Query 047476
Match_columns 463
No_of_seqs 196 out of 1790
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 11:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.5 5.2E-16 1.1E-20 137.8 -1.4 279 10-355 98-394 (419)
2 smart00579 FBD domain in FBox 99.5 1.1E-13 2.3E-18 101.0 6.8 72 386-463 1-72 (72)
3 PF08387 FBD: FBD; InterPro: 99.4 1.2E-13 2.7E-18 92.3 4.5 51 377-427 1-51 (51)
4 KOG4341 F-box protein containi 99.3 9.5E-14 2.1E-18 129.0 -2.9 335 12-431 74-439 (483)
5 PF12937 F-box-like: F-box-lik 98.7 8E-09 1.7E-13 68.2 2.9 35 10-44 1-35 (47)
6 PF00646 F-box: F-box domain; 98.3 1.5E-07 3.2E-12 62.5 0.6 38 10-47 3-40 (48)
7 PLN03210 Resistant to P. syrin 98.3 1.7E-06 3.7E-11 96.7 8.9 67 289-359 798-880 (1153)
8 smart00256 FBOX A Receptor for 98.1 1.3E-06 2.8E-11 55.7 2.0 34 13-46 1-34 (41)
9 PLN00113 leucine-rich repeat r 98.1 5.1E-06 1.1E-10 92.1 6.2 66 142-208 108-175 (968)
10 cd00116 LRR_RI Leucine-rich re 97.9 1.8E-05 3.9E-10 75.8 7.0 20 406-425 295-314 (319)
11 PLN00113 leucine-rich repeat r 97.9 1.6E-05 3.6E-10 88.1 6.3 198 143-358 85-294 (968)
12 PLN03210 Resistant to P. syrin 97.9 1.9E-05 4E-10 88.5 6.2 100 150-253 610-715 (1153)
13 cd00116 LRR_RI Leucine-rich re 97.9 3.5E-06 7.6E-11 80.8 0.3 61 148-208 78-148 (319)
14 KOG2120 SCF ubiquitin ligase, 97.7 9.9E-06 2.1E-10 73.2 0.1 152 89-253 211-374 (419)
15 KOG4194 Membrane glycoprotein 97.5 4.4E-05 9.4E-10 75.2 1.6 17 288-304 360-376 (873)
16 KOG2982 Uncharacterized conser 97.4 0.00046 9.9E-09 62.7 7.5 205 146-360 40-261 (418)
17 KOG1909 Ran GTPase-activating 97.4 0.00012 2.6E-09 67.7 3.8 82 151-232 30-132 (382)
18 KOG4341 F-box protein containi 97.4 4.2E-05 9.1E-10 72.3 0.1 198 147-356 212-434 (483)
19 KOG3207 Beta-tubulin folding c 97.3 3.1E-05 6.6E-10 73.6 -1.3 202 149-358 119-336 (505)
20 PF07723 LRR_2: Leucine Rich R 97.2 0.00034 7.4E-09 39.1 2.7 25 173-197 1-26 (26)
21 KOG1909 Ran GTPase-activating 97.2 0.0002 4.3E-09 66.3 2.2 174 169-358 89-280 (382)
22 PRK15387 E3 ubiquitin-protein 97.2 0.00084 1.8E-08 70.8 7.0 97 142-252 215-312 (788)
23 KOG3207 Beta-tubulin folding c 97.1 0.00016 3.4E-09 68.9 0.7 123 149-271 170-310 (505)
24 KOG3665 ZYG-1-like serine/thre 97.1 0.00044 9.6E-09 72.4 3.7 79 151-230 122-205 (699)
25 PRK15387 E3 ubiquitin-protein 97.0 0.00081 1.8E-08 71.0 5.5 33 150-184 241-274 (788)
26 KOG1947 Leucine rich repeat pr 97.0 7.7E-05 1.7E-09 75.8 -2.7 105 147-251 210-330 (482)
27 KOG4194 Membrane glycoprotein 96.9 0.00031 6.7E-09 69.4 0.5 58 148-206 99-158 (873)
28 PF14580 LRR_9: Leucine-rich r 96.8 0.0016 3.6E-08 55.8 4.3 81 150-231 41-124 (175)
29 PRK15370 E3 ubiquitin-protein 96.7 0.00078 1.7E-08 71.3 2.0 21 339-359 406-426 (754)
30 PF14580 LRR_9: Leucine-rich r 96.7 0.002 4.4E-08 55.3 4.0 22 339-360 131-152 (175)
31 PF13855 LRR_8: Leucine rich r 96.6 0.0014 3E-08 45.6 2.1 55 152-207 2-59 (61)
32 KOG0444 Cytoskeletal regulator 96.5 3.1E-05 6.6E-10 76.8 -8.8 197 141-359 93-302 (1255)
33 KOG1947 Leucine rich repeat pr 96.4 0.0016 3.5E-08 66.1 1.8 62 170-231 186-254 (482)
34 PRK15370 E3 ubiquitin-protein 96.2 0.0082 1.8E-07 63.7 6.1 101 142-252 192-293 (754)
35 KOG0444 Cytoskeletal regulator 96.0 7.7E-05 1.7E-09 74.1 -9.5 201 142-360 164-374 (1255)
36 KOG0617 Ras suppressor protein 95.1 0.00086 1.9E-08 56.0 -4.8 65 141-207 46-112 (264)
37 KOG1859 Leucine-rich repeat pr 95.1 0.0041 8.8E-08 63.4 -1.2 196 86-304 53-290 (1096)
38 KOG1259 Nischarin, modulator o 94.8 0.013 2.8E-07 53.6 1.3 242 140-415 171-452 (490)
39 KOG0281 Beta-TrCP (transducin 94.3 0.016 3.6E-07 53.5 0.8 37 7-43 72-112 (499)
40 KOG3665 ZYG-1-like serine/thre 94.0 0.026 5.7E-07 59.4 1.7 121 283-426 163-283 (699)
41 PF12799 LRR_4: Leucine Rich r 94.0 0.047 1E-06 35.0 2.2 35 172-208 1-35 (44)
42 PF12799 LRR_4: Leucine Rich r 93.7 0.03 6.6E-07 35.9 1.1 35 151-185 1-37 (44)
43 KOG0618 Serine/threonine phosp 93.2 0.017 3.7E-07 60.6 -1.3 99 150-253 382-487 (1081)
44 PF13855 LRR_8: Leucine rich r 93.0 0.13 2.8E-06 35.5 3.5 43 141-183 14-60 (61)
45 PLN03215 ascorbic acid mannose 92.9 0.061 1.3E-06 51.7 2.0 37 10-46 4-41 (373)
46 KOG0617 Ras suppressor protein 92.8 0.0073 1.6E-07 50.6 -3.7 48 140-187 68-117 (264)
47 KOG1644 U2-associated snRNP A' 92.6 0.38 8.3E-06 41.8 6.3 58 149-207 62-123 (233)
48 PRK15386 type III secretion pr 92.6 0.17 3.6E-06 49.5 4.6 88 170-269 50-139 (426)
49 KOG3864 Uncharacterized conser 92.4 0.033 7.2E-07 48.1 -0.3 80 152-231 102-187 (221)
50 KOG2997 F-box protein FBX9 [Ge 92.4 0.071 1.5E-06 49.1 1.7 36 8-43 105-145 (366)
51 KOG2739 Leucine-rich acidic nu 92.1 0.071 1.5E-06 47.9 1.4 83 149-231 41-127 (260)
52 KOG2982 Uncharacterized conser 92.1 0.16 3.5E-06 46.7 3.6 153 147-305 93-261 (418)
53 KOG1644 U2-associated snRNP A' 91.2 0.27 5.8E-06 42.7 3.8 99 152-253 43-151 (233)
54 PLN03150 hypothetical protein; 91.2 0.21 4.5E-06 52.5 3.9 80 152-232 419-502 (623)
55 COG5238 RNA1 Ran GTPase-activa 89.8 0.84 1.8E-05 41.6 5.8 162 190-358 85-282 (388)
56 PLN03150 hypothetical protein; 88.4 0.44 9.5E-06 50.1 3.7 80 173-253 419-501 (623)
57 smart00367 LRR_CC Leucine-rich 88.1 0.28 6E-06 27.2 1.1 18 196-213 1-18 (26)
58 KOG2739 Leucine-rich acidic nu 87.5 0.14 2.9E-06 46.2 -0.6 103 194-301 40-151 (260)
59 KOG1259 Nischarin, modulator o 87.2 0.047 1E-06 50.0 -3.7 54 150-206 283-338 (490)
60 PRK15386 type III secretion pr 87.1 0.83 1.8E-05 44.8 4.4 106 152-270 73-185 (426)
61 KOG0618 Serine/threonine phosp 85.4 0.085 1.8E-06 55.6 -3.4 64 141-206 81-146 (1081)
62 KOG4658 Apoptotic ATPase [Sign 84.6 0.52 1.1E-05 51.3 1.8 81 151-231 523-606 (889)
63 KOG0274 Cdc4 and related F-box 84.2 0.44 9.5E-06 48.8 1.1 39 5-43 103-141 (537)
64 COG4886 Leucine-rich repeat (L 82.6 0.56 1.2E-05 46.3 1.1 161 151-330 116-286 (394)
65 PF13013 F-box-like_2: F-box-l 82.2 0.79 1.7E-05 35.8 1.5 30 9-38 21-50 (109)
66 PF13516 LRR_6: Leucine Rich r 81.9 1.3 2.8E-05 23.9 1.9 22 171-192 1-22 (24)
67 KOG3864 Uncharacterized conser 81.3 0.94 2E-05 39.4 1.8 57 174-231 103-162 (221)
68 KOG0472 Leucine-rich repeat pr 80.5 0.32 6.9E-06 46.7 -1.4 112 139-253 194-308 (565)
69 KOG0472 Leucine-rich repeat pr 79.5 1.3 2.8E-05 42.7 2.2 41 144-184 428-470 (565)
70 KOG2123 Uncharacterized conser 78.9 0.13 2.9E-06 46.8 -4.2 106 171-299 18-123 (388)
71 KOG2123 Uncharacterized conser 74.6 0.5 1.1E-05 43.1 -1.8 55 151-206 41-97 (388)
72 COG4886 Leucine-rich repeat (L 65.1 2.4 5.1E-05 41.9 0.4 153 140-304 128-288 (394)
73 PF13504 LRR_7: Leucine rich r 64.7 3.9 8.4E-05 20.0 0.9 10 198-207 2-11 (17)
74 PF00560 LRR_1: Leucine Rich R 64.6 5.9 0.00013 20.8 1.7 13 152-164 1-13 (22)
75 KOG4658 Apoptotic ATPase [Sign 63.0 3.5 7.6E-05 45.1 1.2 102 148-252 542-652 (889)
76 PF08387 FBD: FBD; InterPro: 61.6 11 0.00024 24.8 3.0 35 322-356 15-50 (51)
77 KOG0531 Protein phosphatase 1, 57.4 4.8 0.0001 40.1 1.0 78 149-231 93-173 (414)
78 PF13306 LRR_5: Leucine rich r 56.6 18 0.00038 28.8 4.1 56 148-206 9-67 (129)
79 PF09372 PRANC: PRANC domain; 46.8 14 0.0003 28.2 1.9 25 8-32 70-94 (97)
80 smart00368 LRR_RI Leucine rich 44.8 20 0.00044 20.1 1.9 20 172-191 2-21 (28)
81 KOG3926 F-box proteins [Amino 44.0 6 0.00013 35.9 -0.6 50 8-57 200-256 (332)
82 KOG4237 Extracellular matrix p 42.3 35 0.00076 33.3 4.1 94 242-346 274-373 (498)
83 KOG4579 Leucine-rich repeat (L 41.8 1.6 3.4E-05 35.7 -4.1 58 149-208 51-111 (177)
84 KOG0531 Protein phosphatase 1, 40.3 4.8 0.0001 40.1 -2.0 80 147-231 114-197 (414)
85 KOG4237 Extracellular matrix p 38.7 33 0.00071 33.4 3.3 58 150-208 273-333 (498)
86 smart00579 FBD domain in FBox 37.1 52 0.0011 23.2 3.5 39 322-360 6-45 (72)
87 COG5238 RNA1 Ran GTPase-activa 36.5 27 0.00058 32.3 2.2 34 173-206 186-223 (388)
88 KOG4408 Putative Mg2+ and Co2+ 35.1 9.4 0.0002 35.8 -0.8 39 11-49 9-47 (386)
89 PF01827 FTH: FTH domain; Int 32.7 1.3E+02 0.0029 24.2 5.9 119 74-204 3-124 (142)
90 PF03448 MgtE_N: MgtE intracel 29.3 64 0.0014 24.5 3.1 31 3-33 39-69 (102)
91 PF03448 MgtE_N: MgtE intracel 24.5 20 0.00042 27.4 -0.6 30 4-33 64-93 (102)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.2e-16 Score=137.79 Aligned_cols=279 Identities=15% Similarity=0.171 Sum_probs=168.4
Q ss_pred ccCCchHHHHHHHhcCCchhHHhhhccccchhhh------heecceeEeecccccCCCchHHHHhhhhhHHHHHHHHHHH
Q 047476 10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI------WLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIG 83 (463)
Q Consensus 10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~ 83 (463)
+..||||++..|||.|+.+|+.+.+.|||||.++ |..+ ++....+.+ +...+.+.
