Query 047475
Match_columns 233
No_of_seqs 131 out of 1275
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 4.6E-38 1E-42 313.7 20.7 232 2-233 1131-1470(1470)
2 TIGR00955 3a01204 The Eye Pigm 100.0 4.5E-33 9.7E-38 260.1 20.1 199 35-233 385-617 (617)
3 TIGR00956 3a01205 Pleiotropic 100.0 3.6E-33 7.7E-38 279.0 18.0 196 35-233 1122-1394(1394)
4 KOG0065 Pleiotropic drug resis 100.0 2.1E-33 4.5E-38 269.0 12.3 232 2-233 1041-1387(1391)
5 PLN03211 ABC transporter G-25; 100.0 6.7E-32 1.4E-36 253.1 18.0 196 35-230 431-659 (659)
6 TIGR00956 3a01205 Pleiotropic 100.0 1E-31 2.2E-36 268.6 19.3 194 35-229 446-694 (1394)
7 PLN03140 ABC transporter G fam 100.0 1.8E-30 3.8E-35 259.6 18.8 191 37-229 565-789 (1470)
8 KOG0061 Transporter, ABC super 100.0 1.7E-29 3.7E-34 234.8 18.5 199 35-233 382-612 (613)
9 KOG0065 Pleiotropic drug resis 99.9 4.5E-27 9.6E-32 225.8 16.2 196 35-231 485-732 (1391)
10 PF01061 ABC2_membrane: ABC-2 99.3 5.6E-14 1.2E-18 113.4 -4.6 155 20-176 9-184 (210)
11 TIGR03062 pip_yhgE_Cterm YhgE/ 98.9 1.7E-07 3.8E-12 76.1 15.4 144 82-229 58-207 (208)
12 TIGR01247 drrB daunorubicin re 98.7 2.4E-06 5.2E-11 70.8 17.1 140 81-223 87-234 (236)
13 TIGR01291 nodJ ABC-2 type tran 98.6 5.2E-06 1.1E-10 69.7 17.7 150 71-228 81-250 (253)
14 TIGR00025 Mtu_efflux ABC trans 98.5 2.2E-05 4.9E-10 64.9 17.0 144 82-227 77-230 (232)
15 PF06422 PDR_CDR: CDR ABC tran 98.3 8.9E-07 1.9E-11 64.2 5.3 47 186-232 31-77 (103)
16 TIGR03861 phenyl_ABC_PedC alco 98.3 0.00016 3.6E-09 60.5 17.8 152 71-227 90-250 (253)
17 PRK15066 inner membrane transp 98.1 0.00042 9.2E-09 58.2 18.0 145 81-232 101-256 (257)
18 COG0842 ABC-type multidrug tra 98.1 0.00036 7.8E-09 58.3 17.3 147 84-231 131-285 (286)
19 TIGR01248 drrC daunorubicin re 97.4 0.0031 6.8E-08 48.8 11.0 109 64-176 13-124 (152)
20 PF08370 PDR_assoc: Plant PDR 97.2 0.00092 2E-08 43.9 4.8 47 186-232 10-58 (65)
21 PF12679 ABC2_membrane_2: ABC- 97.1 0.023 4.9E-07 47.7 14.0 157 71-228 89-275 (277)
22 TIGR03518 ABC_perm_GldF glidin 97.0 0.031 6.8E-07 46.6 13.7 151 70-227 71-239 (240)
23 PF12698 ABC2_membrane_3: ABC- 96.7 0.0005 1.1E-08 58.8 0.3 150 64-222 181-343 (344)
24 COG1682 TagG ABC-type polysacc 96.2 0.65 1.4E-05 39.3 17.4 141 82-230 106-257 (263)
25 PF03379 CcmB: CcmB protein; 95.9 0.16 3.6E-06 41.6 11.3 133 70-226 66-210 (215)
26 PRK15176 Vi polysaccharide exp 95.2 1.6 3.5E-05 36.9 15.8 99 129-233 155-264 (264)
27 COG1277 NosY ABC-type transpor 95.1 0.9 1.9E-05 38.2 13.5 159 70-228 81-275 (278)
28 TIGR01257 rim_protein retinal- 94.4 1.8 3.9E-05 46.9 15.7 104 60-166 669-774 (2272)
29 TIGR01190 ccmB heme exporter p 93.6 1.9 4.2E-05 35.2 11.6 79 69-149 62-148 (211)
30 TIGR01257 rim_protein retinal- 92.6 2.6 5.7E-05 45.7 13.6 97 63-161 1699-1799(2272)
31 PF12730 ABC2_membrane_4: ABC- 90.6 4.8 0.0001 31.6 10.6 95 71-166 69-179 (232)
32 TIGR03733 lanti_perm_MutG lant 77.9 38 0.00083 28.0 10.5 69 81-149 85-158 (248)
33 KOG0059 Lipid exporter ABCA1 a 76.1 30 0.00066 34.5 10.7 121 41-166 297-419 (885)
34 COG4587 ABC-type uncharacteriz 73.2 55 0.0012 27.5 14.5 85 140-228 164-259 (268)
35 COG1511 Predicted membrane pro 72.0 85 0.0018 30.9 12.6 145 76-226 610-763 (780)
36 TIGR03732 lanti_perm_MutE lant 64.6 80 0.0017 26.1 11.5 73 73-145 64-148 (241)
37 PF01102 Glycophorin_A: Glycop 63.6 13 0.00028 27.7 3.9 29 202-230 66-94 (122)
38 PTZ00046 rifin; Provisional 61.9 9.4 0.0002 33.7 3.4 30 202-232 316-345 (358)
39 TIGR01477 RIFIN variant surfac 61.0 10 0.00023 33.3 3.5 30 202-232 311-340 (353)
40 PF02009 Rifin_STEVOR: Rifin/s 57.4 14 0.00031 31.9 3.7 28 204-232 259-286 (299)
41 PF12051 DUF3533: Protein of u 54.4 1.6E+02 0.0034 26.2 11.2 53 82-135 240-296 (382)
42 PF05393 Hum_adeno_E3A: Human 51.0 35 0.00076 23.7 4.1 32 202-233 32-63 (94)
43 PRK14750 kdpF potassium-transp 47.8 45 0.00097 18.0 3.3 26 206-231 2-27 (29)
44 COG2386 CcmB ABC-type transpor 46.7 1.6E+02 0.0035 24.1 8.2 76 70-147 69-152 (221)
45 PF02439 Adeno_E3_CR2: Adenovi 42.5 69 0.0015 18.6 4.2 28 204-231 7-34 (38)
46 PHA03029 hypothetical protein; 36.8 1.3E+02 0.0029 20.2 5.3 44 66-113 35-81 (92)
47 PF06667 PspB: Phage shock pro 34.0 78 0.0017 21.4 3.7 24 209-232 8-31 (75)
48 PRK14748 kdpF potassium-transp 33.8 82 0.0018 17.0 3.4 26 207-232 3-28 (29)
49 PF05545 FixQ: Cbb3-type cytoc 33.7 71 0.0015 19.3 3.2 25 205-229 10-34 (49)
50 COG1668 NatB ABC-type Na+ effl 32.6 3.7E+02 0.0081 24.2 12.5 81 81-161 227-319 (407)
51 PF14710 Nitr_red_alph_N: Resp 30.4 25 0.00055 20.4 0.7 13 16-28 24-36 (38)
52 COG1115 AlsT Na+/alanine sympo 27.6 4.9E+02 0.011 24.0 9.7 34 69-102 117-152 (452)
53 TIGR02976 phageshock_pspB phag 27.3 1.1E+02 0.0024 20.6 3.6 20 213-232 12-31 (75)
54 COG4200 Uncharacterized protei 27.2 3.7E+02 0.008 22.4 14.3 144 73-229 76-233 (239)
55 PF12669 P12: Virus attachment 27.2 48 0.001 21.1 1.7 10 222-231 14-23 (58)
56 PF12725 DUF3810: Protein of u 23.9 2.3E+02 0.0049 24.7 5.8 34 77-110 3-36 (318)
57 PRK09458 pspB phage shock prot 22.4 1.5E+02 0.0032 20.1 3.4 23 210-232 9-31 (75)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.6e-38 Score=313.71 Aligned_cols=232 Identities=42% Similarity=0.756 Sum_probs=210.3
Q ss_pred ccchhccccccccccccCCcHHHHhhhcccccc-----------------------------------------------
Q 047475 2 MATWMLEVSSKSAEAQLGVDLARIYRDSALYDD----------------------------------------------- 34 (233)
Q Consensus 2 ~A~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~----------------------------------------------- 34 (233)
-||||+|+++++.+.+.+.||++.|++|++++.
