ILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 194 ~d~~~~G~DQ~~~~~lar~~~~k~~~~-~~p~--~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
.++-+-|-|= =++=.+|-+...+... ..|+ ++-|.++.+- +| .|||||. +|.|...|
T Consensus 479 t~llvtG~DI-IffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe-~G-~KMSKS~-GNvIDP~d 538 (877)
T COG0525 479 TDLLVTGHDI-IFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDE-QG-RKMSKSK-GNVIDPLD 538 (877)
T ss_pred Cccccccchh-hHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcC-CC-CCCcccC-CCcCCHHH
Confidence 3455566663 2223444444433321 1343 3557888888 67 6999998 68776554
No 158
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=59.29 E-value=69 Score=27.52 Aligned_cols=73 Identities=10% Similarity=0.034 Sum_probs=35.4
Q ss_pred EEEc-ccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 047474 52 CYDG-FEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFL 130 (326)
Q Consensus 52 iy~G-~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~ 130 (326)
+|.| |+| +|+||..+. .+..+.--+++++++............+.++-.++ +.+.+...|++.+++.++
T Consensus 3 v~~G~FdP---~H~GHl~~i----~~a~~~~d~l~v~v~s~~~~~~~~~~~~~~~R~~m---i~~~~~~~~~~~~~v~v~ 72 (163)
T cd02166 3 LFIGRFQP---FHLGHLKVI----KWILEEVDELIIGIGSAQESHTLENPFTAGERVLM---IRRALEEEGIDLSRYYII 72 (163)
T ss_pred EEeeccCC---CCHHHHHHH----HHHHHHCCEEEEEecCCCCCCCCCCCCCHHHHHHH---HHHHHHhcCCCcCeEEEE
Confidence 4444 477 999995322 22222223566666433322111111233332222 222334446777788888
Q ss_pred eCCh
Q 047474 131 WSSE 134 (326)
Q Consensus 131 ~~Sd 134 (326)
...|
T Consensus 73 ~~~d 76 (163)
T cd02166 73 PVPD 76 (163)
T ss_pred ecCC
Confidence 7766
No 159
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.01 E-value=6.7 Score=39.95 Aligned_cols=79 Identities=20% Similarity=0.132 Sum_probs=49.3
Q ss_pred hhhhhhhhccccCcEEEeccchh-HHH--HHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC----
Q 047474 182 PCMQCADIFFLKADICQLGMDQR-KVN--VLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED---- 254 (326)
Q Consensus 182 P~lQaaD~~~l~~d~~~~G~DQ~-~~~--~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D---- 254 (326)
...||.+++-.+.||--||.|=. ||+ ++|.--|.=-....--..+|+.-|.- .| .|||||- +|.|=+-+
T Consensus 247 CSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i--~g-~KMSKSL-kNFiTIke~Lk~ 322 (586)
T KOG2007|consen 247 CSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTI--NG-EKMSKSL-KNFITIKEALKK 322 (586)
T ss_pred eHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcCeeee--cc-chhhhhh-ccceeHHHHHHh
Confidence 46789999999999999999954 554 45544433222111224677655544 35 7999998 57776643
Q ss_pred -CHHHHHHHHH
Q 047474 255 -EEAEVNVKIK 264 (326)
Q Consensus 255 -~~~~i~~KI~ 264 (326)
+|.+++--.+
T Consensus 323 ~sp~qLRl~fl 333 (586)
T KOG2007|consen 323 YSPRQLRLAFL 333 (586)
T ss_pred cCHHHHHHHHH
Confidence 4555554443
No 160
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.56 E-value=9.6 Score=41.31 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=27.4
Q ss_pred CCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecceeee
Q 047474 59 SGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFAQL 95 (326)
Q Consensus 59 TG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a~~ 95 (326)
||++||||.+...+ .+.++.+ .|.++-.+-+=.||=+
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI 126 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI 126 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch
Confidence 89999999655443 3555655 5999888888888744
No 161
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.12 E-value=14 Score=38.54 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=26.1
Q ss_pred EEEcccCCCCccchhhhhHHH--HHHHH-HHCCCeEE--EEEeccee
Q 047474 52 CYDGFEPSGRMHIAQGVMKAI--SVNKL-TSAGCKVK--IWVADWFA 93 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~~--~~~~l-q~aG~~v~--ilIaD~~a 93 (326)
=|+.--|||.||+||+=...+ -+.++ .-.|++|+ ..|.||=.
T Consensus 122 E~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~ 168 (577)
T COG0018 122 EYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGT 168 (577)
T ss_pred EEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHH
Confidence 378889999999999321111 24444 44798874 44555533
No 162
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=55.71 E-value=9.8 Score=42.22 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=27.7
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
.++.|. -|||.+|+||.+..++ .+.+++. .|+.|....|
T Consensus 44 ~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 44 VFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred EEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 488888 7899999999654443 3666766 5887765544
No 163
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=54.21 E-value=11 Score=41.64 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=28.0
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecce
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWF 92 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~ 92 (326)
.+..|. -+||.+|+||.+-..+ .+.++++ .|+.|.+..|-.|
T Consensus 52 ~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~ 97 (912)
T PRK05743 52 ILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDC 97 (912)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCC
Confidence 366677 6789999999654433 3666776 5888766555433
No 164
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=54.20 E-value=9.6 Score=42.11 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=26.5
Q ss_pred CeEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEE
Q 047474 50 PICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWV 88 (326)
Q Consensus 50 ~~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilI 88 (326)
..+..|. -|||.+|+||+....+ -+.++++ .|++|.+..
