Query 047475
Match_columns 233
No_of_seqs 131 out of 1275
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 20:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 49.5 22 0.00074 20.6 3.4 15 219-233 29-44 (44)
2 2l2t_A Receptor tyrosine-prote 40.5 34 0.0012 19.7 3.3 13 220-232 29-41 (44)
3 2jwa_A Receptor tyrosine-prote 22.0 1.1E+02 0.0036 17.6 3.2 10 223-232 33-42 (44)
4 2l9u_A Receptor tyrosine-prote 11.1 2.3E+02 0.0077 15.3 3.9 27 202-228 5-31 (40)
5 2k21_A Potassium voltage-gated 6.4 6.2E+02 0.021 18.0 3.9 23 203-225 52-74 (138)
6 2hac_A T-cell surface glycopro 6.0 4.1E+02 0.014 14.1 3.2 20 208-228 10-29 (33)
7 1ib8_A Conserved protein SP14. 5.5 1E+02 0.0036 22.8 -0.6 20 4-23 79-100 (164)
8 1xl4_A Inward rectifier potass 5.4 3.4E+02 0.012 22.1 2.4 11 102-113 61-71 (301)
9 4ev6_A Magnesium transport pro 5.3 9.8E+02 0.033 19.3 5.4 18 212-229 320-337 (339)
10 1q2f_A PNC27; P53 protein, MDM 4.9 1.4E+02 0.0049 15.8 -0.1 9 20-28 6-14 (32)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=49.55 E-value=22 Score=20.55 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=7.2
Q ss_pred HHHHHHHHhhh-cccC
Q 047475 219 SLFASFIGRLN-FQRR 233 (233)
Q Consensus 219 ~l~~~~L~~~~-~~kr 233 (233)
++.++.+|+++ ++||
T Consensus 29 ~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHTTTCCSCC
T ss_pred HHHHHHhhhhHhhccC
Confidence 34455555554 3443
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.48 E-value=34 Score=19.72 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=6.2
Q ss_pred HHHHHHHhhhccc
Q 047475 220 LFASFIGRLNFQR 232 (233)
Q Consensus 220 l~~~~L~~~~~~k 232 (233)
+.++.+|+++++|
T Consensus 29 ~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 29 TFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHTTCSSC
T ss_pred HHHHHhhhhhhhh
Confidence 3345555554433
No 3
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.01 E-value=1.1e+02 Score=17.59 Aligned_cols=10 Identities=20% Similarity=0.096 Sum_probs=4.3
Q ss_pred HHHHhhhccc
Q 047475 223 SFIGRLNFQR 232 (233)
Q Consensus 223 ~~L~~~~~~k 232 (233)
+.+|+++.+|
T Consensus 33 ~~~RRR~~~~ 42 (44)
T 2jwa_A 33 ILIKRRQQKI 42 (44)
T ss_dssp HHHHHHCSCC
T ss_pred hheehhhhhc
Confidence 3344444443
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=11.10 E-value=2.3e+02 Score=15.28 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047475 202 HLAITAIVLAIYPIAFASLFASFIGRL 228 (233)
Q Consensus 202 ~~~~~~~iL~~~~v~~~~l~~~~L~~~ 228 (233)
.+...+.+..+..++|.+++--.|.++
T Consensus 5 hl~malt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 5 HLTMALTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCceeEEEc
Confidence 344567788889999999987777554
No 5
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=6.38 E-value=6.2e+02 Score=18.01 Aligned_cols=23 Identities=9% Similarity=-0.122 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 047475 203 LAITAIVLAIYPIAFASLFASFI 225 (233)
Q Consensus 203 ~~~~~~iL~~~~v~~~~l~~~~L 225 (233)
....+++++++.-+|.+.-.++-
T Consensus 52 ~ylYIL~vmgffgff~~GImLsY 74 (138)
T 2k21_A 52 EALYVLMVLGFFGFFTLGIMLSY 74 (138)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555544433333
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.95 E-value=4.1e+02 Score=14.10 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 047475 208 IVLAIYPIAFASLFASFIGRL 228 (233)
Q Consensus 208 ~iL~~~~v~~~~l~~~~L~~~ 228 (233)
++|+.++++...+ |.-+|+.
T Consensus 10 giL~iYgii~T~L-y~R~K~~ 29 (33)
T 2hac_A 10 GILFIYGVILTAL-FLRVKFS 29 (33)
T ss_dssp HHHHHHHHHHHHH-HHHHHST
T ss_pred HHHHHHHHHHHHH-HHHHHhh
Confidence 4566666666555 4444443
No 7
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=5.45 E-value=1e+02 Score=22.83 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=14.2
Q ss_pred chhcccccccccc--ccCCcHH
Q 047475 4 TWMLEVSSKSAEA--QLGVDLA 23 (233)
Q Consensus 4 ~~~l~~~~~~~~~--~~~~~~~ 23 (233)
+|.|||.|+|-+. +..+||.
T Consensus 79 ~Y~LEVSSPGldRpL~~~~df~ 100 (164)
T 1ib8_A 79 QYFLEITSPGLERPLKTKDAVA 100 (164)
T ss_dssp CEEEEEECCSSSSCCSSHHHHH
T ss_pred CeEEEEeCCCCCCCCCCHHHHH
Confidence 6889999998664 2345664
No 8
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=5.35 E-value=3.4e+02 Score=22.10 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.3
Q ss_pred HHHHhhhhhccc
Q 047475 102 TGIFIMVTYPMV 113 (233)
Q Consensus 102 ~~i~~~i~Y~~~ 113 (233)
.++|+.+ |+..
T Consensus 61 ~l~fa~l-y~~~ 71 (301)
T 1xl4_A 61 NALFALA-YLAC 71 (301)
T ss_dssp HHHHHHH-HHHT
T ss_pred HHHHHHH-HHhh
Confidence 3455555 5444
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.31 E-value=9.8e+02 Score=19.31 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 047475 212 IYPIAFASLFASFIGRLN 229 (233)
Q Consensus 212 ~~~v~~~~l~~~~L~~~~ 229 (233)
+..++..++.++.+|+++
T Consensus 320 ~~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 320 ALMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 333444444455566554
No 10
>1q2f_A PNC27; P53 protein, MDM-2 binding domain, penetratin, antitumor, antitumor protein; NMR {Synthetic} SCOP: j.69.1.1 PDB: 1q2i_A
Probab=4.88 E-value=1.4e+02 Score=15.79 Aligned_cols=9 Identities=0% Similarity=0.242 Sum_probs=0.0
Q ss_pred CcHHHHhhh
Q 047475 20 VDLARIYRD 28 (233)
Q Consensus 20 ~~~~~~~~~ 28 (233)
..|+++|.+
T Consensus 6 q~FadLW~~ 14 (32)
T 1q2f_A 6 ETFSDLWKL 14 (32)
T ss_dssp TTTTTHHHH
T ss_pred HHHHHHHHH
Done!