RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 047474
(326 letters)
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 544 bits (1403), Expect = 0.0
Identities = 207/308 (67%), Positives = 236/308 (76%), Gaps = 2/308 (0%)
Query: 8 DEGSSTSTPQM--SVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIA 65
+ G S PQ S+EE+ +L SIGEECIQ +EL LL K +PICYDGFEPSGRMHIA
Sbjct: 23 ETGFRGSPPQSKLSLEERVKLCLSIGEECIQPEELRELLKLKERPICYDGFEPSGRMHIA 82
Query: 66 QGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTE 125
QG++KAI+VNKLT AGC WVADWFA LNNKMGGDL+KI+ VG Y IE+W A GM +
Sbjct: 83 QGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMD 142
Query: 126 RVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQ 185
V FLW+SEEIN ++YW VMDIAR + RI RC QIMGRSE DE AQILYPCMQ
Sbjct: 143 NVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQILYPCMQ 202
Query: 186 CADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSD 245
CADIF+LKADICQLGMDQRKVN+LAREYCD K K KPIILSHHMLPGL +GQEKMSKSD
Sbjct: 203 CADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSD 262
Query: 246 PSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNK 305
P+SAI+MED E +VN KIKKAYCPP ++EGNP L Y K I+FP F V R E NGG+
Sbjct: 263 PNSAIFMEDSEEDVNRKIKKAYCPPGVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDV 322
Query: 306 TFETMKNL 313
T+ T + L
Sbjct: 323 TYTTYEEL 330
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 428 bits (1103), Expect = e-147
Identities = 175/285 (61%), Positives = 218/285 (76%), Gaps = 16/285 (5%)
Query: 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKL 77
M+ +E+++L+RS+GEECIQE EL NL+ KKP CYDGFEPSGRMHIAQG+ KA++VNK
Sbjct: 1 MNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKC 60
Query: 78 TSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEIN 137
T AGC+ WVADWFA +N+K+GG+L+KI+ VGRYLIE+W A GM ++V FLWSSEEI
Sbjct: 61 TQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEIT 120
Query: 138 ARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADIC 197
A+ YW V+DI R+N + RI +CC IMG++E LTAAQ+LYP MQCADIFFLKADIC
Sbjct: 121 NHANTYWRTVLDIGRQNTIARIKKCCTIMGKTE-GTLTAAQVLYPLMQCADIFFLKADIC 179
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEA 257
QLG+DQRKVN+LAREYCD I RK KP+ILSHHML GL+QGQ KMSKSDP SAI+MED E
Sbjct: 180 QLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEE 239
Query: 258 EVNVKIKKAYCP--------------PKIVEG-NPCLEYIKYIIF 287
+V KI++AYCP P + NP L+Y + +++
Sbjct: 240 DVARKIRQAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVY 284
Score = 74.6 bits (183), Expect = 9e-15
Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 12/252 (4%)
Query: 62 MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVG 121
+ +A+G++ A + V + + DW A ++++ G+ K I + A G
Sbjct: 388 LDVAEGMIDATKDFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYG 447
Query: 122 MRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILY 181
+ +E V+ + +E I +++W V+ IAR+N L + + A Q++
Sbjct: 448 LPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVEELYG------GELRNAGQVIA 500
Query: 182 PCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKM 241
M+ A L A +N AREY + + I +P L +
Sbjct: 501 ALMRVATALMLSASHVISTSLDGGINEFAREYTKG---RIECIQALEGRVPALHRPGAAP 557
Query: 242 SKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEAN 301
+ +Y++D + ++ KIKKAY P E NP + ++++ +ER EAN
Sbjct: 558 AVLGADDVLYLDDNDMDIRRKIKKAYSAPN-EEANPVISVAQHLLAQ-QGALSIERGEAN 615
Query: 302 GGNKTFETMKNL 313
GGN + T + L
Sbjct: 616 GGNVAYNTPEAL 627
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 296 bits (760), Expect = 1e-99
