RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 047474
(326 letters)
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 409 bits (1052), Expect = e-139
Identities = 177/318 (55%), Positives = 226/318 (71%), Gaps = 22/318 (6%)
Query: 11 SSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMK 70
+ M+ +E+++L+RS+GEECIQE EL NL+ KKP CYDGFEPSGRMHIAQG+ K
Sbjct: 2 AHHHHHHMNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFK 61
Query: 71 AISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFL 130
A++VNK T+AGC+ WVADWFA +N+K+GG+L+KI+ VGRYLIE+W A GM ++V FL
Sbjct: 62 AVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVLFL 121
Query: 131 WSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIF 190
WSSEEI + AD YW +V+DI R+N + RI +CC IMG++E LTAAQ+LYP MQC DIF
Sbjct: 122 WSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE-GTLTAAQVLYPLMQCCDIF 180
Query: 191 FLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI 250
FLKADICQLG+DQRKVN+LAREYCD I RK KP+ILSHHML GL+QGQ KMSKSDP SAI
Sbjct: 181 FLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAI 240
Query: 251 YMEDEEAEVNVKIKKAYCPP---------------KIVEGNPCLEYIKYIIFPWDKKFVV 295
+MED E +V KI++AYCP + NP L+Y + +++
Sbjct: 241 FMEDTEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAAT 300
Query: 296 ERSEANGGNKTFETMKNL 313
T+ T ++L
Sbjct: 301 ------IDGTTYATYEDL 312
Score = 342 bits (879), Expect = e-113
Identities = 62/282 (21%), Positives = 110/282 (39%), Gaps = 12/282 (4%)
Query: 32 EECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADW 91
+ L KP + + +A+G++K V + + DW
Sbjct: 366 ATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDW 425
Query: 92 FAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIA 151
A ++++ G K I + + A G+ V+ + +E I D++W V+ IA
Sbjct: 426 SAVASDEITGVEKDISAALQVNCALLKAYGL-PSSVKIVTENEVILGNCDDFWVSVIGIA 484
Query: 152 RRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAR 211
R+N L + R+ A Q++ M+ A L +N AR
Sbjct: 485 RKNLLSHVEELYGGEVRN------AGQVIAALMRVATALMLSVSHVISTSLDGHINAFAR 538
Query: 212 EYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPK 271
EY K + + +P L + + +Y++D + ++ KIKKAY P
Sbjct: 539 EYT---KERIDCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKKAYSAPN 595
Query: 272 IVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
E NP + ++ + +ER EANGGN ++ T + L
Sbjct: 596 -EEANPVISVAQH-LLAQHGALSIERGEANGGNVSYNTPEAL 635
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 394 bits (1014), Expect = e-138
Identities = 184/307 (59%), Positives = 227/307 (73%)
Query: 7 NDEGSSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQ 66
++ + + V++ + SI ECIQ DEL L K + ICYDGFEPSGRMHIAQ
Sbjct: 14 EEKKAQEESKIEDVDKILNDILSISSECIQPDELRVKLLLKRKLICYDGFEPSGRMHIAQ 73
Query: 67 GVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTER 126
G++K+I VNKLTS GC W+ADWFA LNNKM GDLKKI+ VG Y IE+W + GM E
Sbjct: 74 GLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN 133
Query: 127 VEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQC 186
V+FLW+SEEIN + +EYW LV+DI+R + R+ RC +IMGRSE +E +QILYPCMQC
Sbjct: 134 VQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQC 193
Query: 187 ADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246
ADIFFL DICQLG+DQRKVN+LAREYCD K K KP+ILSH MLPGL +GQEKMSKSD
Sbjct: 194 ADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDE 253
Query: 247 SSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKT 306
+SAI+M+D E++VN KIKKAYCPP ++E NP Y K IIFP +F + R E NGG+KT
Sbjct: 254 NSAIFMDDSESDVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKT 313
Query: 307 FETMKNL 313
+ T++ L
Sbjct: 314 YYTLQEL 320
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 369 bits (949), Expect = e-128
Identities = 104/296 (35%), Positives = 156/296 (52%), Gaps = 10/296 (3%)
Query: 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKL 77
M + EK RL+ EE + E+EL L+ K +P Y G+EPSG +H+ + + L
Sbjct: 1 MDITEKLRLITRNAEEVVTEEELRQLIETKEKPRAYVGYEPSGEIHLGHMM-TVQKLMDL 59
Query: 78 TSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEIN 137
AG ++ + +AD A LN K G ++I V Y +++IA+G+ R +F+ SE
Sbjct: 60 QEAGFEIIVLLADIHAYLNEK--GTFEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQL 117
Query: 138 ARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADIC 197
+R +Y V+ +AR L R R + R + ++ +Q++YP MQ DI L D+
Sbjct: 118 SR--DYVLDVLKMARITTLNRARRSMDEVSRRK-EDPMVSQMIYPLMQALDIAHLGVDLA 174
Query: 198 QLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEA 257
G+DQRK+++LARE + P+ L +L GL KMS S + I + D
Sbjct: 175 VGGIDQRKIHMLARENLPRLGYS-SPVCLHTPILVGLDGQ--KMSSS-KGNYISVRDPPE 230
Query: 258 EVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
EV KI+KAYCP +VE NP L+ KY I P K VVER GG+ + + + L
Sbjct: 231 EVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEEL 286
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 366 bits (941), Expect = e-127
Identities = 133/306 (43%), Positives = 186/306 (60%), Gaps = 13/306 (4%)