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p----------------~~l~~l~~ 158 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP----------------DVLGRLLS 158 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh----------------hHHHHHHh
Confidence 5679999999999999999999999999999965 5442 333322111 12222222
Q ss_pred hcCCCCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeee
Q 047476 84 QYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNI 163 (463)
Q Consensus 84 ~~~~~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~ 163 (463)
.+|..|++--....+..++... ..++..++.+++..... ..-.+...+..|..|+.|+|.|..+
T Consensus 159 ----rgV~v~Rlar~~~~~prlae~~-~~frsRlq~lDLS~s~i-----------t~stl~~iLs~C~kLk~lSlEg~~L 222 (419)
T KOG2120|consen 159 ----RGVIVFRLARSFMDQPRLAEHF-SPFRSRLQHLDLSNSVI-----------TVSTLHGILSQCSKLKNLSLEGLRL 222 (419)
T ss_pred ----CCeEEEEcchhhhcCchhhhhh-hhhhhhhHHhhcchhhe-----------eHHHHHHHHHHHHhhhhcccccccc
Confidence 2355555542222222111111 11234577777754321 1223444566789999999999888
Q ss_pred CCC---CCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCcee---ecccCCCCccEEEEecCCCCc--
Q 047476 164 NAS---RFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITVPNLRLKRLVIDKCDFNQ-- 234 (463)
Q Consensus 164 ~~~---~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~~~~~L~~L~i~~c~~~~-- 234 (463)
+++ ..+.=.+|+.|+|+.+. ++..+++-++++|..|.+|+|..|...+.. -|..-.++|+.|.+++|..++
T Consensus 223 dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~ 302 (419)
T KOG2120|consen 223 DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK 302 (419)
T ss_pred CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh
Confidence 754 44566789999999886 788999999999999999999999755432 133334588888888876321
Q ss_pred ---eeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCC
Q 047476 235 ---YRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHA 311 (463)
Q Consensus 235 ---~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~ 311 (463)
..+.-.+|+|..|+++++.. . .+.....+-.++-+++|.++-+. ...|.-
T Consensus 303 sh~~tL~~rcp~l~~LDLSD~v~--------------------l------~~~~~~~~~kf~~L~~lSlsRCY-~i~p~~ 355 (419)
T KOG2120|consen 303 SHLSTLVRRCPNLVHLDLSDSVM--------------------L------KNDCFQEFFKFNYLQHLSLSRCY-DIIPET 355 (419)
T ss_pred hHHHHHHHhCCceeeeccccccc--------------------c------CchHHHHHHhcchheeeehhhhc-CCChHH
Confidence 12223366666666665431 1 11233345567777888775321 111100
Q ss_pred CCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEE
Q 047476 312 EEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTI 355 (463)
Q Consensus 312 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l 355 (463)
.+.......+.+|++.++... ..+.-+.+.||+|+--.-
T Consensus 356 --~~~l~s~psl~yLdv~g~vsd---t~mel~~e~~~~lkin~q 394 (419)
T KOG2120|consen 356 --LLELNSKPSLVYLDVFGCVSD---TTMELLKEMLSHLKINCQ 394 (419)
T ss_pred --eeeeccCcceEEEEeccccCc---hHHHHHHHhCccccccce
Confidence 000011116888888765532 467777889998765443
No 2
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.47 E-value=1.1e-13 Score=101.03 Aligned_cols=72 Identities=22% Similarity=0.463 Sum_probs=61.8
Q ss_pred cccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecccccccCcchhhhHHHHHHHHHHhhhccccceEEeC
Q 047476 386 PCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY 463 (463)
Q Consensus 386 ~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~~~~~~l~~~~raS~~~~i~~~ 463 (463)
+|+.++||.|+|.||.|..+|++|++||++||+.||+|+|..++.. .+. + .+..++|..++|||+.|+|.|+
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~--~~~-~---~~i~~~L~~~~~aS~~c~i~~~ 72 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSD--DDE-K---LEILKELLSLPRASSSCQVQFL 72 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCC--ccH-H---HHHHHHHHhCcCCCCceEEEeC
Confidence 4788999999999999999999999999999999999999998762 221 1 2345689999999999999985
No 3
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=99.44 E-value=1.2e-13 Score=92.31 Aligned_cols=51 Identities=25% Similarity=0.604 Sum_probs=47.5
Q ss_pred hhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeec
Q 047476 377 CWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYL 427 (463)
Q Consensus 377 ~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~ 427 (463)
+|.++.++|+|+.+|||.|+|.||.|..+|++|++|+++||++||+|+|.+
T Consensus 1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 476777779999999999999999999999999999999999999999974
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.31 E-value=9.5e-14 Score=129.03 Aligned_cols=335 Identities=16% Similarity=0.179 Sum_probs=171.1
Q ss_pred CCchHHHHHHHhcCCchhHHhhhccccchhhh------heecceeEeecccccCCCchHHHHhhhhhHHHHHHHHHHHhc
Q 047476 12 KLTNDLVTVIISYLPFKEAARTSILSRRWRHI------WLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQY 85 (463)
Q Consensus 12 ~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~ 85 (463)
.||.|++..|||+|+++...|++++|+-|..+ |.++.-.+|..+. .- .+|..++. +
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-------------~g----~VV~~~~~-R 135 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-------------DG----GVVENMIS-R 135 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-------------CC----cceehHhh-h
Confidence 59999999999999999999999999999965 5555433332211 00 13343333 3
Q ss_pred CCCCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeee-C
Q 047476 86 NATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNI-N 164 (463)
Q Consensus 86 ~~~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~ 164 (463)
.|..++.++++........ .. -.....|+++++|.+.+|.. +
T Consensus 136 cgg~lk~LSlrG~r~v~~s--sl-----------------------------------rt~~~~CpnIehL~l~gc~~iT 178 (483)
T KOG4341|consen 136 CGGFLKELSLRGCRAVGDS--SL-----------------------------------RTFASNCPNIEHLALYGCKKIT 178 (483)
T ss_pred hccccccccccccccCCcc--hh-----------------------------------hHHhhhCCchhhhhhhcceecc
Confidence 4457777777654432211 00 00112445555555555531 1
Q ss_pred CCCC----CCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeec---ccCCCCccEEEEecCCC-C--
Q 047476 165 ASRF----NNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDI---TVPNLRLKRLVIDKCDF-N-- 233 (463)
Q Consensus 165 ~~~~----~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i---~~~~~~L~~L~i~~c~~-~-- 233 (463)
...+ ..|+.|+.|.|..|. +++..+..+..+||+|+.|+++.|..+..-.+ ...+..|+.+...+|.- .
T Consensus 179 d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le 258 (483)
T KOG4341|consen 179 DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE 258 (483)
T ss_pred HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH
Confidence 1111 135555555555533 45555555555666666666666554433111 11223344444444431 0
Q ss_pred -ceeEEEECCCceEEEEecccc--eeeee----cCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccc--
Q 047476 234 -QYRYEIAAPNLRFWKYSGTEG--MFRVE----RQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFL-- 304 (463)
Q Consensus 234 -~~~~~i~aP~L~~l~~~g~~~--~~~~~----~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~-- 304 (463)
+..+.-.++.+.++.+..+.. ...+. .+..|+.+...-+.. ..+..+..+..+.++|+.|-+.+..
T Consensus 259 ~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-----~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 259 ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-----ITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-----CchHHHHHHhcCCCceEEEeccccchh
Confidence 001111112222222111100 00000 011122222211111 1256677888889999999887643
Q ss_pred ----cccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhcc
Q 047476 305 ----LQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTK 380 (463)
Q Consensus 305 ----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~ 380 (463)
++.+..+.. .|+.|.++.+....+ ..+.++-.+||.|+.|.+.-+...... +. .-
T Consensus 334 sd~~ft~l~rn~~--------~Le~l~~e~~~~~~d-~tL~sls~~C~~lr~lslshce~itD~------gi------~~ 392 (483)
T KOG4341|consen 334 SDRGFTMLGRNCP--------HLERLDLEECGLITD-GTLASLSRNCPRLRVLSLSHCELITDE------GI------RH 392 (483)
T ss_pred hhhhhhhhhcCCh--------hhhhhcccccceehh-hhHhhhccCCchhccCChhhhhhhhhh------hh------hh
Confidence 222222222 466777766554333 368899999999999999733211100 00 00
Q ss_pred ccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeeccccc
Q 047476 381 NIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEV 431 (463)
Q Consensus 381 ~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~~~~ 431 (463)
..+ ..|.+.+|.++++.+...... +..+ .+.+.++||++.+.....+
T Consensus 393 l~~-~~c~~~~l~~lEL~n~p~i~d--~~Le-~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 393 LSS-SSCSLEGLEVLELDNCPLITD--ATLE-HLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhh-ccccccccceeeecCCCCchH--HHHH-HHhhCcccceeeeechhhh
Confidence 011 246778888888887655421 1222 3455778888777766554
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.72 E-value=8e-09 Score=68.16 Aligned_cols=35 Identities=37% Similarity=0.675 Sum_probs=31.0
Q ss_pred ccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476 10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW 44 (463)
Q Consensus 10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw 44 (463)
|+.||+|++.+||++||.+|.++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.32 E-value=1.5e-07 Score=62.48 Aligned_cols=38 Identities=37% Similarity=0.642 Sum_probs=31.9
Q ss_pred ccCCchHHHHHHHhcCCchhHHhhhccccchhhhheec
Q 047476 10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLST 47 (463)
Q Consensus 10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~~~ 47 (463)
|++||+|++.+|+++|+.+|.++.+.|||+|+.+....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 67899999999999999999999999999999976554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=1.7e-06 Score=96.70 Aligned_cols=67 Identities=13% Similarity=0.193 Sum_probs=33.3
Q ss_pred hhcCccceEEEEecc-ccccccCCC-------------CCCCCCC--CCceeEEEEecCCCCchhhHHHHhhhcCCCcce
Q 047476 289 LRQLEIVRVLTVCSF-LLQVIPHAE-------------EPFGMTV--PLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQT 352 (463)
Q Consensus 289 l~~l~~l~~L~l~~~-~~~~~~~~~-------------~~~~~~~--~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~ 352 (463)
+..+++|+.|.+.++ .++.+|... .....++ ..+++.|.|... .+..+..-+..+++|+.
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n----~i~~iP~si~~l~~L~~ 873 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT----GIEEVPWWIEKFSNLSF 873 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC----CCccChHHHhcCCCCCE
Confidence 456788888888654 234333221 0000000 014555554321 22334444567778888
Q ss_pred EEEEcCC
Q 047476 353 LTINIGP 359 (463)
Q Consensus 353 L~l~~~~ 359 (463)
|++..++
T Consensus 874 L~L~~C~ 880 (1153)
T PLN03210 874 LDMNGCN 880 (1153)
T ss_pred EECCCCC
Confidence 8776543
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.13 E-value=1.3e-06 Score=55.68 Aligned_cols=34 Identities=38% Similarity=0.610 Sum_probs=31.6
Q ss_pred CchHHHHHHHhcCCchhHHhhhccccchhhhhee
Q 047476 13 LTNDLVTVIISYLPFKEAARTSILSRRWRHIWLS 46 (463)
Q Consensus 13 LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~~ 46 (463)
||+|++.+|+++|+.+|.++++.+||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.06 E-value=5.1e-06 Score=92.13 Aligned_cols=66 Identities=21% Similarity=0.170 Sum_probs=32.5
Q ss_pred eCCcCcc-CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 142 DLPMHVY-GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 142 ~lp~~l~-~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
.+|..++ .+.+|++|+|+++.+. ......+++|++|+|++..++. .+...+.++++|+.|++.++.