T Consensus 27 f~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~ 69 (938)
T TIGR00395 27 FFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPL 69 (938)
T ss_pred eEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCC
Confidence 3477777 7889999999543332 3667777 487775544
No 165
>PLN02286 arginine-tRNA ligase
Probab=53.88 E-value=15 Score=38.28 Aligned_cols=38 Identities=21% Similarity=0.457 Sum_probs=24.5
Q ss_pred EEcccCCCCccchhh---hhHHHHHHH-HHHCCCeEE--EEEecc
Q 047474 53 YDGFEPSGRMHIAQG---VMKAISVNK-LTSAGCKVK--IWVADW 91 (326)
Q Consensus 53 y~G~~PTG~lHLG~~---~~~~~~~~~-lq~aG~~v~--ilIaD~ 91 (326)
|+.--|||.+|+||+ ++=- -+.+ +.-+|++|+ ..|+||
T Consensus 123 fsSpNp~kplHvGHlRsaiiGd-sLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGD-TLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred ecCCCCCCCCccccccchhhHH-HHHHHHHHcCCceEEEEeecch
Confidence 778899999999993 1111 2444 444798874 445555
No 166
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=53.75 E-value=16 Score=38.02 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=24.3
Q ss_pred EEcccCCCCccchhhhhHHH--HHHH-HHHCCCeEE--EEEecc
Q 047474 53 YDGFEPSGRMHIAQGVMKAI--SVNK-LTSAGCKVK--IWVADW 91 (326)
Q Consensus 53 y~G~~PTG~lHLG~~~~~~~--~~~~-lq~aG~~v~--ilIaD~ 91 (326)
|+.--|||.+|+||+=-..+ -+.+ +.-.|++|+ ..|+||
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~ 162 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDW 162 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCc
Confidence 77889999999999311111 2444 444798874 344444
No 167
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=53.16 E-value=49 Score=31.33 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=46.3
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhc
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKA 266 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA 266 (326)
.++|.+..|.--.|-+.+.|.+.+.+|.. --++..|.+..- ||- =||+- ..||+.......-.+-+|
T Consensus 141 v~Pd~AyFGeKD~QQl~vIr~mV~DL~~~--VeIv~vptVRe~-DGL-A~SSR----N~YLs~eeR~~A~~L~~~ 207 (285)
T COG0414 141 VQPDRAYFGEKDYQQLAVIRRMVADLNLP--VEIVGVPTVREE-DGL-ALSSR----NVYLSAEERKAAPALYRA 207 (285)
T ss_pred cCCCeeeeccchHHHHHHHHHHHHHcCCC--eEEEecceeEcC-Ccc-chhhc----cccCCHHHHHHHHHHHHH
Confidence 36788777877788899999999999952 224556888877 774 45544 378887665555444443
No 168
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=52.17 E-value=12 Score=41.42 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=27.3
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
.+..|. -++|.+|+||++...+ .+.+++. .|+.|....|
T Consensus 57 ~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pG 99 (961)
T PRK13804 57 VLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPG 99 (961)
T ss_pred EEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 477777 7889999999655543 3666776 5887755543
No 169
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=47.15 E-value=18 Score=41.04 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=27.1
Q ss_pred EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 52 CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
++.|- -+||.+|+||.+-.++ .+.+++. .|++|....|
T Consensus 106 ~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~G 147 (1205)
T PTZ00427 106 FYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFG 147 (1205)
T ss_pred EecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCc
Confidence 68887 7889999999554433 3666666 5888766554
No 170
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=45.67 E-value=1e+02 Score=29.85 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=36.1
Q ss_pred EEEcc-cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecce-eee-cCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 52 CYDGF-EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWF-AQL-NNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~-a~~-~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
+|.|. +| +|+||..+ +.+..+..-+++|+++... +.. .++ .+.++-.+.. +..++ +++..++.
T Consensus 10 ~~~G~F~P---~H~GHl~~----i~~a~~~~d~l~v~i~s~~~~~~~~~~--~~~~~R~~mi----~~~~~-~~~~~r~~ 75 (340)
T PRK05379 10 VFIGRFQP---FHNGHLAV----IREALSRAKKVIVLIGSADLARSIKNP--FSFEERAQMI----RAALA-GIDLARVT 75 (340)
T ss_pred EEeeccCC---CCHHHHHH----HHHHHHHCCEEEEEEccCCCCCcCCCC--CCHHHHHHHH----HHHhh-cCCCceEE
Confidence 66664 88 89999432 2222232247888887432 111 222 3444333322 22222 67777887
Q ss_pred EEeCCh
Q 047474 129 FLWSSE 134 (326)
Q Consensus 129 ~~~~Sd 134 (326)
|+-=.|
T Consensus 76 ~~pi~d 81 (340)
T PRK05379 76 IRPLRD 81 (340)
T ss_pred EEECCC
Confidence 776555
No 171
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=45.05 E-value=41 Score=31.00 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=45.4
Q ss_pred ccCHHHHHHHHhc----CCCCeE-EE-cccCCC-CccchhhhhHHH---HHHHHHHCCCeEEEEEecceeeecCCCCCCH
Q 047474 34 CIQEDELLNLLTK----KPQPIC-YD-GFEPSG-RMHIAQGVMKAI---SVNKLTSAGCKVKIWVADWFAQLNNKMGGDL 103 (326)
Q Consensus 34 ~~~~~eL~~lL~~----~~~~~i-y~-G~~PTG-~lHLG~~~~~~~---~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~ 103 (326)
.+.++||..+-.- .++|.. ++ |+++|. ++ |||+.... .-.++....+.|+++++|=+=- -|..|
T Consensus 86 ~~p~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSL--GqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~----EG~~W 159 (243)
T COG3959 86 YFPEEELETFRRIGSRLPGHPERNKTPGVEVSTGSL--GQGLSVAVGMALGAKLKGSPYRVYVILGDGELD----EGQVW 159 (243)
T ss_pred CCCHHHHHHhccCCCcCCCCCccCCCCceeecCCcc--cccchHHHHHHHHHhhcCCCceEEEEecCcccc----cccHH
Confidence 5788999876542 457763 77 999886 74 56433322 1233444557899999997622 25567
Q ss_pred HHHHHHHHH
Q 047474 104 KKIQTVGRY 112 (326)
Q Consensus 104 ~~i~~~~~~ 112 (326)
|.+...+.|
T Consensus 160 EAam~Aah~ 168 (243)
T COG3959 160 EAAMTAAHY 168 (243)
T ss_pred HHHHHHHHh
Confidence 776555443
No 172
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=43.47 E-value=52 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=28.1
Q ss_pred cCCCCceeEeecccCCCCceecCHHHHHHHHH
Q 047474 287 FPWDKKFVVERSEANGGNKTFETMKNLLLIMK 318 (326)
Q Consensus 287 fp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~ 318 (326)
|+....|+++...+.|-+.+++|-+||+.+|.
