RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 047474
(326 letters)
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 158 bits (401), Expect = 1e-46
Identities = 85/299 (28%), Positives = 144/299 (48%), Gaps = 11/299 (3%)
Query: 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKL 77
S EEK L+ +E + E++L +L ++ Y G +G+ H+A V +
Sbjct: 2 PSPEEKLHLITRNLQEVLGEEKLKEILKERE-LKIYWGTATTGKPHVAYFVP-MSKIADF 59
Query: 78 TSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY---LIEIWIAVGMRTERVEFLWSSE 134
AGC+V I AD A L+N V Y + + ++G+ E+++F+ ++
Sbjct: 60 LKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTD 119
Query: 135 EINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKA 194
+ EY V ++ + + + + + +LYP +Q D +LK
Sbjct: 120 YQLS--KEYTLDVYRLSSVVTQHDSKKAGAEVVKQV-EHPLLSGLLYPGLQALDEEYLKV 176
Query: 195 DICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMED 254
D G+DQRK+ A +Y + +K + L + M+PGL + MS S+ S I + D
Sbjct: 177 DAQFGGIDQRKIFTFAEKYLPAL-GYSKRVHLMNPMVPGLTGSK--MSSSEEESKIDLLD 233
Query: 255 EEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
+ +V K+KKA+C P VE N L +IK+++FP +FV+ R E GGNKT+ +L
Sbjct: 234 RKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDL 292
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 124 bits (311), Expect = 3e-33
Identities = 53/300 (17%), Positives = 98/300 (32%), Gaps = 32/300 (10%)
Query: 38 DELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLN 96
+++L+ K Y G PS MH+ + + + I + D L
Sbjct: 63 NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLW 122
Query: 97 NKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKL 156
+ L + + IA G + + + + ++ V+ I +
Sbjct: 123 KDL--TLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYM-GMSSGFYKNVVKIQKHVTF 179
Query: 157 PRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKAD-----------ICQLGMDQRK 205
++ D +I +P +Q A F + +DQ
Sbjct: 180 NQVKGIFGFT-----DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDP 234
Query: 206 VNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKK 265
+ R+ I KP +L P LQ Q KMS SDP+S+I++ D ++ K+ K
Sbjct: 235 YFRMTRDVAPRIG-YPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNK 293
Query: 266 AYCP--------PKIVEGNP--CLEYIKYIIFPWDKKFVVE-RSEANGGNKTFETMKNLL 314
+ GN + ++ F D + + R + G +K L
Sbjct: 294 HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKAL 353
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 121 bits (304), Expect = 6e-33
Identities = 91/292 (31%), Positives = 153/292 (52%), Gaps = 20/292 (6%)
Query: 22 EKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKAISVNKLTSAG 81
++F +++ E I E+EL +L KK + Y GFEPSG++H+ + + L +AG
Sbjct: 2 DEFEMIKRNTSEIISEEELREVL-KKDEKSAYIGFEPSGKIHLGHYLQ-IKKMIDLQNAG 59
Query: 82 CKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARAD 141
+ I +AD A LN K +L +I+ +G Y +++ A+G++ + V + +
Sbjct: 60 FDIIILLADLHAYLNQKG--ELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKD---- 113
Query: 142 EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGM 201
Y V +A + L R R +++ R E + A+++YP MQ DI +L D+ GM
Sbjct: 114 -YTLNVYRLALKTTLKRARRSMELIAR-EDENPKVAEVIYPIMQVNDIHYLGVDVAVGGM 171
Query: 202 DQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNV 261
+QRK+++LARE K ++ H+ + G+ KMS + I ++D E+
Sbjct: 172 EQRKIHMLARELL------PKKVVCIHNPVLTGLDGEGKMSS-SKGNFIAVDDSPEEIRA 224
Query: 262 KIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNL 313
KIKKAYCP +VEGNP +E KY + + ++R E GG+ T + + L
Sbjct: 225 KIKKAYCPAGVVEGNPIMEIAKYFL---EYPLTIKRPEKFGGDLTVNSYEEL 273
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 96.4 bits (239), Expect = 2e-23
Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 24/277 (8%)