Identities = 127/294 (43%), Positives = 177/294 (60%), Gaps = 7/294 (2%)
Query: 20 VEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTS 79
+EE+ L+ EE + E+EL LL K +P Y GFEPSG++H+ ++ + L
Sbjct: 1 IEERLELITRNTEEVVTEEELRELLESKEEPKAYIGFEPSGKIHLG-HLLTMNKLADLQK 59
Query: 80 AGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINAR 139
AG KV + +ADW A LN+K GDL++I+ V Y +++ A+G+ ++ EF+ SE
Sbjct: 60 AGFKVTVLLADWHAYLNDK--GDLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEF--QL 115
Query: 140 ADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQL 199
EYW LV+ +A+ L R R IMGR +E ++++YP MQ ADIF+L DI
Sbjct: 116 DKEYWLLVLKLAKNTTLARARRSMTIMGRRM-EEPDVSKLVYPLMQVADIFYLDVDIAVG 174
Query: 200 GMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEV 259
GMDQRK+++LARE + K KP+ + +L GL G KMSKS P SAI++ D E+
Sbjct: 175 GMDQRKIHMLAREVLPKLGYK-KPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEI 233
Query: 260 NVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
KIKKAYCPP VEGNP LE KY IFP FV+ER E GG+ +E+ + L
Sbjct: 234 RRKIKKAYCPPGEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEEL 287
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 205 bits (523), Expect = 1e-64
Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 17/276 (6%)
Query: 45 TKKPQPICYDGFEPSGRMHIAQ-GVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDL 103
K+ Y GF+P+G +H+ + + + AG +V + D A + + +
Sbjct: 1 KKERPLRVYTGFDPTGPLHLGYLVPLMKL--VQFQQAGHEVFFLIGDLTAIIGDPSKSEE 58
Query: 104 KKIQTVGRYL--IEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMR 161
+K+ + L + +A G+ E+ E + +S+ + E L+ D+ L R+++
Sbjct: 59 RKLLSREEVLENAKAQLACGLDPEKSEIVNNSDWLEHL--ELAWLLRDLGNHFSLNRMLQ 116
Query: 162 CCQIMGR-SEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK 220
+ R + ++ + YP +Q ADI LKAD+ G DQ L R+ +K
Sbjct: 117 FKDVKKRLKQNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKK 176
Query: 221 --NKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPC 278
KP+ L++ +L GL G +KMSKS +SAI+++DE+ V KI+KAY P
Sbjct: 177 VFKKPVGLTNPLLTGL-DGGKKMSKSAGNSAIFLDDEKESVYKKIQKAYTDPD--REVRK 233
Query: 279 LEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLL 314
+ + +E EA G + LL
Sbjct: 234 DLKLFTELSN----EEIEILEAFLGKGPKREAEELL 265
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 138 bits (350), Expect = 8e-38
Identities = 64/331 (19%), Positives = 124/331 (37%), Gaps = 49/331 (14%)
Query: 17 QMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVN 75
M VE + R + E+ E+EL LL + P + Y GF+P+ +H+ + +
Sbjct: 1 MMDVELLELIKRGLIEQITDEEELRKLLEEGPLRV-YIGFDPTAPSLHLGH----LVPLM 55
Query: 76 KL---TSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWI-----AVGMR-TER 126
KL AG K + + D A + + G ++ + + R + +G +
Sbjct: 56 KLRRFQDAGHKPIVLIGDATAMIGDPSG-KSEERKLLTRETVLENAETIKKQLGKFLDNK 114
Query: 127 VEFLWSSE---EINARADEYWPLVMDIARRNKLPRIMRCCQIMGR-SEQDELTAAQILYP 182
EF+ +S+ ++N Y + D+ + + R++R + R + ++ + YP
Sbjct: 115 AEFVNNSDWLKKLN-----YLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYP 169
Query: 183 CMQCADIFFLKADICQL-GMDQRKVNVLAREYCDDIKRKN--KPIILSHHMLPGLQ---- 235
+Q D +L D+ QL G DQ + R+ I+R K + L+ +L GL
Sbjct: 170 LLQAYDFVYLNKDL-QLGGSDQWGNILAGRDL---IRRLGQKKVVGLTTPLLTGLDGKKM 225
Query: 236 ---QGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKI-VEGNPCLEYIKYIIFPWDK 291
+G S+ +S + K + + E KY++ +
Sbjct: 226 GKSEGGAVWLDSEKTSPYDFYQYWMNIEDADVKRFLKLLTFLSLEEIEEIEKYVLKGPEP 285
Query: 292 KFV------VERSEANGG---NKTFETMKNL 313
+ +G E + L
Sbjct: 286 REAKKLLAKEVTKLVHGEEAAEAAEEEFEKL 316