T Consensus 1131 PAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p 1210 (1470)
T PLN03140 1131 PATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSP 1210 (1470)
T ss_pred chhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCH
Confidence 389999999987665556799999999876533
Q ss_pred --------------------------C---ccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHH
Q 047475 35 --------------------------N---QQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLA 85 (233)
Q Consensus 35 --------------------------~---~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~ 85 (233)
+ ..|++++.|++|+++++.++..+.+++|.+..||++|+|||++|+|++.+
T Consensus 1211 ~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~ 1290 (1470)
T PLN03140 1211 DYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALP 1290 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHH
Confidence 2 35788899999999999999888888899999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 047475 86 YALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLN 165 (233)
Q Consensus 86 y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~ 165 (233)
|++|++++|+|+.++.+++|.+|+|||+|+++++.+|++|++++++..+++.++|+++++++||..+|..+++++..+++
T Consensus 1291 y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~ 1370 (1470)
T PLN03140 1291 YAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFN 1370 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCC-----------Cee-------------------ecCCC--cccHHHHHHhHhCCcccchhhHHHHHHHH
Q 047475 166 LFSGFFILEPT-----------RKL-------------------RYFGE--TKTVAAFLKHCFGFDHDHLAITAIVLAIY 213 (233)
Q Consensus 166 lf~G~~i~~~~-----------~~l-------------------~~~g~--~~~~~~~l~~~~~~~~~~~~~~~~iL~~~ 213 (233)
+|+||++|+++ +|+ .|+|. ..+++++++++||++++++|+++++++++
T Consensus 1371 lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~ 1450 (1470)
T PLN03140 1371 LFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGF 1450 (1470)
T ss_pred HHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHH
Confidence 99999999888 111 12331 24678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q 047475 214 PIAFASLFASFIGRLNFQRR 233 (233)
Q Consensus 214 ~v~~~~l~~~~L~~~~~~kr 233 (233)
+++|++++++++|+.|+|||
T Consensus 1451 ~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1451 TVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999998
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.5e-33 Score=260.15 Aligned_cols=199 Identities=21% Similarity=0.286 Sum_probs=181.8
Q ss_pred CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475 35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE 114 (233)
Q Consensus 35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g 114 (233)
++++++++.|++|++.+..++.++...++.++.||++++||+++|+|++++|++||+++|+|..++.+++|.+|+|||+|
T Consensus 385 ~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~g 464 (617)
T TIGR00955 385 TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIG 464 (617)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheecc
Confidence 77899999999999998888888778889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475 115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------ 176 (233)
Q Consensus 115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------ 176 (233)
+++++.+|+.|++++++..+++.++|+++++++||...|..++++++.++++|+|+++++++
T Consensus 465 l~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~ 544 (617)
T TIGR00955 465 LRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGN 544 (617)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877
Q ss_pred -----Ce------eecCC-----CcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475 177 -----RK------LRYFG-----ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233 (233)
Q Consensus 177 -----~~------l~~~g-----~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr 233 (233)
|+ .+|++ .|...++++++.+|++.++.|.|+++|++++++|++++|++||++.+++|
T Consensus 545 ~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 545 EGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 11 13542 14223466778999999999999999999999999999999999888776
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.6e-33 Score=279.04 Aligned_cols=196 Identities=20% Similarity=0.207 Sum_probs=170.0
Q ss_pred CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhH-HhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhccc
Q 047475 35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVV-YWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMV 113 (233)
Q Consensus 35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~-~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~ 113 (233)
++.++|||.|++|+.+++.++. ..++++.|+.||.++ +||+++|+|++.+|++|++++|+|+.++.+++|.+|+||++
T Consensus 1122 ~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~ 1200 (1394)
T TIGR00956 1122 SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPV 1200 (1394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence 6889999999999987777665 356678999999996 89999999999999999999999999999999999999999
Q ss_pred ccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC----------
Q 047475 114 EYYGSVYK-------IFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT---------- 176 (233)
Q Consensus 114 gl~~~~~~-------f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~---------- 176 (233)
|+++++.. |+.+++++++..++++++|+++++++||..+|..+++++..++++|||+++|+++
T Consensus 1201 Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~ 1280 (1394)
T TIGR00956 1201 GFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYR 1280 (1394)
T ss_pred cccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHh
Confidence 99877654 9999999999999999999999999999999999999999999999999999877
Q ss_pred ------------------CeeecCC------------------------------------Cc----c-cHHHHHHhHhC
Q 047475 177 ------------------RKLRYFG------------------------------------ET----K-TVAAFLKHCFG 197 (233)
Q Consensus 177 ------------------~~l~~~g------------------------------------~~----~-~~~~~l~~~~~ 197 (233)
.++.|++ .| . ++.+++ +.++
T Consensus 1281 ~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l-~~~~ 1359 (1394)
T TIGR00956 1281 CSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFL-EPIS 1359 (1394)
T ss_pred cCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHH-HHcC
Confidence 1122310 13 2 456654 7889
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475 198 FDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233 (233)
Q Consensus 198 ~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr 233 (233)
++.++.|+|+++++++++++ ++++++|+++.+.+|
T Consensus 1360 ~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1360 SKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVPK 1394 (1394)
T ss_pred CcccccccchhhhhHHHHHH-HHHHHhhheEEEcCC
Confidence 99999999999999999999 888888888754443
No 4
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-33 Score=269.00 Aligned_cols=232 Identities=39% Similarity=0.589 Sum_probs=208.3
Q ss_pred ccchhccccccccccccCCcHHHHhhhcccccc-----------------------------------------------
Q 047475 2 MATWMLEVSSKSAEAQLGVDLARIYRDSALYDD----------------------------------------------- 34 (233)
Q Consensus 2 ~A~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~----------------------------------------------- 34 (233)
.|||||||+++++++..++||+++|++|+|++.
T Consensus 1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRs 1120 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRS 1120 (1391)
T ss_pred hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence 499999999999888888999999999999887
Q ss_pred ---------------------------CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHH
Q 047475 35 ---------------------------NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYA 87 (233)
Q Consensus 35 ---------------------------~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~ 87 (233)
+.+|+||..|++|.++++.+........+....||.+++||+++|+|++.+|.
T Consensus 1121 p~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~ 1200 (1391)
T KOG0065|consen 1121 PDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFA 1200 (1391)
T ss_pred cHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHH
Confidence 78999999999999988887776555557778888888999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 047475 88 LGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLF 167 (233)
Q Consensus 88 la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf 167 (233)
+|++++|+|+.++++.+|.+|+|+++|+..++.++++|++.++++.++..++|+++.+++||.+.|..+.+.+.....+|
T Consensus 1201 ~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F 1280 (1391)
T KOG0065|consen 1201 LAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLF 1280 (1391)
T ss_pred HHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCC-----------Ce-----------------eecC--C-------CcccHHHHHHhHhC----CcccchhhH
Q 047475 168 SGFFILEPT-----------RK-----------------LRYF--G-------ETKTVAAFLKHCFG----FDHDHLAIT 206 (233)
Q Consensus 168 ~G~~i~~~~-----------~~-----------------l~~~--g-------~~~~~~~~l~~~~~----~~~~~~~~~ 206 (233)
||+++|++. +| ..|. + ...+.+|++++.+| +..|.....
T Consensus 1281 ~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~ 1360 (1391)
T KOG0065|consen 1281 SGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATT 1360 (1391)
T ss_pred cccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCccee
Confidence 999999877 22 2353 1 12578999999998 777776667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475 207 AIVLAIYPIAFASLFASFIGRLNFQRR 233 (233)
Q Consensus 207 ~~iL~~~~v~~~~l~~~~L~~~~~~kr 233 (233)
-.+.+++.+.+..++.+++|+.+++||
T Consensus 1361 ~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1361 ACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred EEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 777888999999999999999998876
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.7e-32 Score=253.07 Aligned_cols=196 Identities=18% Similarity=0.176 Sum_probs=168.6
Q ss_pred CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475 35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE 114 (233)
Q Consensus 35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g 114 (233)
+++++++|.|++|+++++.++.++..+++.|+.||++++||+.+|+|++++|++||+++|+|+.++.+++|.+|+|||+|
T Consensus 431 ~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~G 510 (659)
T PLN03211 431 DFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCC
Confidence 67889999999999989988887778889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475 115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------ 176 (233)
Q Consensus 115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------ 176 (233)
+++++.+|+.|++++++..++++++|+++++++||...|+.++++++.++++|+||+++.-.