T Consensus 35 ~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~r 66 (83)
T cd06404 35 FHNDQPFTLKWIDEEGDPCTISSQMELEEAFR 66 (83)
T ss_pred CCCCCcEEEEEECCCCCceeecCHHHHHHHHH
Confidence 35556899999999999999999999999984
No 173
>PLN02882 aminoacyl-tRNA ligase
Probab=41.66 E-value=23 Score=40.10 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=27.8
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
.+|.|- -+||.+|+||.+-.++ .+.+++. .|++|....|
T Consensus 41 ~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~G 83 (1159)
T PLN02882 41 IFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFG 83 (1159)
T ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCc
Confidence 488887 7889999999554433 3666776 5888766554
No 174
>PLN02660 pantoate--beta-alanine ligase
Probab=41.52 E-value=1.5e+02 Score=28.21 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=49.7
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhc
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKA 266 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA 266 (326)
.++|....|.--+|-+.+.|.+.+.++.. --++..|.+..- || ==||+-+ .||+++..+....|-+|
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~~--v~I~~~ptvRe~-dG-LA~SSRN----~yLs~~eR~~A~~l~~~ 211 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDFD--IEVVGSPIVREA-DG-LAMSSRN----VRLSAEEREKALSISRS 211 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCCC--ceEEeeCceECC-CC-Ceecccc----ccCCHHHHHHHHHHHHH
Confidence 37888888888899999999999999953 224556888887 77 3677653 68888776666666554
No 175
>PLN02959 aminoacyl-tRNA ligase
Probab=39.41 E-value=19 Score=40.55 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=22.3
Q ss_pred cCCCCccchhhhhHHH--HHHHHHHC-CCeEEEEEecce
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTSA-GCKVKIWVADWF 92 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~a-G~~v~ilIaD~~ 92 (326)
-++|.|||||+.-... -+.+++++ |+.|.+. -+||
T Consensus 55 Y~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp-~G~d 92 (1084)
T PLN02959 55 YMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLP-FAFH 92 (1084)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCC-CCcC
Confidence 3478999999654433 36677774 7665443 4555
No 176
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=38.93 E-value=1.8e+02 Score=23.91 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=36.5
Q ss_pred HCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCh
Q 047474 79 SAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 134 (326)
Q Consensus 79 ~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd 134 (326)
+.|.+-+++++.-..-=... .-....+++.....+.+...|++|+++.+.+-|.
T Consensus 50 ~~GADGV~V~gC~~g~Ch~~--~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 50 EKGADGVLVAGCHPGDCHYR--EGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred HcCCCEEEEeCCCCCCCCcc--hhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 56888888877653211010 1124566677777888899999999999987654
No 177
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=36.97 E-value=49 Score=29.71 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=22.5
Q ss_pred eEEEcc-cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEeccee
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFA 93 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a 93 (326)
.+|.|. || +|+||.-.. ..-+.++. +++|.||-...
T Consensus 7 ~v~iGRFQP---fH~GHl~~I---~~al~~~d-evII~IGSA~~ 43 (196)
T PRK13793 7 LVFIGRFQP---FHLAHMQTI---EIALQQSR-YVILALGSAQM 43 (196)
T ss_pred EEEEecCCC---CcHHHHHHH---HHHHHhCC-EEEEEEccCCC
Confidence 377775 88 899994321 12244443 78888876443
No 178
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.18 E-value=1.7e+02 Score=29.73 Aligned_cols=89 Identities=15% Similarity=0.297 Sum_probs=52.5
Q ss_pred ccCCCCccchhhh--hHHHHHHHHHHCCCeEEEEEe--cceeeecC----CCCCC-HHHHHHHHHHHHHHHHHcCCCCCc
Q 047474 56 FEPSGRMHIAQGV--MKAISVNKLTSAGCKVKIWVA--DWFAQLNN----KMGGD-LKKIQTVGRYLIEIWIAVGMRTER 126 (326)
Q Consensus 56 ~~PTG~lHLG~~~--~~~~~~~~lq~aG~~v~ilIa--D~~a~~~~----~~~~~-~~~i~~~~~~~~~~~~A~G~d~~k 126 (326)
|-|.+.+||||+- +..-.+.++|..-.+.+|+.. |-|+.--. --|.+ ++-..++...++..++++|+.-
T Consensus 48 fYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~y-- 125 (578)
T KOG0436|consen 48 FYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAY-- 125 (578)
T ss_pred eecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcch--
Confidence 3678899999931 222257788885333444432 44443110 00233 3455667778889999999976
Q ss_pred eEEEeCChhHHhh---hhhhHHHHH
Q 047474 127 VEFLWSSEEINAR---ADEYWPLVM 148 (326)
Q Consensus 127 ~~~~~~Sd~~~~~---~~~~~~~~~ 148 (326)
+.|++..| - .| -..||..+.
