Query 047474
Match_columns 326
No_of_seqs 175 out of 1563
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:06:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vgj_A Tyrosyl-tRNA synthetase 100.0 1.7E-83 5.9E-88 622.3 25.3 311 11-321 18-328 (373)
2 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.3E-78 4.4E-83 589.1 25.9 301 18-320 1-332 (375)
3 2cya_A Tyrosyl-tRNA synthetase 100.0 4.6E-78 1.6E-82 583.4 25.3 301 16-320 2-319 (364)
4 2j5b_A Tyrosyl-tRNA synthetase 100.0 1E-76 3.5E-81 570.9 20.1 294 15-318 6-302 (348)
5 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.8E-74 2E-78 591.8 27.4 299 16-321 7-320 (690)
6 2cyb_A Tyrosyl-tRNA synthetase 100.0 7.4E-71 2.5E-75 526.0 27.8 293 18-320 1-293 (323)
7 2zp1_A Tyrosyl-tRNA synthetase 100.0 7.3E-70 2.5E-74 516.9 27.8 278 23-320 3-280 (314)
8 1n3l_A Tyrosyl-tRNA synthetase 100.0 3.5E-68 1.2E-72 515.9 29.8 294 16-320 3-302 (372)
9 2dlc_X Tyrosyl-tRNA synthetase 100.0 8E-68 2.7E-72 516.9 26.6 300 14-320 3-315 (394)
10 1h3f_A Tyrosyl-tRNA synthetase 100.0 9.2E-62 3.2E-66 477.7 26.8 257 15-286 3-270 (432)
11 3jxe_A Tryptophanyl-tRNA synth 100.0 2.6E-60 8.7E-65 461.7 23.3 247 25-286 48-311 (392)
12 3tzl_A Tryptophanyl-tRNA synth 100.0 9.3E-61 3.2E-65 455.4 18.0 226 49-286 3-243 (322)
13 2el7_A Tryptophanyl-tRNA synth 100.0 5.2E-60 1.8E-64 452.9 22.5 228 50-285 2-247 (337)
14 3prh_A Tryptophanyl-tRNA synth 100.0 9.6E-61 3.3E-65 463.4 17.4 240 37-285 15-282 (388)
15 2g36_A Tryptophanyl-tRNA synth 100.0 2.5E-60 8.6E-65 455.5 18.8 229 48-286 11-258 (340)
16 1yi8_B Tryptophanyl-tRNA synth 100.0 1.1E-59 3.8E-64 452.8 20.3 230 48-287 21-269 (351)
17 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.8E-59 6.1E-64 446.8 19.0 249 24-287 8-277 (322)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.3E-59 1.5E-63 481.0 22.0 259 49-321 381-643 (690)
19 3sz3_A Tryptophanyl-tRNA synth 100.0 3.8E-60 1.3E-64 453.5 12.6 227 49-285 6-259 (341)
20 2jan_A Tyrosyl-tRNA synthetase 100.0 1.1E-58 3.6E-63 455.0 22.2 251 24-288 7-275 (432)
21 3n9i_A Tryptophanyl-tRNA synth 100.0 4.6E-59 1.6E-63 446.3 17.6 216 48-272 14-241 (346)
22 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2.3E-58 7.8E-63 440.1 20.8 228 49-285 1-248 (328)
23 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 7.1E-58 2.4E-62 449.2 24.6 248 24-288 7-274 (420)
24 2ts1_A Tyrosyl-tRNA synthetase 100.0 5.6E-58 1.9E-62 449.0 22.3 248 25-288 6-273 (419)
25 2yy5_A Tryptophanyl-tRNA synth 100.0 1.4E-58 4.6E-63 444.8 17.5 228 49-285 4-258 (348)
26 3tze_A Tryptophanyl-tRNA synth 100.0 4.4E-58 1.5E-62 447.5 21.2 246 25-286 76-347 (406)
27 3hv0_A Tryptophanyl-tRNA synth 100.0 1.9E-57 6.5E-62 442.0 23.4 247 25-286 49-324 (393)
28 2pid_A Tyrosyl-tRNA synthetase 100.0 2.5E-58 8.5E-63 443.9 17.0 249 24-287 13-296 (356)
29 2ip1_A Tryptophanyl-tRNA synth 100.0 3E-57 1E-61 445.6 23.0 252 24-286 76-353 (432)
30 3hzr_A Tryptophanyl-tRNA synth 100.0 3.1E-57 1.1E-61 439.2 22.3 246 25-286 57-327 (386)
31 3a04_A Tryptophanyl-tRNA synth 100.0 3.2E-57 1.1E-61 438.5 21.4 247 26-290 46-317 (372)
32 3foc_A Tryptophanyl-tRNA synth 100.0 7.9E-57 2.7E-61 442.3 22.0 250 25-286 66-391 (451)
33 3i05_A Tryptophanyl-tRNA synth 100.0 3.3E-57 1.1E-61 440.6 16.4 245 25-286 53-327 (395)
34 1r6u_A Tryptophanyl-tRNA synth 100.0 9E-57 3.1E-61 441.9 18.8 250 24-286 82-360 (437)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 5.9E-56 2E-60 431.9 24.0 250 24-287 38-335 (392)
36 1r6t_A Tryptophanyl-tRNA synth 100.0 1.6E-55 5.4E-60 438.2 22.4 249 25-286 130-407 (477)
37 1nzj_A Hypothetical protein YA 99.0 2.4E-09 8.1E-14 100.4 14.2 209 57-279 13-268 (298)
38 2cfo_A Glutamyl-tRNA synthetas 98.7 7.3E-07 2.5E-11 88.9 18.8 214 56-285 8-298 (492)
39 1j09_A Glutamyl-tRNA synthetas 98.7 1.4E-07 4.8E-12 93.5 13.2 214 57-285 9-293 (468)
40 2ja2_A Glutamyl-tRNA synthetas 98.6 1.4E-07 4.8E-12 94.1 11.8 214 57-285 14-307 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.6 3.8E-07 1.3E-11 90.8 13.3 214 55-284 31-303 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.5 3.2E-07 1.1E-11 93.4 9.4 195 56-265 136-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 98.1 5.3E-05 1.8E-09 75.3 16.0 91 191-286 216-313 (481)
44 3aii_A Glutamyl-tRNA synthetas 98.0 3.6E-05 1.2E-09 77.3 12.5 214 17-246 59-335 (553)
45 1irx_A Lysyl-tRNA synthetase; 98.0 3.3E-05 1.1E-09 77.5 10.9 72 191-265 228-308 (523)
46 2d5b_A Methionyl-tRNA syntheta 97.9 0.0002 6.9E-09 71.0 16.1 71 192-265 250-326 (500)
47 4g6z_A Glutamate-tRNA ligase; 97.9 0.00048 1.6E-08 68.4 17.2 215 56-285 32-313 (490)
48 2csx_A Methionyl-tRNA syntheta 97.7 0.00055 1.9E-08 67.9 14.6 69 193-265 250-324 (497)
49 4dlp_A Aminoacyl-tRNA syntheta 97.6 0.0016 5.6E-08 65.2 17.1 67 193-265 276-350 (536)
50 3c8z_A Cysteinyl-tRNA syntheta 97.6 0.0017 5.7E-08 63.2 15.6 69 193-265 244-321 (414)
51 1li5_A Cysrs, cysteinyl-tRNA s 97.5 0.00036 1.2E-08 68.9 10.1 68 193-265 220-295 (461)
52 3kfl_A Methionyl-tRNA syntheta 97.5 0.0037 1.2E-07 63.2 17.6 67 193-265 294-368 (564)
53 3tqo_A Cysteinyl-tRNA syntheta 97.5 0.00064 2.2E-08 67.1 11.7 80 52-134 29-119 (462)
54 4gri_A Glutamate--tRNA ligase; 97.3 0.0048 1.6E-07 61.7 16.0 88 192-284 228-322 (512)
55 3sp1_A Cysteinyl-tRNA syntheta 97.2 0.0024 8.1E-08 63.6 12.2 69 193-265 253-329 (501)
56 2hz7_A Glutaminyl-tRNA synthet 97.2 0.01 3.6E-07 62.3 17.1 75 52-136 67-143 (851)
57 1qtq_A GLNRS, protein (glutami 97.2 0.0073 2.5E-07 60.7 15.0 74 53-136 30-103 (553)
58 1iq0_A Arginyl-tRNA synthetase 97.0 0.0018 6.2E-08 65.8 9.2 54 197-254 351-407 (592)
59 2zue_A Arginyl-tRNA synthetase 96.4 0.016 5.3E-07 59.4 10.9 55 196-254 380-439 (629)
60 1f7u_A Arginyl-tRNA synthetase 96.3 0.023 7.7E-07 57.9 11.6 56 193-254 363-420 (607)
61 1ffy_A Isoleucyl-tRNA syntheta 93.5 0.051 1.7E-06 58.0 4.5 69 193-265 548-624 (917)
62 3u1f_A Methionyl-tRNA syntheta 93.4 0.092 3.1E-06 52.3 6.0 78 49-126 9-97 (542)
63 3fnr_A Arginyl-tRNA synthetase 93.1 0.029 9.8E-07 55.4 1.7 61 193-254 234-298 (464)
64 2x1l_A Methionyl-tRNA syntheta 93.1 0.036 1.2E-06 55.1 2.4 69 193-265 265-339 (524)
65 3u1f_A Methionyl-tRNA syntheta 92.8 0.088 3E-06 52.4 4.8 67 193-265 278-352 (542)
66 1ile_A Ilers, isoleucyl-tRNA s 91.9 0.1 3.5E-06 54.9 4.0 70 193-265 544-620 (821)
67 2x1l_A Methionyl-tRNA syntheta 90.6 1.2 4.2E-05 43.9 10.3 84 47-134 9-106 (524)
68 1gax_A Valrs, valyl-tRNA synth 90.1 0.17 5.9E-06 53.5 3.8 68 192-265 480-557 (862)
69 1rqg_A Methionyl-tRNA syntheta 90.0 0.63 2.2E-05 48.2 7.8 82 51-134 5-97 (722)
70 1wz2_A Leucyl-tRNA synthetase; 89.6 0.18 6.3E-06 54.0 3.5 69 192-264 602-678 (967)
71 1wkb_A Leucyl-tRNA synthetase; 89.4 0.17 5.8E-06 53.1 3.0 69 192-264 602-678 (810)
72 3h99_A Methionyl-tRNA syntheta 88.7 3.6 0.00012 41.0 12.1 66 196-266 303-375 (560)
73 3h99_A Methionyl-tRNA syntheta 87.8 0.3 1E-05 48.9 3.5 75 57-133 28-111 (560)
74 1gax_A Valrs, valyl-tRNA synth 86.6 1.3 4.3E-05 46.9 7.5 42 51-92 37-82 (862)
75 2v0c_A Aminoacyl-tRNA syntheta 85.4 0.43 1.5E-05 50.6 3.2 42 192-233 530-579 (878)
76 4arc_A Leucine--tRNA ligase; l 84.7 0.81 2.8E-05 48.5 4.9 74 191-266 541-669 (880)
77 4arc_A Leucine--tRNA ligase; l 82.4 2.5 8.7E-05 44.7 7.6 75 51-125 56-140 (880)
78 2v0c_A Aminoacyl-tRNA syntheta 77.2 2.9 9.9E-05 44.3 6.0 73 51-125 36-120 (878)
79 1rqg_A Methionyl-tRNA syntheta 72.8 1.4 4.7E-05 45.6 2.1 66 196-266 292-374 (722)
80 1wz2_A Leucyl-tRNA synthetase; 70.8 3.9 0.00013 43.7 5.1 43 49-92 35-81 (967)
81 1ile_A Ilers, isoleucyl-tRNA s 68.8 2.3 7.7E-05 44.6 2.7 41 50-90 40-84 (821)
82 1ffy_A Isoleucyl-tRNA syntheta 65.0 3 0.0001 44.4 2.7 39 51-89 51-93 (917)
83 1wkb_A Leucyl-tRNA synthetase; 58.6 4.3 0.00015 42.4 2.5 37 52-88 38-78 (810)
84 3fnr_A Arginyl-tRNA synthetase 58.6 9 0.00031 37.4 4.6 42 52-93 35-81 (464)
85 4ac1_X Endo-N-acetyl-beta-D-gl 30.0 2.1E+02 0.0071 25.5 8.7 77 52-131 39-126 (283)
86 3mlg_A Putative uncharacterize 26.4 16 0.00054 31.3 0.3 41 3-46 89-129 (189)
87 3m6y_A 4-hydroxy-2-oxoglutarat 23.4 78 0.0027 28.3 4.2 91 17-114 167-268 (275)
88 3flu_A DHDPS, dihydrodipicolin 21.1 3.7E+02 0.013 23.9 8.7 92 10-131 49-140 (297)
89 3m5v_A DHDPS, dihydrodipicolin 20.7 3.9E+02 0.013 23.8 8.7 92 10-131 49-141 (301)
90 3oqi_A YVMC, putative uncharac 20.5 4.5E+02 0.015 23.3 8.8 100 41-149 23-132 (257)
91 2y8v_A CHIC, class III chitina 20.5 2.4E+02 0.0083 25.0 7.2 78 52-132 48-134 (290)
92 2lug_A Myelin basic protein; i 20.4 64 0.0022 19.5 2.1 19 272-290 6-24 (36)
No 1
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=1.7e-83 Score=622.33 Aligned_cols=311 Identities=59% Similarity=1.003 Sum_probs=293.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEec
Q 047474 11 SSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVAD 90 (326)
Q Consensus 11 ~~~~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD 90 (326)
++.....|+++||+++|+||++||+++++|+++|++++.+++|+||+|||++||||+++..+++++||++||+++++|||
T Consensus 18 ~~~~~~~~~~~e~~~li~r~~~e~~~~~~L~~~L~~~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD 97 (373)
T 3vgj_A 18 AQEESKIEDVDKILNDILSISSECIQPDELRVKLLLKRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIAD 97 (373)
T ss_dssp --CHHHHHHHHHHHHHHHHHCSEEECHHHHHHHHHHCSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECH
T ss_pred cccCCCCCCHHHHHHHHHcCcceecCHHHHHHHHhcCCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEec
Confidence 34446678999999999999999999999999998766788999999999999999876666789999999999999999
Q ss_pred ceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc
Q 047474 91 WFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170 (326)
Q Consensus 91 ~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~ 170 (326)
|||+++||+++++++++++++|+++.|+|+|+||+|++||+||+|.++|+.+||.+++++++++++++|+++.++++|.+
T Consensus 98 ~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~ 177 (373)
T 3vgj_A 98 WFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSE 177 (373)
T ss_dssp HHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCT
T ss_pred ceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhc
Confidence 99999999889999999999999999999999999999999999877899999999999999999999999999999986
Q ss_pred cCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCce
Q 047474 171 QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI 250 (326)
Q Consensus 171 ~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I 250 (326)
.+++++|+|+||+|||||++++++|+||||.|||+|++++||+++|+|+.++|+++++|+||||++|++|||||.++|+|
T Consensus 178 ~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I 257 (373)
T 3vgj_A 178 GEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAI 257 (373)
T ss_dssp TSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCC
T ss_pred cCCCChHHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCee
Confidence 56789999999999999999999999999999999999999999999988789999999999998887899999988999
Q ss_pred ecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 251 YMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 251 ~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
||+|+|++|++||++|||||+++++||+++|+++++||+.+.|.++|++++||+++|.++++|+++|....
T Consensus 258 ~L~D~p~~i~~KI~kA~td~~~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~ 328 (373)
T 3vgj_A 258 FMDDSESDVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGF 328 (373)
T ss_dssp BTTCCHHHHHHHHHHSCCCTTCCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTS
T ss_pred ecCCCHHHHHHHHHhCcCCCCCCCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998653
No 2
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-78 Score=589.13 Aligned_cols=301 Identities=38% Similarity=0.674 Sum_probs=281.5
Q ss_pred CCHHHHHHHHHhh-cccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeec
Q 047474 18 MSVEEKFRLVRSI-GEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLN 96 (326)
Q Consensus 18 ~~~~~~~~li~r~-~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~ 96 (326)
|+++||++|++|+ ++||+++++|+++|++++++++|+||+|||++||||++..+.++++||++||+++++||||||+++
T Consensus 1 ~~~~~~~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~ 80 (375)
T 2cyc_A 1 MDIEERINLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIN 80 (375)
T ss_dssp CCHHHHHHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHT
T ss_pred CCHHHHHHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcC
Confidence 6899999999999 999999999999998766778999999999999999655656899999999999999999999999
Q ss_pred CCCCCCHHHHHHHH-HHHH----HHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccccc
Q 047474 97 NKMGGDLKKIQTVG-RYLI----EIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQ 171 (326)
Q Consensus 97 ~~~~~~~~~i~~~~-~~~~----~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~ 171 (326)
+|++++++++++++ ++++ ++|+|+|+||++++||+||+|. ++. +||.+++++++++++++|+++.++++|.++
T Consensus 81 ~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~-~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~ 158 (375)
T 2cyc_A 81 DKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEIL-EKG-DYWQTVIDISKNVTLSRVMRSITIMGRQMG 158 (375)
T ss_dssp TGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHH-TBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhh-hhh-HHHHHHHHHhceeEHHHHhccchhhhhccC
Confidence 98889999999999 8998 9999999999999999999965 665 899999999999999999999999999866
Q ss_pred CccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcC--------cCCcceeecCcccCCCCC------
Q 047474 172 DELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKR--------KNKPIILSHHMLPGLQQG------ 237 (326)
Q Consensus 172 ~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~--------~~~p~~l~~~~lp~L~~g------ 237 (326)
+++++|+|+||+||||||+++++|+||||.|||+|++++||+++|+|+ ..+|+++++|+||||++|
T Consensus 159 ~~i~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~ 238 (375)
T 2cyc_A 159 EAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIE 238 (375)
T ss_dssp TTCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCC
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCccccccc
Confidence 678999999999999999999999999999999999999999999997 226888999999999443
Q ss_pred ----------CccccCCCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCc-eeEeecccCCCCce
Q 047474 238 ----------QEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK-FVVERSEANGGNKT 306 (326)
Q Consensus 238 ----------~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~-~~i~r~~~~gg~~~ 306 (326)
++|||||.|+|+|||+|+|++|++||++|||+|+++++||+++|+++|+|+..+. ++|++++++||+++
T Consensus 239 ~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~A~t~~~~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~ 318 (375)
T 2cyc_A 239 SEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVT 318 (375)
T ss_dssp SHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEE
T ss_pred chhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHhcCCCCcceeeecchhccCcCC
Confidence 3799999988999999999999999999999999999999999999999998776 99999999999999
Q ss_pred ecCHHHHHHHHHhh
Q 047474 307 FETMKNLLLIMKKE 320 (326)
Q Consensus 307 y~~~eel~~~~~~~ 320 (326)
+.++++|+++|...
T Consensus 319 ~~~~~el~~~~~~g 332 (375)
T 2cyc_A 319 YTTFEELKRDFAEG 332 (375)
T ss_dssp ESSHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHcC
Confidence 99999999999874
No 3
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=4.6e-78 Score=583.42 Aligned_cols=301 Identities=36% Similarity=0.639 Sum_probs=266.5
Q ss_pred CCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeee
Q 047474 16 PQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95 (326)
Q Consensus 16 ~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~ 95 (326)
..|++++|++|++|+++||+++++|+++|++++++++|+||+|||++|||| +..+.++++||++||+++++||||||++
T Consensus 2 ~~~~~~~~~~l~~r~~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~ 80 (364)
T 2cya_A 2 VRVDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYI 80 (364)
T ss_dssp --CHHHHHHHHHHTTCSEEETHHHHHHHHHHCSCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHcCchhcCCHHHHHHHHhcCCCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhh
Confidence 358899999999999999999999999998766778999999999999999 4455589999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccccc-Ccc
Q 047474 96 NNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQ-DEL 174 (326)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~-~~~ 174 (326)
++|++++++++++++++++++|+|+|+||++++||+||+|. .+ .+||.+++++++++++++|+++.++++|.+. .++
T Consensus 81 ~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~-~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i 158 (364)
T 2cya_A 81 NDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELA-SD-KDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEV 158 (364)
T ss_dssp TTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHH-TC-HHHHHHHHHHHHTSCHHHHHTTC------CCGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhh-cc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCc
Confidence 99988999999999999999999999999999999999976 56 6899999999999999999999999999854 358
Q ss_pred chhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCC---------------CCc
Q 047474 175 TAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQ---------------GQE 239 (326)
Q Consensus 175 ~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~---------------g~~ 239 (326)
++|+|+||+|||||++++++|+||||.|||+|++++||+++|+|+. +|+++++|+||||++ |++
T Consensus 159 ~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~-~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~ 237 (364)
T 2cya_A 159 DASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRK-KPVAIHTPIISSLQGPGRMEASQGEIDDVLAEV 237 (364)
T ss_dssp CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCC-CCEEEEECCCBCSSCC----------------C
T ss_pred cchhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCCC-CceeeccceeeCCCccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999965 799999999999954 258
Q ss_pred cccCCCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCc-eeEeecccCCCCceecCHHHHHHHHH
Q 047474 240 KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK-FVVERSEANGGNKTFETMKNLLLIMK 318 (326)
Q Consensus 240 KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~-~~i~r~~~~gg~~~y~~~eel~~~~~ 318 (326)
|||||+++|+|||+|+|++|++||++|||||+++++|||++|+++|+||+.+. ++|+|+++|||++++.++++|+++|.
T Consensus 238 KMSKS~~~~~I~L~d~p~~i~~Ki~~a~td~~~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~ 317 (364)
T 2cya_A 238 KMSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYT 317 (364)
T ss_dssp BCCSSSGGGSCBTTCCHHHHHHHHHTSCCCTTCCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHH
T ss_pred ccCCCCCCCEeeccCCHHHHHHHHHhCcCCCCCCCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHh
Confidence 99999888999999999999999999999999999999999999999998876 99999999999999999999999998
Q ss_pred hh
Q 047474 319 KE 320 (326)
Q Consensus 319 ~~ 320 (326)
..
T Consensus 318 ~g 319 (364)
T 2cya_A 318 DG 319 (364)
T ss_dssp TT
T ss_pred cC
Confidence 74
No 4
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1e-76 Score=570.92 Aligned_cols=294 Identities=45% Similarity=0.796 Sum_probs=259.1
Q ss_pred CCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceee
Q 047474 15 TPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQ 94 (326)
Q Consensus 15 ~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~ 94 (326)
++.|++++|+++++||++|++++++|+++|++++++++|+||+|||++||||+++...++++||++||+++++||||||+
T Consensus 6 ~~~~~~~~~~~l~~r~~~e~~~~~~L~~~L~~~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~ 85 (348)
T 2j5b_A 6 TDHTNNEHRLTQLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAK 85 (348)
T ss_dssp -CHHHHHHHHHHHHTTCSEESCHHHHHHHHHHTCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHH
T ss_pred cCCCCHHHHHHHHHcCcccccCHHHHHHHHhcCCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhh
Confidence 34678999999999999999999999999987556789999999999999996555568999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCcc
Q 047474 95 LNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDEL 174 (326)
Q Consensus 95 ~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~ 174 (326)
++||++.+++++++++++++++|+|+|+||+|+.||+||+|++++. +||.+++++++++++++|+++.++++|.+++++
T Consensus 86 ~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i 164 (348)
T 2j5b_A 86 MNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRNESDCL 164 (348)
T ss_dssp HTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC-------------
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhhccCCc
Confidence 9998777999999999999999999999999999999999887776 899999999999999999999999998766678
Q ss_pred chhhhhhhhhhhhhhccc---cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCcee
Q 047474 175 TAAQILYPCMQCADIFFL---KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIY 251 (326)
Q Consensus 175 ~~~~~~YP~lQaaD~~~l---~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~ 251 (326)
++|+|+||+|||||++++ ++|+||||.|||+|++++||+++++|+. .|+++++|+||||++|++|||||.++|+||
T Consensus 165 ~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~~~-~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~ 243 (348)
T 2j5b_A 165 KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGLK-IPISLSHHMLMSLSGPKKKMSKSDPQGAIF 243 (348)
T ss_dssp ----CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTTCC-CCEEEEBCCCCCTTCSSCCCSTTCGGGSCB
T ss_pred ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhCCC-CceeecCccccCCCCcccccccCCCCCeEe
Confidence 999999999999999999 9999999999999999999999999976 488899999999987878999999879999
Q ss_pred cCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHH
Q 047474 252 MEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMK 318 (326)
Q Consensus 252 L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~ 318 (326)
|+|+|++|++||++|+|+|++++ ||+++|+++++||+...|+|+ +.+|.++++|+++|.
T Consensus 244 L~d~p~~i~kKI~ka~td~~~~~-~~~~~~~~~~~~~~~~~~~i~-------~~~~~~~~el~~~~~ 302 (348)
T 2j5b_A 244 MDDTEQEVSEKISRAYCTDETFD-NPIFEYIKYLLLRWFGTLNLC-------GKIYTDIESIQEDFS 302 (348)
T ss_dssp TTCCHHHHHHHHHHSCCCSSSTT-CHHHHHHHHTHHHHHSCEEET-------TEEESSHHHHHHHHT
T ss_pred ecCCHHHHHHHHhcccCCCCCCC-CchHhHHHHhhhhhhcccccc-------cCCcchHHHHHHHHc
Confidence 99999999999999999999999 999999999999988878875 568999999999997
No 5
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.8e-74 Score=591.80 Aligned_cols=299 Identities=60% Similarity=1.065 Sum_probs=273.4
Q ss_pred CCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeee
Q 047474 16 PQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95 (326)
Q Consensus 16 ~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~ 95 (326)
-.|+.+||+++|+|+++||+++++|+++|++++++++|+||+|||++||||+++..+++++||++||+++++||||||++
T Consensus 7 ~~~~~~~~~~~~~~~~~e~~~~~eL~~~L~~~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~ 86 (690)
T 3p0j_A 7 HHMNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALM 86 (690)
T ss_dssp CCCCHHHHHHHHHHTCSEEECHHHHHHHHHHCTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGG
T ss_pred cccCHHHHHHHHhhCceeecCHHHHHHHHhcCCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEe
Confidence 35899999999999999999999999999876677899999999999999988765578899999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccc
Q 047474 96 NNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELT 175 (326)
Q Consensus 96 ~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~ 175 (326)
+||+++++++++++++|++++|+|+|+||+|++||+||+|+++++++||.+++++++++|+++|+++.++++|.+.+ ++
T Consensus 87 ~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~-i~ 165 (690)
T 3p0j_A 87 NDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGT-LT 165 (690)
T ss_dssp GCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CC-CC
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654 89
Q ss_pred hhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCC
Q 047474 176 AAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDE 255 (326)
Q Consensus 176 ~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~ 255 (326)
+|+|+||+|||||++++++|+||||.|||+|++++||+++|+|+.++|+++++|+||||++|++|||||.++|+|||+|+
T Consensus 166 ~g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~D~ 245 (690)
T 3p0j_A 166 AAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 245 (690)
T ss_dssp CSCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTTCC
T ss_pred hhhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeeccCC
Confidence 99999999999999999999999999999999999999999998878999999999999888789999998789999999
Q ss_pred HHHHHHHHHhccCCCCC---------------CCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 256 EAEVNVKIKKAYCPPKI---------------VEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 256 ~~~i~~KI~kA~c~~~~---------------~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
|++|++||++|||||++ +++||+++|+++++||+.+. ++++||. ++.++++|+++|...
T Consensus 246 p~~i~kKI~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~-----~~~~~~~-~~~~~eel~~~y~~G 319 (690)
T 3p0j_A 246 EEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGA-----AATIDGT-TYATYEDLEQAFVSD 319 (690)
T ss_dssp HHHHHHHHHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTC-----CEEETTE-EESSHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccc-----cccccCC-CcchHHHHHHHHHcC
Confidence 99999999999999765 68999999999999998876 3467787 899999999999875
Q ss_pred h
Q 047474 321 I 321 (326)
Q Consensus 321 ~ 321 (326)
.