T Consensus 511 l~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~ea 590 (659)
T PLN03211 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRL 590 (659)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986111
Q ss_pred ---Ce----------eecCCC-cc-cHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047475 177 ---RK----------LRYFGE-TK-TVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNF 230 (233)
Q Consensus 177 ---~~----------l~~~g~-~~-~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~ 230 (233)
++ +.|++. |. +..-.+.+...++..+.|.|+++|+++.++|++++|++||+.+|
T Consensus 591 l~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 591 LINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 11 135321 10 00000122234445679999999999999999999999997664
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.98 E-value=1e-31 Score=268.56 Aligned_cols=194 Identities=19% Similarity=0.302 Sum_probs=178.2
Q ss_pred CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475 35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE 114 (233)
Q Consensus 35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g 114 (233)
|++++++|.|++|+++++.++.++.++ +.+..||++++||+++|+|++++|++|++++|+|+.++.+++|.+|+|||+|
T Consensus 446 ~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~g 524 (1394)
T TIGR00956 446 NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVN 524 (1394)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCC
Confidence 778999999999999999999887665 6778899999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475 115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------ 176 (233)
Q Consensus 115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------ 176 (233)
+++++++|+.|++++++..+++.++++++++++||...|+.+++++++++++|+||++|.++
T Consensus 525 l~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yaf 604 (1394)
T TIGR00956 525 FRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAF 604 (1394)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888
Q ss_pred -----C-----eeecC-----C-----------Cc-----------ccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHH
Q 047475 177 -----R-----KLRYF-----G-----------ET-----------KTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFAS 219 (233)
Q Consensus 177 -----~-----~l~~~-----g-----------~~-----------~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~ 219 (233)
| +++|+ | .| .+|.+++...|+++.++.|+|+++|+++.++|++
T Consensus 605 eal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~ 684 (1394)
T TIGR00956 605 ESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFF 684 (1394)
T ss_pred HHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHH
Confidence 1 23462 0 12 3677888778999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 047475 220 LFASFIGRLN 229 (233)
Q Consensus 220 l~~~~L~~~~ 229 (233)
++++++++.+
T Consensus 685 ~~~l~l~~~~ 694 (1394)
T TIGR00956 685 VYILLTEFNK 694 (1394)
T ss_pred HHHHHHHhcc
Confidence 9999999876
No 7
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.8e-30 Score=259.59 Aligned_cols=191 Identities=16% Similarity=0.207 Sum_probs=169.6
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccc
Q 047475 37 QNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYY 116 (233)
Q Consensus 37 ~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~ 116 (233)
.+.+.+.|++|+++++.++.++.+ ++.++.||++|+|||++++|++++|++|++++|+|..++.+++|.+|+|||+|++
T Consensus 565 ~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~ 643 (1470)
T PLN03140 565 EDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFA 643 (1470)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCC
Confidence 346778899999988888877655 5899999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC--------------------
Q 047475 117 GSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-------------------- 176 (233)
Q Consensus 117 ~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-------------------- 176 (233)
+++++|+.|++++++..+++.++++++++++||...|+.+++++++++++|+||++|+++
T Consensus 644 ~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~ea 723 (1470)
T PLN03140 644 PEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNA 723 (1470)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888
Q ss_pred ---Ceee--------cCCCc-ccHHHHHHhHhCCccc--chhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047475 177 ---RKLR--------YFGET-KTVAAFLKHCFGFDHD--HLAITAIVLAIYPIAFASLFASFIGRLN 229 (233)
Q Consensus 177 ---~~l~--------~~g~~-~~~~~~l~~~~~~~~~--~~~~~~~iL~~~~v~~~~l~~~~L~~~~ 229 (233)
|++. |.+.+ .+|.+++ +.+|++.+ ..|+++++|++++++|+++++++|++.+
T Consensus 724 l~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 724 LAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHhccCccccCcccCCCCcccHHHHH-HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2221 11222 3455555 88999865 4589999999999999999999999876
No 8
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.7e-29 Score=234.83 Aligned_cols=199 Identities=21% Similarity=0.322 Sum_probs=180.9
Q ss_pred CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475 35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE 114 (233)
Q Consensus 35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g 114 (233)
++.+++++.|++|+.+.++.+..+.++++.|+.||+++.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|
T Consensus 382 ~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~g 461 (613)
T KOG0061|consen 382 DAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVG 461 (613)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc
Confidence 67888899999999999998988888889999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC------------------
Q 047475 115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT------------------ 176 (233)
Q Consensus 115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~------------------ 176 (233)
++++..+|+.+.+++++..++++++|+++++..||...|..++++++.++++++|++++.++
T Consensus 462 l~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~ 541 (613)
T KOG0061|consen 462 LNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAF 541 (613)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887
Q ss_pred -----C-----eeecC----CCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475 177 -----R-----KLRYF----GETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233 (233)
Q Consensus 177 -----~-----~l~~~----g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr 233 (233)
+ ...|. ..|...++.++++.+++.++.|.|+.+++++.++|++++|++||++.+.+|
T Consensus 542 e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 542 EALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred HHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 1 11232 123344555568889999999999999999999999999999999876654
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=4.5e-27 Score=225.77 Aligned_cols=196 Identities=18% Similarity=0.283 Sum_probs=177.9
Q ss_pred CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc
Q 047475 35 NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE 114 (233)
Q Consensus 35 ~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g 114 (233)
+..|.+.|.|++||++++.++..+.++ +...+.|++++|||....|+++++.++..+.++|..++.+++|.+|.||++|
T Consensus 485 t~~~~~~~~~~lffsll~~~f~~laEi-~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~g 563 (1391)
T KOG0065|consen 485 TTSGGYSRGGALFFALLFNLFNGLAEI-ALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIG 563 (1391)
T ss_pred ccccchhhhhHHHHHHHHHHHHhHHHH-HHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999887665 8888999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----------Cee----
Q 047475 115 YYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----------RKL---- 179 (233)
Q Consensus 115 l~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----------~~l---- 179 (233)
+.+++++||.+++.++++..++.++..++++++++...|+.++++.++...+++||.+|.++ +|+
T Consensus 564 l~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~f 643 (1391)
T KOG0065|consen 564 LKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAF 643 (1391)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 221
Q ss_pred -------------ecC-----------------------CCc-ccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHH
Q 047475 180 -------------RYF-----------------------GET-KTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFA 222 (233)
Q Consensus 180 -------------~~~-----------------------g~~-~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~ 222 (233)
.|. |.. +.+.++++.+|++++.+.|+++++++|+.++|.++..
T Consensus 644 esl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ 723 (1391)
T KOG0065|consen 644 ESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFL 723 (1391)
T ss_pred HHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHH
Confidence 342 111 3566777788888999999999999999999999999
Q ss_pred HHHHhhhcc
Q 047475 223 SFIGRLNFQ 231 (233)
Q Consensus 223 ~~L~~~~~~ 231 (233)
+++.|++..
T Consensus 724 ia~~yl~p~ 732 (1391)
T KOG0065|consen 724 IALEYLKPL 732 (1391)
T ss_pred HHHHhcCcc
Confidence 999998743
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.30 E-value=5.6e-14 Score=113.35 Aligned_cols=155 Identities=25% Similarity=0.353 Sum_probs=132.9
Q ss_pred CcHHHHhhhcccc-cc--------------------CccchhhhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhhhcc
Q 047475 20 VDLARIYRDSALY-DD--------------------NQQNLFNIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWERFA 78 (233)
Q Consensus 20 ~~~~~~~~~s~~~-~~--------------------~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~ 78 (233)
|++.+.|||+... .. ++++..++.|.+........+....+......+||..+.||+.+
T Consensus 9 r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (210)
T PF01061_consen 9 REFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERGTLERERAS 88 (210)
T ss_pred HHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcccccccccc
Confidence 5777777777665 22 23333367888888877777565566657899999999999999
Q ss_pred CCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 047475 79 GMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSS 158 (233)
Q Consensus 79 g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~ 158 (233)
+.|++.+|.++|.+.+++...+.++++..+.+.+.|++.+ ++..+++.+.+..++..++|.+++.++++.+.+..+.+
T Consensus 89 ~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~ 166 (210)
T PF01061_consen 89 PLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISS 166 (210)
T ss_pred ccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999876 67778888888889999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCC
Q 047475 159 AYHTMLNLFSGFFILEPT 176 (233)
Q Consensus 159 ~~~~~~~lf~G~~i~~~~ 176 (233)
.+..+++++||.+.|.++
T Consensus 167 ~~~~~~~~~sg~~~p~~~ 184 (210)
T PF01061_consen 167 LILLLLFFLSGVFFPLSS 184 (210)
T ss_pred hcccccccceeeecchHH
Confidence 999999999999998776
No 11
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=98.85 E-value=1.7e-07 Score=76.12 Aligned_cols=144 Identities=15% Similarity=-0.008 Sum_probs=102.0
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047475 82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYH 161 (233)
Q Consensus 82 ~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~ 161 (233)
++..++++|.+...+..++++.+...+.|+..|++.. ++..+++.+++..+...++|..+++..++... .......
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence 5678899999999999999999999999998998763 56677778888889999999999999987654 3344455
Q ss_pred HHHHHhhcccccCCCCe--eecCC--Cccc-HHHHHHh-HhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047475 162 TMLNLFSGFFILEPTRK--LRYFG--ETKT-VAAFLKH-CFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLN 229 (233)
Q Consensus 162 ~~~~lf~G~~i~~~~~~--l~~~g--~~~~-~~~~l~~-~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~ 229 (233)
.+.+.++|.+.|.+.-| +..=. .+.+ .-|-+.+ .++-+..+.|.++++++++.+++.+++....|++|
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~~~~~~~~~~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGNDGTLWQAVAVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56777888888877711 11000 0101 1111111 12212346788999999999999999888877543
No 12
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.68 E-value=2.4e-06 Score=70.76 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=101.4
Q ss_pred CChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047475 81 YSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAY 160 (233)
Q Consensus 81 Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~ 160 (233)
-++..|+++|.+.+++..+++..+...+.++..+.+. ..+....+...+......++|.+++...+|.+.+..+.+.+
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~ 164 (236)
T TIGR01247 87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSML 164 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3678999999999999999999998888888776543 33444455555666777899999999999999999999999
Q ss_pred HHHHHHhhcccccCCCCe--ee----cCCCcccHHHHHHh-HhCCc-ccchhhHHHHHHHHHHHHHHHHHH
Q 047475 161 HTMLNLFSGFFILEPTRK--LR----YFGETKTVAAFLKH-CFGFD-HDHLAITAIVLAIYPIAFASLFAS 223 (233)
Q Consensus 161 ~~~~~lf~G~~i~~~~~~--l~----~~g~~~~~~~~l~~-~~~~~-~~~~~~~~~iL~~~~v~~~~l~~~ 223 (233)
..+...+||.+.|.+.-| +. +.. ....-|-..+ ..|-+ ..+.+.++++++.+.+++..++..