T Consensus 126 t~FIRTTd-p-kH~a~Vqefw~~~~ 148 (578)
T KOG0436|consen 126 TKFIRTTD-P-KHEAIVQEFWARVF 148 (578)
T ss_pred hheeecCC-c-hHHHHHHHHHHHHH
Confidence 45887766 2 22 246787764
No 179
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=35.49 E-value=1.1e+02 Score=25.06 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=45.1
Q ss_pred CHHHHHHHHHhh---cccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEE
Q 047474 19 SVEEKFRLVRSI---GEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIW 87 (326)
Q Consensus 19 ~~~~~~~li~r~---~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~il 87 (326)
.++.|..-+.+. +-..+..+||+.+|++. .-.+..|..-+|.+-++--+ ...+.+.||.|+.+
T Consensus 30 ~v~rr~K~lskrK~GTSHkl~~eEle~~lee~-~E~ivvGTG~~G~l~l~~ea-----~e~~r~k~~~vi~~ 95 (121)
T COG1504 30 KVERREKELSKRKYGTSHKLALEELEELLEEG-PEVIVVGTGQSGMLELSEEA-----REFFRKKGCEVIEL 95 (121)
T ss_pred ceehhhhhhhhhhcCcccccCHHHHHHHHhcC-CcEEEEecCceeEEEeCHHH-----HHHHHhcCCeEEEe
Confidence 355566556543 66788999999999863 23599999999998887532 22255678998776
No 180
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=34.34 E-value=1.7e+02 Score=26.64 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=41.4
Q ss_pred EEEcccCCCCccchhhhhH-HHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 047474 52 CYDGFEPSGRMHIAQGVMK-AISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~-~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~ 124 (326)
.+.+++++|.+++...... .-.+...++.|.++.+.|+.+..-.....-.+.+..++.+...++.+...|+|-
T Consensus 29 ~f~~i~~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~DG 102 (253)
T cd06545 29 AFANPDANGTLNANPVRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNLDG 102 (253)
T ss_pred EEEEECCCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 5567788998888531111 111334556789999999987532111111244444445566666677776653
No 181
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=32.50 E-value=2.1e+02 Score=26.37 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=45.3
Q ss_pred EEEcccCCCCccchhhh------hHHH-HHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 047474 52 CYDGFEPSGRMHIAQGV------MKAI-SVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~------~~~~-~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~ 124 (326)
.+.++.++|.+|+..-. .... .+..+|..|.+|.+-|++|..-.-...-.+.+..++.+......+...|||-
T Consensus 36 af~~i~~~G~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DG 115 (256)
T cd06546 36 AALHINDDGNIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDG 115 (256)
T ss_pred EEEEECCCCeEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 56688888888775310 0111 3556778899999999998621101111244444444555556666777764
Q ss_pred CceEEEe
Q 047474 125 ERVEFLW 131 (326)
Q Consensus 125 ~k~~~~~ 131 (326)
+-|-|
T Consensus 116 --iDiDw 120 (256)
T cd06546 116 --LDLDV 120 (256)
T ss_pred --eEEee
Confidence 44544
No 182
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=31.85 E-value=29 Score=34.28 Aligned_cols=37 Identities=19% Similarity=0.031 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCcCCcceeecC---cccCCCCCCccccC
Q 047474 205 KVNVLAREYCDDIKRKNKPIILSHH---MLPGLQQGQEKMSK 243 (326)
Q Consensus 205 ~~~~lar~~~~k~~~~~~p~~l~~~---~lp~L~~g~~KMSK 243 (326)
.-.+++|++.++.... .|+.+..+ ..+|.+.| .|||.
T Consensus 193 ~g~dLar~~~~~~~~~-~t~pLl~~~dg~KmgKS~~-~~i~l 232 (377)
T TIGR00234 193 KGRDLIRRNLPSLGFG-LTVPLLTPADGEKMGKSGG-GAVSL 232 (377)
T ss_pred HHHHHHHHhcCCCcee-eceeeecCCCCCCccCCCC-CcccC
Confidence 3456777777665543 45555555 78888544 46665
No 183
>COG3060 MetJ Transcriptional regulator of met regulon [Transcription / Amino acid transport and metabolism]
Probab=31.33 E-value=41 Score=25.99 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=23.7
Q ss_pred ceeeecCCCCCCHHHHHHHH----HHHHHHHHHcCCCCCc
Q 047474 91 WFAQLNNKMGGDLKKIQTVG----RYLIEIWIAVGMRTER 126 (326)
Q Consensus 91 ~~a~~~~~~~~~~~~i~~~~----~~~~~~~~A~G~d~~k 126 (326)
+||+++.|..-+.+-.+++. ......+..+|+||++
T Consensus 63 lhaftgqplptd~dl~ker~deipe~ak~~mrelgidpe~ 102 (105)
T COG3060 63 LHAFTGQPLPTDADLRKERSDEIPEAAKEIMRELGIDPET 102 (105)
T ss_pred HHHHcCCCCCCcHHHHHhccccchHHHHHHHHHhCCCccc
Confidence 59999988665555444433 2334556788999975
No 184
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=31.21 E-value=2.1e+02 Score=24.95 Aligned_cols=72 Identities=11% Similarity=0.040 Sum_probs=34.0
Q ss_pred EEEc-ccCCCCccchhhhhHHHHHHHHHHCCC-eEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 047474 52 CYDG-FEPSGRMHIAQGVMKAISVNKLTSAGC-KVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEF 129 (326)
Q Consensus 52 iy~G-~~PTG~lHLG~~~~~~~~~~~lq~aG~-~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~ 129 (326)
+|.| |+| +|+||..+ +.+..+ .+ +++++++-...........+.+ ++.+-+.+.+...+++.+++.+
T Consensus 4 l~~G~F~P---~H~GHl~~----i~~a~~-~~d~v~v~i~s~~~~~~~~~p~~~~---~R~~mi~~a~~~~~~~~~~~~~ 72 (174)
T PRK01153 4 LFIGRFQP---FHKGHLEV----IKWILE-EVDELIIGIGSAQESHTLKNPFTAG---ERILMIRKALEEEGIDLSRYYI 72 (174)
T ss_pred EEeeccCC---CCHHHHHH----HHHHHH-hCCEEEEEecCCCCCCCCCCCCCHH---HHHHHHHHHHhcCCCCcceeeE
Confidence 4555 477 99999432 223333 34 4666665332211111012333 2222223333445666667777
Q ss_pred EeCCh
Q 047474 130 LWSSE 134 (326)
Q Consensus 130 ~~~Sd 134 (326)
+--.|
T Consensus 73 ~pi~D 77 (174)
T PRK01153 73 IPIPD 77 (174)
T ss_pred ecCCC
Confidence 76555
No 185
>PRK05370 argininosuccinate synthase; Validated
Probab=29.12 E-value=3.4e+02 Score=27.54 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCCh
Q 047474 73 SVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 134 (326)
Q Consensus 73 ~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd 134 (326)
.+.||++.|++|+.+.||+ |.+.+.+++.+++.+ +++|.+ ++.++.--+
T Consensus 27 ~l~wL~e~~~eVia~~aDv----GQ~~~ed~~~i~~kA-------~~~GA~--~~~viDlr~ 75 (447)
T PRK05370 27 ALLWMRQKGAVPYAYTANL----GQPDEDDYDAIPRRA-------MEYGAE--NARLIDCRA 75 (447)
T ss_pred HHHHHHhcCCeEEEEEEEC----CCCCccchHHHHHHH-------HHhCCC--EEEEeccHH
Confidence 3667877799999996665 332123566666654 667764 456665444
No 186
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=28.07 E-value=3e+02 Score=23.67 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=34.0
Q ss_pred HHHHHHC--CCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 047474 74 VNKLTSA--GCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 74 ~~~lq~a--G~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~ 124 (326)
+..+++. |.++.+.++++..-.....-.+.+..++.+..+++.+...|+|-
T Consensus 55 i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DG 107 (210)
T cd00598 55 LEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDG 107 (210)
T ss_pred HHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCc
Confidence 5566665 99999999987754321112355566666777777778887764
No 187
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=26.32 E-value=1.9e+02 Score=26.25 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=35.4
Q ss_pred HHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 047474 74 VNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 74 ~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~ 124 (326)
+..+|+.|.+|++.|+.++--.+-....+.+..++.+..++..+...|+|-
T Consensus 57 i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yglDG 107 (255)
T cd06542 57 IRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYGLDG 107 (255)
T ss_pred HHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 555778899999999988743221012355667777788888888887764
No 188
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=25.85 E-value=2.7e+02 Score=27.75 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=42.5
Q ss_pred cCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCe-EEEEEecceeeecC
Q 047474 35 IQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCK-VKIWVADWFAQLNN 97 (326)
Q Consensus 35 ~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~-v~ilIaD~~a~~~~ 97 (326)
.++-||++++.+. +--....|+-...+|=||.++..-.-.++.+.|++ +++|+--+-.++.|
T Consensus 401 ~tp~elk~~f~e~-nadavfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkd 463 (627)
T KOG4238|consen 401 LTPLELKQKFKEM-NADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKD 463 (627)
T ss_pred CCHHHHHHHHHhh-CcceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccC
Confidence 5788999999764 34477789999999999965432245567777875 56665555555544
No 189
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.30 E-value=2e+02 Score=29.32 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=36.1
Q ss_pred CeEE-EcccCCCCccchhh---hhHHHHHHHHHHCCCeEEEEEecceeeecCCC-------CCCHHHH-HHHHHHHHHHH
Q 047474 50 PICY-DGFEPSGRMHIAQG---VMKAISVNKLTSAGCKVKIWVADWFAQLNNKM-------GGDLKKI-QTVGRYLIEIW 117 (326)
Q Consensus 50 ~~iy-~G~~PTG~lHLG~~---~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~-------~~~~~~i-~~~~~~~~~~~ 117 (326)
..+| ||.-+-...||||+ +.+-+..+.|+..|+.| ..+-..|-. +||. |.++.++ ......+.+++
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V-~yV~NiTDI-DDKIi~rA~~~g~~~~ev~~~~i~~f~~D~ 100 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKV-TYVRNITDI-DDKIINRAREEGLSIREVAERYIAAFFEDM 100 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeE-EEEeccccc-cHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3444 56555569999993 33322233455679874 333333332 3321 2233222 22334445667
Q ss_pred HHcCCC
Q 047474 118 IAVGMR 123 (326)
Q Consensus 118 ~A~G~d 123 (326)
.|+|+-
T Consensus 101 ~aL~v~ 106 (464)
T COG0215 101 DALNVL 106 (464)
T ss_pred HHhCCC
Confidence 788873
No 190
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=24.22 E-value=2.4e+02 Score=24.81 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=36.5
Q ss_pred EEEcc-cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEeccee-e-ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 52 CYDGF-EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFA-Q-LNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a-~-~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
+|.|. +| +|.||.- .++. -+.+.+ +++|+|+=... . +-||. ...+...-+.+.+.-.|+++ ++.
T Consensus 7 v~~GRFqP---~H~GHl~--vi~~-al~~vD-eliI~iGSa~~~~t~~nPf-----TagER~~mi~~~L~~~~~~~-r~~ 73 (172)
T COG1056 7 VYFGRFQP---LHTGHLY--VIKR-ALSKVD-ELIIVIGSAQESHTLKNPF-----TAGERIPMIRDRLREAGLDL-RVY 73 (172)
T ss_pred EEEeccCC---ccHhHHH--HHHH-HHHhCC-EEEEEEccCcccccccCCC-----CccchhHHHHHHHHhcCCCc-eEE
Confidence 77775 77 9999942 2222 244433 66777664322 1 12331 11222222234556678888 877
Q ss_pred EEeCCh
Q 047474 129 FLWSSE 134 (326)
Q Consensus 129 ~~~~Sd 134 (326)
+.---|
T Consensus 74 ~~~v~d 79 (172)
T COG1056 74 LRPVFD 79 (172)
T ss_pred EEecCc
Confidence 765555
No 191
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.27 E-value=45 Score=36.86 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCCCe--EEEcc-cCCCCccchhhhhHHHH--HHHHHH-CCCeEEEE
Q 047474 47 KPQPI--CYDGF-EPSGRMHIAQGVMKAIS--VNKLTS-AGCKVKIW 87 (326)
Q Consensus 47 ~~~~~--iy~G~-~PTG~lHLG~~~~~~~~--~~~lq~-aG~~v~il 87 (326)
+++|. ++-|= -.+|.+|+||.+-+++| +.+++. .|+++...