Query: 11 SSTSTPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMK 70
+T + E + + SI EEC D L L+ Y+GFEPSGR+HIAQ ++
Sbjct: 2 GLENTDHTNNEHRLTQLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGRIHIAQALIT 61
Query: 71 AISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFL 130
++ N + G ++ I++ADWFA++N KM GD+ KI+ +GRY IE++ A G+ + F+
Sbjct: 62 VMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFI 121
Query: 131 WSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIF 190
W+SE I + Y ++DIA + + R+ RCCQIMGR+E D L A+QI YPCMQ AD+F
Sbjct: 122 WASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVF 180
Query: 191 FL---KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPS 247
L DICQLG+DQRKVN+LA EY +D K PI LSHHML L ++KMSKSDP
Sbjct: 181 ELVPEGIDICQLGIDQRKVNMLAIEYANDRGLK-IPISLSHHMLMSLSGPKKKMSKSDPQ 239
Query: 248 SAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTF 307
AI+M+D E EV+ KI +AYC + NP EYIKY++ W N K +
Sbjct: 240 GAIFMDDTEQEVSEKISRAYCTDE-TFDNPIFEYIKYLLLRWFGTL-------NLCGKIY 291
Query: 308 ETMKNL 313
++++
Sbjct: 292 TDIESI 297
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 366 bits (940), Expect = e-127
Identities = 111/314 (35%), Positives = 171/314 (54%), Gaps = 21/314 (6%)
Query: 17 QMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNK 76
++ VEE+F + E + E+EL LL + Y G+EPSG HI V V
Sbjct: 3 RVDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVW-MYKVKD 61
Query: 77 LTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136
L AG + A W A +N+K+GGD+ I+ R + + A G+ ERV F+ + E
Sbjct: 62 LVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELA 121
Query: 137 NARADEYWPLVMDIARRNKLPRIMRCCQIMGR-SEQDELTAAQILYPCMQCADIFFLKAD 195
+ + +YW LV+ +A+R L R+ R IMGR +E+ E+ A++++YP MQ +DIF++ D
Sbjct: 122 SDK--DYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMDLD 179
Query: 196 ICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ---------------EK 240
I GMDQRK ++LAR+ + + RK KP+ + ++ LQ K
Sbjct: 180 IALGGMDQRKAHMLARDVAEKLGRK-KPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVK 238
Query: 241 MSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSE 299
MSKS P +A+++ D + ++ KI+KAYCP K V+GNP LE +YI+F D V+R
Sbjct: 239 MSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPA 298
Query: 300 ANGGNKTFETMKNL 313
GG + + + L
Sbjct: 299 KYGGPVEYTSYEEL 312
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 354 bits (909), Expect = e-122
Identities = 112/327 (34%), Positives = 176/327 (53%), Gaps = 33/327 (10%)
Query: 18 MSVEEKFRLV-RSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNK 76
M +EE+ LV + EE + + L +L Y GFE SG +H+ G+M +
Sbjct: 1 MDIEERINLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIAD 60
Query: 77 LTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWI-----AVGMRTERVEFLW 131
AG K ++++ADW + +N+K+GGDL+ IQ V ++ + +G ++VEF+
Sbjct: 61 FQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVL 120
Query: 132 SSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFF 191
+SE + +YW V+DI++ L R+MR IMGR + + A+++YP MQ ADIF+
Sbjct: 121 ASEILEKG--DYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFY 178
Query: 192 LKADICQLGMDQRKVNVLAREYCDDIK--------RKNKPIILSHHMLPGLQQ------- 236
I GMDQRK +V+A E ++ K KP+ + HH+L GLQ+
Sbjct: 179 QGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIE 238
Query: 237 ---------GQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF 287
Q KMSKS P SA+++ D E+ K++KA+CP + V NP L++++YIIF
Sbjct: 239 SEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIF 298
Query: 288 PWDK-KFVVERSEANGGNKTFETMKNL 313
+ +F V R GG+ T+ T + L
Sbjct: 299 REEPTEFTVHRPAKFGGDVTYTTFEEL 325
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 343 bits (882), Expect = e-117
Identities = 86/314 (27%), Positives = 144/314 (45%), Gaps = 20/314 (6%)
Query: 13 TSTPQMSVEEKFRLVRSIGEECIQEDELLNLL-TKKPQPICYDGFEPSGRMHIAQGVMKA 71
+S + E F L+ +E + + ++L +K Y G P+GR H V
Sbjct: 2 SSAATVDPNEAFGLITKNLQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGRPHCGYFV-PM 60
Query: 72 ISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY----LIEIWIAVGMRTERV 127
+ AGC+V + +AD A L+N M L+ + +Y + I ++ + E++
Sbjct: 61 TKLADFLKAGCEVTVLLADLHAFLDN-MKAPLEVVNYRAKYYELTIKAILRSINVPIEKL 119
Query: 128 EFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCA 187
+F+ S +Y + ++ R + + + + ++YP MQ
Sbjct: 120 KFVVGSSYQLTP--DYTMDIFRLSNIVSQNDAKRAGADVVKQVAN-PLLSGLIYPLMQAL 176
Query: 188 DIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPS 247
D FL D G+DQRK+ VLA E + K K L + M+PGL QG KMS SDP+
Sbjct: 177 DEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYK-KRAHLMNPMVPGLAQG-GKMSASDPN 234
Query: 248 SAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPW--------DKKFVVERSE 299
S I + +E +V KI A+C P VE N L +++Y+I P +F ++R E
Sbjct: 235 SKIDLLEEPKQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPE 294
Query: 300 ANGGNKTFETMKNL 313
GG T+++ + +
Sbjct: 295 KFGGPITYKSFEEM 308