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 118 bits (299), Expect = 2e-31
Identities = 60/255 (23%), Positives = 117/255 (45%), Gaps = 30/255 (11%)
Query: 53 YDGFEPSG-RMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMG-------GDLK 104
Y GF+P+ +H+ V + + AG +V + + D A + + G DL+
Sbjct: 4 YIGFDPTAPSLHLGHLVP-LMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLE 62
Query: 105 KIQTVGRYLIEIWIAVG--MRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRC 162
I+ +Y + A+ + E+ +F+ +S+ + Y + + + + R++R
Sbjct: 63 LIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLL---SLYTLDFLRLGKHFTVNRMLRR 119
Query: 163 CQIMGRSEQDE-LTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKR-- 219
+ R E++E ++ ++ +YP +Q D +L D+ G DQR L R+ I++
Sbjct: 120 DAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDL---IRKLG 176
Query: 220 KNKPIILSHHMLPGLQQGQEKMSKSDPSSA-IYMEDEEAEVNVKIKKAYCPPKIVEGNPC 278
K + L+ +L GL G KMSKS+ ++ + D +V KI+ A+ P
Sbjct: 177 YKKVVGLTTPLLTGLDGG--KMSKSEGNAIWDPVLDSPYDVYQKIRNAFDP-------DV 227
Query: 279 LEYIKYIIFPWDKKF 293
LE++K F ++
Sbjct: 228 LEFLKLFTFLDYEEI 242
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 96.9 bits (242), Expect = 3e-23
Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 35/284 (12%)
Query: 53 YDGFEPSGRMHIAQ--GVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVG 110
G +PSG +H+ G + L AG ++ ++AD A ++ + +
Sbjct: 3 LSGIQPSGSLHLGHYLGAFRFWV--WLQEAGYELFFFIADLHALTVKQL-----DPEELR 55
Query: 111 RYLIEI---WIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQI-M 166
+ E ++A G+ E+ + S+ + + W L + + R
Sbjct: 56 QNTRENAKDYLACGLDPEKSTIFFQSD-VPEHYELAWLLSCVVT----FGELERMTGFKD 110
Query: 167 GRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNV-LAREYCDDIKRKN---- 221
++ + + + YP +Q ADI KA + +G+DQ ++ L R+ +
Sbjct: 111 KSAQGESVNIGLLTYPVLQAADILLYKACLVPVGIDQ-DPHLELTRDIARRFNKLYGEIF 169
Query: 222 -KPIILSHHM--LPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPP-----KIV 273
KP L LPGLQ +KMSKSDP++AI++ D E+ KI KA +
Sbjct: 170 PKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGRTEHRRD 229
Query: 274 EGNP---CLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLL 314
G P L I F D + + E E G + K LL
Sbjct: 230 GGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLL 273
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 84.9 bits (211), Expect = 8e-19
Identities = 62/292 (21%), Positives = 104/292 (35%), Gaps = 45/292 (15%)
Query: 50 PICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVK---------IWVADWFAQLNNKMG 100
G +PSG++H+ N L + V ++AD A + +
Sbjct: 6 FRVLSGIQPSGKLHLG---------NYLGAIRNWVLLQEEYYECFFFIADLHA-ITVRQD 55
Query: 101 GDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIM 160
+ ++ R + ++AVG+ E+ + + E+ L ++ +
Sbjct: 56 PTEEDLRQATREVAADYLAVGLDPEKSTIF-----LQSEVPEHAELAWLLSCVTNFGELE 110
Query: 161 RCCQIMGRSEQDE--LTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIK 218
R Q +S + + + YP +Q ADI +A + +G DQ + L R+
Sbjct: 111 RMTQFKDKSAKKGESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFN 170
Query: 219 RKNK-------PIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYC-PP 270
+I LPGL G KMSKSDP+SAI++ D+ + KIKKA P
Sbjct: 171 HLYGEVFPLPEALISKVARLPGLD-GPGKMSKSDPNSAIFLLDDPKTIRKKIKKAATDGP 229
Query: 271 KIV--------EGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLL 314
++ E E + GG K L
Sbjct: 230 TLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYR--GGELGCGECKKEL 279
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 84.3 bits (209), Expect = 2e-18