T Consensus 320 ~ 320 (690)
T 3p0j_A 320 E 320 (690)
T ss_dssp S
T ss_pred C
Confidence 3
No 6
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=7.4e-71 Score=526.02 Aligned_cols=293 Identities=36% Similarity=0.572 Sum_probs=270.1
Q ss_pred CCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecC
Q 047474 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNN 97 (326)
Q Consensus 18 ~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~ 97 (326)
|+++||+++++||+.|++++++|+++|++++++++|+|++|||++||||++ ...+++++|++|++++++||||||+++|
T Consensus 1 ~~~~~~~~l~~rg~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg~lHlG~l~-~l~~~~~lq~~g~~~~~~i~D~~a~~~d 79 (323)
T 2cyb_A 1 MDITEKLRLITRNAEEVVTEEELRQLIETKEKPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNE 79 (323)
T ss_dssp -CHHHHHHHHHTTCSEEETHHHHHHHHHSCSCCEEEEEECCCSCCBHHHHH-HHHHHHHHHHTTCEEEEEECHHHHHHTT
T ss_pred CCHHHHHHHHHcCChhhcCHHHHHHHHhCCCCCEEEECcCCCCcchHHHHH-HHHHHHHHHHCCCcEEEEECCceeEcCC
Confidence 688999999999999999999999999876677899999999999999954 3457999999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchh
Q 047474 98 KMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177 (326)
Q Consensus 98 ~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~ 177 (326)
..+++++++++++++++|+|+|+||+++.|++||+|+. . ..||.++..+++++++++|+++.++++|..++ .++|
T Consensus 80 --~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~-~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~-~~~g 154 (323)
T 2cyb_A 80 --KGTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQL-S-RDYVLDVLKMARITTLNRARRSMDEVSRRKED-PMVS 154 (323)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTT-S-HHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSS-CBTH
T ss_pred --CCCHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhcc-c-hHHHHHHHHHhCccCHHHHhccchhhccccCC-CCch
Confidence 36999999999999999999999999999999999762 2 35788888899999999999988777775333 4999
Q ss_pred hhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHH
Q 047474 178 QILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEA 257 (326)
Q Consensus 178 ~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~ 257 (326)
+|+||+|||||++++++|+||+|.||++|++++|++++++|+. +|+.+++|+||+| +| +||||| ++|+|||+|+|+
T Consensus 155 ~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~-~p~~l~~pll~~l-~G-~KMSKS-~~n~I~l~d~p~ 230 (323)
T 2cyb_A 155 QMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYS-SPVCLHTPILVGL-DG-QKMSSS-KGNYISVRDPPE 230 (323)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCC-CCEEEEECCCBCT-TS-SBCCTT-TTCSCBTTCCHH
T ss_pred hhhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCC-CceEEecCcccCC-CC-CcccCC-cCceeCCCCCHH
Confidence 9999999999999999999999999999999999999999975 6899999999999 67 799999 589999999999
Q ss_pred HHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 258 EVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 258 ~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
+|++||++|+|+++++++||+++|++++++|+.+.++|+|++++||++++.++++|+++|..+
T Consensus 231 ~i~~Ki~~a~td~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g 293 (323)
T 2cyb_A 231 EVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSG 293 (323)
T ss_dssp HHHHHHHTSCCCTTCCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCCCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcC
Confidence 999999999999999999999999999999988889999999999999999999999999874
No 7
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=7.3e-70 Score=516.93 Aligned_cols=278 Identities=33% Similarity=0.593 Sum_probs=257.1
Q ss_pred HHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCC
Q 047474 23 KFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGD 102 (326)
Q Consensus 23 ~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~ 102 (326)
|++|++||++||+++++|+++|+ ++++++|+||+|||++|||| +....++++||++|++++++|||+||++++ .++
T Consensus 3 ~~~l~~r~~~e~~~~~~l~~~L~-~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~--~~~ 78 (314)
T 2zp1_A 3 EFEMIKRNTSEIISEEELREVLK-KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQ--KGE 78 (314)
T ss_dssp HHHHHHTTCSEEETHHHHHHHHT-SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTT--CCC
T ss_pred HHHHHHcCCeecCCHHHHHHHHc-CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCC--CCC
Confidence 89999999999999999999998 44667999999999999999 444458999999999999999999999998 369
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhh
Q 047474 103 LKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYP 182 (326)
Q Consensus 103 ~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP 182 (326)
++++++++++++++|+|+|+| +.|++||+|. .+ .+||.+++++++++++++|+++.++++|..++. ++|+|+||
T Consensus 79 ~e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~-~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~-~~g~~~YP 152 (314)
T 2zp1_A 79 LDEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQ-LD-KDYTLNVYRLALKTTLKRARRSMELIAREDENP-KVAEVIYP 152 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---CEEEEGGGTT-TS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSC-CTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC---eEEEECChhh-cc-hHHHHHHHHHHCcCcHHHHhccchhhhhccCCC-CchhhhhH
Confidence 999999999999999999998 7899999976 44 679999999999999999999999999875444 99999999
Q ss_pred hhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHH
Q 047474 183 CMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVK 262 (326)
Q Consensus 183 ~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~K 262 (326)
+|||||++++++|+||||.|||+|++++|++++ ++|+++++|+||+| +|.+||||| ++|+|||+|+|++|++|
T Consensus 153 ~LQaaDil~~~~~~v~~G~DQ~~~~~l~R~i~~-----~~~~~~~~~~l~~l-~G~~KMSKS-~~~~I~L~d~~~~i~~K 225 (314)
T 2zp1_A 153 IMQVNTSHYLGVDVAVGGMEQRKIHMLARELLP-----KKVVCIHNPVLTGL-DGEGKMSSS-KGNFIAVDDSPEEIRAK 225 (314)
T ss_dssp HHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHSS-----SCCEEEEECCCBCT-TSSSBCCTT-TTCSCBTTCCHHHHHHH
T ss_pred HHHHHhHHhhCCCEEEcChhHHHHHHHHHHhcC-----CCcEEeeccccccC-CcccccCCC-CcceecCCCCHHHHHHH
Confidence 999999999999999999999999999999986 36889999999999 576799999 68999999999999999
Q ss_pred HHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 263 IKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 263 I~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
|++|+|||+++++||+++|++|++ +.+ ++|+|++++||+.++.++||++++|...
T Consensus 226 I~~a~td~~~~~~~~~~~~~~~~~--~~~-~~i~r~~k~g~~~~~~~~eei~~~~~~g 280 (314)
T 2zp1_A 226 IKKAYCPAGVVEGNPIMEIAKYFL--EYP-LTIKRPEKFGGDLTVNSYEELESLFKNK 280 (314)
T ss_dssp HHHSCCCTTCCTTCHHHHHHHHHC--CSS-EEECCCGGGTCCEEESSHHHHHHHHHTT
T ss_pred HHhCCCCCCCCCCCcHHHHHHHHh--cCC-cceeehhhccCCCCcCCHHHHHHHHHcC
Confidence 999999999999999999999987 556 9999999999999999999999999864
No 8
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=3.5e-68 Score=515.90 Aligned_cols=294 Identities=30% Similarity=0.433 Sum_probs=251.2
Q ss_pred CCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeee
Q 047474 16 PQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95 (326)
Q Consensus 16 ~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~ 95 (326)
+.|++++|+++++||++||+++++|+++|++ +++++|+||+|||++||||++.. ++++++|++|++++++||||||++
T Consensus 3 ~~~~~~~~~~l~~Rg~~e~~~~~~L~~~L~~-~~~~vy~G~~PTG~lHlG~~~~~-l~~~~~~q~g~~~i~~I~D~ha~t 80 (372)
T 1n3l_A 3 DAPSPEEKLHLITRNLQEVLGEEKLKEILKE-RELKIYWGTATTGKPHVAYFVPM-SKIADFLKAGCEVTILFADLHAYL 80 (372)
T ss_dssp -CCCHHHHHHHHHTTCSEEECHHHHHHHHTT-SCCEEEEEECCSSCCBGGGHHHH-HHHHHHHHTTCEEEEEECHHHHHH
T ss_pred CcCCHHHHHHHHHcCCeeecCHHHHHHHHhc-CCCEEEeCcCCCCcccHHHHHHH-HHHHHHHHCCCCEEEEEcCCceee
Confidence 5689999999999999999999999999986 56789999999999999997654 468888899999999999999999
Q ss_pred cCCCCCCHHHHHHHH-HH----HHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhh-hhccc
Q 047474 96 NNKMGGDLKKIQTVG-RY----LIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQ-IMGRS 169 (326)
Q Consensus 96 ~~~~~~~~~~i~~~~-~~----~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~-~~~r~ 169 (326)
+|+. +.++++++. .+ +.+.++|+|+||+++.|++||+|. ....||.+++.+++++|+++++++.+ +.++
T Consensus 81 ~~~~--~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~--~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~- 155 (372)
T 1n3l_A 81 DNMK--APWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQ--LSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQ- 155 (372)
T ss_dssp TTTT--SCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTT--TSHHHHHHHHHHHTTSCHHHHHHHTTTTSCC-
T ss_pred CCCC--CHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeec--ccHHHHHHHHHHHhhCcHHHHHhchhhhhcc-
Confidence 9862 334443333 22 334579999999999999999973 22456776777888999999999754 2222
Q ss_pred ccCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCc
Q 047474 170 EQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSA 249 (326)
Q Consensus 170 ~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~ 249 (326)
.+++++|+|+||+|||||++++++|+||||.||++|++++|+++++++.. +|+.+++|+||+| +| +|||||.++++
T Consensus 156 -~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~-~p~~l~~pll~gl-dG-~KMSKS~~ns~ 231 (372)
T 1n3l_A 156 -VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYS-KRVHLMNPMVPGL-TG-SKMSSSEEESK 231 (372)
T ss_dssp -CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCC-CCEEEEECCCCCS-SC-C-------CCS
T ss_pred -cCCCcceeeecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCC-CCEEEecCccCCC-Cc-ccccCCCCCCe
Confidence 34579999999999999999999999999999999999999999999864 7999999999999 67 69999998779
Q ss_pred eecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCCceeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 250 IYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 250 I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
|||+|+|++|++||++|||||+++++|+|++|++++|||+.+.|+++|++++||+.++.++++|+++|...
T Consensus 232 I~L~d~p~~i~kKi~~A~td~~~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g 302 (372)
T 1n3l_A 232 IDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAE 302 (372)
T ss_dssp CBTTCCHHHHHHHHHTCCCCTTCCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTT
T ss_pred EeccCCHHHHHHHHHHccCCCCCCCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 9
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-68 Score=516.87 Aligned_cols=300 Identities=28% Similarity=0.417 Sum_probs=252.7
Q ss_pred CCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCC-eEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecce
Q 047474 14 STPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQP-ICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWF 92 (326)
Q Consensus 14 ~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~-~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~ 92 (326)
+++.|+++||++|++||++||+++++|+++|+++++| ++|+||+|||+|||||++.. ++.+++|++||+++++|||||
T Consensus 3 ~~~~~~~~~~~~l~~rg~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG~LHlG~~~~a-l~~~~~~q~g~~~ii~I~D~h 81 (394)
T 2dlc_X 3 SAATVDPNEAFGLITKNLQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGRPHCGYFVPM-TKLADFLKAGCEVTVLLADLH 81 (394)
T ss_dssp -----CHHHHHHHHHTTCSEEECHHHHHHHHHTSCSCCEEEEEECCCSCCBGGGHHHH-HHHHHHHHTTCEEEEEECHHH
T ss_pred ccccCCHHHHHHHHHcCcceecCHHHHHHHHHccCCCeEEEEEeCCCCCccHHHHHHH-HHHHHHHHcCCcEEEEEcCCc
Confidence 4567899999999999999999999999999875677 79999999999999997654 467778889999999999999
Q ss_pred eeecCCCCCCHHHHHHHHHHHH----HHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcc
Q 047474 93 AQLNNKMGGDLKKIQTVGRYLI----EIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGR 168 (326)
Q Consensus 93 a~~~~~~~~~~~~i~~~~~~~~----~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r 168 (326)
|+++++. .+++.++.+++++. +.|+|+|+||+++.|++||+|. .+ ..|+.+++.+++++|++++++..+.+.|
T Consensus 82 a~t~~~~-~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~-~~-~~~~~~~~~l~~~~t~~~l~r~~~~~~r 158 (394)
T 2dlc_X 82 AFLDNMK-APLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQ-LT-PDYTMDIFRLSNIVSQNDAKRAGADVVK 158 (394)
T ss_dssp HHHTTTS-SCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHH-TS-HHHHHHHHHHHTTSCHHHHHHHTTTTSC
T ss_pred cccCCCC-CcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhc-ch-HHHHHHHHHHhCcCcHHHHhcccHhhhc
Confidence 9998863 45677777765543 4688999999999999999975 22 3466667788889999999987665555
Q ss_pred cccCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCC
Q 047474 169 SEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSS 248 (326)
Q Consensus 169 ~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s 248 (326)
. .+++++|+|+||+|||||++++++++|++|.||++|++++|++++++|+. .|+++++|+||+| +|++|||||++++
T Consensus 159 ~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~-~p~~l~~pll~gl-~~G~KMSKS~~ns 235 (394)
T 2dlc_X 159 Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYK-KRAHLMNPMVPGL-AQGGKMSASDPNS 235 (394)
T ss_dssp C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCC-CCEEEEECCCCCC-C----------CC
T ss_pred c-cCCccceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCC-CCEEEecccccCC-CCCCcCCCCCCCC
Confidence 3 24679999999999999999999999999999999999999999999965 7999999999999 6237999999877
Q ss_pred ceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccCCCC--------ceeEeecccCCCCceecCHHHHHHHHHhh
Q 047474 249 AIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK--------KFVVERSEANGGNKTFETMKNLLLIMKKE 320 (326)
Q Consensus 249 ~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp~~~--------~~~i~r~~~~gg~~~y~~~eel~~~~~~~ 320 (326)
+|||+|+|++|++||++|+|+|+++++||++.|++|||||+.+ .|+|+|+++|++..++.++++|+++|..+
T Consensus 236 ~I~L~D~p~~i~kKI~ka~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g 315 (394)
T 2dlc_X 236 KIDLLEEPKQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEE 315 (394)
T ss_dssp SCBTTCCHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHTT
T ss_pred EEeccCCHHHHHHHHHHhcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999762 49999999999999999999999999874
No 10
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=9.2e-62 Score=477.72 Aligned_cols=257 Identities=21% Similarity=0.274 Sum_probs=216.4
Q ss_pred CCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEeccee
Q 047474 15 TPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFA 93 (326)
Q Consensus 15 ~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a 93 (326)
++.|+++|++++|+|++.|++++++|+++|++++.+++|+||+||| ++||||+++ ..++++||++||+++++|||+||
T Consensus 3 ~~~~~~~~~~~li~Rg~~e~~~~~~L~~~L~~~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta 81 (432)
T 1h3f_A 3 GTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTG 81 (432)
T ss_dssp --CCCHHHHHHHHHTTCSEEETHHHHHHHHHTCSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC-
T ss_pred CCCCCHHHHHHHHHcchHHhCCHHHHHHHHhcCCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceE
Confidence 4678999999999999999999999999997555667999999999 799999874 45899999999999999999999
Q ss_pred eecCCCCCC-------HHHHHHHHHHHHHHHHHcCCC--CCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhh
Q 047474 94 QLNNKMGGD-------LKKIQTVGRYLIEIWIAVGMR--TERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQ 164 (326)
Q Consensus 94 ~~~~~~~~~-------~~~i~~~~~~~~~~~~A~G~d--~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~ 164 (326)
+++||+|++ ++++++++..+.+.+. +|+| |++++|++||+|+ . ..+|..++++++++|+++|+++.+
T Consensus 82 ~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~-~--~~~~~~~l~l~~~~tv~~ml~~~~ 157 (432)
T 1h3f_A 82 MIGDPSGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWL-E--GLTFKEVVRLTSLMTVAQMLERED 157 (432)
T ss_dssp --------------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHH-T--TCBHHHHHHHHTTSBHHHHTTSHH
T ss_pred EecCCCCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCccc-c--cCcHHHHHHHhCcCcHHHHHhhhh
Confidence 999998754 6788888876666554 7888 9999999999986 3 346777778999999999999999
Q ss_pred hhcccc-cCccchhhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccC
Q 047474 165 IMGRSE-QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSK 243 (326)
Q Consensus 165 ~~~r~~-~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSK 243 (326)
+++|.+ ++++++|+|+||+|||||+++++||+||||.|||+|++++||+++++|.. +++++++|+||++ +|++||||
T Consensus 158 ~k~r~~~~~~is~~ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~-~~~~lt~pll~gl-dG~~KMSK 235 (432)
T 1h3f_A 158 FKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQS-PQVCFLMPLLVGL-DGREKMSK 235 (432)
T ss_dssp HHHHHHTTCCCBGGGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCC-CCEEEEECCCBCT-TSSSBCCG
T ss_pred HHHHhhcCCCCCccccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCC-CceEeecccccCC-CCccccCc
Confidence 999975 35789999999999999999999999999999999999999999999965 5788999999999 78679999
Q ss_pred CCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHHhc
Q 047474 244 SDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYII 286 (326)
Q Consensus 244 S~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~i 286 (326)
|.+ |+|||+|+|+++++||+++ .+++++.|+++|.
T Consensus 236 S~~-n~I~L~dsp~~i~~Ki~~~-------~d~~v~~~l~~ft 270 (432)
T 1h3f_A 236 SLD-NYIGLTEPPEAMFKKLMRV-------PDPLLPSYFRLLT 270 (432)
T ss_dssp GGT-CCCBTTSCHHHHHHHHHTS-------CGGGHHHHHHHHC
T ss_pred CCC-CeeCCCCCHHHHHHHHhCC-------CccHHHHHHHHcC
Confidence 985 7999999999999999987 5679999999963
No 11
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-60 Score=461.70 Aligned_cols=247 Identities=21% Similarity=0.252 Sum_probs=207.7
Q ss_pred HHHHhhcccccCHHHHHHHH---hcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHH-CCCeEEEEEecceeeecCCCC
Q 047474 25 RLVRSIGEECIQEDELLNLL---TKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTS-AGCKVKIWVADWFAQLNNKMG 100 (326)
Q Consensus 25 ~li~r~~~e~~~~~eL~~lL---~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~~~ 100 (326)
.+++||+ ++.++++++++ ++++.+++|+|++|||++||||+++.+ +.++||+ +||+++|+||||||+++++ .
T Consensus 48 ~~~~Rg~--i~~~~d~~~l~~~~~~~~p~~i~sG~~PTG~lHLGh~v~~~-~~~~lQ~~~g~~~~i~IaD~ha~~~~~-~ 123 (392)
T 3jxe_A 48 IFFRRKF--FFSHRDYDLILKDYEEGRGFFLYTGRGPSGPMHIGHIIPFF-ATKWLQEKFGVNLYIQITDDEKFLFKE-N 123 (392)
T ss_dssp HHHHTTS--EEEEESHHHHHHHHHTTCCCEEEEEECCSSCCBHHHHHHHH-HHHHHHHHHCCEEEEEECHHHHHHHCS-S
T ss_pred HHHhCcC--cccccCHHHHHHHHhcCCCeEEEeccCCCCchhHHHHHHHH-HHHHHHHhcCCceEEEecchHHhhcCC-C
Confidence 6778887 66666555544 445556799999999999999987553 4777998 8999999999999999875 4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhh
Q 047474 101 GDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL 180 (326)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~ 180 (326)
.+++++++++++++++|+|+|+||+|+.|++||+|. + ||.++.++++++|+++|+++.+++ +++++|+|+
T Consensus 124 ~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~-~----~~~~~~~l~~~~t~~~~~~~~~~~-----~~~~~g~f~ 193 (392)
T 3jxe_A 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT-K----IYEMAIPIAKKINFSMAKAVFGFT-----EQSKIGMIF 193 (392)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTST-H----HHHHHHHHHHHSBHHHHHHHHCCC-----TTSBHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhH-H----HHHHHHHHHhhCCHHHHhhhhccC-----CCCchHHHH
Confidence 799999999999999999999999999999999975 2 788888999999999999875432 457999999
Q ss_pred hhhhhhhhhccc-cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHH
Q 047474 181 YPCMQCADIFFL-KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEV 259 (326)
Q Consensus 181 YP~lQaaD~~~l-~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i 259 (326)
||+|||||++++ .+|++|||.||++|++++||+|+|+|+. +|.++++|+||||+++++|||||.++|+|||+|+|++|
T Consensus 194 YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~-~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I 272 (392)
T 3jxe_A 194 FPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYY-KTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDV 272 (392)
T ss_dssp HHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTSC-CCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHH
T ss_pred HHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCCC-CCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHH
Confidence 999999999999 5999999999999999999999999964 79999999999994443699999987799999999999
Q ss_pred HHHHHh-ccCCC-----------CCCCCCcHHHHHHHhc
Q 047474 260 NVKIKK-AYCPP-----------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 260 ~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~i 286 (326)
++||++ |+||+ ++|+.+++++|++++.
T Consensus 273 ~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~ 311 (392)
T 3jxe_A 273 EKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFF 311 (392)
T ss_dssp HHHHHTCC--------------------CHHHHHHHHTT
T ss_pred HHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHH
Confidence 999999 99996 3566777788888864
No 12
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=9.3e-61 Score=455.41 Aligned_cols=226 Identities=19% Similarity=0.282 Sum_probs=201.1
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
..++|+||+|||++||||++..+.++++||+ ||+++++||||||+++++ ++++++++++++++.|+|+|+||+|++
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~~---~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSSQ---DGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTCC---CHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCCC---CHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 3469999999999999998644447899999 999999999999999875 899999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc-cCccchhhhhhhhhhhhhhccccCcEEEeccchhHHH
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE-QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVN 207 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~-~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~ 207 (326)
||+||+|. ++.+++|.+ ++++++++|.|+.++++|.+ .+++++|+|+||+||||||+++++|+||||.|||+|+
T Consensus 79 i~~qS~~~-~~~el~~~l----~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi 153 (322)
T 3tzl_A 79 FWLQSDVK-EVMELYWIL----SQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHV 153 (322)
T ss_dssp EEEGGGCT-HHHHHHHHH----GGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHH
T ss_pred EEECCcch-hHHHHHHHH----hccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHH
Confidence 99999965 777777765 45899999999999998865 3568999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcC-----Cccee---ecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCC------CCCC
Q 047474 208 VLAREYCDDIKRKN-----KPIIL---SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP------PKIV 273 (326)
Q Consensus 208 ~lar~~~~k~~~~~-----~p~~l---~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~------~~~~ 273 (326)
+++||+++|+|+.+ .|..+ ++|+|||| +| +|||||.+ |+|||+|+|++|++||++|+|| +++|
T Consensus 154 ~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~-n~I~L~d~p~~i~~KI~~a~td~~~~~~~~~~ 230 (322)
T 3tzl_A 154 EIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ-NTIDIFSSEKTLKKQISSIVTDSTALEDPKDH 230 (322)
T ss_dssp HHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCT-TS-SBCCGGGT-CCCBSSCCHHHHHHHHHTCCCCCCCTTSCCCG
T ss_pred HHHHHHHHHhcccccCCCCCchhhhccccccccCC-CC-CcCCCCCC-CceecCCCHHHHHHHHHhccCCCccccCCCCC
Confidence 99999999999732 23332 47999999 77 79999996 6999999999999999999998 4689
Q ss_pred CCCcHHHHHHHhc
Q 047474 274 EGNPCLEYIKYII 286 (326)
Q Consensus 274 ~~n~vl~~~~~~i 286 (326)
++|++++|++++.