T Consensus 165 ~~~l~~lsG~~~P~~~~P~~~~~i~~~~P-~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 165 MLPMFFLSGAFYPITTMPAWMQGLAKINP-LTYAVDGARYYLAGVSPTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHhhcCHHhCHHHHHHHHHHCc-HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999977611 10 000 0011111211 12222 346778999999999999888764
No 13
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.62 E-value=5.2e-06 Score=69.73 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=102.8
Q ss_pred hHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 047475 71 VVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGML 142 (233)
Q Consensus 71 v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~ 142 (233)
.+.|||++|.+ ++..+.++|.+.+.-..+++.++...+.+ ..|..+. .+....+..+++..+...++|.+
T Consensus 81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~-~~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTA-TLGYIEW-WSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555553 67899999999887777777666555443 3344332 33444445556667777789999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHh-HhCCcccchhhHHHHH
Q 047475 143 LMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKH-CFGFDHDHLAITAIVL 210 (233)
Q Consensus 143 i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~-~~~~~~~~~~~~~~iL 210 (233)
++...++.+.+..+...+..+++..||.+.|.++ ||++ ..-|.+.+ .+|-+..+.+.+++++
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt------~~v~~~R~~~~g~~~~~~~~~~~~l 232 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLA------HSIDDIRPVMLGGPGTQVGLHLGAL 232 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHH------HHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999998777 2321 11222211 1232222456788999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 047475 211 AIYPIAFASLFASFIGRL 228 (233)
Q Consensus 211 ~~~~v~~~~l~~~~L~~~ 228 (233)
+++.+++..++....|++
T Consensus 233 ~~~~vv~~~la~~~fr~~ 250 (253)
T TIGR01291 233 CLYAVVPFFISAALLRRR 250 (253)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999888888777654
No 14
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.45 E-value=2.2e-05 Score=64.88 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=92.5
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHH
Q 047475 82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTP---NYMVAAILSS 158 (233)
Q Consensus 82 ~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~---~~~~a~~~~~ 158 (233)
++..|+++|.+.+.+..+++..+.. +.++..|++.... ....+....+....+..++.+++.+.+ +.+.+..+..
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 7899999999988888877765555 4456778875433 233344444555666677777777774 4455577888
Q ss_pred HHHHHHHHhhcccccCCCCe--eec--CCCcc-cHHHHHHhHh--CCcccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 047475 159 AYHTMLNLFSGFFILEPTRK--LRY--FGETK-TVAAFLKHCF--GFDHDHLAITAIVLAIYPIAFASLFASFIGR 227 (233)
Q Consensus 159 ~~~~~~~lf~G~~i~~~~~~--l~~--~g~~~-~~~~~l~~~~--~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~ 227 (233)
.+..+..++||.+.|.+.-| +.- .-.+. -.-|-+.+.. +-+....+.++++++++.+++..++....||
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSVDTFGAVRDLVVVLAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899999999999988711 100 00000 1111121211 2233456889999999999988887776653
No 15
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.34 E-value=8.9e-07 Score=64.15 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=43.9
Q ss_pred ccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475 186 KTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 186 ~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~k 232 (233)
++|.+|+...|+++.+++|+|++|+++++++|.++.++++++.+.+|
T Consensus 31 V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 31 VSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred EeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 68999999899999999999999999999999999999999887654
No 16
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.25 E-value=0.00016 Score=60.49 Aligned_cols=152 Identities=9% Similarity=-0.080 Sum_probs=96.0
Q ss_pred hHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 047475 71 VVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNY 150 (233)
Q Consensus 71 v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~ 150 (233)
...|=+.... ++..+.++|.+.+.-..+++..+...+.+. .|.+.+...+......+.+......++|.+++...++.
T Consensus 90 ~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~ 167 (253)
T TIGR03861 90 SMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQL 167 (253)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3333343333 788899999999988877776665555442 35554433344444455556677779999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCeeecCC--------Ccc-cHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHH
Q 047475 151 MVAAILSSAYHTMLNLFSGFFILEPTRKLRYFG--------ETK-TVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLF 221 (233)
Q Consensus 151 ~~a~~~~~~~~~~~~lf~G~~i~~~~~~l~~~g--------~~~-~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~ 221 (233)
+....+.+.+..+++..||.+.|.+.-| +.|+ ++. ..-|...+.+ ..+.-|.+++++.++.+++..++
T Consensus 168 ~~~~~i~~~~~~~l~flSgi~~p~~~~~-~~p~~l~~i~~~nPl~~~i~~~R~~~--~g~~~~~~~~~~~~~~~v~~~~~ 244 (253)
T TIGR03861 168 ENFAGVMNFVIFPMFFLSSALYPLWKMQ-EASTWLYWICALNPFTHAVELVRFAL--YGQLNLPALGWTLGATTLFTLLA 244 (253)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhcc-cccHHHHHHHHhCcHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHHHHHH
Confidence 8888888888999999999988865411 0110 010 1111111111 11123667788888888888777
Q ss_pred HHHHHh
Q 047475 222 ASFIGR 227 (233)
Q Consensus 222 ~~~L~~ 227 (233)
....|+
T Consensus 245 ~~~fr~ 250 (253)
T TIGR03861 245 FWGFDP 250 (253)
T ss_pred HHHhhc
Confidence 766654
No 17
>PRK15066 inner membrane transport permease; Provisional
Probab=98.14 E-value=0.00042 Score=58.21 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=93.9
Q ss_pred CChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047475 81 YSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAY 160 (233)
Q Consensus 81 Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~ 160 (233)
-++..+.+++++...-...+...+...+.+...|.+.. ........+++........|.+++...++.+....+.+.+
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 37788999999887766666665555554444455432 2222333333333333345888888888888888899999
Q ss_pred HHHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 047475 161 HTMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLN 229 (233)
Q Consensus 161 ~~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~ 229 (233)
..+.+..||.+.|.++ ||++ ...++-+.. -.|.+..+.|.++++++++.+++..++....|+.+
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt---~~v~~~R~~--~~g~~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIV---YMVNAFRYG--FLGISDVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHH---HHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999988766 2321 001111111 11322335688999999999999999999888766
Q ss_pred ccc
Q 047475 230 FQR 232 (233)
Q Consensus 230 ~~k 232 (233)
+-|
T Consensus 254 ~~~ 256 (257)
T PRK15066 254 GLR 256 (257)
T ss_pred ccC
Confidence 554
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.12 E-value=0.00036 Score=58.26 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=95.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHH
Q 047475 84 LAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLM-LLTPNYMVAAILSSAYHT 162 (233)
Q Consensus 84 ~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~-~~~~~~~~a~~~~~~~~~ 162 (233)
..+++++.+.......+...+...+..+..|. .....+........+......++|.+++ ...++.+.+..+...+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55666666666555555555555555555663 2344556566666667777778888665 366778888888889999
Q ss_pred HHHHhhcccccCCCCe--eecCCC--cc-cHHHHHHhHh--CCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047475 163 MLNLFSGFFILEPTRK--LRYFGE--TK-TVAAFLKHCF--GFDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQ 231 (233)
Q Consensus 163 ~~~lf~G~~i~~~~~~--l~~~g~--~~-~~~~~l~~~~--~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~ 231 (233)
++..++|.+.|.+.-| +..-+. +. -.-|.+.+.+ +-..++.+.++.+++++.+++.+++...+|+.+++
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999988722 110001 11 1222222222 22233478999999999999999999999876554
No 19
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=97.41 E-value=0.0031 Score=48.79 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=73.1
Q ss_pred hhhhhhhhHHhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHH---HHHHHHHHHH
Q 047475 64 YVQTELTVVYWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMML---CSLLYYNYLG 140 (233)
Q Consensus 64 ~f~~er~v~~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~---l~~~~~~~~g 140 (233)
..-+|+..+.|-+.+-. ++..++++|.+...-..+++..+...+.+. .|.+.+. .+......+. +.......++
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~ 89 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV 89 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777776 899999999999999999888877777754 4877653 3332333332 3333344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC
Q 047475 141 MLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT 176 (233)
Q Consensus 141 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ 176 (233)
..++...++.+. ......+..+....||.+.|.++
T Consensus 90 ~~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~ 124 (152)
T TIGR01248 90 MAMALRKEGRFA-MEALELAQAAAAFLNPGATPIKL 124 (152)
T ss_pred HHHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHh
Confidence 555555565544 44457777888888998888776
No 20
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=97.18 E-value=0.00092 Score=43.95 Aligned_cols=47 Identities=19% Similarity=0.125 Sum_probs=39.9
Q ss_pred ccHHHHHHhHhCCcccc--hhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475 186 KTVAAFLKHCFGFDHDH--LAITAIVLAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 186 ~~~~~~l~~~~~~~~~~--~~~~~~iL~~~~v~~~~l~~~~L~~~~~~k 232 (233)
.+.++.+++..|+..++ .|..+++|+|+.++|.++..++|.|++...