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 337 bits (866), Expect = e-115
Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 13/303 (4%)
Query: 15 TPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISV 74
S EEK L+ +E + E++L +L ++ Y G +G+ H+A V +
Sbjct: 2 GDAPSPEEKLHLITRNLQEVLGEEKLKEILKERE-LKIYWGTATTGKPHVAYFVP-MSKI 59
Query: 75 NKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIW----IAVGMRTERVEFL 130
AGC+V I AD A L+N M + ++ Y + ++G+ E+++F+
Sbjct: 60 ADFLKAGCEVTILFADLHAYLDN-MKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFI 118
Query: 131 WSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIF 190
++ ++ EY V ++ + + + + + +LYP +Q D
Sbjct: 119 KGTDYQLSK--EYTLDVYRLSSVVTQHDSKKAGAEVVKQVEH-PLLSGLLYPGLQALDEE 175
Query: 191 FLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI 250
+LK D G+DQRK+ A +Y + K + L + M+PGL KMS S+ S I
Sbjct: 176 YLKVDAQFGGIDQRKIFTFAEKYLPALGYS-KRVHLMNPMVPGLTGS--KMSSSEEESKI 232
Query: 251 YMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETM 310
+ D + +V K+KKA+C P VE N L +IK+++FP +FV+ R E GGNKT+
Sbjct: 233 DLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAY 292
Query: 311 KNL 313
+L
Sbjct: 293 VDL 295
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 334 bits (860), Expect = e-115
Identities = 94/292 (32%), Positives = 157/292 (53%), Gaps = 20/292 (6%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + Y GFEPSG++H+ + + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSAYIGFEPSGKIHLGHYLQ-IKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K G+L +I+ +G Y +++ A+G++ + V S +++
Sbjct: 60 FDIIILLADLAAYLNQK--GELDEIRKIGDYNKKVFEAMGLKAKYVYG--SEFQLD---K 112
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
+Y V +A + L R R +++ R E + A+++YP MQ +L D+ GM
Sbjct: 113 DYTLNVYRLALKTTLKRARRSMELIAR-EDENPKVAEVIYPIMQVNTSHYLGVDVAVGGM 171
Query: 202 DQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261
+QRK+++LARE K + + + +L GL G+ KMS S + I ++D E+
Sbjct: 172 EQRKIHMLARELLPK-----KVVCIHNPVLTGL-DGEGKMSSSKG-NFIAVDDSPEEIRA 224
Query: 262 KIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
KIKKAYCP +VEGNP +E KY + ++R E GG+ T + + L
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFLEY---PLTIKRPEKFGGDLTVNSYEEL 273
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 199 bits (508), Expect = 2e-60
Identities = 54/281 (19%), Positives = 98/281 (34%), Gaps = 31/281 (11%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLN 96
+++L+ K Y G PS MH+ + + + I + D L
Sbjct: 144 NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLW 203
Query: 97 NKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKL 156
+ L + + IA G + F++S + + ++ V+ I +
Sbjct: 204 KDL--TLDQAYGDAVENAKDIIACGFDINKT-FIFSDLDYMGMSSGFYKNVVKIQKHVTF 260
Query: 157 PRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFL--------KADICQL---GMDQRK 205
++ D +I +P +Q A F + DI L +DQ
Sbjct: 261 NQVKGI-----FGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDP 315
Query: 206 VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
+ R+ I KP +L P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 316 YFRMTRDVAPRIGYP-KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 374
Query: 266 AYCPP--------KIVEGNP--CLEYIKYIIFPWDKKFVVE 296
+ GN + ++ F D + +
Sbjct: 375 HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 415
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 194 bits (495), Expect = 5e-59
Identities = 54/281 (19%), Positives = 98/281 (34%), Gaps = 31/281 (11%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLN 96
+++L+ K Y G PS MH+ + + + I + D L
Sbjct: 97 NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLW 156
Query: 97 NKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKL 156
+ L + + IA G + F++S + + ++ V+ I +
Sbjct: 157 KDL--TLDQAYGDAVENAKDIIACGFDINKT-FIFSDLDYMGMSSGFYKNVVKIQKHVTF 213
Query: 157 PRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFL--------KADICQL---GMDQRK 205
++ D +I +P +Q A F + DI L +DQ
Sbjct: 214 NQVKGI-----FGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDP 268
Query: 206 VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
+ R+ I KP +L P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 269 YFRMTRDVAPRIGYP-KPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 327
Query: 266 AYCPP--------KIVEGNP--CLEYIKYIIFPWDKKFVVE 296
+ GN + ++ F D + +
Sbjct: 328 HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQ 368
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 163 bits (413), Expect = 2e-47
Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 33/268 (12%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLN 96
+ LL+ + Y G PS + MHI + + + ++ I + D L
Sbjct: 90 NLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLW 149
Query: 97 NKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKL 156
M L+ GR I+ + +G + +++S+ E + + ++ I++
Sbjct: 150 KSM--RLEDAMAYGRENIKDIVTLGFDPKLT-YIFSNVEASH---HFEENILKISKT--- 200