T Consensus 46 ~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~ 92 (933)
T COG0060 46 KGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYV 92 (933)
T ss_pred CCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCC
Confidence 44454 55553 23679999997766543 444544 58776443
No 192
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=23.22 E-value=89 Score=26.59 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHC-CCeEEEEEecc---eeeecCCCCCCHHHHHHHHHH
Q 047474 38 DELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSA-GCKVKIWVADW---FAQLNNKMGGDLKKIQTVGRY 112 (326)
Q Consensus 38 ~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~a-G~~v~ilIaD~---~a~~~~~~~~~~~~i~~~~~~ 112 (326)
+.|.++|++ .+|-+...+-|.. .+.++. +++-... ...++.++.|+ |.+--++ +.+. -=-.+++
T Consensus 79 ~~l~~~l~~-~~PD~IIsThp~~~~~~l~~-------lk~~~~~~~~p~~tvvTD~~~~H~~W~~~-~~D~--y~Vase~ 147 (169)
T PF06925_consen 79 RRLIRLLRE-FQPDLIISTHPFPAQVPLSR-------LKRRGRLPNIPVVTVVTDFDTVHPFWIHP-GVDR--YFVASEE 147 (169)
T ss_pred HHHHHHHhh-cCCCEEEECCcchhhhHHHH-------HHHhhcccCCcEEEEEcCCCCCCcCeecC-CCCE--EEECCHH
Confidence 467777775 3787777777765 333333 1222222 35677889998 4544333 1110 0001245
Q ss_pred HHHHHHHcCCCCCceEE
Q 047474 113 LIEIWIAVGMRTERVEF 129 (326)
Q Consensus 113 ~~~~~~A~G~d~~k~~~ 129 (326)
.++.+++.|++++|+.+
T Consensus 148 ~~~~l~~~Gi~~~~I~v 164 (169)
T PF06925_consen 148 VKEELIERGIPPERIHV 164 (169)
T ss_pred HHHHHHHcCCChhHEEE
Confidence 55677889999998754
No 193
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=23.02 E-value=4.6e+02 Score=24.71 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEe
Q 047474 10 GSSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVA 89 (326)
Q Consensus 10 ~~~~~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIa 89 (326)
||..+-..||.|||.+++..-.+++ .++..++.|+.. +. .. ... ..++.+++|++.++++.
T Consensus 49 GstGE~~~Lt~eEr~~~~~~~~~~~------------~~~~pvi~gv~~--~t--~~-~i~--~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 49 GGTGEFFSLTPDEYSQVVRAAVETT------------AGRVPVIAGAGG--GT--AQ-AIE--YAQAAERAGADGILLLP 109 (303)
T ss_pred cCCcCcccCCHHHHHHHHHHHHHHh------------CCCCcEEEecCC--CH--HH-HHH--HHHHHHHhCCCEEEECC
Confidence 4555556667777766655332111 223347778742 22 22 122 25567789999988877
Q ss_pred cceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 047474 90 DWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLW 131 (326)
Q Consensus 90 D~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~ 131 (326)
-++.. .+.+.+. .|+.+...+.+++ +.+++
T Consensus 110 P~y~~------~~~~~i~---~~f~~va~~~~lp---i~lYn 139 (303)
T PRK03620 110 PYLTE------APQEGLA---AHVEAVCKSTDLG---VIVYN 139 (303)
T ss_pred CCCCC------CCHHHHH---HHHHHHHHhCCCC---EEEEc
Confidence 75432 1334433 4555555566554 44444
No 194
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=22.97 E-value=98 Score=26.38 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=34.9
Q ss_pred cCcEEEeccchhHHHHHHHHHHHHhcCcCCcce-eecCcccCCCCCCccccCCC
Q 047474 193 KADICQLGMDQRKVNVLAREYCDDIKRKNKPII-LSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~-l~~~~lp~L~~g~~KMSKS~ 245 (326)
+.|..++|.||+.......+.-++.|.. |.- ...|++-.- +| +|.|+|.
T Consensus 88 ~~d~ivvs~et~~~~~~in~~r~~~gl~--~l~i~~v~~~~~~-~~-~~~SSt~ 137 (153)
T PRK00777 88 DFDAIVVSPETYPGALKINEIRRERGLK--PLEIVVIDFVLAE-DG-KPISSTR 137 (153)
T ss_pred CCCEEEEChhhhhhHHHHHHHHHHCCCC--ceEEEEEeeeecC-CC-CeeeHHH
Confidence 4688999999999999998888888753 432 334555443 45 5888763
No 195
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=22.77 E-value=2.5e+02 Score=23.86 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=31.2
Q ss_pred cCHHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEE
Q 047474 35 IQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIW 87 (326)
Q Consensus 35 ~~~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~il 87 (326)
-..+++..+|.+. +..+..|+-|.- +. +|.+ ...||++|++++=.