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCc
Confidence 3454444 4556666666665543 1112345566666665554421 122224455556666655553
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.95 E-value=1.8e-05 Score=75.85 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=9.2
Q ss_pred hHHHHHHHHhccccccceee
Q 047476 406 EARFLNYLIFFGNVLQELNL 425 (463)
Q Consensus 406 e~~l~~~ll~~a~~L~~m~i 425 (463)
+..+++.+..+++.|+.+-|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 295 AQLLAESLLEPGNELESLWV 314 (319)
T ss_pred HHHHHHHHhhcCCchhhccc
Confidence 34444444444444444433
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.89 E-value=1.6e-05 Score=88.12 Aligned_cols=198 Identities=15% Similarity=0.063 Sum_probs=124.5
Q ss_pred CCcCccCCCceeEEEeeeeeeC---CCC-CCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-ccc
Q 047476 143 LPMHVYGHVGLESLELFSCNIN---ASR-FNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITV 217 (463)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~~~---~~~-~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~ 217 (463)
+|..+...++|+.|+|+++.+. |.. +..+++|+.|+|++..++... . ....+.|+.|++.++.-.+.+. .-.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHh
Confidence 4556667889999999998764 222 347899999999987664211 1 1357899999999986332221 123
Q ss_pred CCCCccEEEEecCCCC--ceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476 218 PNLRLKRLVIDKCDFN--QYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ 291 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~~--~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~ 291 (463)
.+++|+.|.+.+|.+. .....-..++|++|.++++... ..+.++++|+.+.+....-. .....-+..
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p~~l~~ 234 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-------GEIPYEIGG 234 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-------CcCChhHhc
Confidence 4669999999988741 1111234688999998876432 34567888888888743211 112233567
Q ss_pred CccceEEEEecccccc-ccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 292 LEIVRVLTVCSFLLQV-IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 292 l~~l~~L~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
+++++.|+++++.+.. ++.. +. ...+|++|.+..+.-. ..+..-+...++|+.|++...
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~---l~--~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSS---LG--NLKNLQYLFLYQNKLS---GPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred CCCCCEEECcCceeccccChh---Hh--CCCCCCEEECcCCeee---ccCchhHhhccCcCEEECcCC
Confidence 8999999997665431 2111 11 1116888887653211 122334567789999998644
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.86 E-value=1.9e-05 Score=88.54 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCceeEEEeeeeeeC--CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeecc-cCCCCccEE
Q 047476 150 HVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-VPNLRLKRL 225 (463)
Q Consensus 150 ~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~-~~~~~L~~L 225 (463)
..+|+.|+|.++.+. +.....+++|+.|+|+++. +. .+.. ++.+++|+.|.+.+|..+..+.-. ..+++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK--EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC--cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 356677777666553 2334567777777777643 11 1111 456777777777777655443211 234577777
Q ss_pred EEecCCCCceeEE--EECCCceEEEEeccc
Q 047476 226 VIDKCDFNQYRYE--IAAPNLRFWKYSGTE 253 (463)
Q Consensus 226 ~i~~c~~~~~~~~--i~aP~L~~l~~~g~~ 253 (463)
.+.+|. .+..+. +..++|+.|.++|+.
T Consensus 687 ~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 687 DMSRCE-NLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred eCCCCC-CcCccCCcCCCCCCCEEeCCCCC
Confidence 777775 333332 245667777776653
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.86 E-value=3.5e-06 Score=80.77 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=31.8
Q ss_pred cCCCceeEEEeeeeeeCC---CCCCCC---CccceEEeccEeechhHHHH---HHhcC-CCceEEeecccC
Q 047476 148 YGHVGLESLELFSCNINA---SRFNNF---IALKELSLGWIQLSVQSIRE---LLVQC-PFLESLSLKKCW 208 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~~~~---~~~~~l---~~L~~L~L~~~~~~~~~l~~---lls~c-p~Le~L~l~~c~ 208 (463)
..+++|+.|+|++|.+.. ..+..+ ++|+.|+++++.+++.+... .+..+ +.|++|.+.+|.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 345566666666665531 111122 33666666666655433322 23344 666666666665
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=9.9e-06 Score=73.17 Aligned_cols=152 Identities=19% Similarity=0.200 Sum_probs=101.3
Q ss_pred CccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCCCCC
Q 047476 89 IVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRF 168 (463)
Q Consensus 89 ~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~ 168 (463)
.++.+.+....-++ +|..- .|-.++++++++...+. .....+-..+.+|..|..|.|++|.+..+..
T Consensus 211 kLk~lSlEg~~LdD-~I~~~--iAkN~~L~~lnlsm~sG----------~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V 277 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDD-PIVNT--IAKNSNLVRLNLSMCSG----------FTENALQLLLSSCSRLDELNLSWCFLFTEKV 277 (419)
T ss_pred hhhhccccccccCc-HHHHH--Hhccccceeeccccccc----------cchhHHHHHHHhhhhHhhcCchHhhccchhh
Confidence 46666665432222 12222 23356889998876542 1122233345689999999999997653311
Q ss_pred -----CCCCccceEEeccEe--echhHHHHHHhcCCCceEEeecccCCCcee--ecccCCCCccEEEEecCCCC--ceeE
Q 047476 169 -----NNFIALKELSLGWIQ--LSVQSIRELLVQCPFLESLSLKKCWEIEYL--DITVPNLRLKRLVIDKCDFN--QYRY 237 (463)
Q Consensus 169 -----~~l~~L~~L~L~~~~--~~~~~l~~lls~cp~Le~L~l~~c~~~~~~--~i~~~~~~L~~L~i~~c~~~--~~~~ 237 (463)
.-=+.|+.|+|+++. +...++..+...||.|-+|+|++|..+..- .+-...+.|++|.+++|+.- .+.+
T Consensus 278 tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~ 357 (419)
T KOG2120|consen 278 TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL 357 (419)
T ss_pred hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee
Confidence 125789999999986 567799999999999999999999766542 22334569999999999842 2233
Q ss_pred EE-ECCCceEEEEeccc
Q 047476 238 EI-AAPNLRFWKYSGTE 253 (463)
Q Consensus 238 ~i-~aP~L~~l~~~g~~ 253 (463)
++ +.|.|.+|+..|+.
T Consensus 358 ~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccCcceEEEEecccc
Confidence 44 36788888777754
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.48 E-value=4.4e-05 Score=75.17 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=10.2
Q ss_pred HhhcCccceEEEEeccc
Q 047476 288 LLRQLEIVRVLTVCSFL 304 (463)
Q Consensus 288 ll~~l~~l~~L~l~~~~ 304 (463)
.+.++++++.|+|..+.
T Consensus 360 af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNE 376 (873)
T ss_pred HHHHhhhhhhhcCcCCe
Confidence 45566667777665443
No 16
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00046 Score=62.69 Aligned_cols=205 Identities=20% Similarity=0.156 Sum_probs=119.2
Q ss_pred CccCCCceeEEEeeeeeeCCCC----C-CCCCccceEEeccEeec-hhHHHHHHhcCCCceEEeecccCCCceee-cccC
Q 047476 146 HVYGHVGLESLELFSCNINASR----F-NNFIALKELSLGWIQLS-VQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVP 218 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~~~~----~-~~l~~L~~L~L~~~~~~-~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~ 218 (463)
.+++-..+.-|.+.+|.++..+ + ..+..++.|+|.+..++ ...+..++.+.|+|+.|+|....--..+. ...+
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 3334345566777788776432 1 25889999999999884 57899999999999999999654222222 2245
Q ss_pred CCCccEEEEecCCCC---ceeEEEECCCceEEEEecccce-ee-----ee-cCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476 219 NLRLKRLVIDKCDFN---QYRYEIAAPNLRFWKYSGTEGM-FR-----VE-RQNFLTEVELDFALQPDFDEEIGEFLYEL 288 (463)
Q Consensus 219 ~~~L~~L~i~~c~~~---~~~~~i~aP~L~~l~~~g~~~~-~~-----~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 288 (463)
..+|+.|.+.+.... .+...-+-|.++.|.++.+..+ +. .. -.|.+..++..-+.. ..-....++
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-----~~w~~~~~l 194 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-----QLWLNKNKL 194 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH-----HHHHHHHhH
Confidence 669999999876532 2223334677777766554211 00 00 011222222221110 002235667
Q ss_pred hhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476 289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG 360 (463)
Q Consensus 289 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~ 360 (463)
.+.++++..+.++...++....+. ....++.++ .|.|... .-.+|.+ +.-|..+|.|..|.+.-++.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek-~se~~p~~~--~LnL~~~-~idswas-vD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEK-GSEPFPSLS--CLNLGAN-NIDSWAS-VDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HhhcccchheeeecCcccchhhcc-cCCCCCcch--hhhhccc-ccccHHH-HHHHcCCchhheeeccCCcc
Confidence 788999999999988776555432 223333322 2333221 1123333 33477899999999866643
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.43 E-value=0.00012 Score=67.72 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=37.7
Q ss_pred CceeEEEeeeeeeCCC-------CCCCCCccceEEeccEeec---h------hHHHHHHhcCCCceEEeecccC-CCcee
Q 047476 151 VGLESLELFSCNINAS-------RFNNFIALKELSLGWIQLS---V------QSIRELLVQCPFLESLSLKKCW-EIEYL 213 (463)
Q Consensus 151 ~~L~~L~L~~~~~~~~-------~~~~l~~L~~L~L~~~~~~---~------~~l~~lls~cp~Le~L~l~~c~-~~~~~ 213 (463)
.+++.++|+|+++... .+.+-++|+.-+++++.-+ + ..+...+.+||+|+.|+|++.. +...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4556666666655321 2234445555555544211 1 1233334466666666666542 11111
Q ss_pred ----ecccCCCCccEEEEecCCC
Q 047476 214 ----DITVPNLRLKRLVIDKCDF 232 (463)
Q Consensus 214 ----~i~~~~~~L~~L~i~~c~~ 232 (463)
..-+++..|++|.+.+|..
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCC
Confidence 1122245666666666653
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.37 E-value=4.2e-05 Score=72.31 Aligned_cols=198 Identities=19% Similarity=0.181 Sum_probs=121.0
Q ss_pred ccCCCceeEEEeeeee-eCCC----CCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceee---ccc
Q 047476 147 VYGHVGLESLELFSCN-INAS----RFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLD---ITV 217 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~-~~~~----~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---i~~ 217 (463)
.-.|++|++|.+++|. +... -..++..|+++.+.+|. ...+.+..+-..|+.+-++++..|..+++.. +..
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 3468888888888884 2221 22367778888777764 3566666666788888888888887666543 344
Q ss_pred CCCCccEEEEecCCCC----ceeEEEECCCceEEEEecccce-----eeee-cCCCccEEEEeeecCCCCchhHHHHHHH
Q 047476 218 PNLRLKRLVIDKCDFN----QYRYEIAAPNLRFWKYSGTEGM-----FRVE-RQNFLTEVELDFALQPDFDEEIGEFLYE 287 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~~----~~~~~i~aP~L~~l~~~g~~~~-----~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 287 (463)
.+..|+.|...+|... +..+.-.+++|+.+.+.++..- ..++ +.+.|+++.+.-+... ++..+..
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~-----~d~tL~s 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI-----TDGTLAS 366 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee-----hhhhHhh
Confidence 4557788888877641 2233445788888887776421 1222 4566777766533221 1445677
Q ss_pred HhhcCccceEEEEeccc---cc---cccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 288 LLRQLEIVRVLTVCSFL---LQ---VIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 288 ll~~l~~l~~L~l~~~~---~~---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
+-..++.++.|.++-.. -+ .+..+.... -.+..|+|..+.. ..+.....|.+||+||++++-
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~-----~~l~~lEL~n~p~--i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL-----EGLEVLELDNCPL--ITDATLEHLSICRNLERIELI 434 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccc-----cccceeeecCCCC--chHHHHHHHhhCcccceeeee
Confidence 77888999988886211 11 111111100 0355566655432 235788999999999996653
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=3.1e-05 Score=73.60 Aligned_cols=202 Identities=17% Similarity=0.179 Sum_probs=123.2
Q ss_pred CCCceeEEEeeeeeeCCC----CCCCCCccceEEeccEee-chhHHHHHHhcCCCceEEeecccCCC--ceeecccCCCC
Q 047476 149 GHVGLESLELFSCNINAS----RFNNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKCWEI--EYLDITVPNLR 221 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c~~~--~~~~i~~~~~~ 221 (463)
+...|+...|.++.+... ....||+++.|+|++.-+ ....+..+....|+||.|+|+...-. ..-......+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 345778888887766422 334799999999998766 56788899999999999999965311 11112223559
Q ss_pred ccEEEEecCCCC---ceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCcc
Q 047476 222 LKRLVIDKCDFN---QYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEI 294 (463)
Q Consensus 222 L~~L~i~~c~~~---~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~ 294 (463)
||.|.+..|.+. ...+....|+|+.|.+.++..- .+...+..|+++.|.-..-..++. ......+++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~------~~~~~~l~~ 272 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ------GYKVGTLPG 272 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc------ccccccccc
Confidence 999999999873 4455667899999998887421 122234457777776333222221 123456788
Q ss_pred ceEEEEeccccccccCCCC-CC-CCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 295 VRVLTVCSFLLQVIPHAEE-PF-GMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 295 l~~L~l~~~~~~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
+..|.++...+..+...+. .. ....+.+|++|.+.-... .+|..+ .-++..++|+.|.+...