Query: 157 PRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFF--------LKADICQLGMDQRKVNV 208
+ ++ G Q+ +P + A F + +DQ
Sbjct: 201 INLNEAIKVFGF--DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFR 258
Query: 209 LAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK-AY 267
LAR+ + K KP + +LP L+ KMS SDP+S+IY++D + + KI AY
Sbjct: 259 LARDKAKALGEK-KPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAY 317
Query: 268 CPPKI-----------VEGNPCLEYIKY 284
+ ++ + EY+KY
Sbjct: 318 SGGRKTLEEHREKGGDIDVDVPFEYLKY 345
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 162 bits (410), Expect = 1e-46
Identities = 55/281 (19%), Positives = 96/281 (34%), Gaps = 32/281 (11%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLN 96
++L+L + Y G PS MH+ + + + I + D L
Sbjct: 91 TKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLF 150
Query: 97 NKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKL 156
K + ++ R + IAVG + + + ++ V+ ++R+
Sbjct: 151 -KHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMG---GAFYETVVRVSRQITG 206
Query: 157 PRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKAD-----------ICQLGMDQRK 205
D + + +Q A F + +DQ
Sbjct: 207 STAKAV-----FGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDP 261
Query: 206 VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
+ R+ D +K KP +L P LQ KMS SD ++AI+M D ++ KI K
Sbjct: 262 YFRVCRDVADKLKYS-KPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINK 320
Query: 266 -AYCP-------PKIVEGNP--CLEYIKYIIFPWDKKFVVE 296
A+ + + GNP + Y F D F+ E
Sbjct: 321 YAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKE 361
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 154 bits (389), Expect = 2e-43
Identities = 55/331 (16%), Positives = 101/331 (30%), Gaps = 65/331 (19%)
Query: 38 DELLNLLTKKPQPICYDGFEPS-GRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLN 96
+E L+ K Y G PS G +H+ + + + C V I + D L
Sbjct: 80 EEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLR 139
Query: 97 NKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKL 156
N+ ++ + R I+ IA G ++ +S+ ++ + + + R +
Sbjct: 140 NR-SLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLK--NRYRFSCLVDRMLPI 196
Query: 157 PRIM-----------------------------------RCCQIMGRSEQDE-------- 173
++ R +G +D
Sbjct: 197 SQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKK 256
Query: 174 -----------LTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNK 222
L+ ++ + + + G++Q LAR+ + K
Sbjct: 257 ASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHP-K 315
Query: 223 PIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYI 282
L LPGLQ KMS SDP+SAIY+ D A++ KI + +
Sbjct: 316 NAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFG 375
Query: 283 KYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
+ V K ++ L
Sbjct: 376 ADLSVD------VSVRYLEVFMKDDAELEKL 400
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 150 bits (381), Expect = 1e-42
Identities = 51/281 (18%), Positives = 94/281 (33%), Gaps = 33/281 (11%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKL-TSAGCKVKIWVADWFAQLN 96
+++L++ K Y G PS ++ + L + + I + D +
Sbjct: 63 EKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIF 122
Query: 97 NKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKL 156
L++ ++ IA G E + E I E +P ++ I ++
Sbjct: 123 KS-NLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA----ELYPDILRIEKKISC 177
Query: 157 PRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQ-----------LGMDQRK 205
+I I G +D + +P +Q A F +DQ
Sbjct: 178 SQIKS---IFGF--KDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDP 232
Query: 206 VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
+ R+ + KP + LP LQ Q KMS S +S+I++ D E + KI K
Sbjct: 233 YFRMVRDVAPRLGYL-KPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMK 291
Query: 266 AYCPP--------KIVEGNP--CLEYIKYIIFPWDKKFVVE 296
+ + N + + D + + E
Sbjct: 292 YAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEE 332
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 137 bits (347), Expect = 8e-38
Identities = 37/282 (13%), Positives = 89/282 (31%), Gaps = 32/282 (11%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNN 97
D+ L+ + K + P + + + + + + +V I + D LN
Sbjct: 71 DKFLDDVEAKKPTFIFIQKYPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNR 130
Query: 98 KMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLP 157
+ + + + L++ +A G ++ + + + + + +
Sbjct: 131 EA--TINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG----KMYRTISLVEKATAYN 184
Query: 158 RIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQ---------LGMDQRKVNV 208
+ + + ++ P + A +F + + +
Sbjct: 185 VVQPF-----FNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHS 239
Query: 209 LAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK-AY 267
+ + + +P +L H M+P L G K ++I + D +V KI K A+
Sbjct: 240 IIDQIATTLNFI-QPTVLFHKMVPLL-SGVTKFDIPSDHNSILLSDNAKQVERKINKLAF 297