T Consensus 10 ~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~ 58 (65)
T PF08370_consen 10 STLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG 58 (65)
T ss_pred CcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 46677778899998775 567899999999999999999999997544
No 21
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.11 E-value=0.023 Score=47.67 Aligned_cols=157 Identities=14% Similarity=0.088 Sum_probs=86.4
Q ss_pred hHHhhhccCC--------CChHHHHHHHHhhhhhHHH---HHHHHHhhh--hhc-ccccccchhHHHHHHHHHHHHHH--
Q 047475 71 VVYWERFAGM--------YSPLAYALGQIIAEVPYIF---FQTGIFIMV--TYP-MVEYYGSVYKIFCYFYMMLCSLL-- 134 (233)
Q Consensus 71 v~~rE~~~g~--------Y~~~~y~la~~l~elp~~~---~~~~i~~~i--~Y~-~~gl~~~~~~f~~~~~~~~l~~~-- 134 (233)
.+-+|+++|. .++..++++|.+......+ +...+-..+ ... ..|.+.+...+...........+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4467777776 5889999999999877632 211111111 111 12333344444443333333333
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc---cCCC-Ceeec-C----CCcccHHHHHHhHhCCcc----
Q 047475 135 -YYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFI---LEPT-RKLRY-F----GETKTVAAFLKHCFGFDH---- 200 (233)
Q Consensus 135 -~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i---~~~~-~~l~~-~----g~~~~~~~~l~~~~~~~~---- 200 (233)
...+++.++++..+|...|...+..+............ .... .+... + -.+.+.-+...+ ...+.
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~ 247 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPFNLLIG-SILGGGFVW 247 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHHHHHHH-Hhhccccch
Confidence 45889999999999988888877776655543333222 1111 11000 0 001111111111 11111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047475 201 DHLAITAIVLAIYPIAFASLFASFIGRL 228 (233)
Q Consensus 201 ~~~~~~~~iL~~~~v~~~~l~~~~L~~~ 228 (233)
...|.+.++++++.+++..+++...+++
T Consensus 248 ~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 248 LSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3578889999999999999999666543
No 22
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.00 E-value=0.031 Score=46.55 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=81.5
Q ss_pred hhHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHH---HHhhhhhcccccc---cchhHHHHHHHHHHHHHHH
Q 047475 70 TVVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTG---IFIMVTYPMVEYY---GSVYKIFCYFYMMLCSLLY 135 (233)
Q Consensus 70 ~v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~---i~~~i~Y~~~gl~---~~~~~f~~~~~~~~l~~~~ 135 (233)
..+.|||++|+. ++...+++|.+.-.-...+... ++...... .|.+ .+.+.+...++..++....
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ 149 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQ-LGNPVGNLDIGSTFGSYIGLLLLGSV 149 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCccccccHHHHHHHHHHHHHHHHH
Confidence 455788888885 6789999999887654433222 11111111 1221 2344555455555666677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccC--CC--CeeecCCCcccHHHHHHhHhCCcccchhhHHHHHH
Q 047475 136 YNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILE--PT--RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLA 211 (233)
Q Consensus 136 ~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~--~~--~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~ 211 (233)
..++|.+++++.+|...|..++..+...+.+.-+...+. ++ +.+ ...+..+...+ +. +..-.+.|+...+
T Consensus 150 ~~aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l----~~~sp~~~~~~-~~-~g~i~~~~~v~~~ 223 (240)
T TIGR03518 150 YTAIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASLLWGGSAYTI----SELGLSYHYES-IS-RGVIDSRDVIYFL 223 (240)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHH----HHcCHHHHHHH-HH-cCcccHhHHHHHH
Confidence 789999999999998888665554433222211222111 11 000 00122111111 11 1111267888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 047475 212 IYPIAFASLFASFIGR 227 (233)
Q Consensus 212 ~~~v~~~~l~~~~L~~ 227 (233)
.+++++..++...+++
T Consensus 224 ~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 224 SITVLFLALTKLQLKS 239 (240)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887766653
No 23
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=96.66 E-value=0.0005 Score=58.76 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhhhhhhhHHhhh--ccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccc---cccchhHHHHHHHHHHHHHHHHHH
Q 047475 64 YVQTELTVVYWER--FAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVE---YYGSVYKIFCYFYMMLCSLLYYNY 138 (233)
Q Consensus 64 ~f~~er~v~~rE~--~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~g---l~~~~~~f~~~~~~~~l~~~~~~~ 138 (233)
...+||+-=.+|| .+|. ++..|.++|++......++..++...+ ..| ++. .++...++.+++..+...+
T Consensus 181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~ 254 (344)
T PF12698_consen 181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFIS 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHH
Confidence 4455555444443 5554 889999999999998888887776664 344 432 3555556777778888889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----Ceeec--CCCc-ccHHHHHHhHhCCcccchhhHHHHH
Q 047475 139 LGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----RKLRY--FGET-KTVAAFLKHCFGFDHDHLAITAIVL 210 (233)
Q Consensus 139 ~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----~~l~~--~g~~-~~~~~~l~~~~~~~~~~~~~~~~iL 210 (233)
++.+++.++++...+..+.+++..+....+|...|.++ +.+.+ |... ..+-..+. +|- ..+.|.+++++
T Consensus 255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~--~~~-~~~~~~~~~~l 331 (344)
T PF12698_consen 255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNII--YGD-WSEIWISLIIL 331 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHH--Hhc-HHHHHHHHHHH
Confidence 99999999999999988888887766666665555443 11111 1100 11111111 221 23567888889
Q ss_pred HHHHHHHHHHHH
Q 047475 211 AIYPIAFASLFA 222 (233)
Q Consensus 211 ~~~~v~~~~l~~ 222 (233)
++..+++.+++.
T Consensus 332 ~~~~~v~~~l~~ 343 (344)
T PF12698_consen 332 LLFAVVYLLLAI 343 (344)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
No 24
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.65 Score=39.32 Aligned_cols=141 Identities=9% Similarity=0.067 Sum_probs=89.0
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047475 82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYH 161 (233)
Q Consensus 82 ~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~ 161 (233)
++..+.+++++.++-...+..++.....-+..+.+ ..++......+.+..+.+.++|.+++.++.-..--..+...++
T Consensus 106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~ 183 (263)
T COG1682 106 PPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL 183 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence 78899999999988777666655544444333332 3445555666777778888889999988866555566666777
Q ss_pred HHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047475 162 TMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFASLFASFIGRLNF 230 (233)
Q Consensus 162 ~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~ 230 (233)
-+.+..+|.+-|.+. ||+. ..-|-+.+-+=-+....+.+....+...++...+++...|+.+|
T Consensus 184 ~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~------~iie~~R~~~~~~~~~~~~~~~~~~~~~li~l~vg~~~~~~~~~ 257 (263)
T COG1682 184 QLLFFLSPIIYPVSNLPEQLRELVLLNPLT------HIIESFRAPLLGGDVPDLHLLVYILLLTLILLFVGLLLFRKFRK 257 (263)
T ss_pred HHHHHhCceeeehhhccHHHHHHHHHCcHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778888888777666 3331 11111111110012224556777777777777888888876554
No 25
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=95.92 E-value=0.16 Score=41.56 Aligned_cols=133 Identities=16% Similarity=0.075 Sum_probs=76.3
Q ss_pred hhHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 047475 70 TVVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGM 141 (233)
Q Consensus 70 ~v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~ 141 (233)
..|.+|+++|.. ++...+++|.+...-...+...+..-+...+.|.+. .+...+.+.+.+-...-...|-
T Consensus 66 r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igt 143 (215)
T PF03379_consen 66 RSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGT 143 (215)
T ss_pred HhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHH
Confidence 347888888872 467889999999877665555444444444556543 3445555555555555556666
Q ss_pred HHHHhcCChHHHHHHHHHH----HHHHHHhhcccccCCCCeeecCCCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHH
Q 047475 142 LLMLLTPNYMVAAILSSAY----HTMLNLFSGFFILEPTRKLRYFGETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAF 217 (233)
Q Consensus 142 ~i~~~~~~~~~a~~~~~~~----~~~~~lf~G~~i~~~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~ 217 (233)
+.+++.-+......+.+++ .+|.++++- ...+... +..+.+.....+.++.+++
T Consensus 144 l~aal~~~~r~~~~Ll~lL~lPl~iPvli~~~-----------------~~t~~~~-----~g~~~~~~l~lL~a~~~~~ 201 (215)
T PF03379_consen 144 LLAALAAGARGREILLPLLLLPLLIPVLIFAV-----------------QATTAAL-----TGLDFWGWLALLGAYDLIF 201 (215)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHHHHHHHH-----------------HHHHHHh-----cCCChHHHHHHHHHHHHHH
Confidence 6666654333333333333 344444432 1111111 1145666777888888888
Q ss_pred HHHHHHHHH
Q 047475 218 ASLFASFIG 226 (233)
Q Consensus 218 ~~l~~~~L~ 226 (233)
..++.+...