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl-~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSL-NHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc-cccccc-chhhccchhhhhhcccc
Confidence 8888887655543322111 11 112233788888754321 122222 22556677777776443
No 20
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.23 E-value=0.00034 Score=39.10 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.2
Q ss_pred ccceEEeccEee-chhHHHHHHhcCC
Q 047476 173 ALKELSLGWIQL-SVQSIRELLVQCP 197 (463)
Q Consensus 173 ~L~~L~L~~~~~-~~~~l~~lls~cp 197 (463)
+||+|+|..|.+ ++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998 4558999999998
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.17 E-value=0.0002 Score=66.33 Aligned_cols=174 Identities=20% Similarity=0.191 Sum_probs=98.0
Q ss_pred CCCCccceEEeccEeec---hhHHHHHHhcCCCceEEeecccCCCcee---ecccCCCCccEEEEecCCCCceeEEEECC
Q 047476 169 NNFIALKELSLGWIQLS---VQSIRELLVQCPFLESLSLKKCWEIEYL---DITVPNLRLKRLVIDKCDFNQYRYEIAAP 242 (463)
Q Consensus 169 ~~l~~L~~L~L~~~~~~---~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~~~~~L~~L~i~~c~~~~~~~~i~aP 242 (463)
..+|+|++|+|+...++ ...+..++++|..|++|.|.+|- ++.. .+.. .|..|.. ....-+.|
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~---al~~l~~-------~kk~~~~~ 157 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR---ALFELAV-------NKKAASKP 157 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH---HHHHHHH-------HhccCCCc
Confidence 35667777777766663 36789999999999999999995 2221 1111 2222211 11122456
Q ss_pred CceEEEEecccce--------eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccC--CC
Q 047476 243 NLRFWKYSGTEGM--------FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPH--AE 312 (463)
Q Consensus 243 ~L~~l~~~g~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~--~~ 312 (463)
.|+.|.+..+... ..+...|.|+++.+...... ..+ ...+..-+..+++++.|+|..+++..... -.
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~--~eG-~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR--PEG-VTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc--Cch-hHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 6666665443210 13445577777777643221 110 22344456788999999998766542110 01
Q ss_pred CCCCCCCCCceeEEEEecCCCCc-hh-hHHHHhhhcCCCcceEEEEcC
Q 047476 313 EPFGMTVPLEVKHLTLNAGMHPH-EY-YGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 313 ~~~~~~~~~~L~~L~l~~~~~~~-~~-~~l~~lL~~~P~L~~L~l~~~ 358 (463)
..++..+ .|+.|.++.|.-.. .. .-+-.+-+..|+|+.|.+...
T Consensus 235 kaL~s~~--~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 235 KALSSWP--HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHhcccc--hheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 1111111 47888887765422 22 334445667899999998654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.17 E-value=0.00084 Score=70.84 Aligned_cols=97 Identities=20% Similarity=0.095 Sum_probs=60.2
Q ss_pred eCCcCccCCCceeEEEeeeeeeCC-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476 142 DLPMHVYGHVGLESLELFSCNINA-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL 220 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~ 220 (463)
.+|..+. ++|+.|.+.++.+.. +. ..++|++|+|++..++. +.. ..+.|++|.+.++. +..+.- ...
T Consensus 215 sLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~-L~~Lp~--lp~ 282 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNP-LTHLPA--LPS 282 (788)
T ss_pred cCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCCc-hhhhhh--chh
Confidence 5676554 378888888877652 22 35788999998876542 211 24678888888764 333221 123
Q ss_pred CccEEEEecCCCCceeEEEECCCceEEEEecc
Q 047476 221 RLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGT 252 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~ 252 (463)
+|+.|.+.++. +..+....|+|+.|.++++
T Consensus 283 ~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 283 GLCKLWIFGNQ--LTSLPVLPPGLQELSVSDN 312 (788)
T ss_pred hcCEEECcCCc--cccccccccccceeECCCC
Confidence 67778877775 3333334577888877765
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00016 Score=68.94 Aligned_cols=123 Identities=20% Similarity=0.098 Sum_probs=81.9
Q ss_pred CCCceeEEEeeeeeeCCC----CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecc-cCCCCcc
Q 047476 149 GHVGLESLELFSCNINAS----RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-VPNLRLK 223 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~-~~~~~L~ 223 (463)
..++|+.|.|+.+.+.-+ ....+++||.|.|++|.++..++..++..||.|+.|.+....+....... .-..+|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 456888888887766422 12368999999999999999999999999999999999987533322111 1134899
Q ss_pred EEEEecCCC-Cce--eEEEECCCceEEEEecccce-e---------eeecCCCccEEEEee
Q 047476 224 RLVIDKCDF-NQY--RYEIAAPNLRFWKYSGTEGM-F---------RVERQNFLTEVELDF 271 (463)
Q Consensus 224 ~L~i~~c~~-~~~--~~~i~aP~L~~l~~~g~~~~-~---------~~~~~~~L~~l~l~~ 271 (463)
.|++++..+ ... ...-.-|.|+.|.++.+... + .....|+|+.+.+.-
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence 999988764 111 22234577777766543221 1 123456677766653
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00044 Score=72.38 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=57.5
Q ss_pred CceeEEEeeeeeeCCC----C-CCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 151 VGLESLELFSCNINAS----R-FNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 151 ~~L~~L~L~~~~~~~~----~-~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
.+|++|+++|...-.. . ..-||+|++|.+++..+..+++..+..++|+|..|+|+++. +..+.--+.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 4788999887543211 1 23599999999999999888899999999999999999986 4444444445566666
Q ss_pred EEecC
Q 047476 226 VIDKC 230 (463)
Q Consensus 226 ~i~~c 230 (463)
.+.+-
T Consensus 201 ~mrnL 205 (699)
T KOG3665|consen 201 SMRNL 205 (699)
T ss_pred hccCC
Confidence 55443
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.05 E-value=0.00081 Score=70.96 Aligned_cols=33 Identities=24% Similarity=0.070 Sum_probs=22.0
Q ss_pred CCceeEEEeeeeeeC-CCCCCCCCccceEEeccEee
Q 047476 150 HVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQL 184 (463)
Q Consensus 150 ~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~ 184 (463)
.++|++|+|+++.+. .+. ..++|++|+|.+..+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL 274 (788)
T ss_pred CCCCcEEEecCCccCcccC--cccccceeeccCCch
Confidence 368899999988765 222 246777777776543
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=7.7e-05 Score=75.80 Aligned_cols=105 Identities=26% Similarity=0.288 Sum_probs=71.5
Q ss_pred ccCCCceeEEEeeee-eeC---C----CCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCcee---e
Q 047476 147 VYGHVGLESLELFSC-NIN---A----SRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYL---D 214 (463)
Q Consensus 147 l~~~~~L~~L~L~~~-~~~---~----~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~ 214 (463)
...|+.|+.|++++| ... + .....+++|+.|++..+. +++..+..+...||.||.|.+.+|..++.. .
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 456788899998873 211 1 112357888899998887 788888888888999999998888764432 3
Q ss_pred cccCCCCccEEEEecCCCC----ceeEEEECCCceEEEEec
Q 047476 215 ITVPNLRLKRLVIDKCDFN----QYRYEIAAPNLRFWKYSG 251 (463)
Q Consensus 215 i~~~~~~L~~L~i~~c~~~----~~~~~i~aP~L~~l~~~g 251 (463)
+...++.|++|.+..|... ...+...+|+|+.|.+.+
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 4555778999999888731 222233467777665444
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.86 E-value=0.00031 Score=69.41 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=26.4
Q ss_pred cCCCceeEEEeeeeeeC-CCCCCC-CCccceEEeccEeechhHHHHHHhcCCCceEEeecc
Q 047476 148 YGHVGLESLELFSCNIN-ASRFNN-FIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK 206 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~~~-~~~~~~-l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~ 206 (463)
++.++|+.+++..+.+. .|.+++ ..+|+.|+|.+..|+.-. ..-++..|.||.|+|+.
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDLSR 158 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecccccccc-HHHHHhHhhhhhhhhhh
Confidence 34455666666555543 233332 334666666554432111 01123445555555554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.78 E-value=0.0016 Score=55.84 Aligned_cols=81 Identities=23% Similarity=0.202 Sum_probs=29.9
Q ss_pred CCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC--CCceeecccCCCCccEEE
Q 047476 150 HVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW--EIEYLDITVPNLRLKRLV 226 (463)
Q Consensus 150 ~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~--~~~~~~i~~~~~~L~~L~ 226 (463)
+.+|+.|+|++|.+. .+.+..+++|++|++++..++.-+ +.+..+||.|+.|.+.+.. .+..+.--+.+++|+.|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 457888888888765 455667888888888877663211 1233568888888887653 222222223345555555
Q ss_pred EecCC
Q 047476 227 IDKCD 231 (463)
Q Consensus 227 i~~c~ 231 (463)
+.+++
T Consensus 120 L~~NP 124 (175)
T PF14580_consen 120 LEGNP 124 (175)
T ss_dssp -TT-G
T ss_pred ccCCc
Confidence 55544
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.69 E-value=0.00078 Score=71.29 Aligned_cols=21 Identities=10% Similarity=0.279 Sum_probs=14.7
Q ss_pred HHHHhhhcCCCcceEEEEcCC
Q 047476 339 GINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 339 ~l~~lL~~~P~L~~L~l~~~~ 359 (463)
.+..++..+|++..|.+...+
T Consensus 406 sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCC
Confidence 456666777888888886543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.66 E-value=0.002 Score=55.28 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=14.3
Q ss_pred HHHHhhhcCCCcceEEEEcCCC
Q 047476 339 GINFMLKSCPSLQTLTINIGPG 360 (463)
Q Consensus 339 ~l~~lL~~~P~L~~L~l~~~~~ 360 (463)
.=..++..+|+|+.|+-.....
T Consensus 131 YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 131 YRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHHHHHHH-TT-SEETTEETTS
T ss_pred HHHHHHHHcChhheeCCEEccH
Confidence 3455678899999998766643
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.58 E-value=0.0014 Score=45.63 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=31.8
Q ss_pred ceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeeccc
Q 047476 152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKC 207 (463)
Q Consensus 152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c 207 (463)
+|++|.+.+|.+. +..+.++++|++|++++..++.- -...+.++|.|+.|.+.++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 5667777766543 34556677777777776554210 0123556677777766665
No 32
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.55 E-value=3.1e-05 Score=76.80 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=112.5
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHH-HHHHhcCCCceEEeecccCCCceee-cc
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSI-RELLVQCPFLESLSLKKCWEIEYLD-IT 216 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l-~~lls~cp~Le~L~l~~c~~~~~~~-i~ 216 (463)
..+|..+|....|+.|+|+.+.+. |..+..-+++-.|+|++..|. .+ ..++.+..-|-.|+|++.. +..+. -.
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~ 169 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNR-LEMLPPQI 169 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccch-hhhcCHHH
Confidence 357777787788888888877664 445555667777777766442 11 1223344455566666543 22221 01
Q ss_pred cCCCCccEEEEecCCCCceeEEE----ECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHH
Q 047476 217 VPNLRLKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYE 287 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 287 (463)
..+..|++|.+++.+. ..+.+ +..+|+.|.+++.... .++.++.+|.++.+.... -..+.+
T Consensus 170 RRL~~LqtL~Ls~NPL--~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~--------Lp~vPe 239 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPL--NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN--------LPIVPE 239 (1255)
T ss_pred HHHhhhhhhhcCCChh--hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC--------CCcchH
Confidence 1234777788877763 22222 2334555566665432 345566667776665321 112345
Q ss_pred HhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 288 ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
.+-.+++++.|.|+++.+.-+..+...+. ++..|.++ .+.+..+..-+.+.|+|++|++....