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 14/221 (6%)
Query: 53 YDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY 112
G +PSG+MH+ + AI L G ++ I +AD A + D +
Sbjct: 6 LTGIQPSGKMHLGH-YLGAIQTKWLQQFGVELFICIADLHAITVKQTDPDALRKAR--EE 62
Query: 113 LIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQD 172
L ++AVG+ E+ S+ E++ L ++ + + R Q +S+ +
Sbjct: 63 LAADYLAVGLDPEKTFIFLQSD-----YPEHYELAWLLSCQVTFGELKRMTQFKDKSQAE 117
Query: 173 ELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNK-----PIILS 227
+ + YP +Q ADI +AD+ +G+DQ + L R+ + +K K P L
Sbjct: 118 NVPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKFKNFFPKPESLI 177
Query: 228 HHMLPGLQQGQ-EKMSKSDPSSAIYMEDEEAEVNVKIKKAY 267
P L +KMSKSDP+SAI++ D ++ KI+KA
Sbjct: 178 SKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRKAA 218
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 75.3 bits (186), Expect = 3e-15
Identities = 65/232 (28%), Positives = 95/232 (40%), Gaps = 40/232 (17%)
Query: 53 YDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY 112
Y GF PSG MHI M + G V I +AD A + ++ +
Sbjct: 70 YTGFMPSGPMHIGH-KMVFDELKWHQEFGANVYIPIADDEAYAARGL--SWEETREWAYE 126
Query: 113 LIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQD 172
I IA+G ++ E + SE I + + L ++A++ ++ I G + +
Sbjct: 127 YILDLIALGFDPDKTEIYFQSENI-----KVYDLAFELAKKVNFSE-LKA--IYGFTGET 178
Query: 173 ELTAAQILYPCMQCADIFFLKAD------ICQLGMDQ----RKVNVLAREYCDDIKRK-- 220
+ I YP Q ADI + + + +G+DQ R L R DI +
Sbjct: 179 NI--GHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIR----LTR----DIAERLH 228
Query: 221 -----NKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAY 267
KP H +PGL G KMS S P SAIY+ D+ V KI KA
Sbjct: 229 GGYGFIKPSSTYHKFMPGLTGG--KMSSSKPESAIYLTDDPETVKKKIMKAL 278
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 75.5 bits (186), Expect = 3e-15
Identities = 64/297 (21%), Positives = 113/297 (38%), Gaps = 56/297 (18%)
Query: 32 EECIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNKLT---SAGCKVKIW 87
+ +E+ELL LL +K Y GF+P+ +H+ + + KL AG +V +
Sbjct: 15 VQVPEEEELLKLLERKI--KLYVGFDPTAPSLHLGH----LVPLLKLRDFQQAGHEVIVL 68
Query: 88 VADWFAQLNNKMGGD-LKKI---QTVGR--YLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ D A + + G +K+ + V I+ IA + E+ +F+ +SE +
Sbjct: 69 LGDATALIGDPSGKSEERKLLTREEVQENAENIKKQIARFLDFEKAKFVNNSEWLLKL-- 126
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
Y + D+ + + R++R R + ++ ++ +YP +Q D +L D+ G
Sbjct: 127 NYIDFIRDLGKIFSVNRMLRRDAFSSR-LERGISLSEFIYPLLQAYDFVYLNVDLQIGGS 185
Query: 202 DQ----RKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKS-------DP---S 247
DQ K L R + L+ +L EKM KS D
Sbjct: 186 DQWGNILKGRDLIRRN-----LPSLGFGLTVPLLTPAD--GEKMGKSEGGAVSLDEGKYD 238
Query: 248 SAIYMEDEEAEVNVKIKKAYCP----------------PKIVEGNPCLEYIKYIIFP 288
+ + E KI K + P+ V+ N E KY+
Sbjct: 239 FYQFWINTPDEDVKKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGE 295
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 65.3 bits (160), Expect = 5e-12
Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 181 YPCMQCADIFFLKADICQLGMDQ-----------RKVNVLAREYCDDIKRKNKPIILSHH 229
YP Q ADI KA + +G DQ R+ N L Y D+ + + ++
Sbjct: 130 YPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSL---YGTDVLVEPEALLPEAG 186
Query: 230 MLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPP-KI-------VEGNPCLEY 281
LPGL G+ KMSKS +AIY+ D+ + K+ Y P I VEGN Y
Sbjct: 187 RLPGL-DGKAKMSKSL-GNAIYLSDDADTIKKKVMSMYTDPNHIRVEDPGKVEGNVVFTY 244
Query: 282 IKYIIFPWDKKFVVE 296
+ F DK V E
Sbjct: 245 LD--AFDPDKAEVAE 257
