Query 047475
Match_columns 233
No_of_seqs 131 out of 1275
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 20:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 13.0 1.3E+02 0.0093 18.4 4.2 25 206-230 33-57 (100)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 12.1 1E+02 0.0073 15.6 3.6 14 208-221 8-21 (37)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 8.0 2.1E+02 0.016 17.6 3.9 22 208-229 41-62 (107)
4 d1kf6c_ f.21.2.2 (C:) Fumarate 5.9 90 0.0066 20.7 1.0 29 67-95 2-30 (130)
5 d1v54l_ f.23.6.1 (L:) Mitochon 5.6 2.3E+02 0.017 14.8 4.8 32 197-228 11-42 (46)
6 d1xl4a2 f.14.1.1 (A:23-138) In 5.2 1.9E+02 0.014 17.8 2.4 19 145-163 79-97 (116)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 5.1 35 0.0025 21.1 -1.5 22 209-230 25-46 (91)
8 d2o4ta1 a.69.4.1 (A:16-105) Un 4.8 60 0.0044 20.0 -0.5 11 19-29 74-84 (90)
9 d2ae9a1 a.237.1.1 (A:1-76) The 4.6 75 0.0054 18.8 -0.1 18 63-80 49-66 (76)
10 d1p7ba2 f.14.1.1 (A:36-151) In 3.6 93 0.0068 19.5 -0.3 21 145-165 80-100 (116)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.99 E-value=1.3e+02 Score=18.45 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 047475 206 TAIVLAIYPIAFASLFASFIGRLNF 230 (233)
Q Consensus 206 ~~~iL~~~~v~~~~l~~~~L~~~~~ 230 (233)
...+...+.++..++.+...|++++
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3444445556666677777776643
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=12.06 E-value=1e+02 Score=15.57 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 047475 208 IVLAIYPIAFASLF 221 (233)
Q Consensus 208 ~iL~~~~v~~~~l~ 221 (233)
+.+.++.++|..+-
T Consensus 8 l~ly~Fw~FFagLi 21 (37)
T d1eysh2 8 ITIWAFWLFFFGLI 21 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=8.01 E-value=2.1e+02 Score=17.60 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 047475 208 IVLAIYPIAFASLFASFIGRLN 229 (233)
Q Consensus 208 ~iL~~~~v~~~~l~~~~L~~~~ 229 (233)
.+...+.++..++.+...|+++
T Consensus 41 i~~~I~~~V~~~~~~~~~~~r~ 62 (107)
T d3ehbb2 41 IITAVTIFVCLLLLICIVRFNR 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHSBT
T ss_pred HHHHHHHHHHHHHHHHhhhhhc
Confidence 3333334455566666777653
No 4
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=5.85 E-value=90 Score=20.65 Aligned_cols=29 Identities=10% Similarity=-0.028 Sum_probs=25.1
Q ss_pred hhhhhHHhhhccCCCChHHHHHHHHhhhh
Q 047475 67 TELTVVYWERFAGMYSPLAYALGQIIAEV 95 (233)
Q Consensus 67 ~er~v~~rE~~~g~Y~~~~y~la~~l~el 95 (233)
+.|+-|.||.+.......+||--.++-|.
T Consensus 2 skRkpYvR~m~~~WW~k~~FYr~YMlRE~ 30 (130)
T d1kf6c_ 2 TKRKPYVRPMTSTWWKKLPFYRFYMLREG 30 (130)
T ss_dssp CCCCCBCCCCCTTGGGSSHHHHHHHHHHH
T ss_pred CCCCCccCCCCchHhhcCcHHHHHHHHHH
Confidence 45788899999999999999999888875
No 5
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.62 E-value=2.3e+02 Score=14.79 Aligned_cols=32 Identities=3% Similarity=-0.125 Sum_probs=23.4
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 047475 197 GFDHDHLAITAIVLAIYPIAFASLFASFIGRL 228 (233)
Q Consensus 197 ~~~~~~~~~~~~iL~~~~v~~~~l~~~~L~~~ 228 (233)
-++.++.|+-.+.+..++..=+.+-++.+|+.
T Consensus 11 PFsv~Nk~rLla~m~~~fGsgfa~PF~ivRhq 42 (46)
T d1v54l_ 11 PFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQ 42 (46)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHhccccchHHHHHHH
Confidence 45567899888888777777677777777753
No 6
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=5.16 E-value=1.9e+02 Score=17.80 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=9.3
Q ss_pred HhcCChHHHHHHHHHHHHH
Q 047475 145 LLTPNYMVAAILSSAYHTM 163 (233)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~ 163 (233)
-..|+-..+..+..+....
T Consensus 79 Di~P~t~~~r~~~~~~~~~ 97 (116)
T d1xl4a2 79 KLIPIGPLANTLVTLEALC 97 (116)
T ss_dssp SSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHH
Confidence 4556655555544444433
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.08 E-value=35 Score=21.07 Aligned_cols=22 Identities=9% Similarity=-0.198 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 047475 209 VLAIYPIAFASLFASFIGRLNF 230 (233)
Q Consensus 209 iL~~~~v~~~~l~~~~L~~~~~ 230 (233)
.++.+.+++.++.|...||+++
T Consensus 25 ~~iv~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 25 MLIVVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTTTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHhhheeeecc
Confidence 3344456666666777777643
No 8
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=4.78 E-value=60 Score=20.03 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=7.9
Q ss_pred CCcHHHHhhhc
Q 047475 19 GVDLARIYRDS 29 (233)
Q Consensus 19 ~~~~~~~~~~s 29 (233)
.+.|.+.||++
T Consensus 74 ~k~~~dk~r~~ 84 (90)
T d2o4ta1 74 SKTYADLYQES 84 (90)
T ss_dssp SHHHHHHHHHH
T ss_pred chhhHHHHHHH
Confidence 35788888853
No 9
>d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=4.61 E-value=75 Score=18.83 Aligned_cols=18 Identities=6% Similarity=-0.211 Sum_probs=12.6
Q ss_pred chhhhhhhhHHhhhccCC
Q 047475 63 PYVQTELTVVYWERFAGM 80 (233)
Q Consensus 63 ~~f~~er~v~~rE~~~g~ 80 (233)
..+..||-.++|..+.++
T Consensus 49 R~yF~eRL~~yR~~s~~~ 66 (76)
T d2ae9a1 49 RSWFRERLIAHRLASVNL 66 (76)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 347788888888776544
No 10
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=3.57 E-value=93 Score=19.52 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=9.9
Q ss_pred HhcCChHHHHHHHHHHHHHHH
Q 047475 145 LLTPNYMVAAILSSAYHTMLN 165 (233)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~ 165 (233)
-..|+-..+..+..+......
T Consensus 80 Di~P~t~~~~~~~~~~~~~g~ 100 (116)
T d1p7ba2 80 DMHPQTVYAHAIATLEIFVGM 100 (116)
T ss_dssp CCCCCSHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHH
Confidence 445655555544444443333
Done!