T Consensus 231 ~~~~v~~~~~~~~ 243 (322)
T 3tzl_A 231 ENCNIFKIAKLFL 243 (322)
T ss_dssp GGCHHHHHHGGGC
T ss_pred cchhHHHHHHHhC
Confidence 9999999999963
No 13
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=5.2e-60 Score=452.95 Aligned_cols=228 Identities=24% Similarity=0.307 Sum_probs=201.3
Q ss_pred CeEEEcccCCCCccchhhhhHHHHHHHHHHCC-CeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 50 PICYDGFEPSGRMHIAQGVMKAISVNKLTSAG-CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 50 ~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG-~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
+++|+||+|||+|||||++..+.+|.+||++| |+++++||||||+++++ +.+++.++++++++++.|+|+|+||++++
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~-~~~~~~i~~~~~~~~~~~la~Gldp~k~~ 80 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPL-AYDPSTLAQRTFEAALVNIAAGLDPEKVT 80 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTT-TSCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCC-CCCHHHHHHHHHHHHHHHHHhCCChhheE
Confidence 68999999999999999875555799999999 99999999999999984 45899999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc-cCccchhhhhhhhhhhhhhccccCcEEEeccchhHHH
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE-QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVN 207 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~-~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~ 207 (326)
||+||+|. ++.+++|.+.+ ++++++|.|+.++++|.. .+++++|+|+||+|||||++++++|+||||.|||+|+
T Consensus 81 i~~qS~~~-~~~el~~~l~~----~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i 155 (337)
T 2el7_A 81 LFVQSHVP-EHTELSWVFTT----LTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHI 155 (337)
T ss_dssp EEEGGGST-HHHHHHHHHHH----TSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHH
T ss_pred EEEcCcch-hhHHHHHHHHc----cCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHH
Confidence 99999975 68888886554 899999999999999875 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc-----CCcceeec---CcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCC--------C
Q 047474 208 VLAREYCDDIKRK-----NKPIILSH---HMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPP--------K 271 (326)
Q Consensus 208 ~lar~~~~k~~~~-----~~p~~l~~---~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~--------~ 271 (326)
+++||+++|+|+. ..|..+++ |+|||| +|++|||||.+ |+|||+|+|++|++||++|+|++ +
T Consensus 156 ~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~-n~I~L~d~p~~i~~Ki~~a~td~~~~~~~~~~ 233 (337)
T 2el7_A 156 ELTREIARRFNHLFGETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG-NTIGLLEPEESIWQKIQHLPDDPQRIRLSDPG 233 (337)
T ss_dssp HHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCT-TSSSBCCTTTT-CCCBSSSCHHHHHHHHHTCCCCC---------
T ss_pred HHHHHHHHHHHhhcCcccCCCeeecccccccccCC-CCccccCCCCC-CeeeCcCCHHHHHHHHHhCCCCCccccccCCC
Confidence 9999999999742 34655554 899999 66679999996 69999999999999999999996 6
Q ss_pred CCCCCcHHHHHHHh
Q 047474 272 IVEGNPCLEYIKYI 285 (326)
Q Consensus 272 ~~~~n~vl~~~~~~ 285 (326)
+|++|++++|+++|
T Consensus 234 ~p~~~~v~~~~~~~ 247 (337)
T 2el7_A 234 DPERTILFTYLSYF 247 (337)
T ss_dssp ----CHHHHHHHHH
T ss_pred CCchhhHHHHHHHc
Confidence 79999999999996
No 14
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=9.6e-61 Score=463.44 Aligned_cols=240 Identities=23% Similarity=0.322 Sum_probs=191.7
Q ss_pred HHHHHHHHhc--CC-CC-e----EEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHH
Q 047474 37 EDELLNLLTK--KP-QP-I----CYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQT 108 (326)
Q Consensus 37 ~~eL~~lL~~--~~-~~-~----iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~ 108 (326)
+++|+.+++. ++ +| + +|+|++|||.+||||++..+.++++||+ |++++++||||||+++ + .+++++++
T Consensus 15 hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~-~~~~~~~IaD~hAlt~-~--~~~~~lr~ 90 (388)
T 3prh_A 15 LLGLDSTENLYFQGIDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQH-DYNSYFCIVDQHAITV-P--QDRLELRK 90 (388)
T ss_dssp --------------------CCEEEEEECCCSCCBHHHHHHTHHHHHHTTT-TSEEEEEECHHHHTTS-C--CCHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCcccCCeEEEeeCCCCcchHHHHHHHHHHHHHHHc-cCcEEEEEecceeeec-C--CCHHHHHH
Confidence 4555555543 33 55 3 9999999999999997655446899998 9999999999999997 3 69999999
Q ss_pred HHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccccc-Cccchhhhhhhhhhhh
Q 047474 109 VGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQ-DELTAAQILYPCMQCA 187 (326)
Q Consensus 109 ~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~-~~~~~~~~~YP~lQaa 187 (326)
++++++++|+|+|+||+|++||+||+ ++++.+++|.+.+ .++++++.|+.+++++... +.+++|+|+||+||||
T Consensus 91 ~~~~~aa~~lA~GlDp~kt~if~qS~-v~~~~el~w~l~~----~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQAA 165 (388)
T 3prh_A 91 NIRNLAALYLAVGLDPEKATLFIQSE-VPAHAQAGWMMQC----VAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMAA 165 (388)
T ss_dssp HHHHHHHHHHHTTCCTTTEEEEEGGG-STHHHHHHHHHHT----TSCHHHHHTTC----------CCBHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHeEEEeccc-ccchHHHHHHHHh----hccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHHH
Confidence 99999999999999999999999999 5689999998876 7899999999999987643 5689999999999999
Q ss_pred hhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcc-eee-------cCcccCCCCCCccccCCCC--CCceecCCCHH
Q 047474 188 DIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPI-ILS-------HHMLPGLQQGQEKMSKSDP--SSAIYMEDEEA 257 (326)
Q Consensus 188 D~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~-~l~-------~~~lp~L~~g~~KMSKS~~--~s~I~L~D~~~ 257 (326)
||+++++|+||||.||++|++++||+|+|||+.++++ .++ .++||||++|++|||||+| +|+|||+|+|+
T Consensus 166 DIl~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~ 245 (388)
T 3prh_A 166 DILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPK 245 (388)
T ss_dssp HHHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHH
T ss_pred HHHHhCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHH
Confidence 9999999999999999999999999999999765432 222 3578999877789999997 79999999999
Q ss_pred HHHHHHHhccCCCCC-----CCCCc----HHHHHHHh
Q 047474 258 EVNVKIKKAYCPPKI-----VEGNP----CLEYIKYI 285 (326)
Q Consensus 258 ~i~~KI~kA~c~~~~-----~~~n~----vl~~~~~~ 285 (326)
+|++||++|+||+.. +++|| +++|++.+
T Consensus 246 ~I~kKI~ka~TD~~~~~~~~~~~~p~v~~l~~i~~~~ 282 (388)
T 3prh_A 246 QLEKKIKSAVTDSEGIVKFDKENKPGVSNLLTIYSIL 282 (388)
T ss_dssp HHHHHHHTCCCCSSCCCCCCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCCcccCCCCCCCCcchHHHHHHhc
Confidence 999999999999632 23444 88888874
No 15
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-60 Score=455.49 Aligned_cols=229 Identities=27% Similarity=0.327 Sum_probs=200.9
Q ss_pred CCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 047474 48 PQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 48 ~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
-+|++|+|++|||+|||||+++.+.+|++||++|++++++||||||+++++ .+++.++++++++++.|+|+|+||+|+
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~--~dp~~~~~~~~~~~~~~lA~Gldp~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHY--DDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHT--TCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCC--CCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 478999999999999999977554489999999999999999999999853 566789999999999999999999999
Q ss_pred EEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhc---ccc-cCccchhhhhhhhhhhhhhccccCcEEEeccch
Q 047474 128 EFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMG---RSE-QDELTAAQILYPCMQCADIFFLKADICQLGMDQ 203 (326)
Q Consensus 128 ~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~---r~~-~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ 203 (326)
.||+||+|. ++.+++|.+. +.+++++|.|+.++++ |.. .+++++|+|+||+|||||++++++|+||||.||
T Consensus 89 ~if~qS~~~-~~~el~~~l~----~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ 163 (340)
T 2g36_A 89 VIFVQSGVK-EHAELALLFS----MIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQ 163 (340)
T ss_dssp EEEEGGGCT-HHHHHHHHHH----TTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGG
T ss_pred EEEECCchH-HHHHHHHHHH----ccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhhHHHhCCCEEEcccch
Confidence 999999964 6766666555 4899999999999999 764 356899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcC-----Ccc--eeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCC------
Q 047474 204 RKVNVLAREYCDDIKRKN-----KPI--ILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPP------ 270 (326)
Q Consensus 204 ~~~~~lar~~~~k~~~~~-----~p~--~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~------ 270 (326)
++|++++||+++|+|+.+ .|. +.++|+|||| +|+ |||||.+ |+|||+|+|++|++||++|+|++
T Consensus 164 ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gl-dG~-KMSKS~~-n~I~L~dsp~~i~~Ki~~a~td~~~~~~~ 240 (340)
T 2g36_A 164 VYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGT-DGR-KMSKSYG-NIINLEISEKELEQTILRMMTDPARVRRS 240 (340)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCT-TSS-CCCGGGT-CCCBTTCCHHHHHHHHHTCCCCTTCSSTT
T ss_pred HHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCC-Ccc-ccCCCCC-CeEeeeCCHHHHHHHHHhCCCCccccccc
Confidence 999999999999998542 354 3347999999 684 9999996 79999999999999999999995
Q ss_pred --CCCCCCcHHHHHHHhc
Q 047474 271 --KIVEGNPCLEYIKYII 286 (326)
Q Consensus 271 --~~~~~n~vl~~~~~~i 286 (326)
++|++|++++|+++|.
T Consensus 241 ~~~~p~~~~v~~~~~~f~ 258 (340)
T 2g36_A 241 DPGNPENCPVWKYHQAFD 258 (340)
T ss_dssp SCCCGGGCHHHHHHHHTT
T ss_pred CCCCCchhHHHHHHHHHC
Confidence 7899999999999965
No 16
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.1e-59 Score=452.80 Aligned_cols=230 Identities=23% Similarity=0.277 Sum_probs=205.3
Q ss_pred CCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 047474 48 PQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 48 ~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
+++++|+||+|||.|||||++..+.+|.+||++ |+++++||||||+++|+ .+++++++++++++++|+|+|+||+|+
T Consensus 21 ~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~-~~~~~~IaD~ha~~~~~--~~~e~i~~~~~~~~~~~la~Gldp~k~ 97 (351)
T 1yi8_B 21 ARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDE-AELFVLLADVQALTDHF--DRPEQVRENVLAVALDYLAAGLDPQKT 97 (351)
T ss_dssp CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSS-SEEEEEECHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCCTTTE
T ss_pred CCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHh-CCeEEEEecchhhcCCC--CCHHHHHHHHHHHHHHHHHhCCChhhc
Confidence 467899999999999999977554578889998 99999999999999975 799999999999999999999999999
Q ss_pred EEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc----cCccchhhhhhhhhhhhhhccccCcEEEeccch
Q 047474 128 EFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE----QDELTAAQILYPCMQCADIFFLKADICQLGMDQ 203 (326)
Q Consensus 128 ~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~----~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ 203 (326)
.||+||+|. ++.+++|.+. .++++++|.|+.++++|.+ .+++++|+|+||+|||||++++++|+||||.||
T Consensus 98 ~i~~qS~~~-~~~el~~~l~----~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ 172 (351)
T 1yi8_B 98 TCVVQSAVP-ELAELTVYFL----NLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQ 172 (351)
T ss_dssp EEEEGGGCT-HHHHHHHHHH----TTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGG
T ss_pred EEEEcCchh-hHHHHHHHHh----ccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCc
Confidence 999999965 6777777555 4899999999999999874 356899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcC-----Ccce-e-ecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCC------
Q 047474 204 RKVNVLAREYCDDIKRKN-----KPII-L-SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPP------ 270 (326)
Q Consensus 204 ~~~~~lar~~~~k~~~~~-----~p~~-l-~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~------ 270 (326)
|+|++++||+++|+|+.+ .|.. + ++|+|||| +|++|||||.+ |+|||+|+|++|++||++|+|++
T Consensus 173 ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~l-dG~~KMSKS~~-n~I~L~d~p~~i~~Ki~~a~td~~~~~~~ 250 (351)
T 1yi8_B 173 LPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGL-DGQAKMSKSLG-NAIALGDSADEVARKVMGMYTDPGHLRAS 250 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCT-TSSSCCCTTTT-CCCBTTCCHHHHHHHHHTCCCCTTCCSTT
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCC-CCccccCCCCC-CeecCCCCHHHHHHHHHhcCCCccccccc
Confidence 999999999999998532 3543 3 37999999 78679999996 69999999999999999999997
Q ss_pred --CCCCCCcHHHHHHHhcc
Q 047474 271 --KIVEGNPCLEYIKYIIF 287 (326)
Q Consensus 271 --~~~~~n~vl~~~~~~if 287 (326)
+++++|+++.|++++++
T Consensus 251 ~~~~~~~~~~~~~l~~~~~ 269 (351)
T 1yi8_B 251 DPGRVEGNPVFTFLDAFDP 269 (351)
T ss_dssp SCCCCTTCTTHHHHHHHCS
T ss_pred CCCCCccchHHHHHHHHcC
Confidence 78999999999999764
No 17
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.8e-59 Score=446.84 Aligned_cols=249 Identities=13% Similarity=0.154 Sum_probs=218.3
Q ss_pred HHHHHhhcccccC-HHHHHHHHhcCCCCeEEEcccCCCC-ccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCC
Q 047474 24 FRLVRSIGEECIQ-EDELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGG 101 (326)
Q Consensus 24 ~~li~r~~~e~~~-~~eL~~lL~~~~~~~iy~G~~PTG~-lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~ 101 (326)
-+|++|++.+..+ +++|+++|+ ++++++|+||+|||. +||||+++ ..++++||++||+++++||||||+++||+|+
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~ 85 (322)
T 2yxn_A 8 KQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFK 85 (322)
T ss_dssp HHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCc
Confidence 4688899887555 889999998 446689999999995 99999774 4589999999999999999999999999765
Q ss_pred -------CHHHHHHHHHH---HHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc-
Q 047474 102 -------DLKKIQTVGRY---LIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE- 170 (326)
Q Consensus 102 -------~~~~i~~~~~~---~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~- 170 (326)
+++++++++++ +++.++|+|+||+++.|+.||+|+..++.+. ++.++++++++++|.++.++++|.+
T Consensus 86 ~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~--~l~~~~~~~~v~~m~~~~~~k~r~~~ 163 (322)
T 2yxn_A 86 AAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLT--FLRDIGKHFSVNQMINKEAVKQRLNR 163 (322)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHH--HHHHTGGGCCHHHHTTCHHHHHHHHC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHH--HHHHHhccccHHHHhhhHHHHHHhcc
Confidence 89999999954 4556788999999999999999875444322 3446889999999999999998875
Q ss_pred -cCccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCC
Q 047474 171 -QDELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSD 245 (326)
Q Consensus 171 -~~~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~ 245 (326)
++++++|+|+||+||||||+++ +|++++||.|||+|++++||+++|+|+. +++.+++|+||++ +| +|||||.
T Consensus 164 ~~~~is~g~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~-~~~~l~~pll~gl-dG-~KMSKS~ 240 (322)
T 2yxn_A 164 EDQGISFTEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQN-QVFGLTVPLITKA-DG-TKFGKTE 240 (322)
T ss_dssp TTCCCCHHHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCC-CCEEEECCCCBCT-TS-CBTTEET
T ss_pred CCCCccchhhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCC-CceeeccCccCCC-Cc-ccccCCC
Confidence 4568999999999999999999 9999999999999999999999999974 6888999999999 78 6999999
Q ss_pred CCCceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhcc
Q 047474 246 PSSAIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF 287 (326)
Q Consensus 246 ~~s~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~if 287 (326)
+ |+|||+| +|+++++||+++ ++|+|..|++++.+
T Consensus 241 ~-n~I~L~d~~tsp~~~~~ki~~~-------~d~~v~~~l~~~~~ 277 (322)
T 2yxn_A 241 G-GAVWLDPKKTSPYKFYQFWINT-------ADADVYRFLKFFTF 277 (322)
T ss_dssp T-EECBSSTTTSCHHHHHHHHHTC-------CHHHHHHHHHHHCC
T ss_pred C-CeeeccCCCCCHHHHHHHHhCC-------CcccHHHHHHHHHc
Confidence 6 6999999 999999999986 67999999999765
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.3e-59 Score=481.04 Aligned_cols=259 Identities=22% Similarity=0.340 Sum_probs=229.5
Q ss_pred CCe-EEEcccCCCCccchhhhhHHHH-HHHHHHC--CCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCC
Q 047474 49 QPI-CYDGFEPSGRMHIAQGVMKAIS-VNKLTSA--GCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRT 124 (326)
Q Consensus 49 ~~~-iy~G~~PTG~lHLG~~~~~~~~-~~~lq~a--G~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~ 124 (326)
.|. ++|+- |||++||||.++.. + +++||+. ||+++|+||||||+++||+|++++++++++.|++++|+|+|+|+
T Consensus 381 ~~l~~~~~p-s~g~lHLGh~v~~~-k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 381 KPHACMWMP-ALLKVPLDVAEGMI-KVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp SCEEEEECC-CCSSCBHHHHHHHH-HHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CcceEEecC-CCCCcccchHHHHH-HHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 454 78887 99999999987664 5 8899886 99999999999999999999999999999999999999999997
Q ss_pred CceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhhhhhhhhhccccCcEEEeccchh
Q 047474 125 ERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQR 204 (326)
Q Consensus 125 ~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~ 204 (326)
+++|++||+|+.....+||.+++++++.+|++||+++. + ++.+++|+|+||+|||||++++++|+++||.||+
T Consensus 459 -k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---~---~~~~~i~~~~YPlmQaaDi~~l~aDi~~gG~DQ~ 531 (690)
T 3p0j_A 459 -SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---G---GEVRNAGQVIAALMRVATALMLSVSHVISTSLDG 531 (690)
T ss_dssp -TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---T---SCCSSHHHHHHHHHHHHHHHHTTCSEEEECSTTT
T ss_pred -CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---C---CCCcchHHHHHHHHHHhhhhccCCCEEecccccH
Confidence 89999999998655568999999999999999999864 2 3557999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHhccCCCCCCCCCcHHHHHHH
Q 047474 205 KVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKY 284 (326)
Q Consensus 205 ~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~ 284 (326)
++++|+||++++++ +|+.++++++|+|++++.+||||.++|+|+|+|+|++|++||++|||+|+ +++|||++|++|
T Consensus 532 ~~~~LaRd~~~~~~---~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~kA~c~p~-ve~np~l~~~~~ 607 (690)
T 3p0j_A 532 HINAFAREYTKERI---DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKKAYSAPN-EEANPVISVAQH 607 (690)
T ss_dssp TTTHHHHHHTTTCS---EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHHSCCCTT-CSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHHhcCCCC-CCCChHHHHHHH
Confidence 99999999999864 57788889999996665555677789999999999999999999999997 899999999999
Q ss_pred hccCCCCceeEeecccCCCCceecCHHHHHHHHHhhh
Q 047474 285 IIFPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEI 321 (326)
Q Consensus 285 ~ifp~~~~~~i~r~~~~gg~~~y~~~eel~~~~~~~~ 321 (326)
++++ .+.|+|+|+++|||+++|+++|||+++|+.+.
T Consensus 608 ~~~~-~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~ 643 (690)
T 3p0j_A 608 LLAQ-HGALSIERGEANGGNVSYNTPEALVADCGSGA 643 (690)
T ss_dssp HHHH-HSCEEECCCTTTTCCEEESSHHHHHHHHHSSS
T ss_pred Hhcc-CCceEEechhhhCCCCCccCHHHHHHHHHcCC
Confidence 8765 57899999999999999999999999998763
No 19
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=3.8e-60 Score=453.49 Aligned_cols=227 Identities=22% Similarity=0.293 Sum_probs=191.7
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
+|++|+|++|||.+||||++..+.+|.+||+ +|+++|+||||||+++ + .+++++++++++++++|+|+|+||+|++
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~-~--~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 81 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITV-R--QDPQALHEATLDALAICLAVGVDPKKST 81 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTS-C--CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcC-C--CCHHHHHHHHHHHHHHHHHcCCChhhcE
Confidence 4789999999999999997643347889999 6999999999999997 3 6999999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhc---ccccCccchhhhhhhhhhhhhhccccCcEEEeccchhH
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMG---RSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRK 205 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~---r~~~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~ 205 (326)
||+||+| ++|.+++|.+.+ + ++++++.|+.+++. |. .+++++|+|+||+||||||+++++|+||||.||++
T Consensus 82 i~~qS~v-~~~~el~~~l~~-~---~~~~~l~R~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~ 155 (341)
T 3sz3_A 82 LFVQSHV-PEHAQLGWVLNC-Y---TQMGELSRMTQFKDKSARY-ANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQ 155 (341)
T ss_dssp EEEGGGC-THHHHHHHHHHT-T---SCHHHHHTCHHHHHHHHHH-GGGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHH
T ss_pred EEeccch-hhhHHHHHHHHh-h---ccHHHHHHHHHHHHHHhhc-cCCCChhhHHhHHHHHHHHHHcCCCEEEeccchHH
Confidence 9999995 589999999654 4 55555555554543 43 24579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcCC--------cc-eee--cCcccCCCCCCccccCCCC--CCceecCCCHHHHHHHHHhccCCCC-
Q 047474 206 VNVLAREYCDDIKRKNK--------PI-ILS--HHMLPGLQQGQEKMSKSDP--SSAIYMEDEEAEVNVKIKKAYCPPK- 271 (326)
Q Consensus 206 ~~~lar~~~~k~~~~~~--------p~-~l~--~~~lp~L~~g~~KMSKS~~--~s~I~L~D~~~~i~~KI~kA~c~~~- 271 (326)
|++++||+|+|||+.++ |. +++ +++||||++|++|||||+| +|+|||+|+|++|++||++|+||+.
T Consensus 156 hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 156 HLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 99999999999995432 22 233 4799999778789999998 7999999999999999999999964
Q ss_pred ----------CCCCCcHHHHHHHh
Q 047474 272 ----------IVEGNPCLEYIKYI 285 (326)
Q Consensus 272 ----------~~~~n~vl~~~~~~ 285 (326)
+|+.++++.|++.+
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~ 259 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAA 259 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHH
T ss_pred CcccccCCCCCcchhHHHHHHHHc
Confidence 33444577887774
No 20
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-58 Score=454.99 Aligned_cols=251 Identities=12% Similarity=0.135 Sum_probs=222.1
Q ss_pred HHHHHhhccc-ccCHHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCC-
Q 047474 24 FRLVRSIGEE-CIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMG- 100 (326)
Q Consensus 24 ~~li~r~~~e-~~~~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~- 100 (326)
-+|++||+.+ +..+++|+++|+. +++++|+||+||| ++||||+++ ..++++||++||+++++|||+||+++||+.
T Consensus 7 ~~L~~RG~~~~~~~~e~L~~~L~~-~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~ 84 (432)
T 2jan_A 7 DELSWRGLIAQSTDLDTLAAEAQR-GPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRDV 84 (432)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCCT
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCccc
Confidence 4688999887 7778999999974 4668999999999 799999654 457999999999999999999999999863
Q ss_pred -----CCHHHHHHHHHHHH---HHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccC
Q 047474 101 -----GDLKKIQTVGRYLI---EIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQD 172 (326)
Q Consensus 101 -----~~~~~i~~~~~~~~---~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~ 172 (326)
.+++++++|++++. +.++++|+||+++.|++||+|+..++ +|.++.++++++++++|+++.+|++|..++
T Consensus 85 ~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~--~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~ 162 (432)
T 2jan_A 85 GERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLS--AIEFLRDIGKHFSVNVMLARDTIRRRLAGE 162 (432)
T ss_dssp TTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCB--HHHHHHHTGGGCBHHHHHHSHHHHHHTSTT
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCc--HHHHHHHHhccCcHHHHhcchHHhhhhcCC
Confidence 35789999998774 55788999999999999999874443 777788899999999999999999998556
Q ss_pred ccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCC
Q 047474 173 ELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSS 248 (326)
Q Consensus 173 ~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s 248 (326)
++++|+|+||+|||||++++ +|++||||.|||+|++++||+++|+|.. +|+.++.|+||++ +| +|||||.+++
T Consensus 163 ~is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~-~~~~l~~plL~~l-dG-~KMSKS~~ns 239 (432)
T 2jan_A 163 GISYTEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGA-TVHALTVPLVTAA-DG-TKFGKSTGGG 239 (432)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCC-CCEEEECCCCBCT-TS-CBTTBCSSSC
T ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCC-CccccccccccCC-Cc-CcCCCCCCCC
Confidence 78999999999999999999 9999999999999999999999999975 6889999999999 88 6999999766
Q ss_pred ceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccC
Q 047474 249 AIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP 288 (326)
Q Consensus 249 ~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp 288 (326)
+|||+| +|+++++||+++ .++.|..|++++.|.
T Consensus 240 aI~L~d~~tsp~~i~qki~~~-------~D~~v~~~l~l~t~~ 275 (432)
T 2jan_A 240 SLWLDPQMTSPYAWYQYFVNT-------ADADVIRYLRWFTFL 275 (432)
T ss_dssp BCBSSTTTSCHHHHHHHHHTC-------CHHHHHHHHHHHSCC
T ss_pred eEEccCCCCCHHHHHHHHhcC-------CchhHHHHHHHHHcC
Confidence 999999 999999999985 467799999997653
No 21
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=4.6e-59 Score=446.26 Aligned_cols=216 Identities=20% Similarity=0.305 Sum_probs=184.9
Q ss_pred CCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 047474 48 PQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 48 ~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
.+|++|+|++|||.+||||++..+.+|.+||+ +|+++|+||||||+++. .+++++++++++++++|+|+|+||+|+
T Consensus 14 ~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~-~~~~~~~iaD~hA~t~~---~~~~~~~~~~~~~~~~~lA~GlDp~k~ 89 (346)
T 3n9i_A 14 SKPIVFSGAQPSGELTIGNYMGALRQWVQMQD-DYDCIYCIVDLHAITAR---QDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp -CCEEEEEECSCSCCBHHHHHHTHHHHHTTTT-TSEEEEEECHHHHTTSC---CCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCCEEEECcCCCCcccHHHHHHHHHHHHHHHh-hCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 36789999999999999997644447888998 69999999999999973 699999999999999999999999999
Q ss_pred EEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc--cCccchhhhhhhhhhhhhhccccCcEEEeccchhH
Q 047474 128 EFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE--QDELTAAQILYPCMQCADIFFLKADICQLGMDQRK 205 (326)
Q Consensus 128 ~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~--~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~ 205 (326)
+||+||+ +++|.++||.+.+ + ++++++.|+.+++++.. .+++++|+|+||+||||||+++++|+||||.||++
T Consensus 90 ~if~qS~-v~~~~el~~~l~~-~---~~~~~l~R~~~~k~~~~~~~~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~ 164 (346)
T 3n9i_A 90 TIFVQSH-VPEHSQLSWALNC-Y---TYFGELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQ 164 (346)
T ss_dssp EEEEGGG-CTHHHHHHHHHHT-T---SBHHHHHTCHHHHHHHHHSGGGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHH
T ss_pred EEEeccc-cccchHHHHHHHH-H---hhHHHHHHHHHHHHHHhccCCCCCchhHHhHHHHHHHHHHhCceEEEeccchHH
Confidence 9999999 5589999999765 4 55666666655554321 24579999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcC-----Ccceee---cCcccCCCCCCccccCCCCC--CceecCCCHHHHHHHHHhccCCCCC
Q 047474 206 VNVLAREYCDDIKRKN-----KPIILS---HHMLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKAYCPPKI 272 (326)
Q Consensus 206 ~~~lar~~~~k~~~~~-----~p~~l~---~~~lp~L~~g~~KMSKS~~~--s~I~L~D~~~~i~~KI~kA~c~~~~ 272 (326)
|++++||+|+|+|+.+ .|..+. .++||||+||++|||||+++ |+|||+|+|++|++||++||||+++
T Consensus 165 hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~~ 241 (346)
T 3n9i_A 165 HLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDE 241 (346)
T ss_dssp HHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCCS
T ss_pred HHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCCC
Confidence 9999999999999543 233232 37899998887899999986 8999999999999999999999864
No 22
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2.3e-58 Score=440.13 Aligned_cols=228 Identities=23% Similarity=0.309 Sum_probs=199.4
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
+|++|+|++|||++||||++..+.+|.+||+ ||+++++||||||+++ + .+++++++++++++++|+|+|+||+++.
T Consensus 1 ~~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~-~--~~~e~i~~~~~~~~~~~la~Gldp~k~~ 76 (328)
T 1i6k_A 1 MKTIFSGIQPSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITV-W--QDPHELRQNIRRLAALYLAVGIDPTQAT 76 (328)
T ss_dssp CCEEEEEECCCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTS-C--CCHHHHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CCEEEEeeCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecC-C--CCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 3689999999999999997655557888998 9999999999999998 4 6999999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc-cCccchhhhhhhhhhhhhhccccCcEEEeccchhHHH
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE-QDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVN 207 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~-~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~ 207 (326)
||+||+| +++.+++|.+.+ .++++++.|+.+++++.. .+++++|+|+||+|||||++++++|+||||.||++|+
T Consensus 77 if~qS~~-~~~~~l~w~l~~----~~~~~~l~r~~~~k~~~~~~~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~i 151 (328)
T 1i6k_A 77 LFIQSEV-PAHAQAAWMLQC----IVYIGELERMTQFKEKSAGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHI 151 (328)
T ss_dssp EEEGGGC-THHHHHHHHHHH----HSCHHHHHTCHHHHHHHTTCSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHH
T ss_pred EEecCch-hhhhHHHHHHhc----cccHHHHHHHHHHHHHHhccCCCCchhhccHHHHHHHHHHhCCCEEecccchHHHH
Confidence 9999995 689999999987 578888888888877542 2568999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcC-----Ccceee---cCcccCCCCCCccccCCCCCCc--eecCCCHHHHHHHHHhccCCCC------
Q 047474 208 VLAREYCDDIKRKN-----KPIILS---HHMLPGLQQGQEKMSKSDPSSA--IYMEDEEAEVNVKIKKAYCPPK------ 271 (326)
Q Consensus 208 ~lar~~~~k~~~~~-----~p~~l~---~~~lp~L~~g~~KMSKS~~~s~--I~L~D~~~~i~~KI~kA~c~~~------ 271 (326)
+++||+++|+|+.+ .|..+. +|+||||++|++|||||.++++ |||+|+|++|++||++|+|+|.
T Consensus 152 el~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~~~~~ 231 (328)
T 1i6k_A 152 ELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYD 231 (328)
T ss_dssp HHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCCCCCB
T ss_pred HHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccccccC
Confidence 99999999999522 355443 6999999555579999998657 9999999999999999999984
Q ss_pred ---CCCCCcHHHHHHHh
Q 047474 272 ---IVEGNPCLEYIKYI 285 (326)
Q Consensus 272 ---~~~~n~vl~~~~~~ 285 (326)
+|+.++++.|++++
T Consensus 232 ~~~~p~v~~~~~~~~~~ 248 (328)
T 1i6k_A 232 KEAKPGISNLLNIYSTL 248 (328)
T ss_dssp TTTBHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHC
Confidence 35566888888874
No 23
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=7.1e-58 Score=449.18 Aligned_cols=248 Identities=15% Similarity=0.172 Sum_probs=222.7
Q ss_pred HHHHHhhccc-ccCHHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCC
Q 047474 24 FRLVRSIGEE-CIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGG 101 (326)
Q Consensus 24 ~~li~r~~~e-~~~~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~ 101 (326)
-+|++|++.+ +..+++|+++|+. +++++|+||+||| ++||||+++ ..++++||++||+++++|||+||+++||+|+
T Consensus 7 ~~l~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk 84 (420)
T 1jil_A 7 EDLKWRGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGK 84 (420)
T ss_dssp HHHHHTTCCCCBSCHHHHHHHHHH-SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCcc
Confidence 4688899887 7778999999974 3667999999999 599999874 4589999999999999999999999999764
Q ss_pred -------CHHHHHHHHHHHHHHHHHcCCCC---CceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhccccc
Q 047474 102 -------DLKKIQTVGRYLIEIWIAVGMRT---ERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQ 171 (326)
Q Consensus 102 -------~~~~i~~~~~~~~~~~~A~G~d~---~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~ 171 (326)
+++++++|++++.+++.++ +|| +++.++.||+|+..++...| +.++++++++++|+++.+++.|. +
T Consensus 85 ~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~--l~~~~~~~tv~~m~~~~~~k~r~-~ 160 (420)
T 1jil_A 85 SEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISF--LRDYGKHVGVNYMLGKDSIQSRL-E 160 (420)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHH--HHHTGGGCCHHHHHTCGGGHHHH-T
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHH--HHHHhccccHHHHhcchhhhhhc-c
Confidence 7899999999999999998 888 99999999999866665555 66799999999999999999887 4
Q ss_pred Cccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHh-cCcCCcceeecCcccCCCCCCccccCCCC
Q 047474 172 DELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDI-KRKNKPIILSHHMLPGLQQGQEKMSKSDP 246 (326)
Q Consensus 172 ~~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~-~~~~~p~~l~~~~lp~L~~g~~KMSKS~~ 246 (326)
+++++++|+||+|||||++++ +|++||||.|||+|++++||+++|+ |.. +|+.+++|+||++ +| +|||||.