T Consensus 202 ~~l~~~~~~ 210 (215)
T PF03379_consen 202 LALSPFLFA 210 (215)
T ss_pred HHHHHHHHH
Confidence 777766544
No 26
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=95.24 E-value=1.6 Score=36.89 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHhHhC
Q 047475 129 MLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKHCFG 197 (233)
Q Consensus 129 ~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~~~~ 197 (233)
..+..+.+.++|.+++++..-..-...+.+.++.+.+..+|.+-+.+. ||+. ..-|...+.+=
T Consensus 155 ~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~------~~ie~~R~~~~ 228 (264)
T PRK15176 155 MVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLL------HANEIVREGMF 228 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHH------HHHHHHHHHHh
Confidence 344556666777777776643333444555666677777886655443 3331 11111111111
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475 198 FDHDHLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233 (233)
Q Consensus 198 ~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr 233 (233)
-+....+.+....+++.++..++++...|+.|.++|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 264 (264)
T PRK15176 229 EGYHSLYLEPFYPLAFSATLFLAGLIFHLICDTENH 264 (264)
T ss_pred cCcCccccChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 011223456688888999999999999998888765
No 27
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=95.13 E-value=0.9 Score=38.16 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=95.8
Q ss_pred hhHHhhhccCC--------CChHHHHHHHHhhhhhHHHHHHHHHh---hhhhccccccc---chhHHHHHHHHHHHHHHH
Q 047475 70 TVVYWERFAGM--------YSPLAYALGQIIAEVPYIFFQTGIFI---MVTYPMVEYYG---SVYKIFCYFYMMLCSLLY 135 (233)
Q Consensus 70 ~v~~rE~~~g~--------Y~~~~y~la~~l~elp~~~~~~~i~~---~i~Y~~~gl~~---~~~~f~~~~~~~~l~~~~ 135 (233)
.++-+|+++|+ .++.--+.+|.+.-+-...+..++.. ...+...|... +..+...+.....+....
T Consensus 81 ~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (278)
T COG1277 81 DLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLV 160 (278)
T ss_pred chhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH
Confidence 45578888888 46778888998887665544444433 11222333333 333556666677777888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC----------CeeecCCCcccHHHHHHhHhC--------
Q 047475 136 YNYLGMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT----------RKLRYFGETKTVAAFLKHCFG-------- 197 (233)
Q Consensus 136 ~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~----------~~l~~~g~~~~~~~~l~~~~~-------- 197 (233)
-.+.+.+++...++...+..++..+.....+..+....... +.+..........+.....++
T Consensus 161 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (278)
T COG1277 161 LLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAFTILLQSGFSDSI 240 (278)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHHHhhhhcccccccccc
Confidence 88899999999999988888888777666655544332100 001110000000010001111
Q ss_pred --C--cccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047475 198 --F--DHDHLAITAIVLAIYPIAFASLFASFIGRL 228 (233)
Q Consensus 198 --~--~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~ 228 (233)
. .....|.+..++.++.+.+..++++..+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~ 275 (278)
T COG1277 241 LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRR 275 (278)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 123577889999999999999998887654
No 28
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=94.36 E-value=1.8 Score=46.89 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=72.0
Q ss_pred hccchhhhhhhhHHhhhc--cCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHH
Q 047475 60 LVLPYVQTELTVVYWERF--AGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYN 137 (233)
Q Consensus 60 ~~~~~f~~er~v~~rE~~--~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~ 137 (233)
.++.....||..-.||.- -|+ +.+.|.+|.++..+...++.+++.+++... ..+ -..++++..++.++++.+...
T Consensus 669 ~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~~-~~~-~~~s~~~~lfl~~~~y~~s~I 745 (2272)
T TIGR01257 669 MTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIMH-GRI-LHYSDPFILFLFLLAFSTATI 745 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-Cce-eecCChHHHHHHHHHHHHHHH
Confidence 344677888888888844 344 678888999888876666555444443221 111 122344555666777788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 047475 138 YLGMLLMLLTPNYMVAAILSSAYHTMLNL 166 (233)
Q Consensus 138 ~~g~~i~~~~~~~~~a~~~~~~~~~~~~l 166 (233)
.++.++++++.+...|..+++++.....+
T Consensus 746 ~~~fliS~fFska~~A~~~~~li~f~~~l 774 (2272)
T TIGR01257 746 MQCFLLSTFFSKASLAAACSGVIYFTLYL 774 (2272)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888766544
No 29
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=93.59 E-value=1.9 Score=35.23 Aligned_cols=79 Identities=10% Similarity=-0.064 Sum_probs=46.5
Q ss_pred hhhHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Q 047475 69 LTVVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLG 140 (233)
Q Consensus 69 r~v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g 140 (233)
...|.+|+++|.. +....+++|.+...-...+.-.+..-..-.+.|++. .......+.+.+-...-...|
T Consensus 62 ~rlF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~ig 139 (211)
T TIGR01190 62 DRLFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLG 139 (211)
T ss_pred hHHHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999973 668889999988765544433333333333455543 333444555555555555566
Q ss_pred HHHHHhcCC
Q 047475 141 MLLMLLTPN 149 (233)
Q Consensus 141 ~~i~~~~~~ 149 (233)
-+.+++.-+
T Consensus 140 tl~aALt~g 148 (211)
T TIGR01190 140 AIGAALTVG 148 (211)
T ss_pred HHHHHHHHh
Confidence 666666543
No 30
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=92.63 E-value=2.6 Score=45.72 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=70.7
Q ss_pred chhhhhhhhHHh--hhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhccc--ccccchhHHHHHHHHHHHHHHHHHH
Q 047475 63 PYVQTELTVVYW--ERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMV--EYYGSVYKIFCYFYMMLCSLLYYNY 138 (233)
Q Consensus 63 ~~f~~er~v~~r--E~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~--gl~~~~~~f~~~~~~~~l~~~~~~~ 138 (233)
.....||.-=.| +.-+|. +..+|-+++.+.|+...++..+++..+++..- ++. +...+...+++++++.+...-
T Consensus 1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257 1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHH
Confidence 345566665544 466777 88999999999999998888777776655321 122 334566666778888899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 047475 139 LGMLLMLLTPNYMVAAILSSAYH 161 (233)
Q Consensus 139 ~g~~i~~~~~~~~~a~~~~~~~~ 161 (233)
+.++++.+++++..|......+.
T Consensus 1777 ~tYl~SflF~~~~~A~~~~~~in 1799 (2272)
T TIGR01257 1777 MMYPASFLFDVPSTAYVALSCAN 1799 (2272)
T ss_pred HHHHHHHhhCCchhHHHHHHHHH
Confidence 99999999999998876655443
No 31
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=90.58 E-value=4.8 Score=31.61 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=52.6
Q ss_pred hHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhh---hcccccc-cchh---HHH-HHHHHHHHHHH
Q 047475 71 VVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVT---YPMVEYY-GSVY---KIF-CYFYMMLCSLL 134 (233)
Q Consensus 71 v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~---Y~~~gl~-~~~~---~f~-~~~~~~~l~~~ 134 (233)
.+.+|+++|++ ++..++.+|.++..-...+..++...+. ..+.+.. .+.. +.. .+.+.......
T Consensus 69 ~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (232)
T PF12730_consen 69 LFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSL 148 (232)
T ss_pred HHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHH
Confidence 44577777763 7899999999998777655554433332 2233321 1222 222 23333334444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 047475 135 YYNYLGMLLMLLTPNYMVAAILSSAYHTMLNL 166 (233)
Q Consensus 135 ~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l 166 (233)
....+ .+++...+|...+..+.........+
T Consensus 149 ~~~~~-~~i~~~~~~~~~~i~~~~~~~~~~~~ 179 (232)
T PF12730_consen 149 FISLL-LFISSLFRNSIVAIIISILLFLLGII 179 (232)
T ss_pred HHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44455 78888888877665554444443333
No 32
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=77.86 E-value=38 Score=28.03 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=42.2
Q ss_pred CChHHHHHHHHhhhhhHHHHHHHHHhhhhhc----cccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047475 81 YSPLAYALGQIIAEVPYIFFQTGIFIMVTYP----MVEY-YGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPN 149 (233)
Q Consensus 81 Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~----~~gl-~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~ 149 (233)
.++..+++||++.-+-..++...+...+... ..+. +.+...+....+.+++..+....+.+.++....+
T Consensus 85 ~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~ 158 (248)
T TIGR03733 85 KSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM 158 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4778999999998766665544432222221 1111 1233455555556667777777888888888875
No 33
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=76.07 E-value=30 Score=34.52 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=79.5
Q ss_pred hhhhhHHHHHHHHHHHhhhhccchhhhhhhhHHhh--hccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccc
Q 047475 41 NIHGSLSAAVIFSGLINCTLVLPYVQTELTVVYWE--RFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGS 118 (233)
Q Consensus 41 ~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE--~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~ 118 (233)
+..+..++...+....+ ........||.--.|+ .-+|+ ++++|.++..+.|+...++...+...+.+.. |+ ..