T Consensus 4 ~~~~~i~~iL~~~-K~IAvVG~S~~P~r~--sy~V-----~kyL~~~GY~ViPV 49 (140)
T COG1832 4 PEEEDIAEILKSA-KTIAVVGASDKPDRP--SYRV-----AKYLQQKGYRVIPV 49 (140)
T ss_pred ccHHHHHHHHHhC-ceEEEEecCCCCCcc--HHHH-----HHHHHHCCCEEEee
Confidence 3567888999753 567889997765 33 2433 34589999988765
No 196
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.46 E-value=4.8e+02 Score=24.44 Aligned_cols=86 Identities=10% Similarity=0.142 Sum_probs=46.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEe
Q 047474 10 GSSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVA 89 (326)
Q Consensus 10 ~~~~~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIa 89 (326)
||..+-..||.|||.+++..-.+++ +++..++.|+. + . +... .. ..++.+++|++.+.++.
T Consensus 47 GstGE~~~Lt~eEr~~v~~~~~~~~------------~g~~pvi~gv~-~-~--t~~a-i~--~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 47 GGTGEFFSLTPAEYEQVVEIAVSTA------------KGKVPVYTGVG-G-N--TSDA-IE--IARLAEKAGADGYLLLP 107 (296)
T ss_pred CCCcCcccCCHHHHHHHHHHHHHHh------------CCCCcEEEecC-c-c--HHHH-HH--HHHHHHHhCCCEEEECC
Confidence 4444555666666666655332111 23444788874 1 2 2222 22 25567789999888877
Q ss_pred cceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCC
Q 047474 90 DWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMR 123 (326)
Q Consensus 90 D~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d 123 (326)
-+.-. .+.+. ..+|+.+...+++++
T Consensus 108 P~y~~------~s~~~---i~~~f~~v~~a~~~p 132 (296)
T TIGR03249 108 PYLIN------GEQEG---LYAHVEAVCESTDLG 132 (296)
T ss_pred CCCCC------CCHHH---HHHHHHHHHhccCCC
Confidence 65422 23333 344555555565554
No 197
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.09 E-value=4.7e+02 Score=23.93 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHhc---CCCCeEEEcc-cCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHH
Q 047474 34 CIQEDELLNLLTK---KPQPICYDGF-EPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQT 108 (326)
Q Consensus 34 ~~~~~eL~~lL~~---~~~~~iy~G~-~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~ 108 (326)
+...+.|.++++. ++....+.|. -+-| .-|+-|+.-. +....+.|.+-+++ |++++-. .-++.....
T Consensus 10 ~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al---~~~a~~~gv~~V~v----H~f~DGR-Dt~P~S~~~ 81 (223)
T PF06415_consen 10 FFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFAL---IKLAKKQGVKKVYV----HAFTDGR-DTPPKSALK 81 (223)
T ss_dssp GGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHH---HHHHHHTT-SEEEE----EEEE-SS-SS-TTTHHH
T ss_pred cccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHH---HHHHHHcCCCEEEE----EEecCCC-CCCcchHHH
Confidence 5556667777764 2234578887 5556 8899994321 34456789886666 9999631 112333444
Q ss_pred HHHHHHHHHHHcCC
Q 047474 109 VGRYLIEIWIAVGM 122 (326)
Q Consensus 109 ~~~~~~~~~~A~G~ 122 (326)
..+.+.+.+...|.
T Consensus 82 yl~~l~~~l~~~~~ 95 (223)
T PF06415_consen 82 YLEELEEKLAEIGI 95 (223)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCC
Confidence 44445455555443
No 198
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.01 E-value=1.6e+02 Score=27.35 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=30.8
Q ss_pred CcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCC
Q 047474 222 KPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP 269 (326)
Q Consensus 222 ~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~ 269 (326)
..++++.||=|-- + -+.++ ++|-..++++++.+||++|+..
T Consensus 78 ~evlih~PmeP~~--~----~~~e~-gtL~~~~s~~e~~~rl~~a~~~ 118 (250)
T COG2861 78 HEVLIHMPMEPFS--Y----PKIEP-GTLRPGMSAEEILRRLRKAMNK 118 (250)
T ss_pred CEEEEeccCCccc--C----CCCCC-CCcccCCCHHHHHHHHHHHHhh
Confidence 3578888887754 2 12444 4899999999999999998665
No 199
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.86 E-value=2.4e+02 Score=21.91 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=34.6
Q ss_pred ccCCCCccchh----hhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 047474 56 FEPSGRMHIAQ----GVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLW 131 (326)
Q Consensus 56 ~~PTG~lHLG~----~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~ 131 (326)
+|--|-+|.|+ ++.. -+.++++.|.+++++ +|+ +.++.+. +.+.+.++|++.+.-.++.
T Consensus 3 ~D~dGvl~~g~~~ipga~e--~l~~L~~~g~~~~~l-------TNn-s~~s~~~-------~~~~L~~~Gi~~~~~~i~t 65 (101)
T PF13344_consen 3 FDLDGVLYNGNEPIPGAVE--ALDALRERGKPVVFL-------TNN-SSRSREE-------YAKKLKKLGIPVDEDEIIT 65 (101)
T ss_dssp EESTTTSEETTEE-TTHHH--HHHHHHHTTSEEEEE-------ES--SSS-HHH-------HHHHHHHTTTT--GGGEEE
T ss_pred EeCccEeEeCCCcCcCHHH--HHHHHHHcCCCEEEE-------eCC-CCCCHHH-------HHHHHHhcCcCCCcCEEEC
Confidence 34557788887 3333 367788899887776 444 3344333 3344578898866544554
Q ss_pred CC
Q 047474 132 SS 133 (326)
Q Consensus 132 ~S 133 (326)
..