T Consensus 161 ~~is~~ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~-~~~~l~~pll~~l-dG-~KMSKS~- 236 (420)
T 1jil_A 161 HGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQT-DAYGLTIPLVTKS-DG-KKFGKSE- 236 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCC-CCEEEEECCCBCT-TS-CBTTBCS-
T ss_pred CCcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCC-CeeEeecccccCC-cc-ccccCCC-
Confidence 678999999999999999999 9999999999999999999999999 864 6889999999999 88 6999998
Q ss_pred CCceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccC
Q 047474 247 SSAIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP 288 (326)
Q Consensus 247 ~s~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp 288 (326)
+|+|||+| +|+++++||+++ .++.|..|++++.|.
T Consensus 237 ~naI~L~d~~tsp~~i~~ki~~~-------~D~~v~~~l~~~t~~ 274 (420)
T 1jil_A 237 SGAVWLDAEKTSPYEFYQFWINQ-------SDEDVIKFLKYFTFL 274 (420)
T ss_dssp SSBCBSSTTTSCHHHHHHHHHTC-------CHHHHHHHHHHHCCC
T ss_pred CCeEecCCCCCCHHHHHHHHhcC-------CchhHHHHHHHHHcC
Confidence 57999999 999999999984 568899999997764
No 24
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=5.6e-58 Score=449.00 Aligned_cols=248 Identities=16% Similarity=0.221 Sum_probs=218.2
Q ss_pred HHHHhhccc-ccCHHHHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCC-
Q 047474 25 RLVRSIGEE-CIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGG- 101 (326)
Q Consensus 25 ~li~r~~~e-~~~~~eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~- 101 (326)
+|++|++.+ +..+++|+++|+. +++++|+||+||| ++||||+++ ..++++||++||+++++|||+||+++||+|+
T Consensus 6 ~L~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~ 83 (419)
T 2ts1_A 6 ELQWRGLVNQTTDEDGLRKLLNE-ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKK 83 (419)
T ss_dssp HHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCS
T ss_pred HHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCcc
Confidence 688899887 7778999999974 3668999999999 599999874 4589999999999999999999999999764
Q ss_pred ------CHHHHHHHHHHHHHH---HHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccC
Q 047474 102 ------DLKKIQTVGRYLIEI---WIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQD 172 (326)
Q Consensus 102 ------~~~~i~~~~~~~~~~---~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~ 172 (326)
+++++++|++++.++ ++++|+||+++.|++||+|+..+.. +| ++.++++++++++|+++.+++.|. ++
T Consensus 84 ~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~-~~-~l~~~~~~~tv~rm~~~~~~k~r~-~~ 160 (419)
T 2ts1_A 84 SERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDV-IT-FLRDVGKHFSVNYMMAKESVQSRI-ET 160 (419)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCH-HH-HHHHTGGGCCHHHHHTSHHHHTTT-TT
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchH-HH-HHHHHhcccCHHHHhccchhhhcc-CC
Confidence 789999999877554 5688999999999999998855542 33 366799999999999999999887 46
Q ss_pred ccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHh-cCcCCcceeecCcccCCCCCCccccCCCCC
Q 047474 173 ELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDI-KRKNKPIILSHHMLPGLQQGQEKMSKSDPS 247 (326)
Q Consensus 173 ~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~-~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~ 247 (326)
++++++|+||+|||||++++ +|++||||.|||+|++++||+++|+ |.. +|+.+++|+||++ +| +|||||. +
T Consensus 161 ~is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~-~~~~lt~pll~~l-dG-~KMSKS~-~ 236 (419)
T 2ts1_A 161 GISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEA-RAFGLTIPLVTKA-DG-TKFGKTE-S 236 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC---CCEEEEECCCCCT-TS-CCTTCCS-S
T ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCC-CeeecccccccCC-Cc-ccccCCC-C
Confidence 78999999999999999999 9999999999999999999999999 864 6889999999999 88 6999998 5
Q ss_pred CceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhccC
Q 047474 248 SAIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP 288 (326)
Q Consensus 248 s~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~ifp 288 (326)
|+|||+| +|+++++||+++ .++.|..|++++.|.
T Consensus 237 naI~L~d~~tsp~~i~qki~~~-------~D~~v~~~l~l~t~~ 273 (419)
T 2ts1_A 237 GTIWLDKEKTSPYEFYQFWINT-------DDRDVIRYLKYFTFL 273 (419)
T ss_dssp CCCBSSTTTSCHHHHHHHHHTC-------CHHHHHHHHHHHCCC
T ss_pred CeEecCCCCCCHHHHHHHHhcC-------CchhHHHHHHHHHcC
Confidence 8999999 999999999984 568899999997764
No 25
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=1.4e-58 Score=444.75 Aligned_cols=228 Identities=21% Similarity=0.317 Sum_probs=200.3
Q ss_pred CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 047474 49 QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE 128 (326)
Q Consensus 49 ~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~ 128 (326)
++++|+|++|||+|||||++..+.+|.+||+ ||+++++||||||++++ .+++++++++++++++|+|+|+||++++
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~---~d~~~i~~~~~~~~~~~lA~Gldp~k~~ 79 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVD---FQPQALKQNNFDLVRTLLAVGLDPQKAC 79 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCC---CCHHHHHHHHHHHHHHHHHhCCChhHeE
Confidence 5789999999999999997755457889999 89999999999999986 6899999999999999999999999999
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccc--------cCccchhhhhhhhhhhhhhccccCcEEEec
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE--------QDELTAAQILYPCMQCADIFFLKADICQLG 200 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~--------~~~~~~~~~~YP~lQaaD~~~l~~d~~~~G 200 (326)
||+||+| +++.+++|.+.+ .++++++.|+.+++++.. .+++++|+|+||+|||||++++++|+||||
T Consensus 80 if~qS~~-~~~~el~w~l~~----~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG 154 (348)
T 2yy5_A 80 LFLQSDL-LEHSMMGYLMMV----QSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVG 154 (348)
T ss_dssp EEEGGGC-HHHHHHHHHHHH----HSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECC
T ss_pred EEECCcc-cchhHHHHHHHh----hccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEec
Confidence 9999995 579999999986 689999999888877652 346899999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCc-----CCcceee---cCcccCCCCCCccccCCCCCC--ceecCCCHHHHHHHHHhccCCC
Q 047474 201 MDQRKVNVLAREYCDDIKRK-----NKPIILS---HHMLPGLQQGQEKMSKSDPSS--AIYMEDEEAEVNVKIKKAYCPP 270 (326)
Q Consensus 201 ~DQ~~~~~lar~~~~k~~~~-----~~p~~l~---~~~lp~L~~g~~KMSKS~~~s--~I~L~D~~~~i~~KI~kA~c~~ 270 (326)
.||++|++++||+++++|+. ..|..+. +|+||||++|++|||||.+++ +|||+|+|++|++||++|+|+|
T Consensus 155 ~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~td~ 234 (348)
T 2yy5_A 155 NDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTDS 234 (348)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCCCCS
T ss_pred ccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCCCCC
Confidence 99999999999999999842 2466665 599999965557999999753 8999999999999999999998
Q ss_pred C---------CCCCCcHHHHHHHh
Q 047474 271 K---------IVEGNPCLEYIKYI 285 (326)
Q Consensus 271 ~---------~~~~n~vl~~~~~~ 285 (326)
. +|+.++++.|++++
T Consensus 235 ~~~~~~~~~~~p~v~~~~~~~~~~ 258 (348)
T 2yy5_A 235 FNKIRFASKTQPGVTNMLTILKAL 258 (348)
T ss_dssp SCCCSCCTTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCchhhHHHHHHhC
Confidence 4 35556788888885
No 26
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.4e-58 Score=447.46 Aligned_cols=246 Identities=23% Similarity=0.310 Sum_probs=216.1
Q ss_pred HHHHhhcccccCHHHHHHHHhc--CCCC-eEEEcccCCC-CccchhhhhHHHHHHHHHHC-CCeEEEEEecceeeecCCC
Q 047474 25 RLVRSIGEECIQEDELLNLLTK--KPQP-ICYDGFEPSG-RMHIAQGVMKAISVNKLTSA-GCKVKIWVADWFAQLNNKM 99 (326)
Q Consensus 25 ~li~r~~~e~~~~~eL~~lL~~--~~~~-~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~a-G~~v~ilIaD~~a~~~~~~ 99 (326)
.+++||+ ++++++++++|+. +++| ++|+|++||| ++||||+++.. +++|||++ |+.++|+|||+||+++++
T Consensus 76 ~~~~RG~--i~~~~d~~~ll~~~~~~~p~~vy~G~~PTg~~lHLGh~v~~~-~~~~lQ~~~g~~~~i~IaD~~a~l~~~- 151 (406)
T 3tze_A 76 YFFRRGI--VFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFL-LCKYMQDAFKIRLVIQITDDEKFLWKS- 151 (406)
T ss_dssp HHHHTTS--EEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHSS-
T ss_pred HHHhCCC--eeccccHHHHHHHHhcCCCeEEEEeeCCCCCcccHHHHHHHH-HHHHHHHhcCCcEEEEeeChHHHcCCC-
Confidence 6778888 7778877777653 3344 6999999999 99999987553 57889998 999999999999998875
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhh
Q 047474 100 GGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQI 179 (326)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~ 179 (326)
.+++++++++++++++|+|+|+||+|+.|+.||+|. + .||..+.+++|.+|++++++.. ++. +++++|+|
T Consensus 152 -~~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qs~~~-~---~~~~~~~~L~r~~t~~~~~~~~---g~~--~~~s~g~f 221 (406)
T 3tze_A 152 -MRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEAS-H---HFEENILKISKTINLNEAIKVF---GFD--MSSNIGQV 221 (406)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHG-G---GGHHHHHHHHHTCBHHHHHHHH---CCC--TTSBHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCCccceEEEeccHhH-H---HHHHHHHHHHhhCCHHHHHHhh---CCC--CCCcchhh
Confidence 799999999999999999999999999999999965 3 6899999999999999998854 332 45799999
Q ss_pred hhhhhhhhhhc--------cccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCC-ccccCCCCCCce
Q 047474 180 LYPCMQCADIF--------FLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ-EKMSKSDPSSAI 250 (326)
Q Consensus 180 ~YP~lQaaD~~--------~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~-~KMSKS~~~s~I 250 (326)
+||+|||||++ .+++++||||.|||+|++++||+++|+|. ++|+++++|+|||| +|. +|||||.|+|+|
T Consensus 222 ~YPlLQaaD~~~~~~p~il~~~a~lvpvG~DQ~~~i~l~Rdla~r~~~-~~p~~l~~~~l~gL-dG~~~KMSKS~~~~~I 299 (406)
T 3tze_A 222 GFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGE-KKPSSIYVSLLPDL-KGVNRKMSASDPNSSI 299 (406)
T ss_dssp HHHHHHHGGGSGGGSTTSCTTCEEEEEEEGGGHHHHHHHHHHHHHHTC-CCCEEEEECCCCCT-TSCCCCSSCSCGGGSC
T ss_pred hhHHHhhhhhhccchHHhccCCCeEEeeccchHHHHHHHHHHHHHcCC-CCceeeccCcccCC-CCCCcCCCCCCCCCcc
Confidence 99999999976 23689999999999999999999999996 47999999999999 665 699999988999
Q ss_pred ecCCCHHHHHHHHHh-ccCC-----------CCCCCCCcHHHHHHHhc
Q 047474 251 YMEDEEAEVNVKIKK-AYCP-----------PKIVEGNPCLEYIKYII 286 (326)
Q Consensus 251 ~L~D~~~~i~~KI~k-A~c~-----------~~~~~~n~vl~~~~~~i 286 (326)
||+|+|++|++||++ |+|| +++|+.|++++|++++.
T Consensus 300 ~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~ 347 (406)
T 3tze_A 300 YLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFL 347 (406)
T ss_dssp BTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHc
Confidence 999999999999999 9998 46788889999999975
No 27
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.9e-57 Score=441.98 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=202.1
Q ss_pred HHHHhhcccccCHH---HHHHHHhcCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHC-CCeEEEEEecceeeecCCC
Q 047474 25 RLVRSIGEECIQED---ELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSA-GCKVKIWVADWFAQLNNKM 99 (326)
Q Consensus 25 ~li~r~~~e~~~~~---eL~~lL~~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~a-G~~v~ilIaD~~a~~~~~~ 99 (326)
.+++||+ ++.++ +|.+++++++.+++|+||+||| +|||||+++.+ ++++||++ |++++|+|||+|+++.++
T Consensus 49 ~l~~RG~--i~~~~d~~~l~~~l~~g~~~~vy~G~~PTa~~lHlGh~v~~~-~~~~lQ~~~~~~v~i~I~D~~~~~~r~- 124 (393)
T 3hv0_A 49 HFFRRNI--FLSHRDFEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFL-FTKYLQDTFKVPLVIQLTDDEKFIFKS- 124 (393)
T ss_dssp HHHHTTS--EEEEESHHHHHHHHHTTCCCEEEEEECCSSSSCBSTTHHHHH-HHHHHHHHHCCCEEEEECHHHHHHHCT-
T ss_pred HHHhCCC--ccccCCHHHHHHHHhcCCCeEEEeCCCCCCCCccHHHHHHHH-HHHHHHHhcCCCeEeeccChHHHhhcc-
Confidence 6788997 54444 4455555444567999999995 99999976553 68889998 889999999999988774
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhh
Q 047474 100 GGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQI 179 (326)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~ 179 (326)
..+++++++++++++++|+|+|+||+++.|++||+|. ..||..+.++++++|++++++.. ++ .+++++|+|
T Consensus 125 ~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~----~~~~~~~~~l~r~~t~~~~~~~~---~~--~~~~s~g~f 195 (393)
T 3hv0_A 125 NLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI----AELYPDILRIEKKISCSQIKSIF---GF--KDSCNVGKF 195 (393)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHH----HHHHHHHHHHHHHSBHHHHHHHH---CC--CTTSBHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHH----HHHHHHHHHHHccCCHHHHHHhh---CC--CCCCchhhH
Confidence 4799999999999999999999999999999999976 24688888999999999999864 33 256799999
Q ss_pred hhhhhhhhhhcc------c--c---CcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCC-ccccCCCCC
Q 047474 180 LYPCMQCADIFF------L--K---ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ-EKMSKSDPS 247 (326)
Q Consensus 180 ~YP~lQaaD~~~------l--~---~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~-~KMSKS~~~ 247 (326)
+||+|||||+++ + + +++||||.|||+|++++||+++|+|.. +|+++++|+|||| +|. +|||||.++
T Consensus 196 ~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~-~p~~l~~~~l~gL-dG~~~KMSKS~~n 273 (393)
T 3hv0_A 196 AFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYL-KPSSIHSIFLPSL-QGSQTKMSASVQN 273 (393)
T ss_dssp HHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCC-CCEEEEECCCCC--------------C
T ss_pred hHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCC-CceeeccCcccCC-CCCCcCCCCCCCC
Confidence 999999999974 1 3 268899999999999999999999964 7999999999999 554 699999987
Q ss_pred CceecCCCHHHHHHHHHh-ccCC-----------CCCCCCCcHHHHHHHhc
Q 047474 248 SAIYMEDEEAEVNVKIKK-AYCP-----------PKIVEGNPCLEYIKYII 286 (326)
Q Consensus 248 s~I~L~D~~~~i~~KI~k-A~c~-----------~~~~~~n~vl~~~~~~i 286 (326)
|+|||+|+|++|++||++ |||+ |++|+.|++++|++++.
T Consensus 274 saI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~ 324 (393)
T 3hv0_A 274 SSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLM 324 (393)
T ss_dssp CCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHC
T ss_pred CeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHc
Confidence 899999999999999999 9998 57788899999999964
No 28
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=2.5e-58 Score=443.94 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=207.6
Q ss_pred HHHHHhhcccccCHH-----HHHHHHhcCC--C-CeEEEcccCCC-CccchhhhhHHHHHHHHHHCCCeEEEEEecceee
Q 047474 24 FRLVRSIGEECIQED-----ELLNLLTKKP--Q-PICYDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQ 94 (326)
Q Consensus 24 ~~li~r~~~e~~~~~-----eL~~lL~~~~--~-~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~ 94 (326)
-++++|++.|+++++ +|+++|++++ + +++|+||+||| +|||||++ ...++++||++||+++++|||+||+
T Consensus 13 ~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal 91 (356)
T 2pid_A 13 AAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATAR 91 (356)
T ss_dssp HHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGG
T ss_pred HHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceee
Confidence 578899998877776 8999997642 3 57999999999 59999955 4457999999999999999999999
Q ss_pred ecCCCCC-------CHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEeCChhHHhhhhhhHHHHHHhhhccCH
Q 047474 95 LNNKMGG-------DLKKIQTVGRYLIEIWIAVGMRTER-----------VEFLWSSEEINARADEYWPLVMDIARRNKL 156 (326)
Q Consensus 95 ~~~~~~~-------~~~~i~~~~~~~~~~~~A~G~d~~k-----------~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl 156 (326)
++||+|+ +++++++++++++++|+|+ +||++ ++|++||+|+..+ .||.++.++++++++
T Consensus 92 ~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~--~~~~~l~~~~~~~~v 168 (356)
T 2pid_A 92 LGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQ--HLVDFLAAVGGHFRM 168 (356)
T ss_dssp TCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTC--BHHHHHHHHGGGSBH
T ss_pred ecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhc--cHHHHHHHHhcceeH
Confidence 9999876 5999999999999999999 88754 9999999998543 378888899999999
Q ss_pred HHHHhhhhhhccccc-Cccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcc
Q 047474 157 PRIMRCCQIMGRSEQ-DELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHML 231 (326)
Q Consensus 157 ~~~~~~~~~~~r~~~-~~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~l 231 (326)
++|+++.++++|.+. +++++|+|+||+||||||+++ +||+||||.|||+|++++||+++|+|.. +|+.++.|+|
T Consensus 169 ~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~-~~~~l~~pll 247 (356)
T 2pid_A 169 GTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGE-DVFGITVPLI 247 (356)
T ss_dssp HHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSC-CCEEEEECCC
T ss_pred HHHhcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCC-Cccccccccc
Confidence 999999999998753 468999999999999999999 9999999999999999999999999974 6888999999
Q ss_pred cCCCCCCccccCCCCCCceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhcc
Q 047474 232 PGLQQGQEKMSKSDPSSAIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF 287 (326)
Q Consensus 232 p~L~~g~~KMSKS~~~s~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~if 287 (326)
|++ +| +|||||. +|+|||+| +|++|++||+++ .+++|..|++++.|
T Consensus 248 ~~l-dG-~KMSKS~-~naI~L~d~~tsp~~i~~ki~~~-------~D~~v~~~l~~~t~ 296 (356)
T 2pid_A 248 TST-TG-AKLGKSA-GNAVWLNRDKTSPFELYQFFVRQ-------PDDSVERYLKLFTF 296 (356)
T ss_dssp C----------------CCBSSTTTSCHHHHHHHHHTC-------CHHHHHHHHHHHCC
T ss_pred cCC-Cc-ccccCCC-CCeeeccCCCCCHHHHHHHHHcC-------CchhHHHHHHHHHc
Confidence 999 78 6999996 68999999 999999999985 45789999998654
No 29
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=3e-57 Score=445.64 Aligned_cols=252 Identities=20% Similarity=0.244 Sum_probs=210.9
Q ss_pred HHHHHhhccccc-CHHHHHHHHhcCCCCeEEEcccCC-CCccchhhhhHHHHHHHHHH-CCCeEEEEEecceeeecCCCC
Q 047474 24 FRLVRSIGEECI-QEDELLNLLTKKPQPICYDGFEPS-GRMHIAQGVMKAISVNKLTS-AGCKVKIWVADWFAQLNNKMG 100 (326)
Q Consensus 24 ~~li~r~~~e~~-~~~eL~~lL~~~~~~~iy~G~~PT-G~lHLG~~~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~~~ 100 (326)
..+++||+.... ..++|.++|++++.+++|+||+|| |+|||||+++.+ ++++||+ +||+++++|||+||++++++
T Consensus 76 ~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~dPTag~LHLGh~v~~~-~l~~lQ~~~g~~~i~lI~D~ta~l~~~~- 153 (432)
T 2ip1_A 76 HHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFV-FTKWLQEVFDVPLVIELTDDEKFLFKHK- 153 (432)
T ss_dssp CHHHHTTSEEEEESHHHHHHHHHHTCCCEEEEEECCCSSCCBGGGHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHCTT-
T ss_pred HHHHhCCCcccCCCHHHHHHHHhcCCCeEEEEeecCCCCCccHHHHHHHH-HHHHHHHHcCCeEEEEEecccceeCCCC-
Confidence 367789975544 467788888765566799999999 699999987654 5788998 99999999999999999863
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhh
Q 047474 101 GDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL 180 (326)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~ 180 (326)
.+++.++++++++++.|+|+|+||+++.||+||+|.. ..||.++..|++.++.+++++.. ++ .+++++|+|+
T Consensus 154 ~t~e~i~~~~~~~~~~~lA~GlDp~k~~i~~nSd~~~---~~~~~~~~~v~rm~~~~~~k~r~---~~--~~~~s~g~f~ 225 (432)
T 2ip1_A 154 LTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMG---GAFYETVVRVSRQITGSTAKAVF---GF--NDSDCIGKFH 225 (432)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHCS---HHHHHHHHHHHTSCCHHHHHHTT---CC--CTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCchhhh---hhHHHHHHHHHhhhcHHHHHHHh---CC--CCCCchhhhh
Confidence 6899999999999999999999999999999999752 46888888888899988887642 22 2457999999
Q ss_pred hhhhhhhhhcc-----------ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCc
Q 047474 181 YPCMQCADIFF-----------LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSA 249 (326)
Q Consensus 181 YP~lQaaD~~~-----------l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~ 249 (326)
||+|||||+++ +++++||||.|||+|++++|++++|+|+ ++|.++++|+||+|+++++|||||.++++
T Consensus 226 YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~-~~p~~l~~~ll~gLdG~~~KMSKS~~nsa 304 (432)
T 2ip1_A 226 FASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKY-SKPALLHSRFFPALQGSTTKMSASDDTTA 304 (432)
T ss_dssp THHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTS-CCCEEEEECCCCCTTC--------CGGGC
T ss_pred HHHHHHHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhCC-CCceeeccccccCCCCCccccCCCCCCCe
Confidence 99999999999 4688999999999999999999999995 47888999999999433369999997669
Q ss_pred eecCCCHHHHHHHHHh-ccCCC-----------CCCCCCcHHHHHHHhc
Q 047474 250 IYMEDEEAEVNVKIKK-AYCPP-----------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 250 I~L~D~~~~i~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~i 286 (326)
|||+|+|++|++||++ |||++ ++|+.++++.|++++.
T Consensus 305 I~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~ 353 (432)
T 2ip1_A 305 IFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFK 353 (432)
T ss_dssp CBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHC
T ss_pred EeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHC
Confidence 9999999999999999 99986 6778889999999863
No 30
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=3.1e-57 Score=439.24 Aligned_cols=246 Identities=13% Similarity=0.190 Sum_probs=214.0
Q ss_pred HHHHhhcccccCHHHHHHHH---hcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHC-CCeEEEEEecceeeecCCCC
Q 047474 25 RLVRSIGEECIQEDELLNLL---TKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSA-GCKVKIWVADWFAQLNNKMG 100 (326)
Q Consensus 25 ~li~r~~~e~~~~~eL~~lL---~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~a-G~~v~ilIaD~~a~~~~~~~ 100 (326)
.+++||+ ++.+++++.++ ++++..++|+||+|||.+||||+++.+ +++|||++ |+.++|+|+|+||++.++
T Consensus 57 ~~l~RG~--i~~~~d~~~ll~~~~~~~~~~vysG~~PTG~lHLGh~v~~~-~~~~lQ~~~g~~v~i~I~D~~a~~~r~-- 131 (386)
T 3hzr_A 57 HYLSRGV--FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKEVALEEYITLE-FARYLQDAFNIQVIIQILDDIKVLNRE-- 131 (386)
T ss_dssp HHHHTTS--EEEESSHHHHHHHHHTTCCEEEEEEECCCSSCBGGGHHHHH-HHHHHHHHHCCEEEEEECHHHHHHTTS--
T ss_pred HHHHCcC--ccccccHHHHHHHHhcCCCeEEEeccCCCCCccHHHHHHHH-HHHHHHHhcCCeEEEEeCchHHhhcCC--
Confidence 6778887 66666655554 334445699999999999999987653 57789995 999999999999999875
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhh
Q 047474 101 GDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL 180 (326)
Q Consensus 101 ~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~ 180 (326)
.++++++++++++++.|+|+|+||+|+.|++||+|. + .||..+.+++|.++++++++. .++ .+++++|+|+
T Consensus 132 ~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~-~---~~~~~~~~l~r~~t~~~~~~~---~~~--~~~~~~g~f~ 202 (386)
T 3hzr_A 132 ATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYF-G---KMYRTISLVEKATAYNVVQPF---FNF--EYSDNIGKLA 202 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHH-H---HHHHHHHHHHHHCBHHHHTTT---SCC--CSSSBHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHH-H---HHHHHHHHHHhhccHHHHHHH---hCC--CCCCchhhHh
Confidence 799999999999999999999999999999999976 3 689999999999999999773 233 2457999999
Q ss_pred hhhhhhhhhcc--------cc-CcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCcee
Q 047474 181 YPCMQCADIFF--------LK-ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIY 251 (326)
Q Consensus 181 YP~lQaaD~~~--------l~-~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~ 251 (326)
||+|||||+++ ++ ++++|+|.||++|++++||+|+|+|+. +|+++++|+|||| +|.+|||||+++|+||
T Consensus 203 YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~~-~p~~l~~~~l~gL-dG~~KMSKSd~~~~I~ 280 (386)
T 3hzr_A 203 SPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFI-QPTVLFHKMVPLL-SGVTKFDIPSDHNSIL 280 (386)
T ss_dssp HHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCC-CCEEEEECCCCCT-TCTTCCCCCCTTTSCB
T ss_pred hHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHHHHHHcCCC-CceEeecCeeeCC-CCCCccCcCCCCCeee
Confidence 99999998884 34 789999999999999999999999974 7898999999999 6656999998899999
Q ss_pred cCCCHHHHHHHHHh-ccCCC-----------CCCCCCcHHHHHHHhc
Q 047474 252 MEDEEAEVNVKIKK-AYCPP-----------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 252 L~D~~~~i~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~i 286 (326)
|+|+|++|++||++ |||++ ++|+.|++++|++++.