Query: 53 YDGFEPSGRMHIAQGVMKAISVNKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRY 112
+ G +PSG + I + +L + D A + D +++ R
Sbjct: 5 FSGIQPSGVITIGNYIGALRQFVEL-QHEYNCYFCIVDQHAITVWQ---DPHELRQNIRR 60
Query: 113 LIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQD 172
L +++AVG+ + + + ++ I +L R+ + + E
Sbjct: 61 LAALYLAVGIDPTQ--ATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAV 118
Query: 173 ELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKP--------I 224
+A + YP + ADI DI +G DQ++ L R+ + ++ I
Sbjct: 119 --SAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARI 176
Query: 225 ILSHHMLPGLQQGQEKMSKSDPS--SAIYMEDEEAEVNVKIKKAYC-----PPKIVEGNP 277
+ L +KMSKSDP+ + I + D+ + KIK A E P
Sbjct: 177 PKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKP 236
Query: 278 CLEYIKYIIFPWDKKFVVERSEANGGNKTFETMKNLL 314
+ + I+ +E E K + K L
Sbjct: 237 GISNL-LNIYSTLSGQSIEELERQYEGKGYGVFKADL 272
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 83.9 bits (206), Expect = 7e-19
Identities = 42/246 (17%), Positives = 83/246 (33%), Gaps = 9/246 (3%)
Query: 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSG-RMHIAQGVMKAISVNK 76
+ EE L++ EE + E+ELL L + G +P+ +H+ V+ + +
Sbjct: 2 HTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVV-LRKMRQ 60
Query: 77 LTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 136
G KV + + D+ + + G + E + ++
Sbjct: 61 FQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFE 120
Query: 137 NARADE------YWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIF 190
E + +V + + R ++ ++LYP Q D
Sbjct: 121 LRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSV 180
Query: 191 FLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAI 250
++AD+ G DQR ++ RE + + L +L GL ++ D +
Sbjct: 181 AIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFL-MPLLVGLDGREKMSKSLDNYIGL 239
Query: 251 YMEDEE 256
E
Sbjct: 240 TEPPEA 245
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 68.6 bits (167), Expect = 1e-13
Identities = 34/274 (12%), Positives = 84/274 (30%), Gaps = 26/274 (9%)
Query: 28 RSIGEECIQEDELLNLLTKKPQPICYDGFEPSGR-MHIAQGVMKAISVNK-LTSAGCKVK 85
R + + E + +LL K+ + Y G +P+ +HI G + + G +
Sbjct: 11 RGLIYQQTDEQGIEDLLNKEQVTL-YCGADPTADSLHI--GHLLPFLTLRRFQEHGHRPI 67
Query: 86 IWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRT--ERVEFLWSSEEINARADEY 143
+ + + + G ++ ++ I + EF + ++
Sbjct: 68 VLIGGGTGMIGD-PSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDW 126
Query: 144 W------PLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQCADIFF----LK 193
+ D + + ++ + + ++ + Y +Q D L
Sbjct: 127 LGQISLISFLRDYGKHVGVNYMLG-KDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELN 185
Query: 194 ADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYME 253
I G DQ E + + L+ ++ +K KS+ +
Sbjct: 186 CKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSD--GKKFGKSESGAVWLDA 243
Query: 254 DEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF 287
++ + + V +++KY F
Sbjct: 244 EKTSPYEFYQFWINQSDEDVI-----KFLKYFTF 272
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 45.5 bits (107), Expect = 5e-06
Identities = 35/243 (14%), Positives = 79/243 (32%), Gaps = 23/243 (9%)
Query: 18 MSVEEKFRLVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGR-MHIAQGV--MKAISV 74
M + + + R + + ED L LL ++ + Y GF+P+ +HI +
Sbjct: 1 MDLLAELQW-RGLVNQTTDEDGLRKLLNEERVTL-YCGFDPTADSLHIGHLATILTMRRF 58
Query: 75 NKLTSAGCKVKIWVADWFAQLNNKMGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 134
+ AG + V + + G + + +E W A + ++
Sbjct: 59 QQ---AGHRPIALVGGATGLIGDP-SGKKSERTLNAKETVEAWSARIKEQLGRFLDFEAD 114
Query: 135 EINARAD---------EYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQILYPCMQ 185
A+ + + D+ + + +M + R + ++ + Y +Q