T Consensus 66 s~ 67 (101)
T PF13344_consen 66 SG 67 (101)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 200
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.62 E-value=4.1e+02 Score=21.02 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHH
Q 047474 38 DELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIW 117 (326)
Q Consensus 38 ~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~ 117 (326)
+-+.+.|.+. ...+.....|...+..| + + .-+ +.+..++++ + +++.+.-++.+..+.+.+
T Consensus 26 ~~l~~~lgkP-e~~~~v~~~~~~~m~f~-g-----------~-~~p--~a~v~i~~~-g---~~~~e~k~~l~~~i~~~l 85 (116)
T PTZ00397 26 NAIADVLGKP-LSYIMSGYDYQKHMRFG-G-----------S-HDG--CCFVRVTSI-G---GISRSNNSSIAAAITKIL 85 (116)
T ss_pred HHHHHHhCCC-hHHEEEEEeCCceEEEC-C-----------C-CCc--eEEEEEEEe-c---CCCHHHHHHHHHHHHHHH
Confidence 4455555432 22588888888776666 1 0 011 122223333 2 356677677777666555
Q ss_pred -HHcCCCCCceEEEeC
Q 047474 118 -IAVGMRTERVEFLWS 132 (326)
Q Consensus 118 -~A~G~d~~k~~~~~~ 132 (326)
..+|++|+++.|...
T Consensus 86 ~~~lgi~~~rv~I~f~ 101 (116)
T PTZ00397 86 ASHLKVKSERVYIEFK 101 (116)
T ss_pred HHHhCcCcccEEEEEE
Confidence 468999999876653
No 201
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=21.00 E-value=3e+02 Score=25.96 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=41.9
Q ss_pred EEEcccCCCCccchhhhh---HHHHHHHHHHC--CCeEEEEEecceee-ecCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 047474 52 CYDGFEPSGRMHIAQGVM---KAISVNKLTSA--GCKVKIWVADWFAQ-LNNKMGGDLKKIQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~---~~~~~~~lq~a--G~~v~ilIaD~~a~-~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~ 124 (326)
.+.+++|+|.+++...-. ....+..+.+. |.++.+.|+++..- .-...-.+.+..++.+..+++.++..|+|-
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DG 110 (334)
T smart00636 32 AFANIDPDGTVTIGDEWADIGNFGQLKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDSIVSFLKKYGFDG 110 (334)
T ss_pred eeeeeCCCCCEeeCCcchhhhhHHHHHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHHHHHHHHHcCCCe
Confidence 566888888888753110 11134556553 88999999987640 000011233444555666777777877653
No 202
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=20.50 E-value=7.2e+02 Score=23.45 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecce------eeecCCC-------------
Q 047474 39 ELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWF------AQLNNKM------------- 99 (326)
Q Consensus 39 eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~------a~~~~~~------------- 99 (326)
-|+.+....++ ....|+ ||.+=.|--.+..--...+.+.|++|=++-.|=. |+++|..
T Consensus 18 ll~~l~~~~g~-a~~iGi--TG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 18 LLKRLYPHTGR-AHVIGI--TGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp HHHHHGGGTT--SEEEEE--EE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred HHHHHHhhcCC-ceEEEe--eCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 34555443322 345565 7777666521111124456667999988888876 4444421
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHcCCCC
Q 047474 100 -----GGDLKKIQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 100 -----~~~~~~i~~~~~~~~~~~~A~G~d~ 124 (326)
.+..--+...+...+..+.|+|+|.
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~ 124 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDV 124 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SE
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCE
Confidence 1112345566777788899999983
No 203
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.30 E-value=5.4e+02 Score=24.03 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEe
Q 047474 10 GSSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVA 89 (326)
Q Consensus 10 ~~~~~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIa 89 (326)
||...-..||.|||.+++..-.+. . +++..++.|+.. .. .. .+. ..++.+++|++.+.++.
T Consensus 42 GstGE~~~Ls~eEr~~l~~~~~~~----------~--~~~~pvi~gv~~--~t--~~-~i~--~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 42 GGTGEFFSLTPDEYAQVVRAAVEE----------T--AGRVPVLAGAGY--GT--AT-AIA--YAQAAEKAGADGILLLP 102 (289)
T ss_pred cCCcCcccCCHHHHHHHHHHHHHH----------h--CCCCCEEEecCC--CH--HH-HHH--HHHHHHHhCCCEEEECC
Confidence 455555667777777665533321 1 234447777742 22 22 122 25667889999888876
Q ss_pred cceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeC
Q 047474 90 DWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWS 132 (326)
Q Consensus 90 D~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~ 132 (326)
-.+.. .+.+.+. .|+.+...+.+++ +.+++.
T Consensus 103 P~y~~------~~~~~i~---~~f~~v~~~~~~p---i~lYn~ 133 (289)
T cd00951 103 PYLTE------APQEGLY---AHVEAVCKSTDLG---VIVYNR 133 (289)
T ss_pred CCCCC------CCHHHHH---HHHHHHHhcCCCC---EEEEeC
Confidence 65421 2344443 3454555565554 445543
No 204
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=20.07 E-value=66 Score=25.09 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=21.5
Q ss_pred ceeeecCCCCCCHHHHHHHH----HHHHHHHHHcCCCCC
Q 047474 91 WFAQLNNKMGGDLKKIQTVG----RYLIEIWIAVGMRTE 125 (326)
Q Consensus 91 ~~a~~~~~~~~~~~~i~~~~----~~~~~~~~A~G~d~~ 125 (326)
+|||++.|...+.+-.+.+. ....+.+.+.|++++
T Consensus 62 LHAfTGQPLP~D~Dl~K~~~d~iP~~ak~~m~~~Gi~~~ 100 (103)
T cd00490 62 LHAFTGQPLPDDADLRKERSDEIPEAAKELMREMGIEPE 100 (103)
T ss_pred HHHhcCCCCCChhhhhhcCcccccHHHHHHHHHhCCCcc
Confidence 49999988654433222222 334566788899876
No 205
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=20.04 E-value=1.2e+02 Score=25.41 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=33.0
Q ss_pred HHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 047474 74 VNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGM 122 (326)
Q Consensus 74 ~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~ 122 (326)
+.-+++.|.+|.++|--.++..-|-.|.+.+..+.....+...+.+.|+
T Consensus 42 L~~~k~~g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 42 LDVCKELGIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHTT-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHcCCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 5668889999999999988866665677888877777778888888887
Done!