T Consensus 281 L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~ 327 (386)
T 3hzr_A 281 LSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFS 327 (386)
T ss_dssp TTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHc
Confidence 99999999999999 99985 4678899999999976
No 31
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=3.2e-57 Score=438.52 Aligned_cols=247 Identities=24% Similarity=0.340 Sum_probs=214.3
Q ss_pred HHHhhcccccCHHHHHHHHhc--CCCC-eEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCC
Q 047474 26 LVRSIGEECIQEDELLNLLTK--KPQP-ICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGD 102 (326)
Q Consensus 26 li~r~~~e~~~~~eL~~lL~~--~~~~-~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~ 102 (326)
+++|+. +++|++|+.+|+. +++| ++|+|++|||.+||||++.. .+++++|++|++++|+||||||+++++ ..+
T Consensus 46 ~lrRgi--~f~hRd~d~il~~~e~gk~~~v~sG~~PTG~lHLGhyv~~-~~~~~lq~~~~~~~~~IaD~ha~t~~~-~~~ 121 (372)
T 3a04_A 46 LMRRGI--IFGHRDFDKILEAKARGERVAVLTGFMPSGKFHFGHKLTV-DQLIYLQKNGFKVFVAIADAEAFAVRR-IGR 121 (372)
T ss_dssp HHHTTS--EEEEESHHHHHHHHHTTCCCEEEEEECCCSCCBHHHHHHH-HHHHHHHHTTCEEEEEECHHHHHHTTC-CCH
T ss_pred hhccce--eeeccCHHHHHHHHHcCCCCEEEeCcCCCcHhHHHHHHHH-HHHHHHHhCCCeEEEEEecchhhccCC-CCC
Confidence 688998 8999999999974 4444 69999999999999998754 479999999999999999999999864 346
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhhhhh
Q 047474 103 LKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYP 182 (326)
Q Consensus 103 ~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~~YP 182 (326)
++.++.++++++++|+|||+||+|++|++||++... +|.++..+++.++++++.+..+ ..+.|.++||
T Consensus 122 ~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~~~~----~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~yP 189 (372)
T 3a04_A 122 EEAVRIAVEEYIANMIALGLDPKDTEFYFQTNRGTP----YFRLIQLFSGKVTAAEMEAIYG--------ELTPAKMMAS 189 (372)
T ss_dssp HHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGSCHH----HHHHHHHHTTSSCHHHHHHHHS--------SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHcchhhhccchHH----HHHHHHHHHhhhhHHHHhhhhh--------ccCcccccCC
Confidence 778999999999999999999999999999996533 4566667788999999987531 2478999999
Q ss_pred hhhhhhhccccCc--------EEEeccchhHHHHHHHHHHHHhcCc---CCcceeecCcccCCCCCCccccCCCCCCcee
Q 047474 183 CMQCADIFFLKAD--------ICQLGMDQRKVNVLAREYCDDIKRK---NKPIILSHHMLPGLQQGQEKMSKSDPSSAIY 251 (326)
Q Consensus 183 ~lQaaD~~~l~~d--------~~~~G~DQ~~~~~lar~~~~k~~~~---~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~ 251 (326)
+||||||+++++| +||+|.||++|++++||+|+|+|.. ++|..++++++||| +| .|||||.++|+|+
T Consensus 190 ~lqAaDil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgl-dG-~KmS~S~~ns~I~ 267 (372)
T 3a04_A 190 LTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGL-DG-RKMSSSRPDSTIF 267 (372)
T ss_dssp HHHHHHHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCT-TS-SBCCTTSGGGSCB
T ss_pred cchhHHHhhhcCccccCccceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCC-CC-CccCCCCCCcccc
Confidence 9999999996655 9999999999999999999999953 36888999999999 77 6999999999999
Q ss_pred cCCCHHHHHHHHHhccCCC-----------CCCCCCcHHHHHHHhccCCC
Q 047474 252 MEDEEAEVNVKIKKAYCPP-----------KIVEGNPCLEYIKYIIFPWD 290 (326)
Q Consensus 252 L~D~~~~i~~KI~kA~c~~-----------~~~~~n~vl~~~~~~ifp~~ 290 (326)
|+|+|++|++||++|+|++ |+|+.++++++..|++++..
T Consensus 268 l~D~p~~i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~ 317 (372)
T 3a04_A 268 LTDPPEVARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDD 317 (372)
T ss_dssp TTCCHHHHHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSH
T ss_pred cCCCHHHHHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCH
Confidence 9999999999999999994 67888899998778766643
No 32
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=7.9e-57 Score=442.32 Aligned_cols=250 Identities=22% Similarity=0.294 Sum_probs=214.9
Q ss_pred HHHHhhcccccCHHH---HHHHHhcCCCCeEEEcccCC-CCccchhhhhHHHHHHHHHHC-CCeEEEEEecceeeecCCC
Q 047474 25 RLVRSIGEECIQEDE---LLNLLTKKPQPICYDGFEPS-GRMHIAQGVMKAISVNKLTSA-GCKVKIWVADWFAQLNNKM 99 (326)
Q Consensus 25 ~li~r~~~e~~~~~e---L~~lL~~~~~~~iy~G~~PT-G~lHLG~~~~~~~~~~~lq~a-G~~v~ilIaD~~a~~~~~~ 99 (326)
.+++||+ ++.+++ |.+.+++++..++|+||+|| |+|||||+++.+ +++|||++ |+.++|+|||+||++.++
T Consensus 66 ~~l~RG~--i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v~~~-~l~~lQ~~~g~~v~I~IgD~~a~~~r~- 141 (451)
T 3foc_A 66 PMLRRGL--FYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFI-FTKYLQDAFKCYVVIQITDDEKFLRNR- 141 (451)
T ss_dssp HHHHTTS--EEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHHHH-HHHHHHHHHTCEEEEEECHHHHHHHCT-
T ss_pred HHHhCCC--ccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHHHHH-HHHHHHHccCceEEEEeeCcHHhhccc-
Confidence 6788887 444444 44445544344699999999 699999976543 58889998 899999999999999774
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhh
Q 047474 100 GGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQI 179 (326)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~ 179 (326)
..+++++++++++++++|+|+|+||+++.|++||+|.. ...||.++.++++++|+++|+++.++ .+++++|+|
T Consensus 142 ~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~--~~~~~~~l~~L~r~~Tv~~m~~~~~f-----~~~is~gef 214 (451)
T 3foc_A 142 SLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLS--LKNRYRFSCLVDRMLPISQLRASFGF-----SNDANVGYA 214 (451)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTT--STTHHHHHHHHHHTCCHHHHHHHHCC-----CSSSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhc--chhHHHHHHHHHhhCCHHHHHhhccc-----CCCCchHHH
Confidence 47999999999999999999999999999999999863 34699999999999999999997643 245799999
Q ss_pred hhhhhhhhhhccccC------------------------------------------c-----------------EEEec
Q 047474 180 LYPCMQCADIFFLKA------------------------------------------D-----------------ICQLG 200 (326)
Q Consensus 180 ~YP~lQaaD~~~l~~------------------------------------------d-----------------~~~~G 200 (326)
+||+|||||++++.+ | ++|||
T Consensus 215 ~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG 294 (451)
T 3foc_A 215 AFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASG 294 (451)
T ss_dssp TCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEEC
T ss_pred hhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeee
Confidence 999999999996554 2 89999
Q ss_pred cchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCCCHHHHHHHHHh-ccCC----------
Q 047474 201 MDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK-AYCP---------- 269 (326)
Q Consensus 201 ~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D~~~~i~~KI~k-A~c~---------- 269 (326)
.||++|++++|++++++|+ ++|+++++|+||||+++++|||||.++|+|+|+|+|++|++|||+ |+|+
T Consensus 295 ~DQ~~hlel~Rdia~rfn~-~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~ 373 (451)
T 3foc_A 295 IEQDPYFRLARDLAPRMGH-PKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRA 373 (451)
T ss_dssp TTTHHHHHHHHHHTTTTTS-CCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHT
T ss_pred cchHHHHHHHHHHHHHhCC-CCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHHHHHHHhhhccCCCCccchhccc
Confidence 9999999999999999996 478999999999995444699999987899999999999999999 9998
Q ss_pred -CCCCCCCcHHHHHHHhc
Q 047474 270 -PKIVEGNPCLEYIKYII 286 (326)
Q Consensus 270 -~~~~~~n~vl~~~~~~i 286 (326)
+++|+.|+++.|++++.
T Consensus 374 ~~g~p~~~~v~~~l~~f~ 391 (451)
T 3foc_A 374 FGADLSVDVSVRYLEVFM 391 (451)
T ss_dssp TCCCTTTCHHHHHHHHHC
T ss_pred CCCCcchhhHHHHHHHHc
Confidence 46788999999999964
No 33
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=3.3e-57 Score=440.55 Aligned_cols=245 Identities=22% Similarity=0.271 Sum_probs=196.0
Q ss_pred HHHHhhcccccCHHHHHHHHh---cCCCCeEEEcccCCC-CccchhhhhHHHHHHHHHHC-CCeEEEEEecceeeecCCC
Q 047474 25 RLVRSIGEECIQEDELLNLLT---KKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLTSA-GCKVKIWVADWFAQLNNKM 99 (326)
Q Consensus 25 ~li~r~~~e~~~~~eL~~lL~---~~~~~~iy~G~~PTG-~lHLG~~~~~~~~~~~lq~a-G~~v~ilIaD~~a~~~~~~ 99 (326)
.+++||+. +.+++++++|+ +++.+++|+|++||| +|||||+++.+ +++|||++ |+.++|+|||+|++++++
T Consensus 53 ~~~~RG~~--~~~~d~~~~l~~~~~~~~~~vy~G~~PTg~~lHLGh~v~~~-~~~~lQ~~~~~~v~i~I~D~~~~l~~~- 128 (395)
T 3i05_A 53 HFLRRGIF--FSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFM-FTKWLQDSFRVPLVIQMTDDEKFYFRN- 128 (395)
T ss_dssp HHHHTTSE--EEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGSHHHH-HHHHHHHHHTCCEEEEECHHHHHHHSC-
T ss_pred HHHhcCCc--cccccHHHHHHHHhcCCCeEEEEeecCCCccchHHHHHHHH-HHHHHHHhcCCcEEEEEcchHHHhcCC-
Confidence 57888874 66666666664 344456999999999 89999987553 57889997 899999999999999886
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhh
Q 047474 100 GGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQI 179 (326)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~ 179 (326)
.+++++++++++++++|+|+|+||+++.|+.||+|. . .||..+.++++++|++++++.. ++. +++++|+|
T Consensus 129 -~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~-~---~~~~~v~~l~r~~t~~~~~~~~---~~~--~~~s~g~f 198 (395)
T 3i05_A 129 -IPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-G---CMYRTVAKIERAFTASQVRGCF---GFA--MEDNCGRW 198 (395)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHT-T---TSHHHHHHHHHHSBHHHHHHHH---CCC--TTSBHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHH-H---HHHHHHHHHHhhCCHHHHHHhh---CCC--CCCchHHH
Confidence 799999999999999999999999999999999976 2 6888899999999999999864 332 45799999
Q ss_pred hhhhhhhh--------hhcccc----CcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCC-ccccCCCC
Q 047474 180 LYPCMQCA--------DIFFLK----ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ-EKMSKSDP 246 (326)
Q Consensus 180 ~YP~lQaa--------D~~~l~----~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~-~KMSKS~~ 246 (326)
+||+|||| ||+.++ +|+||||.|||+|++++||+++|+|+. +|+++++|+|||| +|. +||||| +
T Consensus 199 ~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~-~p~~l~~~~l~gL-dG~~~KMSKS-~ 275 (395)
T 3i05_A 199 MFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYL-KPAVIHSKFFPGL-SGPKGKMSSS-S 275 (395)
T ss_dssp HHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCC-CCEEEEECCCCCC-------------
T ss_pred HHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCC-CceeeccccccCC-CCCcccCCCC-C
Confidence 99999999 555677 899999999999999999999999964 7999999999999 554 699999 6
Q ss_pred CCceecCCCHHHHHHHHHh-ccCCC-----------CCCCCCcHHHHHHHhc
Q 047474 247 SSAIYMEDEEAEVNVKIKK-AYCPP-----------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 247 ~s~I~L~D~~~~i~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~i 286 (326)
+|+|||+|+|++|++||++ |||++ ++|+.|++++|++++.
T Consensus 276 ~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~ 327 (395)
T 3i05_A 276 GTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFL 327 (395)
T ss_dssp --CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHC
T ss_pred CCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHc
Confidence 8999999999999999999 99974 4678889999999975
No 34
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=9e-57 Score=441.89 Aligned_cols=250 Identities=20% Similarity=0.263 Sum_probs=214.5
Q ss_pred HHHHHhhcccccCHHHH---HHHHhcCCCCeEEEcccCC-CCccchhhhhHHHHHHHHHH-CCCeEEEEEecceeeecCC
Q 047474 24 FRLVRSIGEECIQEDEL---LNLLTKKPQPICYDGFEPS-GRMHIAQGVMKAISVNKLTS-AGCKVKIWVADWFAQLNNK 98 (326)
Q Consensus 24 ~~li~r~~~e~~~~~eL---~~lL~~~~~~~iy~G~~PT-G~lHLG~~~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~ 98 (326)
..+++||+ ++.++++ .+++++++..++|+||+|| |+|||||+++.+ ++++||+ +||+++|+|||+||+++|
T Consensus 82 ~~l~~RG~--i~~~~d~~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~-~~~~lQ~~~G~~~iilIgD~ta~igd- 157 (437)
T 1r6u_A 82 HHFLRRGI--FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI-FTKWLQDVFNVPLVIQMTDDEKYLWK- 157 (437)
T ss_dssp CHHHHHTS--EEEEESHHHHHHHHTTTCCEEEEEEECCCSSCCBHHHHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHS-
T ss_pred HHHHhCCC--ccCCCCHHHHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHH-HHHHHHHHhCCcEEEEEecceeeecC-
Confidence 36778998 6665555 5555444344699999999 699999987654 5788998 999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhh
Q 047474 99 MGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQ 178 (326)
Q Consensus 99 ~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~ 178 (326)
..++++++++++++++.|+|+|+||+++.|++||+|..+. .+||.++..|++.++.++++++. ++ .+++++|+
T Consensus 158 -~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~nSd~~~~l-~~~~~l~~~v~rm~~~~~~k~r~---~~--~~~~s~ge 230 (437)
T 1r6u_A 158 -DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMS-SGFYKNVVKIQKHVTFNQVKGIF---GF--TDSDCIGK 230 (437)
T ss_dssp -SCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHGGGC-TTHHHHHHHHHHTCBHHHHHHHH---CC--CTTSBHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCCCccceEEEechhhhhhH-HHHHHHHHHHHhhccHHHHHHHh---CC--CCCCchHh
Confidence 3689999999999999999999999999999999986433 47899998888888888887643 22 24679999
Q ss_pred hhhhhhhhhhhcc-----------ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCC-ccccCCCC
Q 047474 179 ILYPCMQCADIFF-----------LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ-EKMSKSDP 246 (326)
Q Consensus 179 ~~YP~lQaaD~~~-----------l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~-~KMSKS~~ 246 (326)
|+||+|||||+++ ++++++|||.|||+|++++|++++|+|. ++|.++++|+||+| +|. +|||||.+
T Consensus 231 f~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~~-~~P~~l~~pll~gL-dG~~~KMSKS~~ 308 (437)
T 1r6u_A 231 ISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY-PKPALLHSTFFPAL-QGAQTKMSASDP 308 (437)
T ss_dssp HHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTC-CCCEEEEECCCEET-TEEEEECCTTSS
T ss_pred HHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHhCC-CCceEeecccccCC-CCCccccCCCCC
Confidence 9999999999999 4568999999999999999999999995 47888999999999 553 69999998
Q ss_pred CCceecCCCHHHHHHHHHh-ccCCC-----------CCCCCCcHHHHHHHhc
Q 047474 247 SSAIYMEDEEAEVNVKIKK-AYCPP-----------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 247 ~s~I~L~D~~~~i~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~i 286 (326)
+++|||+|+|++|++||++ |||++ ++|+.++++.|++++.
T Consensus 309 nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft 360 (437)
T 1r6u_A 309 NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFL 360 (437)
T ss_dssp SSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHC
T ss_pred CCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHc
Confidence 7799999999999999999 99987 6788899999999865
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=5.9e-56 Score=431.86 Aligned_cols=250 Identities=13% Similarity=0.135 Sum_probs=212.5
Q ss_pred HHHHHhhccc-ccC-HHHHHHHHhcCCCCeEEEcccCCCC-ccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCC
Q 047474 24 FRLVRSIGEE-CIQ-EDELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMG 100 (326)
Q Consensus 24 ~~li~r~~~e-~~~-~~eL~~lL~~~~~~~iy~G~~PTG~-lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~ 100 (326)
-+|++|++.+ +++ +++|+++|+. +++++|+||+|||. |||||+++ ..++++||++||+++++|||+||+++||+|
T Consensus 38 ~~L~~Rg~~~~~~~~~e~l~~ll~~-~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsg 115 (392)
T 1y42_X 38 DLFEERGYVKDTAGTKEHIAELMRT-RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTG 115 (392)
T ss_dssp HHHHHHTCCSCEESCHHHHHHHHHH-CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC
T ss_pred HHHHHCCcHHhhcCCHHHHHHHHcC-CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCC
Confidence 3678899887 875 6789999974 36689999999995 99999874 458999999999999999999999999876
Q ss_pred C-------CHHHHHHHHHHHHHHHHHcC-----------CC---CCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHH
Q 047474 101 G-------DLKKIQTVGRYLIEIWIAVG-----------MR---TERVEFLWSSEEINARADEYWPLVMDIARRNKLPRI 159 (326)
Q Consensus 101 ~-------~~~~i~~~~~~~~~~~~A~G-----------~d---~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~ 159 (326)
+ +++++++|++.++++++++| +| |+++.|+.||+|++.+.. ..++.++++++++++|
T Consensus 116 k~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~--l~~l~~ig~~~~v~rm 193 (392)
T 1y42_X 116 RLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPM--LEVLRRVGHALRIGPM 193 (392)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCH--HHHHHHHTTTCCHHHH
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhH--HHHHHHHhccCcHHHH
Confidence 5 35678889988887777654 55 689999999999866653 3345689999999999
Q ss_pred Hhhhhhhcccc-cCccchhhhhhhhhhhhhhccc----cCcEEEeccchhHHHHHHHHHHHHhcCc--------------
Q 047474 160 MRCCQIMGRSE-QDELTAAQILYPCMQCADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRK-------------- 220 (326)
Q Consensus 160 ~~~~~~~~r~~-~~~~~~~~~~YP~lQaaD~~~l----~~d~~~~G~DQ~~~~~lar~~~~k~~~~-------------- 220 (326)
+++.+++.|.+ ++++++|+|+||+||||||+++ +|++||||.|||+|++++||+++|+|+.
T Consensus 194 l~~~~~k~r~~~~~~is~gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l 273 (392)
T 1y42_X 194 LSRDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKT 273 (392)
T ss_dssp HSSHHHHHTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCS
T ss_pred hhhhHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhcccccccccccccc
Confidence 99999999875 4678999999999999999988 6999999999999999999999999752
Q ss_pred --CCcceeecCcccCCCCCCccccCCCCCCceecCC---CHHHHHHHHHhccCCCCCCCCCcHHHHHHHhcc
Q 047474 221 --NKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED---EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF 287 (326)
Q Consensus 221 --~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D---~~~~i~~KI~kA~c~~~~~~~n~vl~~~~~~if 287 (326)
.+|+.+++|+||++ +| +|||||. +|+|||+| +|+++++||+++ .++.|..|++++.|
T Consensus 274 ~~~~~~~l~~pll~~l-dG-~KMSKS~-~naI~L~d~~tsp~~i~qki~~~-------~D~~v~~~l~~ft~ 335 (392)
T 1y42_X 274 ALDECVGFTVPLLTDS-SG-AKFGKSA-GNAIWLDPYQTSVFDFYGYFVRR-------SDQEVENLLKLFTF 335 (392)
T ss_dssp GGGSCEEEECCCCBCT-TC-CBTTBCS-SSBCBSSTTTSCHHHHHHHHHTC-------CTTTHHHHHHHHCC
T ss_pred ccCCccccccccCcCC-ch-hhccCCC-CCeeeccCCCCCHHHHHHHHHcC-------CchhHHHHHHHHHh
Confidence 25788999999999 78 6999997 58999999 999999999985 36889999999653
No 36
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.6e-55 Score=438.17 Aligned_cols=249 Identities=20% Similarity=0.266 Sum_probs=215.1
Q ss_pred HHHHhhcccccCHHHH---HHHHhcCCCCeEEEcccCC-CCccchhhhhHHHHHHHHHH-CCCeEEEEEecceeeecCCC
Q 047474 25 RLVRSIGEECIQEDEL---LNLLTKKPQPICYDGFEPS-GRMHIAQGVMKAISVNKLTS-AGCKVKIWVADWFAQLNNKM 99 (326)
Q Consensus 25 ~li~r~~~e~~~~~eL---~~lL~~~~~~~iy~G~~PT-G~lHLG~~~~~~~~~~~lq~-aG~~v~ilIaD~~a~~~~~~ 99 (326)
.+++||+ ++.++++ .+++++++..++|+||+|| |+|||||+++.+ .+++||+ +||+++|+|||+||+++|
T Consensus 130 ~l~~RG~--i~~~~d~~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~-~~~~lQ~~~g~~~iilI~D~~a~igd-- 204 (477)
T 1r6t_A 130 HFLRRGI--FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFI-FTKWLQDVFNVPLVIQMTDDEKYLWK-- 204 (477)
T ss_dssp HHHHTTS--EEEEESHHHHHHHHHTTCCEEEEEEECCCTTCCBGGGHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHS--
T ss_pred HHHhCCC--ccccCCHHHHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHH-HHHHHHHHhCCcEEEEEecceeeecC--
Confidence 6778887 6655555 4555444345699999999 699999987654 4778998 999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhhccCHHHHHhhhhhhcccccCccchhhh
Q 047474 100 GGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQI 179 (326)
Q Consensus 100 ~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~~~tl~~~~~~~~~~~r~~~~~~~~~~~ 179 (326)
..++++++++++++++.|+|+|+||+++.|++||+|..+. .+||.++.++++.+++++++++. ++ .+++++|+|
T Consensus 205 ~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~nsd~~~~l-~~~~~~~~~l~r~~t~~~~k~r~---~~--~~~~s~gef 278 (477)
T 1r6t_A 205 DLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMS-SGFYKNVVKIQKHVTFNQVKGIF---GF--TDSDCIGKI 278 (477)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEHHHHGGGC-TTHHHHHHHHHHTCBHHHHHHHH---CC--CTTSBHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEechhhhccc-HHHHHHHHHHHhhccHHHHHHHh---CC--CCCCChhhh
Confidence 3689999999999999999999999999999999976322 47899999999999999998753 22 245799999
Q ss_pred hhhhhhhhhhccc-----------cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCC-ccccCCCCC
Q 047474 180 LYPCMQCADIFFL-----------KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ-EKMSKSDPS 247 (326)
Q Consensus 180 ~YP~lQaaD~~~l-----------~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~-~KMSKS~~~ 247 (326)
+||+|||||++++ +++++|||.|||+|++++|++++|+|. ++|.++++|+|||| +|. +|||||.++
T Consensus 279 ~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~-~~p~~l~~pll~gL-dG~~~KMSKS~~n 356 (477)
T 1r6t_A 279 SFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY-PKPALLHSTFFPAL-QGAQTKMSASDPN 356 (477)
T ss_dssp HHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTC-CCCEEEEECCCEET-TEEEEECCTTSTT
T ss_pred hhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCC-CCceeeecccccCC-CCCccccCCCCCC
Confidence 9999999999994 568999999999999999999999995 47889999999999 563 699999987
Q ss_pred CceecCCCHHHHHHHHHh-ccCCC-----------CCCCCCcHHHHHHHhc
Q 047474 248 SAIYMEDEEAEVNVKIKK-AYCPP-----------KIVEGNPCLEYIKYII 286 (326)
Q Consensus 248 s~I~L~D~~~~i~~KI~k-A~c~~-----------~~~~~n~vl~~~~~~i 286 (326)
++|||+|+|++|++||++ |||++ ++|+.++++.|++++.
T Consensus 357 saI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft 407 (477)
T 1r6t_A 357 SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFL 407 (477)
T ss_dssp CCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHC
T ss_pred CceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHc
Confidence 799999999999999999 99987 6788899999999865
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.04 E-value=2.4e-09 Score=100.45 Aligned_cols=209 Identities=14% Similarity=0.101 Sum_probs=111.1
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhH
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~ 136 (326)
.|||.+||||+....+.+...+..|.+.++-|-|. +++ + ........+.+++.++|++++.. +++||+.+
T Consensus 13 sPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt----D~~--R---~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~ 82 (298)
T 1nzj_A 13 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI----DPP--R---EVPGAAETILRQLEHYGLHWDGD-VLWQSQRH 82 (298)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS----CGG--G---SCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC----Cch--h---hHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCH
Confidence 68899999995433335555666788888888883 322 1 22456677788999999999875 78899843
Q ss_pred HhhhhhhHHHHHHhhh----ccCHHHHHhhh-----------------hhhccccc-----Cccchhhhhhhh-hhhhhh
Q 047474 137 NARADEYWPLVMDIAR----RNKLPRIMRCC-----------------QIMGRSEQ-----DELTAAQILYPC-MQCADI 189 (326)
Q Consensus 137 ~~~~~~~~~~~~~i~~----~~tl~~~~~~~-----------------~~~~r~~~-----~~~~~~~~~YP~-lQaaD~ 189 (326)
... ..+...+.+-+. .+|..++++.. .+.-|... +.+-.|.+.++. .+.-|+
T Consensus 83 ~~y-~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~ 161 (298)
T 1nzj_A 83 DAY-REALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDF 161 (298)
T ss_dssp HHH-HHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCC
T ss_pred HHH-HHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCE
Confidence 211 122222222111 34555554420 00000000 001112222222 233344
Q ss_pred cc-------------------ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCce
Q 047474 190 FF-------------------LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI 250 (326)
Q Consensus 190 ~~-------------------l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I 250 (326)
+. .+.+.++-|.|+..+-..-..+.+-+|.. .|...|.|+|.+. +| +||||+..+..|
T Consensus 162 VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~-~p~~~H~pll~~~-~g-~KLSKR~g~~~v 238 (298)
T 1nzj_A 162 IIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWK-VPDYIHLPLALNP-QG-AKLSKQNHAPAL 238 (298)
T ss_dssp EEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCC-CCEEEEECBCCC---------------CC
T ss_pred EEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCC-CCeEEEeeeeECC-CC-CcccccCCccCh
Confidence 43 35667777999988877777777889864 5888899999999 77 699999865445
Q ss_pred ecCCCHHHHHHHHHh-ccCCCCCCCCCcHH
Q 047474 251 YMEDEEAEVNVKIKK-AYCPPKIVEGNPCL 279 (326)
Q Consensus 251 ~L~D~~~~i~~KI~k-A~c~~~~~~~n~vl 279 (326)
--.+...-+..-+.. -++++.+.+...+-
T Consensus 239 ~~~~~~~~~~~~l~~lG~~~~~~~~~~~~~ 268 (298)
T 1nzj_A 239 PKGDPRPVLIAALQFLGQQAEAHWQDFSVE 268 (298)
T ss_dssp CSSCCHHHHHHHHHHTTCCCCSCGGGSCHH
T ss_pred hcCCccHHHHHHHHHcCCCCCcccccCCHH
Confidence 444555444444443 34544433333333
No 38
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.69 E-value=7.3e-07 Score=88.88 Aligned_cols=214 Identities=13% Similarity=0.095 Sum_probs=127.9
Q ss_pred ccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChh
Q 047474 56 FEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEE 135 (326)
Q Consensus 56 ~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~ 135 (326)
=.|||.+||||.-...+++...+..|.+.++=|-|. |+ .++ .......+.+++..+|++++. ..+.||+-
T Consensus 8 PSPtG~lHiG~artal~n~l~Ar~~~G~filRieDt-----D~-~R~---~~~~~~~i~~dL~wLGl~wde-~~~~QS~r 77 (492)
T 2cfo_A 8 PSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDT-----DR-ERS---RPEYTENILEGLQWLGLTWDE-GPYFQSDR 77 (492)
T ss_dssp CCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-----SS-SSC---CHHHHHHHHHHHHHTTCCCSE-EEEEGGGC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeC-----Cc-ccc---chHHHHHHHHHHHHcCCCCCC-CCccccCC
Confidence 368899999995433334555556788888888776 22 122 245566777899999999986 37889984
Q ss_pred HHhhhhhhHHHHHHhhh----ccCHHHHHhhh----------hhh-----------------c-----ccccC-------
Q 047474 136 INARADEYWPLVMDIAR----RNKLPRIMRCC----------QIM-----------------G-----RSEQD------- 172 (326)
Q Consensus 136 ~~~~~~~~~~~~~~i~~----~~tl~~~~~~~----------~~~-----------------~-----r~~~~------- 172 (326)
+... ..+...+++-+. .+|-.++.+.. .+. + |...+
T Consensus 78 ~~~y-~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~ 156 (492)
T 2cfo_A 78 LDLY-RQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEW 156 (492)
T ss_dssp HHHH-HHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEE
T ss_pred HHHH-HHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEE
Confidence 4222 122222221111 12222221100 000 1 11000
Q ss_pred -----------ccch---------------hhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCccee
Q 047474 173 -----------ELTA---------------AQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIIL 226 (326)
Q Consensus 173 -----------~~~~---------------~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l 226 (326)
...+ |..+|-+--+.|....+.+.++-|.|+..+-..-..+.+.+|.. .|...