T Consensus 297 ~~~~~~~~~~~~~~~~~--~~~~~li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f-~~-~~ 371 (885)
T KOG0059|consen 297 DLLGALFLLFVFLLLFS--VFLLSLILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIF-GF-FA 371 (885)
T ss_pred HHHHHHHHHHHHHHHhH--HHHhHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhee-ec-cc
Confidence 34455554433333322 2224566777666654 66777 8899999999999999888777766665543 22 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 047475 119 VYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAILSSAYHTMLNL 166 (233)
Q Consensus 119 ~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~~~~~~~~~~~l 166 (233)
..++....+...+.......+..+.+..++....+.....++.....+
T Consensus 372 ~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~~~s~~ 419 (885)
T KOG0059|consen 372 GNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYNLISGL 419 (885)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHHHHHHH
Confidence 344455555666677777889999999999888888776666554443
No 34
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.20 E-value=55 Score=27.54 Aligned_cols=85 Identities=12% Similarity=-0.033 Sum_probs=55.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCC-----------CeeecCCCcccHHHHHHhHhCCcccchhhHHH
Q 047475 140 GMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPT-----------RKLRYFGETKTVAAFLKHCFGFDHDHLAITAI 208 (233)
Q Consensus 140 g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~-----------~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 208 (233)
-..+++++--.+-|+.+.-....+..+.||.+.|.+- .|+ |-.-.++-..+... .+.+..+.+.+
T Consensus 164 ~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~~v~~il~ftPF--py~~y~P~~llvGk--~s~~~il~al~ 239 (268)
T COG4587 164 QFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPDWVRAILAFTPF--PYLLYTPVMLLVGK--YSGAQILKALL 239 (268)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChHHHHHHHHhCCc--hhhhccHHHHHhcc--ccHHHHHHHHH
Confidence 3444444433466788888888889999999998665 222 21111233333222 13457889999
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 047475 209 VLAIYPIAFASLFASFIGRL 228 (233)
Q Consensus 209 iL~~~~v~~~~l~~~~L~~~ 228 (233)
+.+++..++..+.-...|+.
T Consensus 240 v~~~Wl~im~~l~~~lWrrg 259 (268)
T COG4587 240 VQIGWLLIMWLLSRWLWRRG 259 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877753
No 35
>COG1511 Predicted membrane protein [Function unknown]
Probab=71.99 E-value=85 Score=30.94 Aligned_cols=145 Identities=12% Similarity=-0.043 Sum_probs=79.3
Q ss_pred hccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 047475 76 RFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGMLLMLLTPNYMVAAI 155 (233)
Q Consensus 76 ~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~~i~~~~~~~~~a~~ 155 (233)
...+.+...-|++++.++.+-....+..+-..--+.+.|...... +.+++..+.+.++...+-..+.+++.+ .+-.
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~~~--~~~~~~~i~~s~~f~~ii~~lv~~~g~--~g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVKSP--LLLVLFAIFSSVAFMIIIYLLVSLFGN--PGKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccCch--hHHHHHHHHHHHHHHHHHHHHHHHhCc--chHH
Confidence 566777888899999888888888888777777777777765332 333333333344444444444455554 4444
Q ss_pred HHHHHHHHHHHhhcccccCCCCe-----ee--cCC-CcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHHH-HHHHHHH
Q 047475 156 LSSAYHTMLNLFSGFFILEPTRK-----LR--YFG-ETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFAS-LFASFIG 226 (233)
Q Consensus 156 ~~~~~~~~~~lf~G~~i~~~~~~-----l~--~~g-~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~~-l~~~~L~ 226 (233)
+..+++.+.+..+|=.-|....| +. -|- ..+.+-+. ...+......|.+..++.++.+.|++ ..++.+.
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~~~~~l~~~lp~ty~v~~~r~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 763 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTYAVNGFRE--VIGGPIPSNLWSGLLALIGFLILFIIGGLFLKLP 763 (780)
T ss_pred HHHHHHHHHHhccccccchhccHHHHHHHHHhccHHHHHHHhHH--hhccCchHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666665443433311 00 000 00111111 11233345677788888877777777 3344443
No 36
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=64.57 E-value=80 Score=26.08 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=38.0
Q ss_pred HhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhc---cccccc-chhHHHHHHHHHHHHHHHHHHHH
Q 047475 73 YWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYP---MVEYYG-SVYKIFCYFYMMLCSLLYYNYLG 140 (233)
Q Consensus 73 ~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~---~~gl~~-~~~~f~~~~~~~~l~~~~~~~~g 140 (233)
.+|+++|.| ++...++||.+.-.-..++..++.....+. ..|..+ +...+....+..++..+....+-
T Consensus 64 ~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~ 143 (241)
T TIGR03732 64 KKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLC 143 (241)
T ss_pred HHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666554 668889999988766655555544433222 223111 22233333344444444444555
Q ss_pred HHHHH
Q 047475 141 MLLML 145 (233)
Q Consensus 141 ~~i~~ 145 (233)
..++.
T Consensus 144 l~ls~ 148 (241)
T TIGR03732 144 LFLAR 148 (241)
T ss_pred HHHHH
Confidence 55543
No 37
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.56 E-value=13 Score=27.68 Aligned_cols=29 Identities=10% Similarity=-0.237 Sum_probs=17.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047475 202 HLAITAIVLAIYPIAFASLFASFIGRLNF 230 (233)
Q Consensus 202 ~~~~~~~iL~~~~v~~~~l~~~~L~~~~~ 230 (233)
-.+..+++++|++..-.+++|++.|++||
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35667888888877666665555544444
No 38
>PTZ00046 rifin; Provisional
Probab=61.88 E-value=9.4 Score=33.69 Aligned_cols=30 Identities=0% Similarity=0.093 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475 202 HLAITAIVLAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 202 ~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~k 232 (233)
.+-..++.++.+.++..++ |+.|||+|+.|
T Consensus 316 aIiaSiiAIvVIVLIMvII-YLILRYRRKKK 345 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVII-YLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhhcch
Confidence 4445566666666666555 99999998765
No 39
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=61.00 E-value=10 Score=33.32 Aligned_cols=30 Identities=7% Similarity=0.095 Sum_probs=20.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475 202 HLAITAIVLAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 202 ~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~k 232 (233)
.+-..++.++.+.++..++ |+.|||+|+.|
T Consensus 311 ~IiaSiIAIvvIVLIMvII-YLILRYRRKKK 340 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVII-YLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhhcch
Confidence 4455566666666666555 99999998765
No 40
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=57.43 E-value=14 Score=31.89 Aligned_cols=28 Identities=7% Similarity=0.082 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475 204 AITAIVLAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 204 ~~~~~iL~~~~v~~~~l~~~~L~~~~~~k 232 (233)
...+++++.+.++..++ |+.|||+|+.|
T Consensus 259 ~aSiiaIliIVLIMvII-YLILRYRRKKK 286 (299)
T PF02009_consen 259 IASIIAILIIVLIMVII-YLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 34455555555555555 88999988655
No 41
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=54.45 E-value=1.6e+02 Score=26.20 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=39.1
Q ss_pred ChHHHHHHHHhhhhhHHHHHHHHHhhhhhccccccc--ch--hHHHHHHHHHHHHHHH
Q 047475 82 SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYG--SV--YKIFCYFYMMLCSLLY 135 (233)
Q Consensus 82 ~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~--~~--~~f~~~~~~~~l~~~~ 135 (233)
+...+.+-|.+......++.++.|+.+. +..+.+- .. +.|..+|...++....
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a 296 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSA 296 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHH
Confidence 7788999999999999999999998887 4555433 22 4588888777654433
No 42
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=51.01 E-value=35 Score=23.73 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 047475 202 HLAITAIVLAIYPIAFASLFASFIGRLNFQRR 233 (233)
Q Consensus 202 ~~~~~~~iL~~~~v~~~~l~~~~L~~~~~~kr 233 (233)
++...+++..+++++..++-++|-+.+++-+|
T Consensus 32 ~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 34445777788888888887887776665544
No 43
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=47.83 E-value=45 Score=17.99 Aligned_cols=26 Identities=8% Similarity=-0.102 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047475 206 TAIVLAIYPIAFASLFASFIGRLNFQ 231 (233)
Q Consensus 206 ~~~iL~~~~v~~~~l~~~~L~~~~~~ 231 (233)
++.++.+..+++..++|++....|-+
T Consensus 2 s~~vi~g~llv~lLl~YLvYAL~naE 27 (29)
T PRK14750 2 NFSIVCGALLVLLLLGYLVYALFNAE 27 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 56788888899999999988776654
No 44
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=46.72 E-value=1.6e+02 Score=24.12 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=42.2
Q ss_pred hhHHhhhccCCC--------ChHHHHHHHHhhhhhHHHHHHHHHhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 047475 70 TVVYWERFAGMY--------SPLAYALGQIIAEVPYIFFQTGIFIMVTYPMVEYYGSVYKIFCYFYMMLCSLLYYNYLGM 141 (233)
Q Consensus 70 ~v~~rE~~~g~Y--------~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~gl~~~~~~f~~~~~~~~l~~~~~~~~g~ 141 (233)
..|.+|+++|.- ....-+.+|.++..-.+.+.-++-.=+.+-+.+++ ...+....+++.+..-.-...|-
T Consensus 69 rlF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~--~~~~~~~~ltLllGtp~ls~~ga 146 (221)
T COG2386 69 RLFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMD--VGALGALALTLLLGTPALSFLGA 146 (221)
T ss_pred HHHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC--HhHHHHHHHHHHhcchHHHHHHH
Confidence 467899999984 23455778887776555554444445555556664 34444444444443333333344
Q ss_pred HHHHhc
Q 047475 142 LLMLLT 147 (233)
Q Consensus 142 ~i~~~~ 147 (233)
..+++.