Sbjct: 115 GNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSR-IETGISFTEFSYMMLQ 173
Query: 186 CADIFFL----KADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKM 241
D L + G DQ E K + + L+ ++ +
Sbjct: 174 AYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGK 233
Query: 242 SKS 244
++S
Sbjct: 234 TES 236
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 29.6 bits (67), Expect = 0.35
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 189 IFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE 239
+F LK+DI L + + +K + K + + + GL +G+E
Sbjct: 23 VFLLKSDILNL-----------KFHLKILKDRGKTVFVDMDFVNGLGEGEE 62
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20
{Geobacillus kaustophilus [TaxId: 1462]}
Length = 147
Score = 28.6 bits (63), Expect = 0.64
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 133 SEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELTAAQIL 180
S E+ +E W +MD + L + + C+ + +D+ A +
Sbjct: 6 SIELKGTVEEVWSKLMDPSI---LSKCIMGCKSLELIGEDKYKADLQI 50
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus
cereus [TaxId: 1396]}
Length = 138
Score = 28.2 bits (62), Expect = 0.70
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 132 SSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDELT 175
+S EI ++ W L+ + ++ L
Sbjct: 6 TSMEIFGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEGGRVRHLA 49
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN,
cyclase/aromatase domain {Streptomyces glaucescens
[TaxId: 1907]}
Length = 155
Score = 26.9 bits (58), Expect = 2.4
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 124 TERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMGRSEQDE 173
R + +S +NA + W + DI P + QD
Sbjct: 2 AARTD---NSIVVNAPFELVWDVTNDIEA---WPELFSEYAEAEILRQDG 45
>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli
[TaxId: 562]}
Length = 109
Score = 25.7 bits (56), Expect = 3.5
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 125 ERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIM 166
+ + A + E ++D A RN + C +
Sbjct: 7 PHQDLCPDGAVLEANSGET---ILDAALRNGIEIEHACEKSC 45
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 26.2 bits (56), Expect = 5.1
Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 4/145 (2%)
Query: 103 LKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRC 162
++ ++EI ++ + E+ I +C
Sbjct: 138 IRLAFEKRDKIMEILNKYREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKC 197
Query: 163 CQIMGRSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQR---KVNVLAREYCDDIKR 219
+ ++ + D G D +E ++
Sbjct: 198 PEGHEGWVDIRSGNVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYG 257
Query: 220 KNKPIILSHHMLPGLQQGQEKMSKS 244
K P+ L + + G++ + KMS S
Sbjct: 258 KEAPLSLMYEFV-GIKGQKGKMSGS 281
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 25.6 bits (55), Expect = 6.7
Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 23/186 (12%)
Query: 108 TVGRYLIEIWIAVGMRTERVEFLWSSEEINARADEYWPLVMDIARRNKLPRIMRCCQIMG 167
T+G+YL E V V ++ D L+ I + ++
Sbjct: 4 TLGKYLFERLKQVN-----VNTVFGLP-----GDFNLSLLDKIYEVEGMRWAGNANELNA 53
Query: 168 RSEQDELTAAQILYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILS 227
D + + + + L A G V VL I + K ++L
Sbjct: 54 AYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLH 113
Query: 228 HHMLPGLQQGQEKMSKSDPSSAIYMEDEE---AEVNVKIKKAYCPPKIVEGNPCLEYIKY 284
H + G +MS + + + D AE++ I+ Y + V Y
Sbjct: 114 HTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPV----------Y 163
Query: 285 IIFPWD 290
+ P +
Sbjct: 164 LGLPAN 169
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,235,779
Number of extensions: 59642
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 20
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)