Query: 268 CP-------PKIVEGNP--CLEYIKYIIFPWDKKFVVERSEA 300
K + G + + IF D V + E
Sbjct: 298 SGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEK 339
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 112 bits (281), Expect = 2e-28
Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 34/281 (12%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGR-MHI--AQGVMKAISVNKLTSAGCKVKIWVADWFAQ 94
+ LL++ Y G PS MH+ M + S + I + D
Sbjct: 67 NLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQD--SFRVPLVIQMTDDEKF 124
Query: 95 LNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRN 154
+ +++++ + I+ IA+G E + + + V I R
Sbjct: 125 YFRNI--PMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM----GCMYRTVAKIERA- 177
Query: 155 KLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQ------------LGMD 202
+ G E + ++P +Q A F +D
Sbjct: 178 --FTASQVRGCFGF--AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAID 233
Query: 203 QRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVK 262
Q L R+ + KP ++ PGL + KMS S +A+ + D E V K
Sbjct: 234 QDPYFRLTRDIAPRLGYL-KPAVIHSKFFPGLSGPKGKMS-SSSGTAVLLTDTEKMVKDK 291
Query: 263 IKK-AYCPPKIVEGNPCLEYIKY---IIFPWDKKFVVERSE 299
I K A+ + L + W F+ + E
Sbjct: 292 INKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEE 332
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 110 bits (277), Expect = 9e-28
Identities = 53/271 (19%), Positives = 90/271 (33%), Gaps = 29/271 (10%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGRMHI--AQGVMKAISVNKLTSAGCKVKIWVADWFAQL 95
D +L + Y G PSG MHI + G + I + D
Sbjct: 62 DLILKDYEEGRGFFLYTGRGPSGPMHIGHIIPFFATKWL--QEKFGVNLYIQITDDEK-F 118
Query: 96 NNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNK 155
K + I IAVG ++ F++ + E + + + + IA++
Sbjct: 119 LFKENLTFDDTKRWAYDNILDIIAVGFDPDKT-FIFQNSEFT----KIYEMAIPIAKKIN 173
Query: 156 LPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKA-DICQLGMDQRKVNVLAREYC 214
++ I +P +Q A FF + + +DQ L R++
Sbjct: 174 FSMAKAV-----FGFTEQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFA 228
Query: 215 DDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYC------ 268
+ + K L +P L KMS S P +AIY+ D +V K+ K
Sbjct: 229 ESLGYY-KTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPT 287
Query: 269 ------PPKIVEGNPCLEYIKYIIFPWDKKF 293
E ++++ DKK
Sbjct: 288 LKEQREKGGEPEKCVVFKWLEIFFEEDDKKL 318
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 63.7 bits (156), Expect = 1e-11
Identities = 47/203 (23%), Positives = 75/203 (36%), Gaps = 36/203 (17%)
Query: 117 WIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQ----IMGRSEQD 172
++A G+ ++ + S + A+ + + + + + I + +
Sbjct: 87 YLAAGLDPQKTTCVVQSA-VPELAELTVYFLNLVT----VSHLRQNPTVKAEIAQKGYGE 141
Query: 173 ELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-N---------- 221
+ A +YP Q ADI A + +G DQ + R +I R+ N
Sbjct: 142 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTR----EIVRRFNALYAPVLAEP 197
Query: 222 KPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAY--------CPPKIV 273
+ + LPGL GQ KMSKS +AI + D EV K+ Y P V
Sbjct: 198 QAQLSRVPRLPGL-DGQAKMSKSLG-NAIALGDSADEVARKVMGMYTDPGHLRASDPGRV 255
Query: 274 EGNPCLEYIKYIIFPWDKKFVVE 296
EGNP + F D V
Sbjct: 256 EGNPVFTF--LDAFDPDPARVQA 276
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 59.9 bits (146), Expect = 2e-10
Identities = 63/274 (22%), Positives = 106/274 (38%), Gaps = 51/274 (18%)
Query: 55 GFEPSGRMHIAQ--GVMK-AISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGR 111
G P+G++HI G ++ + KL G + +VADW A + + +
Sbjct: 18 GMRPTGKLHIGHLVGALENWV---KLQEEGNECFYFVADWHA-----LTTHYDDVSKLKE 69
Query: 112 YLIEI---WIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQ---- 164
Y ++ ++A G+ E+ S + A+ M ++ + R+ R
Sbjct: 70 YTRDLVRGFLACGIDPEKSVIFVQSG-VKEHAELALLFSMIVS----VSRLERVPTYKEI 124
Query: 165 IMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-N-- 221
+ +D TA ++YP +Q ADI KA+ +G DQ L R +I R+ N
Sbjct: 125 KSELNYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTR----EIARRFNYL 180
Query: 222 --------KPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAY------ 267
+ I+ LPG G+ KMSKS + I +E E E+ I +
Sbjct: 181 YDEVFPEPEAILSRVPKLPGT-DGR-KMSKSYG-NIINLEISEKELEQTILRMMTDPARV 237
Query: 268 --CPPKIVEGNPCLEYIKYIIFPWDKKFVVERSE 299
P E P +Y + F ++ E
Sbjct: 238 RRSDPGNPENCPVWKY--HQAFDISEEESKWVWE 269
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 57.2 bits (139), Expect = 1e-09
Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 35/216 (16%)
Query: 88 VADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTER-VEFLWSSEEINARADEYWPL 146
+ D+ A L N + D + + IA G+ E+ F+ S + + W +
Sbjct: 41 IVDYHA-LTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTLFVQS--HVPEHTELSW-V 96
Query: 147 VMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL-YPCMQCADIFFLKADICQLGMDQRK 205
+ L + R Q ++ + E + +L YP +Q ADI KAD +G DQ +
Sbjct: 97 FTTLTP---LGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQ 153