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 57.4 bits (140), Expect = 2e-09
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 24/116 (20%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNV-LAREYCDDIKRK-N----------KPIILSH 228
YP + ADI KAD+ +G DQ K ++ L R DI R+ N +P+I
Sbjct: 126 YPVLMAADILLYKADLVPVGEDQ-KQHLELTR----DIARRFNNLYGEVFPVPEPLIPKV 180
Query: 229 HM-LPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKAYC----PPKIVEGNP 277
+ GL +KMSKSDP+ + I + D+ + KIKKA +I P
Sbjct: 181 GARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERLREIRYDLP 236
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 48.2 bits (115), Expect = 3e-06
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 118 IAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAA 177
IA G ER F++S + + ++ ++ IA+ L ++ I G S +D +
Sbjct: 141 IACGFDVERT-FIFS--DFDYVGGAFYKNMVKIAKCVTLNQVR---GIFGFSGEDNI--G 192
Query: 178 QILYPCMQCA--------DIFFLKADICQL---GMDQRKVNVLAREYCDDIKRKNKPIIL 226
+I +P +Q A +F K + L +DQ + R+ + KP ++
Sbjct: 193 KISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYY-KPALI 251
Query: 227 SHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
P LQ KMS SDP+SAIY+ D E+ KI K
Sbjct: 252 ESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINK 290
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 43.7 bits (103), Expect = 7e-05
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 116 IWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELT 175
I++A G+ + S + A A+ W L+ L ++++ + ++ + +
Sbjct: 109 IYLACGIDPSKASVFVQSH-VPAHAELMW-LLSCSTPIGWLNKMIQFKEKSRKAGDENVG 166
Query: 176 AAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDI-------------KRKNK 222
+ YP + +DI +AD+ +G DQ++ L R+ + + R
Sbjct: 167 VGLLTYPVLMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGS 226
Query: 223 PIILSHHMLP-------GLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKAYCPPKIV 273
+ ++P L G KMSKS PS S I + D + KIK+ C
Sbjct: 227 VFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKR--CKTDSF 284
Query: 274 EGNPCLEYIKYIIFPWDKKFVVERSEAN 301
G LE +D ER E N
Sbjct: 285 PG---LE--------FDN---PERPECN 298
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 31.5 bits (72), Expect = 0.66
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 231 LPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIK 264
+PGL GQ KMSKS + I + ++ V KI+
Sbjct: 257 MPGLD-GQ-KMSKSY-GNTIGLREDPESVTKKIR 287
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 30.5 bits (69), Expect = 1.2
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNVLARE--------YCDDIKRKNKPIILSHHMLP 232
YP + ADI +A +G DQ + +AR+ + D I +LP
Sbjct: 137 YPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILP 196
Query: 233 GLQQGQEKMSKS 244
GL KMSKS
Sbjct: 197 GLD--GRKMSKS 206
>gnl|CDD|226242 COG3719, Rna, Ribonuclease I [Translation, ribosomal structure and
biogenesis].
Length = 249
Score = 28.6 bits (64), Expect = 4.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 91 WFAQLNNKMGGDLKKIQTVGRYLIEIWI 118
F + N + GD ++ G YL E+ I
Sbjct: 188 AFDKANGGLKGDAVRVSCQGNYLTELRI 215
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,304,530
Number of extensions: 1558137
Number of successful extensions: 1205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1166
Number of HSP's successfully gapped: 25
Length of query: 326
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 229
Effective length of database: 6,635,264
Effective search space: 1519475456
Effective search space used: 1519475456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)