T Consensus 240 cly~l~~LrrLNLS~N~iteL~~~~~~W~-----~lEtLNlS----rNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKITELNMTEGEWE-----NLETLNLS----RNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred HHhhhhhhheeccCcCceeeeeccHHHHh-----hhhhhccc----cchhccchHHHhhhHHHHHHHhccCc
Confidence 56678888899998876665544332221 45555543 23455677777788889988886543
No 33
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.35 E-value=0.0016 Score=66.08 Aligned_cols=62 Identities=32% Similarity=0.455 Sum_probs=40.3
Q ss_pred CCCccceEEeccEe-echhHHHHHHhcCCCceEEeeccc-CCCce-----eecccCCCCccEEEEecCC
Q 047476 170 NFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKC-WEIEY-----LDITVPNLRLKRLVIDKCD 231 (463)
Q Consensus 170 ~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c-~~~~~-----~~i~~~~~~L~~L~i~~c~ 231 (463)
.++.|+.|.+..+. +++..+..+...||.|++|.+.+| ..... ..+...+++|++|.+..|.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 37788888888764 466667777888888888888773 21111 1233445577777777665
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.20 E-value=0.0082 Score=63.70 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=57.6
Q ss_pred eCCcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCC
Q 047476 142 DLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLR 221 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~ 221 (463)
.+|..+. ++|+.|.|+++.+..-....+++|++|+|++..++. +..-+ .+.|+.|.|.+|. +..+.... .++
T Consensus 192 sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~-L~~LP~~l-~s~ 263 (754)
T PRK15370 192 TIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINR-ITELPERL-PSA 263 (754)
T ss_pred cCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCcccc--CChhh--hccccEEECcCCc-cCcCChhH-hCC
Confidence 4565443 468888888887652111234688888888776532 21111 2468888888775 33322111 136
Q ss_pred ccEEEEecCCCCceeEEEE-CCCceEEEEecc
Q 047476 222 LKRLVIDKCDFNQYRYEIA-APNLRFWKYSGT 252 (463)
Q Consensus 222 L~~L~i~~c~~~~~~~~i~-aP~L~~l~~~g~ 252 (463)
|+.|.++++.. ..+.-. .++|+.|.++++
T Consensus 264 L~~L~Ls~N~L--~~LP~~l~~sL~~L~Ls~N 293 (754)
T PRK15370 264 LQSLDLFHNKI--SCLPENLPEELRYLSVYDN 293 (754)
T ss_pred CCEEECcCCcc--CccccccCCCCcEEECCCC
Confidence 88888876652 222211 246777777765
No 35
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.96 E-value=7.7e-05 Score=74.06 Aligned_cols=201 Identities=16% Similarity=0.158 Sum_probs=86.5
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecc-c
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-V 217 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~-~ 217 (463)
.||..+.+...|++|.|+++.+. ...+.++.+|..|++++..-+...+..-+.+..+|.+++++... +..+.-+ -
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHh
Confidence 45555555555666666555332 22233344445555554432222222233344455555555332 2221100 1
Q ss_pred CCCCccEEEEecCCCCceeEEEE---CCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476 218 PNLRLKRLVIDKCDFNQYRYEIA---APNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ 291 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~~~~~~~i~---aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~ 291 (463)
..++|++|.+++.. ++.+... =-+|++|.++.+... --+..++.|+++...... ..|+ .+.+=++.
T Consensus 243 ~l~~LrrLNLS~N~--iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~Fe-----GiPSGIGK 314 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK--ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTFE-----GIPSGIGK 314 (1255)
T ss_pred hhhhhheeccCcCc--eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cccc-----CCccchhh
Confidence 13366666666554 2222211 135566665554322 122334556665554211 1111 11111233
Q ss_pred CccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476 292 LEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG 360 (463)
Q Consensus 292 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~ 360 (463)
+.+++.++...+.++.+|.+-. +-..|+.|.|.-. .+..+..-+.-.|.|+.|+++..+.
T Consensus 315 L~~Levf~aanN~LElVPEglc-----RC~kL~kL~L~~N----rLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLELVPEGLC-----RCVKLQKLKLDHN----RLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhhHHHHhhccccccCchhhh-----hhHHHHHhccccc----ceeechhhhhhcCCcceeeccCCcC
Confidence 4455555555555665554311 0014555555321 1122333334457778888765543
No 36
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.14 E-value=0.00086 Score=56.01 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=32.5
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeeccc
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKC 207 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c 207 (463)
..+|..+-...+|+.|.+.++.+. |++..++|.|+.|.+.-.++ ..+..=+..+|.||.|++.+.
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhcccc
Confidence 345555555556666666665543 34455566666665543211 111122344566666666654
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.05 E-value=0.0041 Score=63.37 Aligned_cols=196 Identities=20% Similarity=0.212 Sum_probs=98.1
Q ss_pred CCCCccEEEEEEeCCcchh----HHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeee
Q 047476 86 NATIVKAFRLVFSRPVNFL----VQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSC 161 (463)
Q Consensus 86 ~~~~l~~l~l~~~~~~~~~----i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~ 161 (463)
.|++++.|+.......+.. +...++..- +.+.+.+.-.+ ...++. |..++.+.+|++|.|.+|
T Consensus 53 ~g~~~~~f~a~~s~~ads~vl~qLq~i~d~lq--kt~~lkl~~~p----------a~~pt~-pi~ifpF~sLr~LElrg~ 119 (1096)
T KOG1859|consen 53 SGAPVDYFRAYVSDNADSRVLEQLQRILDFLQ--KTKVLKLLPSP----------ARDPTE-PISIFPFRSLRVLELRGC 119 (1096)
T ss_pred CCCCCceeEEecCCcccchHHHHHHHHHHHHh--hheeeeecccC----------CCCCCC-CceeccccceeeEEecCc
Confidence 3578999988776665544 334444432 22333332111 112223 778888999999999999
Q ss_pred eeCC-CCCCCC-CccceEEeccEeechhHHHHHHhc---------------------------------CCCceEEeecc
Q 047476 162 NINA-SRFNNF-IALKELSLGWIQLSVQSIRELLVQ---------------------------------CPFLESLSLKK 206 (463)
Q Consensus 162 ~~~~-~~~~~l-~~L~~L~L~~~~~~~~~l~~lls~---------------------------------cp~Le~L~l~~ 206 (463)
.+.. -++..+ ..|++|-..+ +-.++..+++. .|.||.|+|+.
T Consensus 120 ~L~~~~GL~~lr~qLe~LIC~~---Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh 196 (1096)
T KOG1859|consen 120 DLSTAKGLQELRHQLEKLICHN---SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSH 196 (1096)
T ss_pred chhhhhhhHHHHHhhhhhhhhc---cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccch
Confidence 7643 111111 1233332221 12223333322 35566666665
Q ss_pred cCCCceeecccCCCCccEEEEecCCC-CceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHH
Q 047476 207 CWEIEYLDITVPNLRLKRLVIDKCDF-NQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGE 283 (463)
Q Consensus 207 c~~~~~~~i~~~~~~L~~L~i~~c~~-~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 283 (463)
.. +.....-..++.|++|+++.... ....+...+-+|..|.+.|+... .-+.++.+|..+.+.+..-. ++
T Consensus 197 Nk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~------~h 269 (1096)
T KOG1859|consen 197 NK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLS------EH 269 (1096)
T ss_pred hh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhh------cc
Confidence 43 23222223355777777765432 22333333445666766665433 23445566666655532211 12
Q ss_pred HHHHHhhcCccceEEEEeccc
Q 047476 284 FLYELLRQLEIVRVLTVCSFL 304 (463)
Q Consensus 284 ~~~~ll~~l~~l~~L~l~~~~ 304 (463)
.-...+..+..++.|.|.|+.
T Consensus 270 seL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 270 SELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhHHHHHHHHHHHhhcCCc
Confidence 223345566666666666543
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.78 E-value=0.013 Score=53.58 Aligned_cols=242 Identities=16% Similarity=0.106 Sum_probs=135.8
Q ss_pred ceeCCcCccCCCceeEEEeeeee-------eCC----CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 140 VFDLPMHVYGHVGLESLELFSCN-------INA----SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~-------~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
.+.+.+.+--|..|+.|..++.. +.+ ..+..|++|+++.++.+ +.+.+..+...=|.|+++.+++..
T Consensus 171 k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~--~~~~i~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 171 KYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL--STENIVDIELLKPTLQTICVHNTT 248 (490)
T ss_pred ccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc--chhheeceeecCchhheeeeeccc
Confidence 34555545456688999887541 111 13346899999999988 666777777788999999988753
Q ss_pred CCceee-c--------------------cc---CCCCccEEEEecCCCC-ceeEEEECCCceEEEEecccce--eeeecC
Q 047476 209 EIEYLD-I--------------------TV---PNLRLKRLVIDKCDFN-QYRYEIAAPNLRFWKYSGTEGM--FRVERQ 261 (463)
Q Consensus 209 ~~~~~~-i--------------------~~---~~~~L~~L~i~~c~~~-~~~~~i~aP~L~~l~~~g~~~~--~~~~~~ 261 (463)
.-.... + .. .-..|+.|++++.... +..-.--+|.++.|.++.+... -.+..+
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L 328 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAEL 328 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhc
Confidence 111000 0 00 0124666666654420 1111223688888877654332 134556
Q ss_pred CCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHH-
Q 047476 262 NFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGI- 340 (463)
Q Consensus 262 ~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l- 340 (463)
++|+++.+.... -..+..+-..+-|++.|.|.++.++.++... +-.+|.+|++..+ .+..+
T Consensus 329 ~~L~~LDLS~N~--------Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~------KLYSLvnLDl~~N----~Ie~ld 390 (490)
T KOG1259|consen 329 PQLQLLDLSGNL--------LAECVGWHLKLGNIKTLKLAQNKIETLSGLR------KLYSLVNLDLSSN----QIEELD 390 (490)
T ss_pred ccceEeecccch--------hHhhhhhHhhhcCEeeeehhhhhHhhhhhhH------hhhhheecccccc----chhhHH
Confidence 777777766321 1223334456778888888777666554221 1125666666442 22222
Q ss_pred -HHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHh
Q 047476 341 -NFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIF 415 (463)
Q Consensus 341 -~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~ 415 (463)
..-+.+.|.||.|.+...+.....+|. ... . .-+...--+|.+.|-.++..|++-+..+..
T Consensus 391 eV~~IG~LPCLE~l~L~~NPl~~~vdYR----TKV---L-------a~FGERaSE~~LD~~~~~~~ELDTV~Vl~A 452 (490)
T KOG1259|consen 391 EVNHIGNLPCLETLRLTGNPLAGSVDYR----TKV---L-------ARFGERASEISLDNEPGNQQELDTVLVLSA 452 (490)
T ss_pred HhcccccccHHHHHhhcCCCccccchHH----HHH---H-------HHHhhhhhheecCCCCcchhhhhHHHHHHH
Confidence 334678999999999766543322111 000 0 111122345677777788888887776543
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.28 E-value=0.016 Score=53.47 Aligned_cols=37 Identities=19% Similarity=0.509 Sum_probs=34.8
Q ss_pred cccccCCc----hHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476 7 VDMFSKLT----NDLVTVIISYLPFKEAARTSILSRRWRHI 43 (463)
Q Consensus 7 ~D~is~LP----d~lL~~ILs~Lp~~d~~rts~lSrrWr~l 43 (463)
.|-|+.|| |++...|||+|+..++..+-.+||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 57899999 99999999999999999999999999964
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.99 E-value=0.026 Score=59.39 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=63.7
Q ss_pred HHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCC
Q 047476 283 EFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRR 362 (463)
Q Consensus 283 ~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~ 362 (463)
..+..+..++|+|.+|++++..+..+. |-..++ ||+.|.+..- .-.+...+.. |-...+|+.|+|.......
T Consensus 163 ~dF~~lc~sFpNL~sLDIS~TnI~nl~-GIS~Lk-----nLq~L~mrnL-e~e~~~~l~~-LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 163 DDFSQLCASFPNLRSLDISGTNISNLS-GISRLK-----NLQVLSMRNL-EFESYQDLID-LFNLKKLRVLDISRDKNND 234 (699)
T ss_pred hhHHHHhhccCccceeecCCCCccCcH-HHhccc-----cHHHHhccCC-CCCchhhHHH-HhcccCCCeeecccccccc
Confidence 346677788888888888776555331 111011 3333433211 1111122222 2346788888886664321
Q ss_pred CCCCCCCCCCCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeee
Q 047476 363 FPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLY 426 (463)
Q Consensus 363 ~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~ 426 (463)
.. . ....+ -+|.. -|-++.+.++.|++-.-+++.-++..=|.|+.+..-
T Consensus 235 ~~------~-ii~qY-------lec~~-~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 235 DT------K-IIEQY-------LECGM-VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ch------H-HHHHH-------HHhcc-cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 10 0 00111 14432 244555555668887778888888877777777743
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.95 E-value=0.047 Score=34.97 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=19.8
Q ss_pred CccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 172 IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
++|++|+|++..++ ++...+++||.|+.|++.++.
T Consensus 1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCC
Confidence 35666666666443 244445667777777777664
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.75 E-value=0.03 Score=35.87 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=25.0
Q ss_pred CceeEEEeeeeeeC--CCCCCCCCccceEEeccEeec
Q 047476 151 VGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLS 185 (463)
Q Consensus 151 ~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~ 185 (463)
++|++|+|+++.+. ++.+..|++|+.|++++..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 36788888888775 233778999999999887664
No 43
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.15 E-value=0.017 Score=60.61 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=55.0
Q ss_pred CCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476 150 HVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV 226 (463)
Q Consensus 150 ~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~ 226 (463)
.+.|+.|+|+++++. ...+..|+.|+.|.|++..+ ..+..-+..|+.|++|....-. +..+.=-..++.|+.++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL--~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL--TTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLD 458 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchh--hhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEe
Confidence 345555555555432 22334555555555555432 2233445567777777665433 11111112356899999
Q ss_pred EecCCCCceeEEE----ECCCceEEEEeccc
Q 047476 227 IDKCDFNQYRYEI----AAPNLRFWKYSGTE 253 (463)
Q Consensus 227 i~~c~~~~~~~~i----~aP~L~~l~~~g~~ 253 (463)
++.... ..+.+ ..|+|++|+++|+.