Query: 206 VNVLAREYCDDIKRK-N----------KPIILSHHM-LPGLQQGQEKMSKSDPSSAIYME 253
L R +I R+ N + ++ +PG+ G+ KMSKS + I +
Sbjct: 154 HIELTR----EIARRFNHLFGETFPEPQALLNPEAPRVPGID-GKAKMSKSLG-NTIGLL 207
Query: 254 DEEAEVNVKIKKAY--------CPPKIVEGNPCLEY 281
+ E + KI+ P E Y
Sbjct: 208 EPEESIWQKIQHLPDDPQRIRLSDPGDPERTILFTY 243
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 54.1 bits (131), Expect = 2e-08
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 22/102 (21%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-NK----------PIILSHH 229
YP + ADI + + +G DQ++ L+R DI + N P I
Sbjct: 140 YPVLMAADILLYQTNQVPVGEDQKQHLELSR----DIASRFNNLYGDIFKIPEPFIPKAG 195
Query: 230 ---MLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKA 266
M LQ +KMSKSD + + I + ++ V KIK+A
Sbjct: 196 ARVM--SLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRA 235
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 54.2 bits (131), Expect = 2e-08
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-NK----------PIILSHH 229
YP + ADI D+ G DQ++ L R ++ + NK I
Sbjct: 159 YPPLMAADILLYGTDLVPPGEDQKQHLELTR----NLAERFNKKYNDIFTIPEVKIPKVG 214
Query: 230 ---MLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKA 266
M L +KMSKSDP+ + I + DE ++ KIK A
Sbjct: 215 ARIM--SLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSA 254
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 53.3 bits (129), Expect = 3e-08
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-NK----------PIILSHH 229
YP + ADI DI +G DQ++ L R D+ + NK I
Sbjct: 125 YPPLMAADILLYNTDIVPVGEDQKQHIELTR----DLAERFNKRYGELFTIPEARIPKVG 180
Query: 230 ---MLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKA 266
M L +KMSKSDP+ + I + D+ + KIK A
Sbjct: 181 ARIM--SLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA 220
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 52.2 bits (126), Expect = 7e-08
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-NK----------PIILSHH 229
YP + DI + DI +G DQ++ L R D+ ++ K +
Sbjct: 135 YPALMAGDILLYQPDIVPVGNDQKQHLELTR----DLAQRIQKKFKLKLRLPQFVQNKDT 190
Query: 230 ---MLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKA 266
M L +KMSKS + IY++D + V KI++A
Sbjct: 191 NRIM--DLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 52.2 bits (126), Expect = 8e-08
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-NK-------------PIIL 226
YP + ADI A +G DQ++ LAR DI + N P I
Sbjct: 131 YPVLMAADILLYGAHQVPVGSDQKQHLELAR----DIATRFNNIYSPEQPIFTIPEPYIP 186
Query: 227 SHH---MLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKA 266
+ + M LQ +KMSKSD + + I + ++ + KI KA
Sbjct: 187 TVNARVM--SLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKA 229
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 46.4 bits (111), Expect = 6e-06
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 19/98 (19%)
Query: 181 YPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRK-N----------KPIILSHH 229
YP + ADI I +G DQ + +AR DI K N + +
Sbjct: 127 YPVLMAADILLFDTRIVPVGKDQIQHVEIAR----DIALKVNNEWGEIFTLPEARVNEEV 182
Query: 230 M-LPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKA 266
+ G G KMSKS + I + E + +I
Sbjct: 183 AVVVGT-DGA-KMSKSYQ-NTIDIFSSEKTLKKQISSI 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 49/138 (35%)
Query: 18 MSVEEKFRLVRSIGE---ECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISV 74
MS+E +V G + DEL GR + M AI+
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDEL-------------------GRSNYG---MIAINP 1814
Query: 75 NKLTSAGCK--VKIWVA------DWFAQL-N-NKMG------GDLKKIQTVGRYL----- 113
++ ++ + ++ V W ++ N N GDL+ + TV L
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL 1874
Query: 114 --IEIW-IAVGMRTERVE 128
I+I + + E VE
Sbjct: 1875 QKIDIIELQKSLSLEEVE 1892
Score = 32.7 bits (74), Expect = 0.17
Identities = 45/303 (14%), Positives = 85/303 (28%), Gaps = 102/303 (33%)
Query: 41 LNLLTKKPQPICY------DGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVA----- 89
L + Q Y GF P +G G + A
Sbjct: 240 LIGVI---QLAHYVVTAKLLGFTPGELRSYLKGA-----------TGHSQGLVTAVAIAE 285
Query: 90 --DW--FAQLNNKMGGDLKKIQTVGRYLIEI--WIAVGMRTER---VEFLWSSE-EINAR 139
W F K I + +I G+R L S E +
Sbjct: 286 TDSWESFFVSVRKA--------------ITVLFFI--GVRCYEAYPNTSLPPSILEDSLE 329
Query: 140 ADEYWP----LVMDIARRNKLPRIMRCCQIMGRSEQDELT------------AAQILYP- 182
+E P + ++ + + + + +Q E++ Q LY
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGL 389
Query: 183 CMQCADIFFLKA----DICQLGMDQRKVNVLAREYCDDIKRKNKPIIL---SHHMLPGLQ 235
+ KA D ++ +RK+ R + P+ SH ++P
Sbjct: 390 NLTLRKA---KAPSGLDQSRIPFSERKLKFSNR-FL--------PVASPFHSHLLVPASD 437
Query: 236 QGQEKMSKSD----PSS-AIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP-- 288
+ + K++ I + D ++++ +IV+ C+ I P
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD---CI-----IRLPVK 489
Query: 289 WDK 291
W+
Sbjct: 490 WET 492
Score = 31.9 bits (72), Expect = 0.36
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 37/106 (34%)