T Consensus 157 ~D~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~-~P~~~ 235 (492)
T 2cfo_A 157 QDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGAT-PPNFA 235 (492)
T ss_dssp EETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCC-CCEEE
T ss_pred EecceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCC-CceEE
Confidence 0011 33333344444555567889999999999888888888999965 68888
Q ss_pred ecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh-ccCC-CCCCCCCcHHHHHHHh
Q 047474 227 SHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK-AYCP-PKIVEGNPCLEYIKYI 285 (326)
Q Consensus 227 ~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k-A~c~-~~~~~~n~vl~~~~~~ 285 (326)
|.|+|.+. +| +|||||+.+. .+.+ .|+.|..-+.. -.++ +...+.-.+=++++.|
T Consensus 236 H~plil~~-~g-~KLSKr~g~~--~l~~~r~~G~~peal~~~l~~lG~s~~~~~~e~~~~~e~i~~f 298 (492)
T 2cfo_A 236 HTPLILNS-TG-QKLSKRDGVT--SISDFRAMGYLAPALANYMTLLGWSPPEGVGELFTLDLAAKHF 298 (492)
T ss_dssp EECCEECS-SS-SBCCTTSSCC--BHHHHHHTTCCHHHHHHHHHHTTBCCCTTTCSCCCHHHHHHHC
T ss_pred EeeeEECC-CC-CEecccCCcc--cHHHHHHCCCCHHHHHHHHHHhCCCCCCccccccCHHHHHhhc
Confidence 99999999 78 6999998543 3332 68888888876 3444 2323444444555553
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.69 E-value=1.4e-07 Score=93.53 Aligned_cols=214 Identities=11% Similarity=0.094 Sum_probs=128.5
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE-------F 129 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~-------~ 129 (326)
.|||.+||||.-...+++...+..|.+.++=|-|. |+. ++ .......+.+++..+|++++..- .
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-----D~~-R~---~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT-----DRA-RY---VPGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-----CTT-SC---CTTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-----CCc-cc---ChHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 68999999995433335555566788877777776 321 22 23455667788999999998741 3
Q ss_pred EeCChhHHhhhhhhHHHHHHhhh----ccCHHHHHhhh-------------hh--------hc-----c--cccC-c---
Q 047474 130 LWSSEEINARADEYWPLVMDIAR----RNKLPRIMRCC-------------QI--------MG-----R--SEQD-E--- 173 (326)
Q Consensus 130 ~~~Sd~~~~~~~~~~~~~~~i~~----~~tl~~~~~~~-------------~~--------~~-----r--~~~~-~--- 173 (326)
+.||+-+... ..|...+++-+. .+|-.++.+.. +. .+ | ...+ .
T Consensus 80 ~~QS~r~~~y-~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~ 158 (468)
T 1j09_A 80 YRQSERLPLY-QKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEV 158 (468)
T ss_dssp CBGGGCHHHH-HHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEE
T ss_pred eeccCCHHHH-HHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 8899843211 122222222111 23333332210 00 00 0 0000 0
Q ss_pred --cchhhhhhhhhhhhhhccc-------------------cCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCccc
Q 047474 174 --LTAAQILYPCMQCADIFFL-------------------KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLP 232 (326)
Q Consensus 174 --~~~~~~~YP~lQaaD~~~l-------------------~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp 232 (326)
+-.|.+.+|..+.-|++.+ +.+.++-|.|+..+...-.-+.+.+|.. .|...+.|++.
T Consensus 159 ~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~-~p~~~h~~li~ 237 (468)
T 1j09_A 159 KDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWE-APRFYHMPLLR 237 (468)
T ss_dssp EETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCC-CCEEEEECCCB
T ss_pred EeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCC-CCeEEEeeeee
Confidence 1123355555555566554 4567777999999999999999999965 58888889999
Q ss_pred CCCCCCccccCCCCCCceecCC------CHHHHHHHHHh-ccCCCCCCCCCcHHHHHHHh
Q 047474 233 GLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK-AYCPPKIVEGNPCLEYIKYI 285 (326)
Q Consensus 233 ~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k-A~c~~~~~~~n~vl~~~~~~ 285 (326)
+. +| +||||++.+. .|.+ .|+.|..-+.. -.+++...+.-.+=++++.|
T Consensus 238 ~~-~g-~klSKR~g~~--~l~~~~~~G~~peal~~~l~~lG~~~~~~~~~~~~~el~~~f 293 (468)
T 1j09_A 238 NP-DK-TKISKRKSHT--SLDWYKAEGFLPEALRNYLCLMGFSMPDGREIFTLEEFIQAF 293 (468)
T ss_dssp CT-TS-CBCCTTTSCC--BHHHHHHTTCCHHHHHHHHHHHSCCCTTCCSCCCHHHHHHHC
T ss_pred CC-CC-Cccccccchh--hHHHHHHCCCCHHHHHHHHHHhccCCcccccCCCHHHHHhhC
Confidence 99 77 6999998543 3332 68888888876 44444333444444555554
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.64 E-value=1.4e-07 Score=94.11 Aligned_cols=214 Identities=11% Similarity=0.048 Sum_probs=126.8
Q ss_pred cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 047474 57 EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV-------EF 129 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~-------~~ 129 (326)
.|||.|||||.....+++...+..|.+.++=|-|. |+. ++ .......+.+++..+|++++.- ..
T Consensus 14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt-----D~~-R~---~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT-----DAQ-RD---SEESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-----CTT-TC---CHHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-----CCc-cc---ChHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 78899999995433335555566677766657776 331 22 2355667778899999999862 47
Q ss_pred EeCChhHHhhhhhhHHHHHHhhh----ccCHHHHHhhh---------hhhc----------------------c--cccC
Q 047474 130 LWSSEEINARADEYWPLVMDIAR----RNKLPRIMRCC---------QIMG----------------------R--SEQD 172 (326)
Q Consensus 130 ~~~Sd~~~~~~~~~~~~~~~i~~----~~tl~~~~~~~---------~~~~----------------------r--~~~~ 172 (326)
+.||+-. ..-..|...+++-+. .+|-.++.+.. .+.+ | ....
T Consensus 85 ~~QS~r~-~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 163 (498)
T 2ja2_A 85 YRQSQRA-EIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDD 163 (498)
T ss_dssp CBGGGCH-HHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eeeecCH-HHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCC
Confidence 8899833 322223333322211 23444442210 0000 0 0000
Q ss_pred c-----cchhhhhhhhhhhhhhccc-------------------cCcEEEeccchhHHHHHHHHHHHHh-----cCcCCc
Q 047474 173 E-----LTAAQILYPCMQCADIFFL-------------------KADICQLGMDQRKVNVLAREYCDDI-----KRKNKP 223 (326)
Q Consensus 173 ~-----~~~~~~~YP~lQaaD~~~l-------------------~~d~~~~G~DQ~~~~~lar~~~~k~-----~~~~~p 223 (326)
. .-.|.+.++.-+.-|++.+ +.+.++-|.|+..+...-+.+.+.+ |.. .|
T Consensus 164 ~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~~-~P 242 (498)
T 2ja2_A 164 DLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAER-IP 242 (498)
T ss_dssp CEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCCC-CC
T ss_pred ceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCCC-CC
Confidence 0 0113344444444455533 5677888999999988888888888 754 58
Q ss_pred ceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh-ccCCCCCCCCCcHHHHHHHh
Q 047474 224 IILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK-AYCPPKIVEGNPCLEYIKYI 285 (326)
Q Consensus 224 ~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k-A~c~~~~~~~n~vl~~~~~~ 285 (326)
.+.+.|++.+. +| +||||++.. ..|.+ .|+.+..-+.. -.+++.+.+.-.+=+++++|
T Consensus 243 ~~~h~plil~~-~g-~KLSKR~g~--~~l~~~r~~G~~peAl~~~l~~lG~s~~~~~e~~s~~eli~~f 307 (498)
T 2ja2_A 243 KFAHLPTVLGE-GT-KKLSKRDPQ--SNLFAHRDRGFIPEGLLNYLALLGWSIADDHDLFGLDEMVAAF 307 (498)
T ss_dssp EEEEECCEECS-SS-SBCCTTSGG--GBHHHHHHHTCCHHHHHHHHHTSSCCSCSSCCCCCHHHHHHHC
T ss_pred eEEEeeeeECC-CC-CcccccCCc--ccHHHHHhCCCCHHHHHHHHHHhCCCCCcccccCCHHHHHhhC
Confidence 88889999998 77 699999853 33333 57777777766 33434333444555666664
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.59 E-value=3.8e-07 Score=90.80 Aligned_cols=214 Identities=12% Similarity=0.084 Sum_probs=123.8
Q ss_pred cccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE------
Q 047474 55 GFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVE------ 128 (326)
Q Consensus 55 G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~------ 128 (326)
.=.|||.+||||.-...+++...+..|.+.++=|-|. |+. ++ .......+.+++..+|++++..-
T Consensus 31 APsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-----D~~-R~---~~~~~~~I~~dL~wlGl~wDe~~~~gG~~ 101 (488)
T 3afh_A 31 APSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT-----DTE-RS---SREYEQQILESLRWCGLDWDEGPDIGGDF 101 (488)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-----CTT-TC---CHHHHHHHHHHHHHTTCCCSBBTTTBCTT
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC-----Ccc-cc---cHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 3478899999995433334555566788888777776 331 22 34455667789999999998642
Q ss_pred -EEeCChhHHhhhhhhHHHHHHhhhc----cCHHHHHh---------------hh--hhhcccccCc-----cchhhhh-
Q 047474 129 -FLWSSEEINARADEYWPLVMDIARR----NKLPRIMR---------------CC--QIMGRSEQDE-----LTAAQIL- 180 (326)
Q Consensus 129 -~~~~Sd~~~~~~~~~~~~~~~i~~~----~tl~~~~~---------------~~--~~~~r~~~~~-----~~~~~~~- 180 (326)
.++||+-. ..=..+...+.+-+.. +|-.++.+ .. .+.-|..... .-.|.+.
T Consensus 102 gp~~QSer~-~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~ 180 (488)
T 3afh_A 102 GPYRQSERL-EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEF 180 (488)
T ss_dssp CCCBGGGCH-HHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEE
T ss_pred CCeeeeCCH-HHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEee
Confidence 58899833 2112222223222111 11111111 00 0000010000 0012222
Q ss_pred ---------------hhhhh---hhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCcccc
Q 047474 181 ---------------YPCMQ---CADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMS 242 (326)
Q Consensus 181 ---------------YP~lQ---aaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMS 242 (326)
||..+ +.|=...+.+.++-|.|+..+--.-..+.+.+|.. .|...|.|+|.+. +| +|||
T Consensus 181 ~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~-~P~f~H~pli~~~-~g-~KLS 257 (488)
T 3afh_A 181 DNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWE-APVFMHIPLILGS-DR-TPLS 257 (488)
T ss_dssp EGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCC-CCEEEEECCEECT-TS-SBCC
T ss_pred cCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCC-CCeEEEEeeeeCC-CC-Cccc
Confidence 22222 22323346788889999999999889999999965 5888899999999 77 6999
Q ss_pred CCCCCCceecCC------CHHHHHHHHHh-ccCCCCCCCCCcHHHHHHH
Q 047474 243 KSDPSSAIYMED------EEAEVNVKIKK-AYCPPKIVEGNPCLEYIKY 284 (326)
Q Consensus 243 KS~~~s~I~L~D------~~~~i~~KI~k-A~c~~~~~~~n~vl~~~~~ 284 (326)
|++.+ +.|.+ .|+.|..-+.. -.+++.+ +...+=++++.
T Consensus 258 KR~g~--~~l~~~r~~G~~peal~n~l~~lG~s~~~~-e~~s~~e~i~~ 303 (488)
T 3afh_A 258 KRHGA--TSVEHFRREGILSRALMNYLALLGWRVEGD-EIFTIEEKLQS 303 (488)
T ss_dssp TTTSC--CBHHHHHHHTCCHHHHHHHHHHTTCCCSSC-SCCCHHHHGGG
T ss_pred CcCCc--ccHHHHHHCCCCHHHHHHHHHHhCCCCccc-ccCCHHHHHhh
Confidence 99853 44443 68888888876 3443333 43344444343
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.48 E-value=3.2e-07 Score=93.36 Aligned_cols=195 Identities=12% Similarity=0.108 Sum_probs=114.3
Q ss_pred ccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------E
Q 047474 56 FEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERV-------E 128 (326)
Q Consensus 56 ~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~-------~ 128 (326)
=.|||.+||||+-...+.+...+..|.+.++=|.|. |+. +. .......+.+++..+|++++.. -
T Consensus 136 PsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt-----D~~-r~---~~~~~~~I~~dL~wlGl~~D~~~~~gG~~g 206 (592)
T 3al0_C 136 PSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT-----DTE-RS---SREYEQQILESLRWCGLDWDEGPDIGGDFG 206 (592)
T ss_dssp CCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-----CSS-SC---CHHHHHHHHHHHHHTTCCCSBBTTTBCTTC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc-----Chh-hc---cHHHHHHHHHHHHHcCCCCCCCCCcCCCCC
Confidence 588999999995333334444455688888888883 321 22 2445566778899999999863 2
Q ss_pred EEeCChhHHhhhhhhHHHHHHhhhcc----CHHH---------------HHhhh--hhhcccccC-----ccchhhhh--
Q 047474 129 FLWSSEEINARADEYWPLVMDIARRN----KLPR---------------IMRCC--QIMGRSEQD-----ELTAAQIL-- 180 (326)
Q Consensus 129 ~~~~Sd~~~~~~~~~~~~~~~i~~~~----tl~~---------------~~~~~--~~~~r~~~~-----~~~~~~~~-- 180 (326)
.++||+-. ..=..+...+.+-+... |-.+ +.... .+.-|.... .+-.|.+.
T Consensus 207 p~~qSer~-~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~~~ 285 (592)
T 3al0_C 207 PYRQSERL-EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFD 285 (592)
T ss_dssp CCBSTTCH-HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEECC
T ss_pred CeeeeCCH-HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceeeec
Confidence 57899833 21122222232222111 1111 11000 000011000 00112222
Q ss_pred --------------hhhhh---hhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccC
Q 047474 181 --------------YPCMQ---CADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSK 243 (326)
Q Consensus 181 --------------YP~lQ---aaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSK 243 (326)
||..+ +.|=...+.+.++-|.|+..+...-+.+.+.+|.. .|...|.|+|.+. +| +||||
T Consensus 286 ~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~-~P~~~hlpli~~~-~g-~KLSK 362 (592)
T 3al0_C 286 NSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWE-APVFMHIPLILGS-DR-TPLSK 362 (592)
T ss_dssp SSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCC-CCBCCEECCCBCT-TS-SBCCT
T ss_pred cccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCC-CCeEEEeeeeeCC-CC-Ccccc
Confidence 23222 22222346778888999999999999999999964 5888888999999 77 69999
Q ss_pred CCCCCceecCC------CHHHHHHHHHh
Q 047474 244 SDPSSAIYMED------EEAEVNVKIKK 265 (326)
Q Consensus 244 S~~~s~I~L~D------~~~~i~~KI~k 265 (326)
++.+ +.|.+ .|+.|..-+..
T Consensus 363 R~g~--~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 363 RHGA--TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp TTCS--SBHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCc--ccHHHHHHCCCCHHHHHHHHHH
Confidence 9853 34433 57888877765
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.13 E-value=5.3e-05 Score=75.30 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=65.1
Q ss_pred cccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHH
Q 047474 191 FLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIK 264 (326)
Q Consensus 191 ~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~ 264 (326)
..+.+.++.|.||..+...-.-+.+.+|.. .|...|.|++.+. +| +||||++.+. .|.+ .|+.+..-+.
T Consensus 216 ~~githvirG~D~~~~t~~q~~l~~aLG~~-~p~~~H~plil~~-~G-~KLSKR~g~~--~l~~~~~~G~~peal~~~l~ 290 (481)
T 2o5r_A 216 LMEITHVIRGDDHLSNTLRQLALYEAFEKA-PPVFAHVSTILGP-DG-KKLSKRHGAT--SVEAFRDMGYLPEALVNYLA 290 (481)
T ss_dssp HTTCSEEEEEGGGHHHHHHHHHHHHHTTCC-CCEEEEECCEECT-TS-SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHH
T ss_pred hCCCCeEEEChhHHHhHHHHHHHHHHcCCC-CCeEEEEeeEECC-CC-CcccCcCCcc--cHHHHHHCCCCHHHHHHHHH
Confidence 357889999999999999888899999964 5888888998888 77 6999998533 3433 5777777776
Q ss_pred hc-cCCCCCCCCCcHHHHHHHhc
Q 047474 265 KA-YCPPKIVEGNPCLEYIKYII 286 (326)
Q Consensus 265 kA-~c~~~~~~~n~vl~~~~~~i 286 (326)
.. .++++..+...+-+.++++.
T Consensus 291 ~lG~s~~~~~e~~~~~e~i~~f~ 313 (481)
T 2o5r_A 291 LLGWSHPEGKELLTLEELISSFS 313 (481)
T ss_dssp TSSBCCTTCCCCCCHHHHHHHCC
T ss_pred HhCCCCCcccccCCHHHHHHhCC
Confidence 63 33333334444556666643
No 44
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.02 E-value=3.6e-05 Score=77.33 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHhhcccccCHHH--HHHHHhcCC-CCeEEEcc--cCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecc
Q 047474 17 QMSVEEKFRLVRSIGEECIQEDE--LLNLLTKKP-QPICYDGF--EPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADW 91 (326)
Q Consensus 17 ~~~~~~~~~li~r~~~e~~~~~e--L~~lL~~~~-~~~iy~G~--~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~ 91 (326)
+||.||+.+.+....-|.+.+.+ =..+..-++ ...+.+=| .|||.+||||+-...+.+......|.+.++=|-|.
T Consensus 59 ~~~~e~~~~~l~~~~pe~~~~~~~~~~~~~~L~~~~g~v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt 138 (553)
T 3aii_A 59 SLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGEVVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT 138 (553)
T ss_dssp ----------------------------CCCCSSCCSCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred cCCHHHHHHHHHHhChhhhhhhhhhcccCCCCCCCCCceEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC
Confidence 47778777777665434332221 001111010 11133444 67799999995333223333344566666655554
Q ss_pred eeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHHhhh----ccCHHHHHhhh--h-
Q 047474 92 FAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIAR----RNKLPRIMRCC--Q- 164 (326)
Q Consensus 92 ~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~i~~----~~tl~~~~~~~--~- 164 (326)
|+. + ........+.+++..+|++++ +...||+.+...- .+...+++-+. .+|-.++.... .
T Consensus 139 -----D~~-R---~~~e~~~~I~edL~wLGl~wd--~~~~qSdr~~~y~-~~~~~Li~~G~AY~c~cs~eei~~~r~~g~ 206 (553)
T 3aii_A 139 -----DPR-R---VDPEAYDMIPADLEWLGVEWD--ETVIQSDRMETYY-EYTEKLIERGGAYVCTCRPEEFRELKNRGE 206 (553)
T ss_dssp -----CGG-G---CCTTHHHHHHHHHHHHTCCCS--EEEEGGGGHHHHH-HHHHHHHHTTSEEEECSCHHHHHHHHHTTC
T ss_pred -----Ccc-c---ccHHHHHHHHHHHHHcCCCCC--CCcccccCHHHHH-HHHHHHHHcCCceeCCCCHHHHHHHhhcCC
Confidence 221 1 123455667788999999997 5799999543221 12222211110 11222221100 0
Q ss_pred -------------------hhc-------ccccC----ccc----------------hhh--hhhhhhh---hhhhcccc
Q 047474 165 -------------------IMG-------RSEQD----ELT----------------AAQ--ILYPCMQ---CADIFFLK 193 (326)
Q Consensus 165 -------------------~~~-------r~~~~----~~~----------------~~~--~~YP~lQ---aaD~~~l~ 193 (326)
..| |...+ ..+ .|. ..||..+ +.|....+
T Consensus 207 ~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~G 286 (553)
T 3aii_A 207 ACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLG 286 (553)
T ss_dssp CCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTT
T ss_pred CCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCC
Confidence 000 11000 000 011 1344433 34555568
Q ss_pred CcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCC
Q 047474 194 ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246 (326)
Q Consensus 194 ~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~ 246 (326)
.+.++.|.|...+-..=.-+...+|.. .|...|.|+| .+ +| +|||||..
T Consensus 287 IThviRG~D~~~nt~~Q~~l~~alG~~-~P~y~H~~~L-~~-~g-~KLSKR~~ 335 (553)
T 3aii_A 287 VTHVLRGKDHLANREKQEYLYRHLGWE-PPEFIHYGRL-KM-DD-VALSTSGA 335 (553)
T ss_dssp CCEEEC-----CHHHHHHHHHHHHTCC-CCEEECCCCB-C---------CHHH
T ss_pred CceEeccHhhhhCHHHHHHHHHHcCCC-CCeEEEeeEE-ec-CC-ceechhhh
Confidence 999999999887666555567778854 6878888998 55 67 69999973
No 45
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.96 E-value=3.3e-05 Score=77.49 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=37.3
Q ss_pred cccCcEEEeccchhH---HHHHHHHHH-HHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHH
Q 047474 191 FLKADICQLGMDQRK---VNVLAREYC-DDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNV 261 (326)
Q Consensus 191 ~l~~d~~~~G~DQ~~---~~~lar~~~-~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~ 261 (326)
.+++++-++|.|+.. ......+++ .-+|.. .|..+++++|..--+| +|||||. +|.|.+.| .|+.++.
T Consensus 228 ~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~alG~~-~p~~~h~~~i~~~g~g-~KmSKs~-Gn~i~~~~~~~~~~pdalR~ 304 (523)
T 1irx_A 228 HFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKE-APLSLMYEFVGIKGQK-GKMSGSK-GNVILLSDLYEVLEPGLVRF 304 (523)
T ss_dssp HSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCC-CCBCCEECCEEESCC-----------CCCCHHHHHTTSCHHHHHH
T ss_pred HcCCCCcCCCcCccCCCcchhhHHHHHHHHhCCC-CCeEEEEEEEEeCCCC-CCCCCcC-CCCCCHHHHHHHcCHHHHHH
Confidence 344555588999876 223345555 456653 4777888888663024 7999998 46665433 5666666
Q ss_pred HHHh
Q 047474 262 KIKK 265 (326)
Q Consensus 262 KI~k 265 (326)
-+.+
T Consensus 305 ~l~~ 308 (523)
T 1irx_A 305 IYAR 308 (523)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 6654
No 46
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.93 E-value=0.0002 Score=71.03 Aligned_cols=71 Identities=14% Similarity=0.032 Sum_probs=45.7
Q ss_pred ccCcEEEeccchhHHHH-HHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 192 LKADICQLGMDQRKVNV-LAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~-lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
+.+|+.++|.||...+. +-.-.+..+|..+.-.++++.+|..- +| +|||||. +|.|.+.| .++.++--+..
T Consensus 250 ~p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~-~G-~KMSKS~-GN~i~p~d~i~~~g~DalR~~ll~ 326 (500)
T 2d5b_A 250 WPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGP-DG-RKMSKTL-GNVVDPFALLEKYGRDALRYYLLR 326 (500)
T ss_dssp GGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECT-TS-SCCCTTT-TCCCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeC-CC-CcccccC-CCCCCHHHHHHhcCcHHHHHHHHh
Confidence 36799999999987332 21112233464321235677888754 67 6999998 68888765 56666666654
No 47
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.86 E-value=0.00048 Score=68.44 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=117.2
Q ss_pred ccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCChh
Q 047474 56 FEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEE 135 (326)
Q Consensus 56 ~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~Sd~ 135 (326)
=.|||.+||||.-...+.+...+..|.+.++=|-|. +.+ + ........+.+++..+|++++.. .+.||+-
T Consensus 32 PSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt----D~~--R---~~~~~~~~i~~dl~wlGl~~d~~-~~~qS~r 101 (490)
T 4g6z_A 32 PSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT----DVE--R---SSQEAVDAILEGMAWLGLDYDEG-PYYQMQR 101 (490)
T ss_dssp CCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CGG--G---CCHHHHHHHHHHHHHTTCCCSEE-EEEGGGC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC----Ccc--c---ccHHHHHHHHHHHHHcCCCCCCC-CcccccC
Confidence 377899999995433334444455677766666552 221 1 12456667778999999999863 7889984
Q ss_pred HHhhhhhhHHHHHHhhh----ccCHHHHHhh--h--------hhhc---------------------ccc--cC-ccc--
Q 047474 136 INARADEYWPLVMDIAR----RNKLPRIMRC--C--------QIMG---------------------RSE--QD-ELT-- 175 (326)
Q Consensus 136 ~~~~~~~~~~~~~~i~~----~~tl~~~~~~--~--------~~~~---------------------r~~--~~-~~~-- 175 (326)
+... ..|..-+++-+. .+|-.++... . .+-+ |.. .+ .+.
T Consensus 102 ~~~y-~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~ 180 (490)
T 4g6z_A 102 MDRY-REVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWD 180 (490)
T ss_dssp HHHH-HHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEE
T ss_pred HHHH-HHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEE
Confidence 4222 223332322111 1233332210 0 0000 000 00 000
Q ss_pred ---h-------------------hhhhhhhhhhhhhccccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccC
Q 047474 176 ---A-------------------AQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPG 233 (326)
Q Consensus 176 ---~-------------------~~~~YP~lQaaD~~~l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~ 233 (326)
- |..+|-+--+.|=...+.+.++-|.|...+---=..+.+-+|.. .|...|.|+|.+
T Consensus 181 D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~-~P~f~HlpLi~~ 259 (490)
T 4g6z_A 181 DAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGE-VPVYAHLPTVLN 259 (490)
T ss_dssp ETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCC-CCEEEEECCEEC
T ss_pred EeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCC-CCeEEEecceeC
Confidence 0 11122222222222346789999999987766666778889965 688899999999
Q ss_pred CCCCCccccCCCCCCcee-cC---CCHHHHHHHHHh-ccCCCCCCCCCcHHHHHHHh
Q 047474 234 LQQGQEKMSKSDPSSAIY-ME---DEEAEVNVKIKK-AYCPPKIVEGNPCLEYIKYI 285 (326)
Q Consensus 234 L~~g~~KMSKS~~~s~I~-L~---D~~~~i~~KI~k-A~c~~~~~~~n~vl~~~~~~ 285 (326)
- +| +||||.++..+|. +- -.|+.|.+-+.. -.+++ +.+.-..-++++.|
T Consensus 260 ~-~g-~KLSKR~g~~sl~~~r~~G~~peal~n~l~~lG~s~~-~~e~~s~~eli~~F 313 (490)
T 4g6z_A 260 E-QG-EKMSKRHGAMSVMGYRDAGYLPEAVLNYLARLGWSHG-DAEIFTREQFVEWF 313 (490)
T ss_dssp T-TS-SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHTSSBCCT-TCCCCCHHHHHHHC
T ss_pred C-CC-CcccCCCCCcCHHHHHHCCCCHHHHHHHHHHhCCCCC-CccccCHHHHHhhC
Confidence 8 77 6999998543331 11 268888888866 23322 22334455666664
No 48
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.69 E-value=0.00055 Score=67.90 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=44.2
Q ss_pred cCcEEEeccchhHH-HHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 193 KADICQLGMDQRKV-NVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~-~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
.+|+.++|.||... ..+-.-.+..+|..+.-.++++.+|.. +| +|||||. +|.|.+.| .++.++--+..