T Consensus 459 lS~N~L--~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNL--SEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchh--hhhhhhhhCCCcccceeeccCCc
Confidence 987653 33322 23799999999976
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=93.02 E-value=0.13 Score=35.51 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=34.0
Q ss_pred eeCCcCc-cCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe
Q 047476 141 FDLPMHV-YGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ 183 (463)
Q Consensus 141 ~~lp~~l-~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~ 183 (463)
..+|... ..+++|++|+++++.+. +..|.++++|++|++++..
T Consensus 14 ~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 14 TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3566544 45889999999998654 5678899999999998753
No 45
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.86 E-value=0.061 Score=51.73 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=33.1
Q ss_pred ccCCchHHHHHHHhcCC-chhHHhhhccccchhhhhee
Q 047476 10 FSKLTNDLVTVIISYLP-FKEAARTSILSRRWRHIWLS 46 (463)
Q Consensus 10 is~LPd~lL~~ILs~Lp-~~d~~rts~lSrrWr~lw~~ 46 (463)
-|+||+|+|..|..+|| .-|.+|.+.|||.||..-..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 57899999999999997 47999999999999986554
No 46
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.77 E-value=0.0073 Score=50.60 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=39.0
Q ss_pred ceeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechh
Q 047476 140 VFDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQ 187 (463)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~ 187 (463)
.-.+|..+.+.+.|+.|.++-+++. |.+|++||.|+.|+|....+++.
T Consensus 68 ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 68 IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 4578989999999999999877654 67899999999999987755443
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.61 E-value=0.38 Score=41.77 Aligned_cols=58 Identities=26% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCceeEEEeeeeeeC--CCCC-CCCCccceEEeccEee-chhHHHHHHhcCCCceEEeeccc
Q 047476 149 GHVGLESLELFSCNIN--ASRF-NNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKC 207 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~--~~~~-~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c 207 (463)
..+.|.+|.|.++++. .+.+ .-+|+|++|.|.+..+ .-++++. +..||.|+.|.+.+-
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN 123 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence 3456677777666543 1222 2366677777766544 2334433 345666666666654
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.59 E-value=0.17 Score=49.46 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=43.6
Q ss_pred CCCccceEEeccEeechhHHHHHHhcCC-CceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEE
Q 047476 170 NFIALKELSLGWIQLSVQSIRELLVQCP-FLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWK 248 (463)
Q Consensus 170 ~l~~L~~L~L~~~~~~~~~l~~lls~cp-~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~ 248 (463)
.+++++.|+++++.+. .+. ..| .|++|.+.+|..+..+.-.. .++|++|.+.+|. .+.. --++|+.|.
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs-~L~s---LP~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCP-EISG---LPESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcc-cccc---cccccceEE
Confidence 3566777777766331 111 223 47777777776654432111 1367777777764 2222 134566666
Q ss_pred EecccceeeeecCC-CccEEEE
Q 047476 249 YSGTEGMFRVERQN-FLTEVEL 269 (463)
Q Consensus 249 ~~g~~~~~~~~~~~-~L~~l~l 269 (463)
+.+... ..+..+| +|+++.+
T Consensus 119 L~~n~~-~~L~~LPssLk~L~I 139 (426)
T PRK15386 119 IKGSAT-DSIKNVPNGLTSLSI 139 (426)
T ss_pred eCCCCC-cccccCcchHhheec
Confidence 543221 1234444 3665555
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.42 E-value=0.033 Score=48.10 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=48.8
Q ss_pred ceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeecc--cCCCCccEE
Q 047476 152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT--VPNLRLKRL 225 (463)
Q Consensus 152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~--~~~~~L~~L 225 (463)
.++.++=+++.+- -..+.+++.++.|.+.+|. +++..++.+-...|+|++|+|++|..++...+. ..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4455544444332 1233467777888888775 577777777777788888888888766543321 223466666
Q ss_pred EEecCC
Q 047476 226 VIDKCD 231 (463)
Q Consensus 226 ~i~~c~ 231 (463)
.+.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 655443
No 50
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.39 E-value=0.071 Score=49.07 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=31.0
Q ss_pred ccccCCchHHHHHHHh-----cCCchhHHhhhccccchhhh
Q 047476 8 DMFSKLTNDLVTVIIS-----YLPFKEAARTSILSRRWRHI 43 (463)
Q Consensus 8 D~is~LPd~lL~~ILs-----~Lp~~d~~rts~lSrrWr~l 43 (463)
+.|+.||||||..||. .++.++..++|+|||.|+..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 4578999999999986 45679999999999999863
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.11 E-value=0.071 Score=47.94 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=57.6
Q ss_pred CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEee-chhHHHHHHhcCCCceEEeecccCC--CceeecccCCCCccE
Q 047476 149 GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKCWE--IEYLDITVPNLRLKR 224 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c~~--~~~~~i~~~~~~L~~ 224 (463)
....|+.|++.++.+. ...+..+|+||+|.++...+ ...++.-++..||+|..|++++... +..+.-.....+|.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3456778888888765 35666789999999998754 3456777788899999999997641 222222223446777
Q ss_pred EEEecCC
Q 047476 225 LVIDKCD 231 (463)
Q Consensus 225 L~i~~c~ 231 (463)
|.+.+|.
T Consensus 121 Ldl~n~~ 127 (260)
T KOG2739|consen 121 LDLFNCS 127 (260)
T ss_pred hhcccCC
Confidence 7777776
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.10 E-value=0.16 Score=46.66 Aligned_cols=153 Identities=15% Similarity=0.002 Sum_probs=91.9
Q ss_pred ccCCCceeEEEeeeeeeCCC--CC-CCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC----CCceeecccCC
Q 047476 147 VYGHVGLESLELFSCNINAS--RF-NNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW----EIEYLDITVPN 219 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~~~--~~-~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~----~~~~~~i~~~~ 219 (463)
+-+.+.|+.|.|+.+.+.++ .. ....+|++|.|.+..++.......++..|.+++|+++... .+.+-.+..-+
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS 172 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence 34567899999998877532 11 3567999999999988888899999999999999888653 12222233334
Q ss_pred CCccEEEEecCCCC----ceeEEEECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476 220 LRLKRLVIDKCDFN----QYRYEIAAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR 290 (463)
Q Consensus 220 ~~L~~L~i~~c~~~----~~~~~i~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~ 290 (463)
+.++.|....|.+. ...+.---|++..+-+..++.. ......|.+.-+.+.-..-. .-.-..-+.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id------swasvD~Ln 246 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID------SWASVDALN 246 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc------cHHHHHHHc
Confidence 47888888888741 1222223567766655443221 11223333332222211111 122234477
Q ss_pred cCccceEEEEecccc
Q 047476 291 QLEIVRVLTVCSFLL 305 (463)
Q Consensus 291 ~l~~l~~L~l~~~~~ 305 (463)
+++.+..|.+..+.+
T Consensus 247 ~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPL 261 (418)
T ss_pred CCchhheeeccCCcc
Confidence 888888888876543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.21 E-value=0.27 Score=42.70 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=68.9
Q ss_pred ceeEEEeeeeeeC-CCCCCCCCccceEEeccEeec--hhHHHHHHhcCCCceEEeecccC--CCceeecccCCCCccEEE
Q 047476 152 GLESLELFSCNIN-ASRFNNFIALKELSLGWIQLS--VQSIRELLVQCPFLESLSLKKCW--EIEYLDITVPNLRLKRLV 226 (463)
Q Consensus 152 ~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~--~~~l~~lls~cp~Le~L~l~~c~--~~~~~~i~~~~~~L~~L~ 226 (463)
....++|+.+.+. ...+..+++|.+|.|....|+ +..+..+ .|+|..|.+.+.+ .++++.-...||+|+.|+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566667666553 456778999999999988764 3445443 4899999999854 244454445688999999
Q ss_pred EecCCCC----ceeEEE-ECCCceEEEEeccc
Q 047476 227 IDKCDFN----QYRYEI-AAPNLRFWKYSGTE 253 (463)
Q Consensus 227 i~~c~~~----~~~~~i-~aP~L~~l~~~g~~ 253 (463)
+-+.+.. .....+ --|+|+.|++.+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9877641 222333 47999999998753
No 54
>PLN03150 hypothetical protein; Provisional
Probab=91.18 E-value=0.21 Score=52.54 Aligned_cols=80 Identities=15% Similarity=0.057 Sum_probs=58.2
Q ss_pred ceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEE
Q 047476 152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVI 227 (463)
Q Consensus 152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i 227 (463)
.++.|.|.++.+. +..+..+++|+.|+|++..+.. .+...+..++.|+.|+|.++.-.+.+. .-..+++|+.|.+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4788899888764 4456789999999999876542 344457889999999999886433322 1234669999999
Q ss_pred ecCCC
Q 047476 228 DKCDF 232 (463)
Q Consensus 228 ~~c~~ 232 (463)
.++.+
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 98864
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.78 E-value=0.84 Score=41.60 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=79.7
Q ss_pred HHHHhcCCCceEEeecccC-CCcee----ecccCCCCccEEEEecCCCC---------------ceeEEEECCCceEEEE
Q 047476 190 RELLVQCPFLESLSLKKCW-EIEYL----DITVPNLRLKRLVIDKCDFN---------------QYRYEIAAPNLRFWKY 249 (463)
Q Consensus 190 ~~lls~cp~Le~L~l~~c~-~~~~~----~i~~~~~~L~~L~i~~c~~~---------------~~~~~i~aP~L~~l~~ 249 (463)
-..+..||+|+..+|++.. +.+.. ..-+.+..|++|.+.+|..+ ...-.-++|.|+++.+
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 3345577777777777543 21111 12233456777777777531 1122346899999876
Q ss_pred ecccce--------eeeecCCCccEEEEeeecCCCCchhHHHHHHH--HhhcCccceEEEEeccccccccCCCCCCCCCC
Q 047476 250 SGTEGM--------FRVERQNFLTEVELDFALQPDFDEEIGEFLYE--LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTV 319 (463)
Q Consensus 250 ~g~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~--ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~ 319 (463)
..+... ..+.+--.|+.+.|....-.. . +-...- =+..+.+++.|+|..+++....... .....+
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp-e---gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~-La~al~ 239 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRP-E---GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY-LADALC 239 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc-c---hhHHHHHHHHHHhCcceeeeccccchhhhhHHH-HHHHhc
Confidence 443210 112222357777776432211 0 111111 1356788999998776654211000 000011
Q ss_pred CC-ceeEEEEecCCCCchhhHHHHhhh-----cCCCcceEEEEcC
Q 047476 320 PL-EVKHLTLNAGMHPHEYYGINFMLK-----SCPSLQTLTINIG 358 (463)
Q Consensus 320 ~~-~L~~L~l~~~~~~~~~~~l~~lL~-----~~P~L~~L~l~~~ 358 (463)
.. +|+.|.++.|.-.. .+...+++ ..|+|..|..+..