Query: 222 KPIILSH----HMLP-------GLQQGQEKMSKS--DPSSAIYMEDEEAEVNVKIKKAYC 268
+P+ LSH H+L Q QE+ +K +P+ +DE
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE------------- 53
Query: 269 PPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLL 314
P E L K++ +V E + + + + L
Sbjct: 54 PTTPAE----L-VGKFL------GYVSSLVEPSKVGQFDQVLNLCL 88
Score = 31.6 bits (71), Expect = 0.50
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 25/88 (28%)
Query: 200 GMDQRKVNVLAREYCD---------------DIKRKNKPIILSHHMLPGLQQGQE----- 239
GMD K + A++ + DI N P+ L+ H G ++G+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIH--FGGEKGKRIRENY 1688
Query: 240 -KMS-KSDPSSAIYMEDEEAEVNVKIKK 265
M ++ + E E+N
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Score = 31.2 bits (70), Expect = 0.64
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 236 QG-QEK-M-----SKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP 288
QG QE+ M S + ++ A+ + K + IV NP I F
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVW---NRADNHFKDTYGFSILDIVINNP---VNLTIHFG 1677
Query: 289 WDK-KFVVERSEANGGNKTFETMKNLLLIMKK 319
+K K + E A FET+ + L +K
Sbjct: 1678 GEKGKRIRENYSAM----IFETIVDGKLKTEK 1705
Score = 29.6 bits (66), Expect = 1.6
Identities = 51/359 (14%), Positives = 97/359 (27%), Gaps = 127/359 (35%)
Query: 3 INSQNDEGSSTSTPQM------SVEEKFRL----VRSIGEECIQEDELLNLLTKKPQPI- 51
++S + Q+ E + L + ++ + +QE++ L K + I
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQEND--TTLVKTKELIK 124
Query: 52 CYDGFEPSGRMHIAQGVMKAISVNKL---TSAGCKVKIWVADWFAQLNNKMGG------- 101
Y R+ + K + + L G ++ A GG
Sbjct: 125 NY--IT--ARIMAKRPFDKKSN-SALFRAVGEG-NAQL-----VAI----FGGQGNTDDY 169
Query: 102 --DLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIAR--RNK-- 155
+L+ + L+ I T L A++ + ++I N
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAET-----LSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 156 -------------LPRI--------MRCCQIMGRS--------------EQDELTAAQI- 179
P I + +++G + Q +TA I
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 180 -------LYPCMQCA-DIFFLKADI---CQLGMDQRKVNVLAREYCDDIKRKNKPIILSH 228
+ ++ A + F I C + E + + P
Sbjct: 285 ETDSWESFFVSVRKAITVLFF---IGVRCYEAYPNTSLPPSILEDSLEN-NEGVP----S 336
Query: 229 HML--PGLQQGQ-----EKMSKSDP-SSAIYMEDEEAEVNVKIKKAYCPPK--IVEGNP 277
ML L Q Q K + P + + + VN K +V G P
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI----SLVN--------GAKNLVVSGPP 383
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 38.9 bits (91), Expect = 0.001
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 180 LYPCMQCADIFFLKADICQLGMDQRKVNVLA-REYCDDIKRKNKP--IILSHHMLPGLQQ 236
LYP Q D ++AD+ ++G ++ N+L RE + + + +L GL
Sbjct: 174 LYPFAQAYDSVAIRADV-EMGGTDQRFNLLVGREV---QRAYGQSPQVCFLMPLLVGL-D 228
Query: 237 GQEKMSKS 244
G+EKMSKS
Sbjct: 229 GREKMSKS 236
Score = 31.6 bits (72), Expect = 0.37
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 14 STPQMSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGR-MHI 64
+ + EE L++ EE + E+ELL L + G +P+ +H+
Sbjct: 2 AGTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHL 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.002
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 38/158 (24%)
Query: 185 QCADIF--FLKA---DI-CQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQ 238
Q DI F A + C+ D K ++L++E D I + + + L Q
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 239 EKMSKSDPSSAIYMEDEEAEVNVK-IKKAYCPPKIVEGNPCLEYIKYI-----------I 286
E+M + ++E+ +N K + K + P + YI +
Sbjct: 76 EEMVQK------FVEEVL-RINYKFLMSPI---KTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 287 FPWDKKFVVERSEANGGNKTFETMKNLLLIMKKEIYIL 324
F K+ V R + + ++ LL ++ +L
Sbjct: 126 FA---KYNVSRLQ------PYLKLRQALLELRPAKNVL 154
Score = 39.1 bits (90), Expect = 0.002
Identities = 63/347 (18%), Positives = 119/347 (34%), Gaps = 103/347 (29%)
Query: 37 EDELLNLLTKKPQPICY------------DGFEPSGRM-----------HIAQGVMKAIS 73
+ EL LL KP C + F S ++ ++ IS
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 74 VNK----LTSAGCKVKIWVADWFAQLNNKMGGDLKK-IQTVGRYLIEIWIAVGMRTERVE 128
++ LT +VK + + L+ + DL + + T + I IA +R
Sbjct: 291 LDHHSMTLTPD--EVKSLLLKY---LDCRP-QDLPREVLTTNPRRLSI-IAESIR----- 338
Query: 129 FLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQI--LYPCMQC 186
+ A D W V +KL I+ + L A+ ++ +
Sbjct: 339 ------DGLATWD-NWKHVN----CDKLTTIIESS-------LNVLEPAEYRKMF--DRL 378
Query: 187 ADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDP 246
+ +F A I +L+ + D IK ++ H +++ ++ + S P
Sbjct: 379 S-VFPPSAHI--------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 247 SSAIYME-----DEEAEVNVKIKKAYCPPKIVEGN----PCLE-YI-KYI---------- 285
S IY+E + E ++ I Y PK + + P L+ Y +I
Sbjct: 430 S--IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 286 ----IFP---WDKKFVVERSEANGGNKTFE-TMKNLLLIMKK-EIYI 323
+F D +F+ ++ + ++ N L +K + YI
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Score = 31.4 bits (70), Expect = 0.50
