BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047475
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RI6|A Chain A, A Novel Mechanism Of Sulfur Transfer Catalyzed By
           O-Acetylhomoserine Sulfhydrylase In Methionine
           Biosynthetic Pathway Of Wolinella Succinogenes
 pdb|3RI6|B Chain B, A Novel Mechanism Of Sulfur Transfer Catalyzed By
           O-Acetylhomoserine Sulfhydrylase In Methionine
           Biosynthetic Pathway Of Wolinella Succinogenes
          Length = 430

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 3   ATWMLEVSSKSAEAQLGVDLARIYRDSA--LYDDNQQNLFNIHGSLSAAVIFSGLIN-CT 59
           A +  E S + A+  LG  L  +Y  S+    +D +Q L N+ G+L    + SG+    T
Sbjct: 53  AAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAIST 112

Query: 60  LVLPYVQTELTVVYWERFAG 79
            +L   +   +VV  +R  G
Sbjct: 113 AILTLARAGDSVVTTDRLFG 132


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.141    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,841,126
Number of Sequences: 62578
Number of extensions: 200255
Number of successful extensions: 327
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 1
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)