T Consensus 250 p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~--~G-~KMSKS~-GN~i~~~dli~~~g~DalR~~ll~ 324 (497)
T 2csx_A 250 PADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV--EG-KKMSKTL-GNVVDPYEVVQEYGLDEVRYFLLR 324 (497)
T ss_dssp SCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES--SS-SBCCTTT-TCCCCHHHHHHHHCHHHHHHHHHH
T ss_pred CceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe--CC-ceeCCcC-CCCCCHHHHHHHCCcHHHHHHHHh
Confidence 67899999999873 323112233446432113566777765 66 6999998 68888765 56666666654
No 49
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.63 E-value=0.0016 Score=65.20 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=31.3
Q ss_pred cCcEEEeccchhHHHHH---HHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 193 KADICQLGMDQRKVNVL---AREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~l---ar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
.+|+.+.|.||...+.. ++-.+ ++......++.+.++. + +| +|||||. +|.|.+.| .++.+|--+.
T Consensus 276 p~dv~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~-~G-~KMSKS~-GNvi~p~d~i~~~GaDalR~~ll 349 (536)
T 4dlp_A 276 PANAHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-N-RG-EKMSKSV-GNVIDPFELVERYGLDQLRYFLM 349 (536)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHHHHHHHCHHHHHHHHH
T ss_pred CcceEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-e-CC-ceecccC-CCCCCHHHHHHHcCcHHHHHHHH
Confidence 46899999999874321 33222 4532211345567774 4 77 6999998 68887755 4555555554
Q ss_pred h
Q 047474 265 K 265 (326)
Q Consensus 265 k 265 (326)
+
T Consensus 350 ~ 350 (536)
T 4dlp_A 350 R 350 (536)
T ss_dssp H
T ss_pred h
Confidence 4
No 50
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=97.56 E-value=0.0017 Score=63.18 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=30.9
Q ss_pred cCcEEEeccchhH-HHHHHHHHHHHh-cCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHH
Q 047474 193 KADICQLGMDQRK-VNVLAREYCDDI-KRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKI 263 (326)
Q Consensus 193 ~~d~~~~G~DQ~~-~~~lar~~~~k~-~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI 263 (326)
..|+.++|.|+.. |+..-.-...-+ +..+.+ +.+++.+|. + +| +|||||. +|.|.+.| .++.+|--+
T Consensus 244 ~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~-~G-~KMSKS~-GN~v~~~~ll~~g~g~D~lR~~l 319 (414)
T 3c8z_A 244 GLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-W-DG-HKMSKSR-GNLVLVSQLRAQGVDPSAIRLGL 319 (414)
T ss_dssp CEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHHHHHHTTCCHHHHHHHH
T ss_pred CceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-c-CC-eEccccc-CCcCCHHHHhhccCCcchheeEE
Confidence 5689999999864 555543333333 432212 344445664 3 66 6999998 68887643 455555555
Q ss_pred Hh
Q 047474 264 KK 265 (326)
Q Consensus 264 ~k 265 (326)
..
T Consensus 320 l~ 321 (414)
T 3c8z_A 320 FS 321 (414)
T ss_dssp HT
T ss_pred Ee
Confidence 44
No 51
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.50 E-value=0.00036 Score=68.89 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=41.3
Q ss_pred cCcEEEeccchh-HHHH--HHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 193 KADICQLGMDQR-KVNV--LAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 193 ~~d~~~~G~DQ~-~~~~--lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
..|+..+|.|+. +|++ .+.-.+- +|.......+|+.+|.. +| +|||||. +|.|.+.| .++.++--+.
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~--~G-~KMSKS~-GN~v~~~dll~~~g~dalR~~ll 294 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV--DR-EKMSKSL-GNFFTVRDVLKYYDAETVRYFLM 294 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE--TT-BCCCGGG-TCCCBHHHHHTTSCHHHHHHHHH
T ss_pred CceEEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE--CC-eEccccC-CCccChhHHhhhCCHHHHHHHHH
Confidence 458899999975 4433 3332221 35322123456667654 56 6999998 58887654 5666666555
Q ss_pred h
Q 047474 265 K 265 (326)
Q Consensus 265 k 265 (326)
.
T Consensus 295 ~ 295 (461)
T 1li5_A 295 S 295 (461)
T ss_dssp S
T ss_pred c
Confidence 4
No 52
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=97.50 E-value=0.0037 Score=63.15 Aligned_cols=67 Identities=19% Similarity=0.126 Sum_probs=42.6
Q ss_pred cCcEEEeccchhHHHHH---HHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 193 KADICQLGMDQRKVNVL---AREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~l---ar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
.+|+.+.|.||..++.+ ++-. -.|....-.++.+.+| .. +| +|||||. +|.|++.| .++.+|--+.
T Consensus 294 p~dv~~~GkDii~FH~~~wpa~L~--a~g~~~~~~v~~hg~v-~~-~G-~KMSKS~-GNvV~p~d~i~~~G~DalR~~ll 367 (564)
T 3kfl_A 294 PADVHVVGKDILKFHAIYWPAFLM--SAELPLPERLVSHGWW-TK-DH-KKISKSL-GNAFDPVEKAKEFGIDALKYFLM 367 (564)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHH--HTTCCCCSCEEEECCE-EE-TT-EECCTTT-TCCCCHHHHHHHHCHHHHHHHHH
T ss_pred ccceEEEeecccchHHHHHHHHHH--hCCCCCCcEEEEcccE-ee-CC-ccccccC-CCCCCHHHHHHHcCcHHHHHHHH
Confidence 56899999999774332 2212 2343321134566777 45 77 6999998 68887755 5666666665
Q ss_pred h
Q 047474 265 K 265 (326)
Q Consensus 265 k 265 (326)
+
T Consensus 368 ~ 368 (564)
T 3kfl_A 368 R 368 (564)
T ss_dssp H
T ss_pred H
Confidence 5
No 53
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=97.49 E-value=0.00064 Score=67.15 Aligned_cols=80 Identities=16% Similarity=0.047 Sum_probs=44.8
Q ss_pred EEEcccCCCCccchhhhhHHH--HHHHHH-HCCCeEEEEEecceeeecCC-------CCCCHHH-HHHHHHHHHHHHHHc
Q 047474 52 CYDGFEPSGRMHIAQGVMKAI--SVNKLT-SAGCKVKIWVADWFAQLNNK-------MGGDLKK-IQTVGRYLIEIWIAV 120 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~~--~~~~lq-~aG~~v~ilIaD~~a~~~~~-------~~~~~~~-i~~~~~~~~~~~~A~ 120 (326)
-++|--|.|.+||||.....+ .+.++. ..|++|.++. .++.. ++| .|.++.+ ..++...+.+++.++
T Consensus 29 YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~-n~dD~-ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~L 106 (462)
T 3tqo_A 29 YVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVR-NITDI-DDKIIKRAGENKESPAALAERFIQILHEDEKAL 106 (462)
T ss_dssp EECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEE-CBBCC-CHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEec-CcCCC-CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 457888889999999432221 244444 4799986663 22211 111 1222332 234555667888999
Q ss_pred CCCCCceEEEeCCh
Q 047474 121 GMRTERVEFLWSSE 134 (326)
Q Consensus 121 G~d~~k~~~~~~Sd 134 (326)
|+.++.. +-..++
T Consensus 107 gI~~d~~-~praTe 119 (462)
T 3tqo_A 107 RVLSPDQ-EPRATQ 119 (462)
T ss_dssp TCCCCSB-CCBGGG
T ss_pred CCCCCcc-ccChhh
Confidence 9987643 224444
No 54
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.33 E-value=0.0048 Score=61.65 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=62.3
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHHh
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIKK 265 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~k 265 (326)
.+.+.++-|.|...+--.=.-+.+-+|.. .|...|.|+|.+- +| +|+||.+.. ..+.+ .|+.+.+-+..
T Consensus 228 mgITHViRG~D~l~sTp~q~~l~~alg~~-~P~y~H~pli~~~-~g-~kLSKR~~~--~~v~~~~~~G~lPeAl~NyLal 302 (512)
T 4gri_A 228 MKITHVLRAQEWVSSGPLHVLLYKAFKWK-PPIYCHLPMVMGN-DG-QKLSKRHGS--TALRQFIEDGYLPEAIINYVTL 302 (512)
T ss_dssp TTCSEEEEEGGGGGGHHHHHHHHHHHTCC-CCEEEEECCCBCT-TS-SBCCTTTSC--CBHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCceeccccccccccHHHHHHHHHcCCC-CCeEEecchhccc-cc-cccCccccc--ccHHHHHHcCCChHHHHHHHHH
Confidence 46789999999988877777888889965 6999999999998 77 699999853 33332 46666666554
Q ss_pred -ccCCCCCCCCCcHHHHHHH
Q 047474 266 -AYCPPKIVEGNPCLEYIKY 284 (326)
Q Consensus 266 -A~c~~~~~~~n~vl~~~~~ 284 (326)
-.+++.+-|.-.+=++.+.
T Consensus 303 LGws~~~~~Eifs~~eli~~ 322 (512)
T 4gri_A 303 LGWSYDDKREFFSKNDLEQF 322 (512)
T ss_dssp SSBCSSSSCCCCCHHHHHHH
T ss_pred hCCCCcccchhhhHHHHHHH
Confidence 3333333355555555555
No 55
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=97.23 E-value=0.0024 Score=63.61 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=34.2
Q ss_pred cCcEEEeccchh-HHHHHHHHHHHHhc-CcCCcceeecCcccCCCCCCccccCCCCCCceecCC------CHHHHHHHHH
Q 047474 193 KADICQLGMDQR-KVNVLAREYCDDIK-RKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED------EEAEVNVKIK 264 (326)
Q Consensus 193 ~~d~~~~G~DQ~-~~~~lar~~~~k~~-~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D------~~~~i~~KI~ 264 (326)
..|+..+|.|.. +|++.-.-...-.. ..+..+.+|+.+|. . +| +|||||. +|.|.+.| +++.++--+.
T Consensus 253 ~~DIH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~-~G-~KMSKSl-GN~it~~dll~~gyg~d~lR~~ll 328 (501)
T 3sp1_A 253 ALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-M-DY-NKMSKSR-GNFITVKDLEDQNFSPLDFRYLCL 328 (501)
T ss_dssp CCCEEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-C-C------------CCCHHHHHHTTCCHHHHHHHHH
T ss_pred CceEEeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-e-CC-eEccccC-CCcCCHHHHHhcCCCHHHHHHHHH
Confidence 469999999964 66665444444333 22233456667775 4 67 7999998 57776532 4555555554
Q ss_pred h
Q 047474 265 K 265 (326)
Q Consensus 265 k 265 (326)
.
T Consensus 329 s 329 (501)
T 3sp1_A 329 T 329 (501)
T ss_dssp T
T ss_pred h
Confidence 4
No 56
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.19 E-value=0.01 Score=62.31 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=48.5
Q ss_pred EEE--cccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 047474 52 CYD--GFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEF 129 (326)
Q Consensus 52 iy~--G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~ 129 (326)
+.+ +=.|||.+||||.-...+.+......|.+.++=|-|. |+. +. ...+...+.+++..+|++++. ..
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT-----D~~-R~---~~e~~~~IledL~wLGl~wde-~~ 136 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT-----NPE-LA---RQEYVDSIADDLKWLGLDWGE-HF 136 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-----CTT-TC---CHHHHHHHHHHHHHHTCCCTT-CE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-----Ccc-cc---cHHHHHHHHHHHHHcCCCCCC-Cc
Confidence 445 5578899999995333223333345676766666554 321 22 345666777889999999865 37
Q ss_pred EeCChhH
Q 047474 130 LWSSEEI 136 (326)
Q Consensus 130 ~~~Sd~~ 136 (326)
++||+.+
T Consensus 137 ~~qSer~ 143 (851)
T 2hz7_A 137 YYASDYF 143 (851)
T ss_dssp EEGGGGH
T ss_pred ccHhhhH
Confidence 8899854
No 57
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.16 E-value=0.0073 Score=60.70 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=46.2
Q ss_pred EEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeC
Q 047474 53 YDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWS 132 (326)
Q Consensus 53 y~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIaD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~~ 132 (326)
=.+=.|||.+||||.-...+.+......|.+.++=|-|. |+. + ........+.+++..+|++++.. .+.|
T Consensus 30 RFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT-----D~~-R---~~~e~~~~I~edL~wLGl~wde~-~~~q 99 (553)
T 1qtq_A 30 RFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-----NPV-K---EDIEYVESIKNDVEWLGFHWSGN-VRYS 99 (553)
T ss_dssp EECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-----CGG-G---CCHHHHHHHHHHHHHTTCCCSSS-CEEG
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-----Cch-h---cCHHHHHHHHHHHHHcCCCCCCC-Ceeh
Confidence 345577899999994332223333345666666655554 221 1 22455667778899999998643 6889
Q ss_pred ChhH
Q 047474 133 SEEI 136 (326)
Q Consensus 133 Sd~~ 136 (326)
|+.+
T Consensus 100 Ser~ 103 (553)
T 1qtq_A 100 SDYF 103 (553)
T ss_dssp GGGH
T ss_pred cccH
Confidence 9854
No 58
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.01 E-value=0.0018 Score=65.81 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=35.2
Q ss_pred EEeccchhHHHHHHHHHHHHhcCcC-Ccce--eecCcccCCCCCCccccCCCCCCceecCC
Q 047474 197 CQLGMDQRKVNVLAREYCDDIKRKN-KPII--LSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 197 ~~~G~DQ~~~~~lar~~~~k~~~~~-~p~~--l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
-+.|.||..|+.-...++..+|... .... +.+.+|. + +| +|||||. ++.|.+.|
T Consensus 351 yV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~-~g-~KMSKr~-Gn~v~l~d 407 (592)
T 1iq0_A 351 NVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-L-EG-RQMSGRK-GLAVSVDE 407 (592)
T ss_dssp EEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-E-TT-BCSCC-----CCBHHH
T ss_pred EEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-c-CC-CcccCCC-CCccCHHH
Confidence 3679999999999999999998632 1123 3335564 3 55 6999998 58887654
No 59
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=96.39 E-value=0.016 Score=59.37 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=39.3
Q ss_pred EEEeccchhHHHHHHHHHHHHhcCcCCc-c--eeecCcccCCCCCCccccCCCCC--CceecCC
Q 047474 196 ICQLGMDQRKVNVLAREYCDDIKRKNKP-I--ILSHHMLPGLQQGQEKMSKSDPS--SAIYMED 254 (326)
Q Consensus 196 ~~~~G~DQ~~~~~lar~~~~k~~~~~~p-~--~l~~~~lp~L~~g~~KMSKS~~~--s~I~L~D 254 (326)
+-+.|.||..|+.-...++..+|....+ . ++.+.+|. + +| +|||||. + +.|.+.|
T Consensus 380 IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~-~~-~KMSkr~-G~~n~v~l~d 439 (629)
T 2zue_A 380 INVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-R-PE-GKFSGRK-GTWVGFTVDE 439 (629)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-B-TT-BCCCTTT-TTTTTCBHHH
T ss_pred EEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-c-CC-CcccCCC-CCCCeeeHHH
Confidence 5577999999999999999999864211 1 23335665 3 44 6999997 7 7888765
No 60
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=96.33 E-value=0.023 Score=57.94 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=39.9
Q ss_pred cCcEE--EeccchhHHHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC
Q 047474 193 KADIC--QLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 ~~d~~--~~G~DQ~~~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D 254 (326)
+.|.+ +.|.||..|+.-...+++.+|........|.++ |.- .||||+. ++.|.|.|
T Consensus 363 ~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~-G~~v~L~d 420 (607)
T 1f7u_A 363 HFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRK-GTVVFLDN 420 (607)
T ss_dssp CCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGG-TCCCBHHH
T ss_pred CCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCC-CCcccHHH
Confidence 44544 589999999999899999999642123555565 221 3799998 68888765
No 61
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=93.53 E-value=0.051 Score=57.97 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=44.5
Q ss_pred cCcEEEeccchhH---HHHHHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 193 KADICQLGMDQRK---VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 193 ~~d~~~~G~DQ~~---~~~lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
-+|+.+.|.||.. +-.+....+ -.+..+-..++.+.++... +| +|||||. +|.|...| .++.+|--+.
T Consensus 548 P~Dl~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~-~G-~KMSKSl-GNvV~P~dvi~~yGaDalR~~ll 623 (917)
T 1ffy_A 548 PADMYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDG-EG-KKMSKSL-GNVIVPDQVVKQKGADIARLWVS 623 (917)
T ss_dssp SBSEEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECT-TS-CCCCSSS-SCCCCHHHHHHHTCHHHHHHHHH
T ss_pred CceEEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcC-CC-cCccccc-CCcCChHHHHHhCCHHHHHHHHh
Confidence 4789999999963 333444444 2343221124566788776 67 6999998 68887765 5666665555
Q ss_pred h
Q 047474 265 K 265 (326)
Q Consensus 265 k 265 (326)
.
T Consensus 624 s 624 (917)
T 1ffy_A 624 S 624 (917)
T ss_dssp T
T ss_pred c
Confidence 4
No 62
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=93.45 E-value=0.092 Score=52.30 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=48.1
Q ss_pred CCe-EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecce---eeec--CCCCCCHHH-HHHHHHHHHHHH
Q 047474 49 QPI-CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWF---AQLN--NKMGGDLKK-IQTVGRYLIEIW 117 (326)
Q Consensus 49 ~~~-iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~---a~~~--~~~~~~~~~-i~~~~~~~~~~~ 117 (326)
++. |-+.+ -|+|.+||||+....+ .+.++++ .|++|.++-+..| +... .+.|.++.+ +.++...+.+++
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~ 88 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCF 88 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444 55553 6899999999543322 3555555 6999888765444 2111 012344443 455667778899
Q ss_pred HHcCCCCCc
Q 047474 118 IAVGMRTER 126 (326)
Q Consensus 118 ~A~G~d~~k 126 (326)
.++|++.|.
T Consensus 89 ~~lgi~~D~ 97 (542)
T 3u1f_A 89 EQMDYSIDY 97 (542)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCccCc
Confidence 999998874
No 63
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=93.13 E-value=0.029 Score=55.35 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=39.7
Q ss_pred cCc--EEEeccchhHHHHHHHHHHHHhcCcCCc-ceeecCcccCCCCCC-ccccCCCCCCceecCC
Q 047474 193 KAD--ICQLGMDQRKVNVLAREYCDDIKRKNKP-IILSHHMLPGLQQGQ-EKMSKSDPSSAIYMED 254 (326)
Q Consensus 193 ~~d--~~~~G~DQ~~~~~lar~~~~k~~~~~~p-~~l~~~~lp~L~~g~-~KMSKS~~~s~I~L~D 254 (326)
+.| +-+.|.||..|+.--..+++.+|..+.. .++++.++.-..+|+ .|||||. ++.|.+.|
T Consensus 234 ~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~-Gn~v~l~d 298 (464)
T 3fnr_A 234 GYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRA-GNFILMSD 298 (464)
T ss_dssp SCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---C-CSSCBHHH
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcC-CCCCCHHH
Confidence 356 4478999999999888889999964311 234456663223663 5999998 68888765
No 64
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=93.08 E-value=0.036 Score=55.10 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=42.5
Q ss_pred cCcEEEeccchhHHHHH-HHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 193 KADICQLGMDQRKVNVL-AREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~l-ar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
.+|+.++|.||...+.+ -.-.+...|..+...++.+.+|.. +| +|||||. +|.|.+.| .++.+|--+..
T Consensus 265 p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~--~G-~KMSKS~-GN~v~p~d~i~~~g~DalR~~ll~ 339 (524)
T 2x1l_A 265 PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN--RG-EKMSKSI-GNVVDPVNLVDTFGLDQVRYFLLR 339 (524)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE--CS-CSEETTT-EESSCHHHHHHHHCHHHHHHHHHH
T ss_pred CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe--CC-cccCCcC-CCCCCHHHHHHHcChHHHHHHHHh
Confidence 57999999999754332 112233345432113455566654 56 7999998 58888765 56666665554
No 65
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=92.84 E-value=0.088 Score=52.44 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=41.0
Q ss_pred cCcEEEeccchhHHHH---HHHHHHHHhcCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHH
Q 047474 193 KADICQLGMDQRKVNV---LAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIK 264 (326)
Q Consensus 193 ~~d~~~~G~DQ~~~~~---lar~~~~k~~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~ 264 (326)
-+|+.++|.||..++. .|+-++. |....-.++++.+|. . +| +|||||. +|.|...| .++.+|--+.
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l~-~-~G-~KMSKSl-GNvi~p~~~i~~ygaD~lR~~l~ 351 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWT-K-DR-KKISKSL-GNVFDPVEKAEEFGYDALKYFLL 351 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCCE-E-TT-BCCBTTT-TBCCCHHHHHHHHCHHHHHHHHH
T ss_pred cceEEEecccccccccchhHHHHHhh--cccccceecccccee-c-CC-ceecccc-CCCCChhHHHhhcCchHHHHHHH
Confidence 3689999999976543 2333333 432222345566654 3 66 7999998 58887655 5666665554
Q ss_pred h
Q 047474 265 K 265 (326)
Q Consensus 265 k 265 (326)
.
T Consensus 352 ~ 352 (542)
T 3u1f_A 352 R 352 (542)
T ss_dssp H
T ss_pred h
Confidence 3
No 66
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=91.87 E-value=0.1 Score=54.91 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=43.5
Q ss_pred cCcEEEeccchhH-HHHHHHHHHHHh-cCcCCcceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHh
Q 047474 193 KADICQLGMDQRK-VNVLAREYCDDI-KRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKK 265 (326)
Q Consensus 193 ~~d~~~~G~DQ~~-~~~lar~~~~k~-~~~~~p~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~k 265 (326)
.+|+.++|.||.. ++....-...-+ +..+-..++.+.++... +| +|||||. +|.|.+.| .++.+|--+..
T Consensus 544 P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~-~G-~KMSKS~-GNvV~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDE-KG-QKMSKSK-GNVVDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp SBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECT-TS-SCCCTTT-TCCCCHHHHHTTTCHHHHHHHHHH
T ss_pred CcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECC-CC-CCCCccC-CCCCCHHHHHHHhCHHHHHHHHHh
Confidence 4789999999963 322221122222 33211135667787777 77 6999998 68887655 67777766655
No 67
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=90.61 E-value=1.2 Score=43.89 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=46.6
Q ss_pred CCCCe--EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecceeeecCC-------CCCCHHH-HHHHHHH
Q 047474 47 KPQPI--CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFAQLNNK-------MGGDLKK-IQTVGRY 112 (326)
Q Consensus 47 ~~~~~--iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a~~~~~-------~~~~~~~-i~~~~~~ 112 (326)
++++. +.|.+ -|+|.+||||+....+ .+.++++ .|++|..+. ++... |+| .|.++.+ .+++...
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~-g~D~~-G~~i~~~a~~~g~~~~~~~~~~~~~ 86 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLT-GTDVH-GQKMAETAAKEGIPAAELARRNSDV 86 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEE-EECCC-SHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeC-CcCcc-cHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34554 33333 4689999999433222 3555554 699887653 33211 111 1223333 2345566
Q ss_pred HHHHHHHcCCCCCceEEEeCCh
Q 047474 113 LIEIWIAVGMRTERVEFLWSSE 134 (326)
Q Consensus 113 ~~~~~~A~G~d~~k~~~~~~Sd 134 (326)
+.+++.++|++++ .++..++
T Consensus 87 ~~~~~~~lgi~~d--~~~~t~~ 106 (524)
T 2x1l_A 87 FQRLQEKLNISFD--RFIRTSD 106 (524)
T ss_dssp HHHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHHcCCcCC--CCeecCC
Confidence 7788899999887 4666665
No 68
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=90.14 E-value=0.17 Score=53.50 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=45.1
Q ss_pred ccCcEEEeccchhHHHHHHHHHHHH---hcCcCCc--ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHH
Q 047474 192 LKADICQLGMDQRKVNVLAREYCDD---IKRKNKP--IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNV 261 (326)
Q Consensus 192 l~~d~~~~G~DQ~~~~~lar~~~~k---~~~~~~p--~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~ 261 (326)
+-+|+.+.|.||... =.+|.++.. .|. .| .++.|.++.+. +| +|||||. +|.|...| .++.+|-
T Consensus 480 ~P~d~~v~G~Dii~~-W~a~~~~~~~~~~g~--~Pfk~v~~hG~vld~-~G-~KMSKSl-GNvIdP~dli~~yGaDalR~ 553 (862)
T 1gax_A 480 YPGDVLVTGYDILFL-WVSRMEVSGYHFMGE--RPFKTVLLHGLVLDE-KG-QKMSKSK-GNVIDPLEMVERYGADALRF 553 (862)
T ss_dssp CSBSCEEEEGGGTTT-THHHHHHHHHHHSSS--CSBSEEEEECCEECT-TS-CBCCTTT-TCCCCHHHHHHHHCHHHHHH
T ss_pred CCceEEecCcccccc-HHHHHHHHHHHhcCC--CcccEEEEeeeEEcC-CC-CCccccC-CCCCCHHHHHHHcChHHHHH
Confidence 357899999999642 234444432 232 24 35667888887 77 6999998 68888765 5666666
Q ss_pred HHHh
Q 047474 262 KIKK 265 (326)
Q Consensus 262 KI~k 265 (326)
-+..
T Consensus 554 ~ll~ 557 (862)
T 1gax_A 554 ALIY 557 (862)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 69
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=89.97 E-value=0.63 Score=48.20 Aligned_cols=82 Identities=9% Similarity=-0.010 Sum_probs=49.8
Q ss_pred eEEEcc-cCCCCccchhhhh-HHH--HHHHHHH-CCCeEEEEEecceeeec-----CCCCCCHHH-HHHHHHHHHHHHHH
Q 047474 51 ICYDGF-EPSGRMHIAQGVM-KAI--SVNKLTS-AGCKVKIWVADWFAQLN-----NKMGGDLKK-IQTVGRYLIEIWIA 119 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~-~~~--~~~~lq~-aG~~v~ilIaD~~a~~~-----~~~~~~~~~-i~~~~~~~~~~~~A 119 (326)
.+.+++ -|+|.+||||..- ... .+.++++ .|++|.++.|..+.=+- .+.|.++.+ ..++...+.+++.+
T Consensus 5 ~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~ 84 (722)
T 1rqg_A 5 MVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQR 84 (722)
T ss_dssp EEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 366666 7889999999543 221 3666666 69998887654332000 011233333 34455667788999
Q ss_pred cCCCCCceEEEeCCh
Q 047474 120 VGMRTERVEFLWSSE 134 (326)
Q Consensus 120 ~G~d~~k~~~~~~Sd 134 (326)
+|++.+. ++..++
T Consensus 85 lgis~D~--~~rT~d 97 (722)
T 1rqg_A 85 AKISFDF--FGRTEL 97 (722)
T ss_dssp HTCCCSE--EEETTS
T ss_pred hCCCCCC--CeeCCC
Confidence 9999885 455443
No 70
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=89.61 E-value=0.18 Score=53.97 Aligned_cols=69 Identities=20% Similarity=0.088 Sum_probs=42.9
Q ss_pred ccCcEEEeccchhH-HHHHHHHHHHH-hcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRK-VNVLAREYCDD-IKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~-~~~lar~~~~k-~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
+.+|+.++|.||.. |+...+-...- ++..+-| ..+++.+|.. +| +|||||. +|.|.+.| .++.+|--+
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~--~G-~KMSKS~-GNvv~p~d~i~~yGaDalR~~l 677 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL--EG-QKMSKSK-GNVLNFIDAIEENGADVVRLYI 677 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE--SS-SCCCTTT-CCCCBHHHHHHTTCHHHHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee--CC-EEccccc-cCCCCHHHHHHHhChHHHHHHH
Confidence 46899999999953 33333222222 2221112 3566777764 66 6999998 68888765 677777666
Q ss_pred H
Q 047474 264 K 264 (326)
Q Consensus 264 ~ 264 (326)
.