Identities = 41/248 (16%), Positives = 72/248 (29%), Gaps = 84/248 (33%)
Query: 111 RYLIEIWIAVGMRTERVE-FLWSSEEINARADEY-WPLVMDIARRNKLPRIMRCCQIMGR 168
L W + + E V+ F+ IN Y + L+ I + P +M I
Sbjct: 65 LRLF--WTLLSKQEEMVQKFVEEVLRIN-----YKF-LMSPIKTEQRQPSMMTRMYI--- 113
Query: 169 SEQDEL-TAAQIL--YPCMQCADIFFLKADICQL---------GMD----QRKVNVLARE 212
++D L Q+ Y + L+ + +L G+ +A +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----WVALD 169
Query: 213 YCDD---------------IKRKNKP--II-----LSHHMLPGLQQGQEKMSKSDPSSAI 250
C +K N P ++ L + + P SD SS I
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------SDHSSNI 223
Query: 251 YMEDEEAEVNVK---IKKAYCPPKIVEGNPCLEYIKYIIFP--WDKKFVVERSEA-NGGN 304
+ + ++ K Y CL ++ + K A N
Sbjct: 224 KLRIHSIQAELRRLLKSKPY--EN------CL-----LVLLNVQNAKAW----NAFNLSC 266
Query: 305 KTFETMKN 312
K T +
Sbjct: 267 KILLTTRF 274
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.06A {Nitrosospira multiformis}
Length = 160
Score = 32.4 bits (73), Expect = 0.093
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 133 SEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTA 176
S ++A + W + + + P +++ C+ +G + A
Sbjct: 7 SIVVDAPVERVWSRIRNFHDFSWAPSLIKSCKKVGGGGGYSVGA 50
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785,
legionella pneumophila pneumophila STR. philadelphia 1;
1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Length = 146
Score = 28.8 bits (64), Expect = 1.5
Identities = 4/48 (8%), Positives = 18/48 (37%)
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEF 129
+ + +++ L + + R ++ + I +G + ++
Sbjct: 62 FEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLLNIKLGDKVRTIKV 109
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: CIT; 1.65A {Thermotoga
maritima} SCOP: c.1.29.1
Length = 188
Score = 27.7 bits (62), Expect = 4.5
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 189 IFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE 239
+F LK+DI L + + +K + K + + + GL +G+E
Sbjct: 35 VFLLKSDILNL-----------KFHLKILKDRGKTVFVDMDFVNGLGEGEE 74
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid
receptor, crystal, high resolution, PP2C, HORM receptor;
1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A*
3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A*
3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*
Length = 190
Score = 27.0 bits (59), Expect = 6.4
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 134 EEINARADEYWPLVMDIARRNKLPRIMRCCQIMG 167
+ I+A A WPL+ + ++ C+++
Sbjct: 41 QRIHAPASVVWPLIRRFDNPERYKHFVKRCRLIS 74
>3kts_A Glycerol uptake operon antiterminator regulatory; structural
genomics, PSI-2, protein structur initiative; HET: UNL;
2.75A {Listeria monocytogenes str}
Length = 192
Score = 27.0 bits (60), Expect = 6.6
Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 11/51 (21%)
Query: 189 IFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE 239
+ L+ + QL + + K ++L ++ GL+
Sbjct: 33 MVMLETHVAQL-----------KALVKYAQAGGKKVLLHADLVNGLKNDDY 72
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor,
A sensor, drought tolerance, plant development; HET:
A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A*
3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
Length = 211
Score = 27.1 bits (59), Expect = 6.7
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 134 EEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSE 170
+ I+A + W +V + ++ C + E
Sbjct: 56 QRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFE 92
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type
lysozyme-like structure, lytic transglycosylase,; HET:
NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 3t36_A 2y8p_A
Length = 206
Score = 27.2 bits (60), Expect = 7.1
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 125 ERVEFLWSSEEINARADEYWPLVMDIARRNKLPR-----IMR 161
+ W+++ RA ++ P+ + I+
Sbjct: 24 DYTNPPWNAKVPVQRAMQWMPISQKAGAAWGVDPQLITAIIA 65
>2le1_A Uncharacterized protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative,
unknown function; NMR {Thermobifida fusca}
Length = 151
Score = 26.7 bits (58), Expect = 7.6
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 133 SEEINARADEYWPLVMDIARRNK-LPRIMRCC 163
S E+ A A + W LV D + ++ P++
Sbjct: 7 SVEVAAPAADVWTLVGDFSAIHRWHPQVSAPT 38
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 27.4 bits (60), Expect = 8.3
Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMG--------RSEQDELTAAQILYPCMQCADIF 190
V ++ + + + + + + A+I++ AD
Sbjct: 195 ANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGC 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,979,448
Number of extensions: 296455
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 52
Length of query: 326
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 232
Effective length of database: 4,077,219
Effective search space: 945914808
Effective search space used: 945914808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)