T Consensus 147 ~gaALt 152 (221)
T COG2386 147 VGAALT 152 (221)
T ss_pred HHHHHH
Confidence 444443
No 45
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=42.46 E-value=69 Score=18.59 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 047475 204 AITAIVLAIYPIAFASLFASFIGRLNFQ 231 (233)
Q Consensus 204 ~~~~~iL~~~~v~~~~l~~~~L~~~~~~ 231 (233)
..-.+++.++.+....+.+++..|+|++
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3445667777777777777777666554
No 46
>PHA03029 hypothetical protein; Provisional
Probab=36.84 E-value=1.3e+02 Score=20.22 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=28.5
Q ss_pred hhhhhhH---HhhhccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhhccc
Q 047475 66 QTELTVV---YWERFAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMV 113 (233)
Q Consensus 66 ~~er~v~---~rE~~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~ 113 (233)
-+-|... .|.|+.|.| +++-...--+|+.+..++-|..++|-|-
T Consensus 35 ~k~raai~qnirsrrkg~y----wflnf~fwllp~al~a~fyffsiw~imn 81 (92)
T PHA03029 35 NKIRAAIDQNIRSRRKGLY----WFLNFLFWLLPFALAAAFYFFSIWFIMN 81 (92)
T ss_pred HHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 3445444 367777664 3444444447999998888888888654
No 47
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=33.95 E-value=78 Score=21.35 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 047475 209 VLAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 209 iL~~~~v~~~~l~~~~L~~~~~~k 232 (233)
+.+..+++|...-++.|+|.++.|
T Consensus 8 ~plivf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 8 VPLIVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445556666688888887654
No 48
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=33.83 E-value=82 Score=16.99 Aligned_cols=26 Identities=19% Similarity=0.015 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q 047475 207 AIVLAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 207 ~~iL~~~~v~~~~l~~~~L~~~~~~k 232 (233)
..++.|..+++.+++|+.+-..+.++
T Consensus 3 ~~vi~G~ilv~lLlgYLvyALi~aE~ 28 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYALINAEA 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 45677888888999998887766543
No 49
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.69 E-value=71 Score=19.29 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 047475 205 ITAIVLAIYPIAFASLFASFIGRLN 229 (233)
Q Consensus 205 ~~~~iL~~~~v~~~~l~~~~L~~~~ 229 (233)
.....++.+.++|..+.+.+.+.+|
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3455666666777666667666554
No 50
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=32.56 E-value=3.7e+02 Score=24.17 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=52.0
Q ss_pred CChHHHHHHHHhhhhhHHHHHHHHHhhhhhccc-----------ccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Q 047475 81 YSPLAYALGQIIAEVPYIFFQTGIFIMVTYPMV-----------EYYGSVYKIFCYFYMMLCSL-LYYNYLGMLLMLLTP 148 (233)
Q Consensus 81 Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~~-----------gl~~~~~~f~~~~~~~~l~~-~~~~~~g~~i~~~~~ 148 (233)
-|+..+..+|++.-.-..+.+..++....++.. +++..+..+..+.+.+.+.. +...+++.++++.++
T Consensus 227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~ 306 (407)
T COG1668 227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG 306 (407)
T ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378899999998887777777555554442111 12223333444444444444 444458999999999
Q ss_pred ChHHHHHHHHHHH
Q 047475 149 NYMVAAILSSAYH 161 (233)
Q Consensus 149 ~~~~a~~~~~~~~ 161 (233)
+...|+.....+.
T Consensus 307 ~~k~aq~~~~p~~ 319 (407)
T COG1668 307 SIKEAQTLISPLT 319 (407)
T ss_pred CHHHHHHHhhHHH
Confidence 9999998888444
No 51
>PF14710 Nitr_red_alph_N: Respiratory nitrate reductase alpha N-terminal; PDB: 1SIW_A 3EGW_A 3IR6_A 1R27_C 1Y5I_A 1Y4Z_A 1Q16_A 3IR7_A 1Y5L_A 1Y5N_A ....
Probab=30.45 E-value=25 Score=20.40 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=7.5
Q ss_pred cccCCcHHHHhhh
Q 047475 16 AQLGVDLARIYRD 28 (233)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (233)
...+|+|.+.+|+
T Consensus 24 ~~edR~WE~~YR~ 36 (38)
T PF14710_consen 24 TEEDREWEDAYRQ 36 (38)
T ss_dssp E----GGGHHHHH
T ss_pred cCCCccHHHHHhc
Confidence 3567999999985
No 52
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=27.58 E-value=4.9e+02 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=24.1
Q ss_pred hhhHHhhhc-cCCC-ChHHHHHHHHhhhhhHHHHHH
Q 047475 69 LTVVYWERF-AGMY-SPLAYALGQIIAEVPYIFFQT 102 (233)
Q Consensus 69 r~v~~rE~~-~g~Y-~~~~y~la~~l~elp~~~~~~ 102 (233)
....+|+++ +|-| +..+||+-|-+..-+...+.+
T Consensus 117 La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA 152 (452)
T COG1115 117 LAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFA 152 (452)
T ss_pred HHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHH
Confidence 445577766 6766 578999999888666556655
No 53
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.34 E-value=1.1e+02 Score=20.58 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhccc
Q 047475 213 YPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 213 ~~v~~~~l~~~~L~~~~~~k 232 (233)
.+++|...-++.++|.++.|
T Consensus 12 if~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 12 IFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 33556666688889887655
No 54
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.21 E-value=3.7e+02 Score=22.42 Aligned_cols=144 Identities=12% Similarity=0.096 Sum_probs=76.2
Q ss_pred HhhhccCC--------CChHHHHHHHHhhhhhHHHHHHHHHhhhhhcc---cccccchh--HHHHHHHHHHHHHHHHHHH
Q 047475 73 YWERFAGM--------YSPLAYALGQIIAEVPYIFFQTGIFIMVTYPM---VEYYGSVY--KIFCYFYMMLCSLLYYNYL 139 (233)
Q Consensus 73 ~rE~~~g~--------Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y~~---~gl~~~~~--~f~~~~~~~~l~~~~~~~~ 139 (233)
.-|+++|+ +++.-.|+||+..-+....+.+++....++.. .|...+.. .++.-...-++..+.-.++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44777777 57788899999888777766655555444432 24433332 2232233333444445556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhhcccccCCCCeeecC-CCcccHHHHHHhHhCCcccchhhHHHHHHHHHHHHH
Q 047475 140 GMLLMLLTPNYMVAAILSSAYHTMLNLFSGFFILEPTRKLRYF-GETKTVAAFLKHCFGFDHDHLAITAIVLAIYPIAFA 218 (233)
Q Consensus 140 g~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~~~l~~~-g~~~~~~~~l~~~~~~~~~~~~~~~~iL~~~~v~~~ 218 (233)
=..++.-.+|...|..++... +..+..- ..+.|--.| +.+ .....++..+ .-.++..+.+-.+++.
T Consensus 156 Q~wLsm~fknf~~al~igI~l--~a~fva~----~~s~~~~~PW~~p--i~~~~~~~l~-----v~~~i~~~~v~~ll~~ 222 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL--PALFVAS----AESLPVWLPWASP--ILPMFSGSLS-----VETGILFLGVLALLFL 222 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH--HHHHHHh----ccccCccccchhh--hhhhhccccc-----cchhHHHHHHHHHHHH
Confidence 667777778877777766665 2222111 000000000 000 0111222222 2235667777778888
Q ss_pred HHHHHHHHhhh
Q 047475 219 SLFASFIGRLN 229 (233)
Q Consensus 219 ~l~~~~L~~~~ 229 (233)
+.+.+.+++++
T Consensus 223 l~s~l~~~r~~ 233 (239)
T COG4200 223 LSSFLFFKRKK 233 (239)
T ss_pred HHHHHHHhhhc
Confidence 88888887653
No 55
>PF12669 P12: Virus attachment protein p12 family
Probab=27.20 E-value=48 Score=21.10 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=4.5
Q ss_pred HHHHHhhhcc
Q 047475 222 ASFIGRLNFQ 231 (233)
Q Consensus 222 ~~~L~~~~~~ 231 (233)
|+++|+..++
T Consensus 14 ~v~~r~~~k~ 23 (58)
T PF12669_consen 14 YVAIRKFIKD 23 (58)
T ss_pred HHHHHHHHHH
Confidence 4444554433
No 56
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=23.91 E-value=2.3e+02 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.353 Sum_probs=26.6
Q ss_pred ccCCCChHHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 047475 77 FAGMYSPLAYALGQIIAEVPYIFFQTGIFIMVTY 110 (233)
Q Consensus 77 ~~g~Y~~~~y~la~~l~elp~~~~~~~i~~~i~Y 110 (233)
..|.|...+-.++++..-+|+++-..+.+..+++
T Consensus 3 s~~iYp~i~~~l~~~~g~~PFSvgdi~~~~~il~ 36 (318)
T PF12725_consen 3 SRGIYPVISKLLRRLFGWFPFSVGDILYYLLILF 36 (318)
T ss_pred cCcchHHHHHHHHHhccCcChhHHHHHHHHHHHH
Confidence 5678888888999999999998877666655554
No 57
>PRK09458 pspB phage shock protein B; Provisional
Probab=22.43 E-value=1.5e+02 Score=20.07 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q 047475 210 LAIYPIAFASLFASFIGRLNFQR 232 (233)
Q Consensus 210 L~~~~v~~~~l~~~~L~~~~~~k 232 (233)
-+.++++|..--++.|+|.+|.|
T Consensus 9 PliiF~ifVaPiWL~LHY~sk~~ 31 (75)
T PRK09458 9 PLTIFVLFVAPIWLWLHYRSKRQ 31 (75)
T ss_pred hHHHHHHHHHHHHHHHhhccccc
Confidence 34455556666689999987665
Done!