T Consensus 240 ~W~~lrEL~lnDClls~--~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 240 EWNLLRELRLNDCLLSN--EGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred ccchhhhccccchhhcc--ccHHHHHHHhhhhcCCCccccccchh
Confidence 11 46888887766432 23444444 3567766665443
No 56
>PLN03150 hypothetical protein; Provisional
Probab=88.38 E-value=0.44 Score=50.14 Aligned_cols=80 Identities=18% Similarity=0.059 Sum_probs=51.4
Q ss_pred ccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEEecCCCC--ceeEEEECCCceEEEE
Q 047476 173 ALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVIDKCDFN--QYRYEIAAPNLRFWKY 249 (463)
Q Consensus 173 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i~~c~~~--~~~~~i~aP~L~~l~~ 249 (463)
.++.|+|.+..+.. .+..-+..++.|+.|+|.++.-.+.+. ....+++|+.|.++++.+. .....-..++|+.|.+
T Consensus 419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47788888765532 233446788999999999876333332 2234668999999888742 1111224678888888
Q ss_pred eccc
Q 047476 250 SGTE 253 (463)
Q Consensus 250 ~g~~ 253 (463)
+++.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 7753
No 57
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.06 E-value=0.28 Score=27.24 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=14.4
Q ss_pred CCCceEEeecccCCCcee
Q 047476 196 CPFLESLSLKKCWEIEYL 213 (463)
Q Consensus 196 cp~Le~L~l~~c~~~~~~ 213 (463)
||.|+.|+|.+|..+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 788888888888876654
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.53 E-value=0.14 Score=46.20 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=49.5
Q ss_pred hcCCCceEEeecccCCCceeecccCCCCccEEEEecCCC----CceeEEEECCCceEEEEeccccee--eee---cCCCc
Q 047476 194 VQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDF----NQYRYEIAAPNLRFWKYSGTEGMF--RVE---RQNFL 264 (463)
Q Consensus 194 s~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~----~~~~~~i~aP~L~~l~~~g~~~~~--~~~---~~~~L 264 (463)
...-.|+.|++.+|...+..... .+++||.|.++...+ .+..+...+|+|+++.++|+...+ ++. .+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 33444444445554322221111 144777777766532 244445567999999988876542 222 23334
Q ss_pred cEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476 265 TEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301 (463)
Q Consensus 265 ~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~ 301 (463)
..+.+..+...+.+ ..-.....-+++++.|+-+
T Consensus 119 ~~Ldl~n~~~~~l~----dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLD----DYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccc----cHHHHHHHHhhhhcccccc
Confidence 44444444333221 1122334445666555543
No 59
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=87.25 E-value=0.047 Score=50.04 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecc
Q 047476 150 HVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK 206 (463)
Q Consensus 150 ~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~ 206 (463)
+..|++|+|+++.+. .....-.|.++.|.+++..+.. +++ +...|+|..|++++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSG 338 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeeccc
Confidence 344555555554433 1222234555555555443311 111 23345555555554
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.14 E-value=0.83 Score=44.76 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred ceeEEEeeeee-eC-CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEe
Q 047476 152 GLESLELFSCN-IN-ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVID 228 (463)
Q Consensus 152 ~L~~L~L~~~~-~~-~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~ 228 (463)
+|++|.+.+|. +. .+.. -.++|+.|.+.+|. +. .+ -+.|+.|.+.... ...+. .--++|+.|.+.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~n~-~~~L~--~LPssLk~L~I~ 140 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEIS-----GL---PESVRSLEIKGSA-TDSIK--NVPNGLTSLSIN 140 (426)
T ss_pred CCcEEEccCCCCcccCCch-hhhhhhheEccCccccc-----cc---ccccceEEeCCCC-Ccccc--cCcchHhheecc
Confidence 58888887763 21 1111 12467888877662 21 11 2457777765321 22211 111267777764
Q ss_pred cCCCCceeEE---EECCCceEEEEecccceeeeecCC-CccEEEEe
Q 047476 229 KCDFNQYRYE---IAAPNLRFWKYSGTEGMFRVERQN-FLTEVELD 270 (463)
Q Consensus 229 ~c~~~~~~~~---i~aP~L~~l~~~g~~~~~~~~~~~-~L~~l~l~ 270 (463)
++.. ..... .--++|+.|.+.++........+| +|+.+.+.
T Consensus 141 ~~n~-~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls 185 (426)
T PRK15386 141 SYNP-ENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLH 185 (426)
T ss_pred cccc-ccccccccccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence 3321 11111 112578888887654332222333 47777664
No 61
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=85.37 E-value=0.085 Score=55.64 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=36.1
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecc
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK 206 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~ 206 (463)
..+|.......+|+.|.|.++.+. |..+..+.+|..|+++...+. .+.-.+..|..++.+...+
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~ 146 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG--PIPLVIEVLTAEEELAASN 146 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC--CCchhHHhhhHHHHHhhhc
Confidence 355655555667777777776543 445556777777777765442 2222344444555444443
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=84.58 E-value=0.52 Score=51.32 Aligned_cols=81 Identities=16% Similarity=0.136 Sum_probs=37.1
Q ss_pred CceeEEEeeeeeeC-CCCCCCCCccceEEeccEee-chhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEE
Q 047476 151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVI 227 (463)
Q Consensus 151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i 227 (463)
...++..+.++.+. .+.-..++.|++|-+....- -...-..++...|.|..|++++|.....+. .-+.+=+||.|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34555555544332 22223455666666655421 001112224456666666666665444332 1111235666666
Q ss_pred ecCC
Q 047476 228 DKCD 231 (463)
Q Consensus 228 ~~c~ 231 (463)
.++.
T Consensus 603 ~~t~ 606 (889)
T KOG4658|consen 603 SDTG 606 (889)
T ss_pred cCCC
Confidence 5554
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.24 E-value=0.44 Score=48.79 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=36.4
Q ss_pred CccccccCCchHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476 5 DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI 43 (463)
Q Consensus 5 ~~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l 43 (463)
...|.|+.||-|+..+||++|+.++.+..+.+|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 457999999999999999999999999999999999965
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.60 E-value=0.56 Score=46.31 Aligned_cols=161 Identities=20% Similarity=0.134 Sum_probs=89.2
Q ss_pred CceeEEEeeeeeeC-CCC-CCCC-CccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEE
Q 047476 151 VGLESLELFSCNIN-ASR-FNNF-IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLV 226 (463)
Q Consensus 151 ~~L~~L~L~~~~~~-~~~-~~~l-~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~ 226 (463)
..++.|.+.+..+. .+. ...+ ++|+.|++.+..+. .+..-+..+|.|+.|.+.++.- ..+. .....+.|+.|.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhhee
Confidence 56888888877664 222 2334 38999999876442 2223467899999999999873 3332 221455899999
Q ss_pred EecCCCCceeEEE--ECCC-ceEEEEeccc-ce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEE
Q 047476 227 IDKCDFNQYRYEI--AAPN-LRFWKYSGTE-GM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTV 300 (463)
Q Consensus 227 i~~c~~~~~~~~i--~aP~-L~~l~~~g~~-~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l 300 (463)
+++..+ ..+.- ..++ |+++...+.. .. ..+...+.+..+.+.... ...+...+..+++++.|.+
T Consensus 193 ls~N~i--~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~--------~~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 193 LSGNKI--SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK--------LEDLPESIGNLSNLETLDL 262 (394)
T ss_pred ccCCcc--ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce--------eeeccchhccccccceecc
Confidence 988763 33322 2444 7777776652 11 122333333333322110 0011245566777888887
Q ss_pred eccccccccCCCCCCCCCCCCceeEEEEec
Q 047476 301 CSFLLQVIPHAEEPFGMTVPLEVKHLTLNA 330 (463)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 330 (463)
+...+..++. .....++++|.+..
T Consensus 263 s~n~i~~i~~------~~~~~~l~~L~~s~ 286 (394)
T COG4886 263 SNNQISSISS------LGSLTNLRELDLSG 286 (394)
T ss_pred cccccccccc------ccccCccCEEeccC
Confidence 7655543332 11112566666654
No 65
>PF13013 F-box-like_2: F-box-like domain
Probab=82.18 E-value=0.79 Score=35.79 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=26.0
Q ss_pred cccCCchHHHHHHHhcCCchhHHhhhcccc
Q 047476 9 MFSKLTNDLVTVIISYLPFKEAARTSILSR 38 (463)
Q Consensus 9 ~is~LPd~lL~~ILs~Lp~~d~~rts~lSr 38 (463)
.+.+||+||+..|+.+-...+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 377899999999999999998887776666
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.90 E-value=1.3 Score=23.88 Aligned_cols=22 Identities=23% Similarity=0.166 Sum_probs=12.3
Q ss_pred CCccceEEeccEeechhHHHHH
Q 047476 171 FIALKELSLGWIQLSVQSIREL 192 (463)
Q Consensus 171 l~~L~~L~L~~~~~~~~~l~~l 192 (463)
+++|++|+|+++.+++.+...+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777766655443
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.30 E-value=0.94 Score=39.41 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=41.8
Q ss_pred cceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee---cccCCCCccEEEEecCC
Q 047476 174 LKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD---ITVPNLRLKRLVIDKCD 231 (463)
Q Consensus 174 L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---i~~~~~~L~~L~i~~c~ 231 (463)
++.++-+++.|...+++. +.+++.++.|.+.+|..+++.. +....++|+.|.|++|+
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~ 162 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP 162 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence 455556666666666666 4589999999999999887754 34456688888888887
No 68
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.52 E-value=0.32 Score=46.66 Aligned_cols=112 Identities=25% Similarity=0.270 Sum_probs=71.6
Q ss_pred cceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHH-HHHHhcCCCceEEeecccCCCceeecc
Q 047476 139 AVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSI-RELLVQCPFLESLSLKKCWEIEYLDIT 216 (463)
Q Consensus 139 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l-~~lls~cp~Le~L~l~~c~~~~~~~i~ 216 (463)
..-.+|..+....+|..|+|..+.+. .|.|.+|..|++|++....+ +.+ ..+.++.+.|-.|++++.. +......
T Consensus 194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNk-lke~Pde 270 (565)
T KOG0472|consen 194 LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDE 270 (565)
T ss_pred hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH--HhhHHHHhcccccceeeeccccc-cccCchH
Confidence 34568888888888888888877654 56888899999998876532 333 2344578888899998765 2222111
Q ss_pred -cCCCCccEEEEecCCCCceeEEEECCCceEEEEeccc
Q 047476 217 -VPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTE 253 (463)
Q Consensus 217 -~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~ 253 (463)
.-+.+|.+|++++.....-...+..-.|+.|.+.|.+
T Consensus 271 ~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred HHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc
Confidence 1133688888887763222223333366666777765
No 69
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.54 E-value=1.3 Score=42.70 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=29.0
Q ss_pred CcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEee
Q 047476 144 PMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQL 184 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~ 184 (463)
|..+...++|.-|+|+++-+. |.++.++..|++|+++..+|
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc
Confidence 334556678888888887654 45666777888888887654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.94 E-value=0.13 Score=46.76 Aligned_cols=106 Identities=24% Similarity=0.118 Sum_probs=49.8
Q ss_pred CCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEEEe
Q 047476 171 FIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYS 250 (463)
Q Consensus 171 l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~ 250 (463)
+.+.++|++.++.+++-. +....|.||.|.|+-.. +..+.--..|.+|++|.+..... +.|-.|
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I---------~sldEL--- 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCI---------ESLDEL--- 81 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhccc---------ccHHHH---
Confidence 455666677666554422 23355667766666332 33333233344555555433221 001110
Q ss_pred cccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEE
Q 047476 251 GTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLT 299 (463)
Q Consensus 251 g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~ 299 (463)
..+.++|+|+.++|.-..-..-.. ...-...++.+|+++.|+
T Consensus 82 -----~YLknlpsLr~LWL~ENPCc~~ag--~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 -----EYLKNLPSLRTLWLDENPCCGEAG--QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred -----HHHhcCchhhhHhhccCCcccccc--hhHHHHHHHHcccchhcc
Confidence 124566777777665321100000 222345667777777775
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.60 E-value=0.5 Score=43.13 Aligned_cols=55 Identities=29% Similarity=0.268 Sum_probs=32.5
Q ss_pred CceeEEEeeeeeeC-CCCCCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecc
Q 047476 151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKK 206 (463)
Q Consensus 151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~ 206 (463)
+.|+.|.|+-+.+. ...+..|.+|++|.|....|.+ +.+ .-+.+.|.|+.|.|..
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWLDE 97 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhhcc
Confidence 34566666655544 3445567777777777665532 233 2355777777777775
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=65.12 E-value=2.4 Score=41.88 Aligned_cols=153 Identities=20% Similarity=0.154 Sum_probs=87.5
Q ss_pred ceeCCcCccCCC-ceeEEEeeeeeeCC--CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecc
Q 047476 140 VFDLPMHVYGHV-GLESLELFSCNINA--SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT 216 (463)
Q Consensus 140 ~~~lp~~l~~~~-~L~~L~L~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~ 216 (463)
...+|....... +|+.|+++++.+.. .....+++|+.|.+....+ .++.......+.|+.|.+.+.. +..+...
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~ 204 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSNLNNLDLSGNK-ISDLPPE 204 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhhhhhhhhhhhheeccCCc-cccCchh
Confidence 345665555553 89999999988763 3667899999999998744 3444444588999999999875 3433322
Q ss_pred -cCCCCccEEEEecCCC-CceeEEEECCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476 217 -VPNLRLKRLVIDKCDF-NQYRYEIAAPNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ 291 (463)
Q Consensus 217 -~~~~~L~~L~i~~c~~-~~~~~~i~aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~ 291 (463)
.....|++|.+.+... ......-...++..+...+.... ..+..++.++.+.+.-..-. .+.. +..
T Consensus 205 ~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~--------~i~~-~~~ 275 (394)
T COG4886 205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--------SISS-LGS 275 (394)
T ss_pred hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc--------cccc-ccc
Confidence 1222488888876631 11111111233343333222211 23445555666665522111 1111 556
Q ss_pred CccceEEEEeccc
Q 047476 292 LEIVRVLTVCSFL 304 (463)
Q Consensus 292 l~~l~~L~l~~~~ 304 (463)
+.+++.|++++..