T Consensus 678 l 678 (967)
T 1wz2_A 678 M 678 (967)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=89.38 E-value=0.17 Score=53.06 Aligned_cols=69 Identities=20% Similarity=0.088 Sum_probs=42.5
Q ss_pred ccCcEEEeccchhH-HHHHHHHHHHH-hcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHH
Q 047474 192 LKADICQLGMDQRK-VNVLAREYCDD-IKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKI 263 (326)
Q Consensus 192 l~~d~~~~G~DQ~~-~~~lar~~~~k-~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI 263 (326)
+.+|+.++|.||.. |+...+-...- ++..+-| ..+++.+|.. +| +|||||. +|.|.+.| .++.+|--+
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~--~G-~KMSKS~-GNvv~p~dli~~yGaDalR~~l 677 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL--EG-QKMSKSK-GNVLNFIDAIEENGADVVRLYI 677 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE--TT-BCCCTTT-TCCCBHHHHHHHHCHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe--CC-eehhhcC-CCcCCHHHHHHHcChHHHHHHH
Confidence 46899999999954 43433222222 2211112 3566677664 66 6999998 68888765 566666666
Q ss_pred H
Q 047474 264 K 264 (326)
Q Consensus 264 ~ 264 (326)
.
T Consensus 678 l 678 (810)
T 1wkb_A 678 M 678 (810)
T ss_dssp H
T ss_pred H
Confidence 4
No 72
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=88.66 E-value=3.6 Score=40.96 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=40.3
Q ss_pred EEEeccchhHHHHHH-HHHHHHhcCcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHHHHHHHHhc
Q 047474 196 ICQLGMDQRKVNVLA-REYCDDIKRKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAEVNVKIKKA 266 (326)
Q Consensus 196 ~~~~G~DQ~~~~~la-r~~~~k~~~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~i~~KI~kA 266 (326)
+.++|.||..++..- --+...++.. .| .++.+.+|.. +| +|||||. +|.|.+.| .++.+|--+.+.
T Consensus 303 ~~~~G~D~~~fh~~~~~a~l~~~g~~-~p~~v~~hg~v~~--~G-~KMSKS~-GNvv~p~d~i~~~GaDalR~~ll~~ 375 (560)
T 3h99_A 303 YHFIGKDIVYFLSLFWPAMLEGSNFR-KPSNLFVHGYVTV--NG-AKMSKSR-GTFIKASTWLNHFDADSLRYYYTAK 375 (560)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTBC-CCSEEEEECCEEE--TT-EECCTTT-TCCCBHHHHHHHSCHHHHHHHHHHH
T ss_pred EEEeccccchhHHHHHHHHHHhCCCC-CCcEEEEEeEEEe--CC-eeccccC-CCcCCHHHHHHHcCcHHHHHHHHHh
Confidence 788899998743221 1123335543 34 2344566554 66 6999998 68887765 566666666553
No 73
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=87.82 E-value=0.3 Score=48.88 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=42.1
Q ss_pred cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecc-eeee--c--CCCCCCHHH-HHHHHHHHHHHHHHcCCCCCce
Q 047474 57 EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADW-FAQL--N--NKMGGDLKK-IQTVGRYLIEIWIAVGMRTERV 127 (326)
Q Consensus 57 ~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~-~a~~--~--~~~~~~~~~-i~~~~~~~~~~~~A~G~d~~k~ 127 (326)
-|||.+||||+....+ -+.++++ .|++|.+..+.. |..- . .+.|.++++ +.++...+.+++.++|++.+.
T Consensus 28 y~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d~- 106 (560)
T 3h99_A 28 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDN- 106 (560)
T ss_dssp BTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSE-
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCC-
Confidence 5559999999542222 2445444 799987765422 1100 0 001223333 334455667888999999874
Q ss_pred EEEeCC
Q 047474 128 EFLWSS 133 (326)
Q Consensus 128 ~~~~~S 133 (326)
++..+
T Consensus 107 -~~~t~ 111 (560)
T 3h99_A 107 -YHSTH 111 (560)
T ss_dssp -EEESS
T ss_pred -ceeCC
Confidence 44444
No 74
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=86.55 E-value=1.3 Score=46.93 Aligned_cols=42 Identities=7% Similarity=0.169 Sum_probs=29.4
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecce
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWF 92 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~ 92 (326)
.+++|. -|||.+|+||..-.++ .+.++++ .|++|....|-.|
T Consensus 37 ~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 37 VIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp EEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 377776 7899999999543332 3666776 5999877766444
No 75
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=85.35 E-value=0.43 Score=50.59 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=25.4
Q ss_pred ccCcEEEeccch-hHHHHHHHHHHH---HhcC--cCCcc--eeecCcccC
Q 047474 192 LKADICQLGMDQ-RKVNVLAREYCD---DIKR--KNKPI--ILSHHMLPG 233 (326)
Q Consensus 192 l~~d~~~~G~DQ-~~~~~lar~~~~---k~~~--~~~p~--~l~~~~lp~ 233 (326)
+.+|+-++|.|| .-|+-.+|=+.. .++. ...|+ ++++.|+.+
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~ 579 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLA 579 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEE
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEec
Confidence 468999999999 455555554432 2331 11243 566777765
No 76
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=84.68 E-value=0.81 Score=48.48 Aligned_cols=74 Identities=26% Similarity=0.304 Sum_probs=47.6
Q ss_pred cccCcEEEeccch-hHHHHHHHHH---HHHhcCc--CCcc--eeecCccc-------CCCCCC-----------------
Q 047474 191 FLKADICQLGMDQ-RKVNVLAREY---CDDIKRK--NKPI--ILSHHMLP-------GLQQGQ----------------- 238 (326)
Q Consensus 191 ~l~~d~~~~G~DQ-~~~~~lar~~---~~k~~~~--~~p~--~l~~~~lp-------~L~~g~----------------- 238 (326)
.+.+|+-++|.|| .-|+..+|-+ +..++.. ..|+ ++++.||. .. +|.
T Consensus 541 ~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~-~G~~~~~~~~~v~~~~~~~~ 619 (880)
T 4arc_A 541 WLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGE-NGERNWVSPVDAIVERDEKG 619 (880)
T ss_dssp HCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECT-TSCEEEECSTTCEEEECTTC
T ss_pred cCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceecccc-CCcccccCHHHhcccccccc
Confidence 3568999999999 4677777744 3333421 1353 46667774 22 342
Q ss_pred ------------------ccccCCCCCCceecCC-----CHHHHHHHHHhc
Q 047474 239 ------------------EKMSKSDPSSAIYMED-----EEAEVNVKIKKA 266 (326)
Q Consensus 239 ------------------~KMSKS~~~s~I~L~D-----~~~~i~~KI~kA 266 (326)
+|||||. +|.|...| .++.+|--++.+
T Consensus 620 ~~~~~~~~~G~~v~~~~~eKMSKSk-GNvVdP~diIekYGADalRl~ll~~ 669 (880)
T 4arc_A 620 RIVKAKDAAGHELVYTGMSKMSKSK-NNGIDPQVMVERYGADTVRLFMMFA 669 (880)
T ss_dssp CEEEEECTTCCBCEEEEEEECCTTT-TCCCCHHHHHHHHCHHHHHHHHHHS
T ss_pred ccccccccCCccccccccccccCcC-CCCCCHHHHHHHcCchHHHHHHHhc
Confidence 1999998 68887765 567777666654
No 77
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=82.40 E-value=2.5 Score=44.71 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=43.7
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEec-ceeeec----CCCCCCHH-HHHHHHHHHHHHHHHc
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVAD-WFAQLN----NKMGGDLK-KIQTVGRYLIEIWIAV 120 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD-~~a~~~----~~~~~~~~-~i~~~~~~~~~~~~A~ 120 (326)
.+++++ -|||.+||||.....+ .+.++++ .|++|....+= .|..-- .+.+.++. -..++...+.++++++
T Consensus 56 ~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~L 135 (880)
T 4arc_A 56 YCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKML 135 (880)
T ss_dssp EEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 366676 7889999999543332 3566665 69988665432 221100 00122222 2234556677889999
Q ss_pred CCCCC
Q 047474 121 GMRTE 125 (326)
Q Consensus 121 G~d~~ 125 (326)
|+..+
T Consensus 136 Gis~D 140 (880)
T 4arc_A 136 GFGYD 140 (880)
T ss_dssp TCCCC
T ss_pred CCCcC
Confidence 98887
No 78
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=77.24 E-value=2.9 Score=44.26 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=43.0
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecceeeecCC-------CCCCH-HHHHHHHHHHHHHHH
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWFAQLNNK-------MGGDL-KKIQTVGRYLIEIWI 118 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~a~~~~~-------~~~~~-~~i~~~~~~~~~~~~ 118 (326)
.+.+|+ -|+|.+||||.....+ .+.++++ .|++|....| |+.. |.| .|.++ +-..++...+.+++.
T Consensus 36 ~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G-~D~~-Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 36 YVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMG-WDAF-GLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCC-BCCS-SHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecc-cCcc-cHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 467774 6779999999543322 3555555 5988865433 3321 111 12232 223445566778899
Q ss_pred HcCCCCC
Q 047474 119 AVGMRTE 125 (326)
Q Consensus 119 A~G~d~~ 125 (326)
++|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998776
No 79
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=72.83 E-value=1.4 Score=45.64 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=41.1
Q ss_pred EEEeccchhHHHHHH--HHHHHHhc---------CcCCc-ceeecCcccCCCCCCccccCCCCCCceecCC-----CHHH
Q 047474 196 ICQLGMDQRKVNVLA--REYCDDIK---------RKNKP-IILSHHMLPGLQQGQEKMSKSDPSSAIYMED-----EEAE 258 (326)
Q Consensus 196 ~~~~G~DQ~~~~~la--r~~~~k~~---------~~~~p-~~l~~~~lp~L~~g~~KMSKS~~~s~I~L~D-----~~~~ 258 (326)
+.++|.|+..++.+- ..+ .-.+ ....| .++++.+|.. +| +|||||. +|.|+..| .++.
T Consensus 292 ~h~~GkDii~fH~~~wpA~l-~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~--~G-~KMSKS~-GNvV~p~d~i~~ygaDa 366 (722)
T 1rqg_A 292 IHFIGKDNIPFHAIFWPAFL-MAYGKYKDEEVEAEWNLPYDIPANEYLTL--EG-KKFSTSR-NWAIWVHEFLDVFPADY 366 (722)
T ss_dssp EEEEEGGGHHHHHTHHHHHH-HTTCCBCSSSCCBCBCCCSBCCEECCEEE--TT-EECBTTT-TBSCBHHHHTTTSCHHH
T ss_pred EEEccccccccchhhhHHHH-hccCCCcccccccCCCCCCEEEEeeeEEe--CC-eeeeeeC-CCcCCHHHHHHhcCchH
Confidence 678899997665431 122 1112 11123 3455666664 66 6999998 68888655 6788
Q ss_pred HHHHHHhc
Q 047474 259 VNVKIKKA 266 (326)
Q Consensus 259 i~~KI~kA 266 (326)
+|--+..+
T Consensus 367 lR~~ll~~ 374 (722)
T 1rqg_A 367 LRYYLTTI 374 (722)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88777664
No 80
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=70.83 E-value=3.9 Score=43.69 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=29.0
Q ss_pred CCeEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEecce
Q 047474 49 QPICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVADWF 92 (326)
Q Consensus 49 ~~~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD~~ 92 (326)
+..++.|+ -|||.+|+||..-.++ .+.++++ .|++|... .+|+
T Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~-~GwD 81 (967)
T 1wz2_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP-MAWH 81 (967)
T ss_dssp CCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCC-CCBB
T ss_pred cEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCC-CcCC
Confidence 44588888 8899999999544332 3666666 58887543 4444
No 81
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=68.80 E-value=2.3 Score=44.63 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=28.5
Q ss_pred CeEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEec
Q 047474 50 PICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVAD 90 (326)
Q Consensus 50 ~~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIaD 90 (326)
..++.|. -|||.+||||..-..+ .+.++++ .|++|....|-
T Consensus 40 f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~ 84 (821)
T 1ile_A 40 YTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84 (821)
T ss_dssp CCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEE
T ss_pred EEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccc
Confidence 3488888 8999999999543332 3566665 69988766543
No 82
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=64.97 E-value=3 Score=44.36 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=27.8
Q ss_pred eEEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEEe
Q 047474 51 ICYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWVA 89 (326)
Q Consensus 51 ~iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilIa 89 (326)
.+..|. -|||.+||||.+-.++ .+.++++ .|++|....|
T Consensus 51 ~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~G 93 (917)
T 1ffy_A 51 ILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPG 93 (917)
T ss_dssp CEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCE
T ss_pred eeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 477888 8899999999554433 3666776 5888765544
No 83
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=58.64 E-value=4.3 Score=42.40 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=24.9
Q ss_pred EEEcc-cCCCCccchhhhhHHH--HHHHHHH-CCCeEEEEE
Q 047474 52 CYDGF-EPSGRMHIAQGVMKAI--SVNKLTS-AGCKVKIWV 88 (326)
Q Consensus 52 iy~G~-~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~ilI 88 (326)
+..|. -|||.+||||+.-..+ -+.++++ .|++|....
T Consensus 38 i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~ 78 (810)
T 1wkb_A 38 ITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPM 78 (810)
T ss_dssp EEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCC
T ss_pred EEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCC
Confidence 66666 7889999999543332 3555655 598886654
No 84
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=58.59 E-value=9 Score=37.42 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=26.3
Q ss_pred EEEcccCCCCccchhhhhHHH--HHHHHHH-CCCeEE--EEEeccee
Q 047474 52 CYDGFEPSGRMHIAQGVMKAI--SVNKLTS-AGCKVK--IWVADWFA 93 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~~~~~~--~~~~lq~-aG~~v~--ilIaD~~a 93 (326)
=|+.--|||.+|+||+-...+ .+.++.+ +|++|+ ..|+||=.
T Consensus 35 E~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 35 EYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp ECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred EeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 356778999999999321111 3455544 799874 35666533
No 85
>4ac1_X Endo-N-acetyl-beta-D-glucosaminidase; hydrolase, glycoside hydrolase family 18, deglycosylation; HET: NAG; 1.30A {Hypocrea jecorina}
Probab=30.02 E-value=2.1e+02 Score=25.49 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=45.5
Q ss_pred EEEcccCCCCccchhh--------hhHHHHHHHHHHCCCeEEEEEecceeee-cCC--CCCCHHHHHHHHHHHHHHHHHc
Q 047474 52 CYDGFEPSGRMHIAQG--------VMKAISVNKLTSAGCKVKIWVADWFAQL-NNK--MGGDLKKIQTVGRYLIEIWIAV 120 (326)
Q Consensus 52 iy~G~~PTG~lHLG~~--------~~~~~~~~~lq~aG~~v~ilIaD~~a~~-~~~--~~~~~~~i~~~~~~~~~~~~A~ 120 (326)
.+..+.|.|.+|+... -+.. .+..+|..|.+|.+-|++|..-. ..- ...+.+............+...
T Consensus 39 af~~~~~~g~i~~~d~~p~~~~~~~l~~-~i~~~q~~g~KvllsiGG~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 117 (283)
T 4ac1_X 39 CSFHINQGGVVHLNDFPPDDPHFYTLWN-ETITMKQAGVKVMGMVGGAAPGSFNTQTLDSPDSATFEHYYGQLRDAIVNF 117 (283)
T ss_dssp EEEECCTTSCCEETTBCTTSGGGHHHHH-HHHHHHHTTCEEEEEEETTSSCSSSTTTTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCeEEECCCCccchHHHHHHH-HHHHHHcCCCEEEEEEcCCCCCCCcccccccccHHHHHHHHHHHHHHHHHc
Confidence 5678889999998621 1111 36678889999999999995211 100 0123333333334455667777
Q ss_pred CCCCCceEEEe
Q 047474 121 GMRTERVEFLW 131 (326)
Q Consensus 121 G~d~~k~~~~~ 131 (326)
|||- +-|=+
T Consensus 118 ~~dG--~D~d~ 126 (283)
T 4ac1_X 118 QLEG--MDLDV 126 (283)
T ss_dssp TCSE--EEEEC
T ss_pred CCCc--eEeec
Confidence 7763 44444
No 86
>3mlg_A Putative uncharacterized protein, linker, putativ uncharacterized protein; knot, designed protein, fusion protein, chimera protein; 2.29A {Helicobacter pylori}
Probab=26.42 E-value=16 Score=31.34 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=27.6
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHhhcccccCHHHHHHHHhc
Q 047474 3 INSQNDEGSSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTK 46 (326)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~ 46 (326)
|=|||+.||.+.. |+.+||--|..+...-+...||+++|++
T Consensus 89 ILs~~~~~~~~~g---sP~eKw~eIi~hAn~~lv~~ELEkller 129 (189)
T 3mlg_A 89 ILSGSGSGSGSSG---NPLDKWNDIIFHASKKLSKKELERLLEL 129 (189)
T ss_dssp HHHC--------C---HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHccCCCCCCCCC---ChHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 4578999987776 8899999999887777778999999984
No 87
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=23.41 E-value=78 Score=28.34 Aligned_cols=91 Identities=14% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHhhccc---cc------CHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEE
Q 047474 17 QMSVEEKFRLVRSIGEE---CI------QEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIW 87 (326)
Q Consensus 17 ~~~~~~~~~li~r~~~e---~~------~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~il 87 (326)
..++|...++++..... .+ ..+|++.+-+.-.+.-+ ++||||-+.+-|+- .. +.-..++|++-+|-
T Consensus 167 ~V~vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~--~lEPTGGIdl~Nf~-~I--~~i~l~aGv~~viP 241 (275)
T 3m6y_A 167 IVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGF--ALEPTGGIDKENFE-TI--VRIALEANVEQVIP 241 (275)
T ss_dssp EEEHHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTC--EEEEBSSCCTTTHH-HH--HHHHHHTTCSCBCC
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc--eECCCCCccHhHHH-HH--HHHHHHcCCCeecc
Confidence 35689999999965332 22 35777776654111112 89999999999943 21 44466899875544
Q ss_pred Eec-ceeeecCCCCCC-HHHHHHHHHHHH
Q 047474 88 VAD-WFAQLNNKMGGD-LKKIQTVGRYLI 114 (326)
Q Consensus 88 IaD-~~a~~~~~~~~~-~~~i~~~~~~~~ 114 (326)
- +.++++..+|.+ ++++++.-..++
T Consensus 242 --HIYsSIIDk~TG~TrpedV~~ll~~~K 268 (275)
T 3m6y_A 242 --HVYSSIIDKETGNTKVEAVRELLAVVK 268 (275)
T ss_dssp --EECGGGBCTTTCCBCHHHHHHHHHHHH
T ss_pred --cccceeccCCCCCCCHHHHHHHHHHHH
Confidence 1 133444434443 667666554443
No 88
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.14 E-value=3.7e+02 Score=23.85 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEEe
Q 047474 10 GSSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVA 89 (326)
Q Consensus 10 ~~~~~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilIa 89 (326)
|+..+..+||.+||.+++..-.+.+ +++..++.|+.- ......+ . ..++.+++|++.+.++.
T Consensus 49 GttGE~~~Ls~~Er~~v~~~~~~~~------------~grvpviaGvg~---~~t~~ai-~--la~~a~~~Gadavlv~~ 110 (297)
T 3flu_A 49 GTTGESATLSVEEHTAVIEAVVKHV------------AKRVPVIAGTGA---NNTVEAI-A--LSQAAEKAGADYTLSVV 110 (297)
T ss_dssp STTTTGGGSCHHHHHHHHHHHHHHH------------TTSSCEEEECCC---SSHHHHH-H--HHHHHHHTTCSEEEEEC
T ss_pred ccccCcccCCHHHHHHHHHHHHHHh------------CCCCcEEEeCCC---cCHHHHH-H--HHHHHHHcCCCEEEECC
Confidence 3444455566666666665433211 233346667532 2233321 2 25567789999888876
Q ss_pred cceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 047474 90 DWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLW 131 (326)
Q Consensus 90 D~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~ 131 (326)
-.. ..+ +.+.+ ..++.+...+.+++ +.+++
T Consensus 111 P~y---~~~---~~~~l---~~~f~~va~a~~lP---iilYn 140 (297)
T 3flu_A 111 PYY---NKP---SQEGI---YQHFKTIAEATSIP---MIIYN 140 (297)
T ss_dssp CCS---SCC---CHHHH---HHHHHHHHHHCCSC---EEEEE
T ss_pred CCC---CCC---CHHHH---HHHHHHHHHhCCCC---EEEEE
Confidence 543 222 44443 44566666777664 44444
No 89
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.73 E-value=3.9e+02 Score=23.80 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=51.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhcccccCHHHHHHHHhcCC-CCeEEEcccCCCCccchhhhhHHHHHHHHHHCCCeEEEEE
Q 047474 10 GSSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKP-QPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWV 88 (326)
Q Consensus 10 ~~~~~~~~~~~~~~~~li~r~~~e~~~~~eL~~lL~~~~-~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~~v~ilI 88 (326)
|+..+...||.|||.+++..-.+.+ ++ +..++.|.. .......+ . ..++.+++|++.+.++
T Consensus 49 GttGE~~~Ls~~Er~~v~~~~~~~~------------~g~rvpviaGvg---~~~t~~ai-~--la~~a~~~Gadavlv~ 110 (301)
T 3m5v_A 49 GTTGESATLTHEEHRTCIEIAVETC------------KGTKVKVLAGAG---SNATHEAV-G--LAKFAKEHGADGILSV 110 (301)
T ss_dssp STTTTGGGSCHHHHHHHHHHHHHHH------------TTSSCEEEEECC---CSSHHHHH-H--HHHHHHHTTCSEEEEE
T ss_pred ccccChhhCCHHHHHHHHHHHHHHh------------CCCCCeEEEeCC---CCCHHHHH-H--HHHHHHHcCCCEEEEc
Confidence 4555556677777777776443221 23 334677753 33333322 2 2566778999988887
Q ss_pred ecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 047474 89 ADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLW 131 (326)
Q Consensus 89 aD~~a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~d~~k~~~~~ 131 (326)
.-.+. .+ +.+. ...++.+...+.+++ +.+++
T Consensus 111 ~P~y~---~~---s~~~---l~~~f~~va~a~~lP---iilYn 141 (301)
T 3m5v_A 111 APYYN---KP---TQQG---LYEHYKAIAQSVDIP---VLLYN 141 (301)
T ss_dssp CCCSS---CC---CHHH---HHHHHHHHHHHCSSC---EEEEE
T ss_pred CCCCC---CC---CHHH---HHHHHHHHHHhCCCC---EEEEe
Confidence 66542 22 4443 344555666676664 44444
No 90
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=20.55 E-value=4.5e+02 Score=23.34 Aligned_cols=100 Identities=16% Similarity=0.122 Sum_probs=58.0
Q ss_pred HHHHhcCCCCeEEEcccCCCCccchhhhhHHHHHHHHHHCCC-eEEEEEecceeeecC-CCCCCHHHHHH----HH----
Q 047474 41 LNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGC-KVKIWVADWFAQLNN-KMGGDLKKIQT----VG---- 110 (326)
Q Consensus 41 ~~lL~~~~~~~iy~G~~PTG~lHLG~~~~~~~~~~~lq~aG~-~v~ilIaD~~a~~~~-~~~~~~~~i~~----~~---- 110 (326)
+.+++++ ..++.|+-|=-+-|=+..+-.+ +.|.+. ++ +|.|+++|.++.-+- -.|.+..+.++ .+
T Consensus 23 ~~I~~~g--~HallGISpgNsyFs~d~L~~L--i~Wa~~-~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r 97 (257)
T 3oqi_A 23 NEILKRR--RHVLVGISPFNSRFSEDYIHRL--IAWAVR-EFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNR 97 (257)
T ss_dssp HHHHHHT--CEEEEEECTTSTTCCHHHHHHH--HHHHHH-HCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC--CeEEEEeCCCCcccCHHHHHHH--HHHHHc-cCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 4455543 4699999998887766644332 333333 33 799999997654221 03455543322 22
Q ss_pred HHHHHHHHHcCCCCCceEEEeCChhHHhhhhhhHHHHHH
Q 047474 111 RYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMD 149 (326)
Q Consensus 111 ~~~~~~~~A~G~d~~k~~~~~~Sd~~~~~~~~~~~~~~~ 149 (326)
+.....+.++|.+.+ .++.=|| +..+ ..|-.+..+
T Consensus 98 ~~i~ral~~~g~~~~--~v~~~Sd-~~~~-~~Y~~l~~~ 132 (257)
T 3oqi_A 98 RFAEKALEAHGGNPE--DIHTFSD-FANQ-TAYRNLRME 132 (257)
T ss_dssp HHHHHHHHHHTCCTT--CEEETTT-TTTC-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCcc--cceeHHH-hhcC-HHHHHHHHH
Confidence 233456777898877 5676688 5333 445444433
No 91
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus}
Probab=20.46 E-value=2.4e+02 Score=24.97 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=45.8
Q ss_pred EEEcccCC-CCccchhh------hhH-HHHHHHHHHCCCeEEEEEecce-eeecCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 047474 52 CYDGFEPS-GRMHIAQG------VMK-AISVNKLTSAGCKVKIWVADWF-AQLNNKMGGDLKKIQTVGRYLIEIWIAVGM 122 (326)
Q Consensus 52 iy~G~~PT-G~lHLG~~------~~~-~~~~~~lq~aG~~v~ilIaD~~-a~~~~~~~~~~~~i~~~~~~~~~~~~A~G~ 122 (326)
.+.++.++ |.+++... ... .-.+..+|+.|.+|.+.|++|. +-... ...+.+..++.++..+..++..|+
T Consensus 48 af~~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~~k~~g~kvllSiGG~~~~~fs~-~~~~~~~r~~f~~s~~~~~~~~~~ 126 (290)
T 2y8v_A 48 AAFHLNEDPGHITLNDDPPDHEMYNPLWAEVPVLKRSGVKVMGMLGGAAQGSYRC-LDGDQEKFERYYQPLLAMVRRHQL 126 (290)
T ss_dssp EEEEECSSTTCEEETTBCTTSGGGHHHHHHHHHHHHTTCEEEEEEECSSTTTTGG-GSSCHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEecCCCCceeecCCCcccchHHHHHHHHHHHHHCCCEEEEEECCCCCCCchh-ccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45566665 56666531 001 1146668888999999999985 11110 113455555566666777777787
Q ss_pred CCCceEEEeC
Q 047474 123 RTERVEFLWS 132 (326)
Q Consensus 123 d~~k~~~~~~ 132 (326)
|- +-|-+.
T Consensus 127 DG--iDiDwE 134 (290)
T 2y8v_A 127 DG--LDLDVE 134 (290)
T ss_dssp SE--EEEECC
T ss_pred Ce--EEEccc
Confidence 64 555544
No 92
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=20.41 E-value=64 Score=19.53 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=16.2
Q ss_pred CCCCCcHHHHHHHhccCCC
Q 047474 272 IVEGNPCLEYIKYIIFPWD 290 (326)
Q Consensus 272 ~~~~n~vl~~~~~~ifp~~ 290 (326)
-.++|||..+++.|+-|..
T Consensus 6 ~~ddnpvvhffknivsprt 24 (36)
T 2lug_A 6 TQDENPVVHFFKNIVTPRT 24 (36)
T ss_dssp SCCCCHHHHHHHHHHCSSC
T ss_pred ccCCCchhHhhhhccCCCC
Confidence 3588999999999998865
Done!