T Consensus 276 ~~~l~~L~~s~n~ 288 (394)
T COG4886 276 LTNLRELDLSGNS 288 (394)
T ss_pred cCccCEEeccCcc
Confidence 7788888887643
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=64.67 E-value=3.9 Score=20.03 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=3.8
Q ss_pred CceEEeeccc
Q 047476 198 FLESLSLKKC 207 (463)
Q Consensus 198 ~Le~L~l~~c 207 (463)
+|+.|+|.+|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=64.57 E-value=5.9 Score=20.77 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=8.5
Q ss_pred ceeEEEeeeeeeC
Q 047476 152 GLESLELFSCNIN 164 (463)
Q Consensus 152 ~L~~L~L~~~~~~ 164 (463)
+|++|+|++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677777777654
No 75
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=63.03 E-value=3.5 Score=45.07 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=57.5
Q ss_pred cCCCceeEEEeeeee--eC-CC--CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecc-cCCCC
Q 047476 148 YGHVGLESLELFSCN--IN-AS--RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-VPNLR 221 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~--~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~-~~~~~ 221 (463)
..|+.|++|-+.++. +. .+ -|..+|.|+.|+|+++ .....+..-++..-+|+.|++.++. +..+... ..+..
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKK 619 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHh
Confidence 345678888887764 22 22 2567888888888863 2334566667777788888888765 2222111 12335
Q ss_pred ccEEEEecCCCCceeE---EEECCCceEEEEecc
Q 047476 222 LKRLVIDKCDFNQYRY---EIAAPNLRFWKYSGT 252 (463)
Q Consensus 222 L~~L~i~~c~~~~~~~---~i~aP~L~~l~~~g~ 252 (463)
|.+|++.... ....+ .-..++|++|.+.+.
T Consensus 620 L~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 620 LIYLNLEVTG-RLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hheecccccc-ccccccchhhhcccccEEEeecc
Confidence 5566665443 11111 112466777765544
No 76
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=61.62 E-value=11 Score=24.81 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=26.7
Q ss_pred ceeEEEEecCCC-CchhhHHHHhhhcCCCcceEEEE
Q 047476 322 EVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 322 ~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
+|+.+.+....+ ..+...+..+|++++.|+++.|.
T Consensus 15 ~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 15 HLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred eeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 577777764333 35567788999999999999986
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=57.45 E-value=4.8 Score=40.05 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=42.8
Q ss_pred CCCceeEEEeeeeeeC-CCC-CCCCCccceEEeccEeec-hhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 149 GHVGLESLELFSCNIN-ASR-FNNFIALKELSLGWIQLS-VQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~-~~~-~~~l~~L~~L~L~~~~~~-~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
.+.+|+.|.+..+.+. ... ..++++|+.|+|++-.|+ -..+. .++.|+.|.+.+.. +..+.-...+..|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNL-ISDISGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCc-chhccCCccchhhhcc
Confidence 4456777777766654 233 456777777777766552 23332 33447777777654 2222222224466666
Q ss_pred EEecCC
Q 047476 226 VIDKCD 231 (463)
Q Consensus 226 ~i~~c~ 231 (463)
.+.++.
T Consensus 168 ~l~~n~ 173 (414)
T KOG0531|consen 168 DLSYNR 173 (414)
T ss_pred cCCcch
Confidence 666555
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=56.56 E-value=18 Score=28.80 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=26.2
Q ss_pred cCCCceeEEEeeee--eeCCCCCCCCCccceEEeccEeec-hhHHHHHHhcCCCceEEeecc
Q 047476 148 YGHVGLESLELFSC--NINASRFNNFIALKELSLGWIQLS-VQSIRELLVQCPFLESLSLKK 206 (463)
Q Consensus 148 ~~~~~L~~L~L~~~--~~~~~~~~~l~~L~~L~L~~~~~~-~~~l~~lls~cp~Le~L~l~~ 206 (463)
..|.+|+.+.+... .+....|.++++|+++.+... +. -+ ...+.+|+.|+.+.+..
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~--~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIG--DNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccc--eeeeecccccccccccc
Confidence 34557777776532 234455667777777777652 11 01 12346677777777754
No 79
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=46.83 E-value=14 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.2
Q ss_pred ccccCCchHHHHHHHhcCCchhHHh
Q 047476 8 DMFSKLTNDLVTVIISYLPFKEAAR 32 (463)
Q Consensus 8 D~is~LPd~lL~~ILs~Lp~~d~~r 32 (463)
...+.||-|+-..||++|+-+|...
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 5688999999999999999998754
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=44.77 E-value=20 Score=20.05 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=13.5
Q ss_pred CccceEEeccEeechhHHHH
Q 047476 172 IALKELSLGWIQLSVQSIRE 191 (463)
Q Consensus 172 ~~L~~L~L~~~~~~~~~l~~ 191 (463)
++|+.|+|++..+++.+...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 46778888877776655443
No 81
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.97 E-value=6 Score=35.91 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=38.2
Q ss_pred ccccCCchHHHHHHHhcCC-chhHHhhhccccch------hhhheecceeEeecccc
Q 047476 8 DMFSKLTNDLVTVIISYLP-FKEAARTSILSRRW------RHIWLSTKKIEFLESFF 57 (463)
Q Consensus 8 D~is~LPd~lL~~ILs~Lp-~~d~~rts~lSrrW------r~lw~~~~~l~~~~~~~ 57 (463)
=-+.+||.+++..|+.+|+ -+|+..++.+-..- +.+|+.+-.++|.+.++
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi 256 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQI 256 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3578999999999999997 79999887663222 46788877777766543
No 82
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=42.34 E-value=35 Score=33.25 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=53.0
Q ss_pred CCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCC
Q 047476 242 PNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGM 317 (463)
Q Consensus 242 P~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~ 317 (463)
|+|+++.++++... -.+..+..++++.++-.. ....-...+.++++++.|+|.++.++.+..+..
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-------l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF---- 342 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-------LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF---- 342 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-------HHHHHHHhhhccccceeeeecCCeeEEEecccc----
Confidence 55555555554322 124444455555554111 122334568899999999999888886654431
Q ss_pred CCCCceeEEEEecCCC--CchhhHHHHhhhc
Q 047476 318 TVPLEVKHLTLNAGMH--PHEYYGINFMLKS 346 (463)
Q Consensus 318 ~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~ 346 (463)
.+...+..|.|-...- ...+.|+..-|++
T Consensus 343 ~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred cccceeeeeehccCcccCccchHHHHHHHhh
Confidence 1112577777654332 3346788777775
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=41.79 E-value=1.6 Score=35.71 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=34.3
Q ss_pred CCCceeEEEeeeeeeC--CCCCC-CCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 149 GHVGLESLELFSCNIN--ASRFN-NFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~--~~~~~-~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
.-..|+..+|+++.+. |+.+. .||-+++|+|.+..+++-..+ +...|.|+.|++++..
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNP 111 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCc
Confidence 3345666666666554 23332 466777777777655433333 5667777777777654
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=40.28 E-value=4.8 Score=40.05 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=50.5
Q ss_pred ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeec-hhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCCc
Q 047476 147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLS-VQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLRL 222 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~-~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~L 222 (463)
+..+++|++|+|+++.+. ..++..++.|+.|.+.+..+. ...+. .++.|+.+++.++.. ..+.- ...+.+|
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~----~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l 188 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLE----SLKSLKLLDLSYNRI-VDIENDELSELISL 188 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCc----cchhhhcccCCcchh-hhhhhhhhhhccch
Confidence 445778899999888775 455666777888888887652 23332 267777777777652 22222 2334466
Q ss_pred cEEEEecCC
Q 047476 223 KRLVIDKCD 231 (463)
Q Consensus 223 ~~L~i~~c~ 231 (463)
+.+.+....
T Consensus 189 ~~l~l~~n~ 197 (414)
T KOG0531|consen 189 EELDLGGNS 197 (414)
T ss_pred HHHhccCCc
Confidence 666666554
No 85
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=38.66 E-value=33 Score=33.45 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=31.9
Q ss_pred CCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 150 HVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 150 ~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
.++|+.|+|+++.++ +..|.+...+++|.|....+.. .-..++.+...|+.|+|.+..
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCe
Confidence 456677777766543 3455566666666666543211 012334456667777776543
No 86
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=37.10 E-value=52 Score=23.19 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=27.9
Q ss_pred ceeEEEEecCC-CCchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476 322 EVKHLTLNAGM-HPHEYYGINFMLKSCPSLQTLTINIGPG 360 (463)
Q Consensus 322 ~L~~L~l~~~~-~~~~~~~l~~lL~~~P~L~~L~l~~~~~ 360 (463)
.|+.+.+.... ...+...+..||+++|.||++.|...+.
T Consensus 6 ~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~ 45 (72)
T smart00579 6 SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETS 45 (72)
T ss_pred eEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecC
Confidence 35666655432 2345677889999999999999987643
No 87
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=36.51 E-value=27 Score=32.26 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=14.6
Q ss_pred ccceEEeccEeechhHHHHHH----hcCCCceEEeecc
Q 047476 173 ALKELSLGWIQLSVQSIRELL----VQCPFLESLSLKK 206 (463)
Q Consensus 173 ~L~~L~L~~~~~~~~~l~~ll----s~cp~Le~L~l~~ 206 (463)
+|+++.+....|...++..++ ..|..||.|+|++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 444444444444333332222 2345555555554
No 88
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=35.07 E-value=9.4 Score=35.85 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=33.9
Q ss_pred cCCchHHHHHHHhcCCchhHHhhhccccchhhhheecce
Q 047476 11 SKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKK 49 (463)
Q Consensus 11 s~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~~~~~ 49 (463)
..+|+++++.|++++.-+++++.+.+|+|-..+=...|.
T Consensus 9 e~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~l 47 (386)
T KOG4408|consen 9 EWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPL 47 (386)
T ss_pred hhcccccceeeecccchhhhhcceeechHHhhhhhcccc
Confidence 458999999999999999999999999999876555553
No 89
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=32.71 E-value=1.3e+02 Score=24.16 Aligned_cols=119 Identities=13% Similarity=0.242 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCce
Q 047476 74 FINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGL 153 (463)
Q Consensus 74 ~~~~v~~~L~~~~~~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L 153 (463)
|.+.+..+|.......+++|.+.... ...+...+...-...++++.+.-.... ........++ .+.++
T Consensus 3 ~~~~l~~~l~s~~~l~vk~l~i~~~~--~~~~~~iL~~l~p~~L~~i~i~~~~~~------~~~~~i~~~e----qWk~~ 70 (142)
T PF01827_consen 3 FFEKLQEILKSKHKLKVKKLKINSLN--QSEVLSILPFLDPGVLEEIRINDEEEE------EDFDEIVELE----QWKNA 70 (142)
T ss_pred HHHHHHHHHcCCCCeeEEEEEEEcCC--HHHHHHHHhcCCCCcCEEEECcCcccc------cchhheeehH----Hhcee
Confidence 55666777766333456666665432 222777777766667898888111000 0111222333 56788
Q ss_pred eEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHH---HHhcCCCceEEee
Q 047476 154 ESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRE---LLVQCPFLESLSL 204 (463)
Q Consensus 154 ~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~---lls~cp~Le~L~l 204 (463)
+.+.+.+.......+..|.++....+..-.++.+++.. .+..-|.++.-.+
T Consensus 71 k~~~i~~~~~~~~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 71 KEFKIGGFVIDSFPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred heeEecccccccHHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 88888766443223455667777777544566555433 3455666666666
No 90
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=29.26 E-value=64 Score=24.46 Aligned_cols=31 Identities=13% Similarity=0.257 Sum_probs=21.0
Q ss_pred CCCccccccCCchHHHHHHHhcCCchhHHhh
Q 047476 3 DNDDVDMFSKLTNDLVTVIISYLPFKEAART 33 (463)
Q Consensus 3 ~~~~~D~is~LPd~lL~~ILs~Lp~~d~~rt 33 (463)
.+...+.|+.||++-+..|++.++..|++..
T Consensus 39 ~~~~~~il~~l~~~~~a~il~~m~~dd~~~l 69 (102)
T PF03448_consen 39 PDTQAEILEALSPEEAAEILAEMDSDDAADL 69 (102)
T ss_dssp CCCCCHCCCCS-HHHHHHHHCCS-HHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHccChHHHHHH
Confidence 3445667788888888888888888777654
No 91
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=24.45 E-value=20 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCccccccCCchHHHHHHHhcCCchhHHhh
Q 047476 4 NDDVDMFSKLTNDLVTVIISYLPFKEAART 33 (463)
Q Consensus 4 ~~~~D~is~LPd~lL~~ILs~Lp~~d~~rt 33 (463)
++..|.+..||++....|++.||..++...
T Consensus 64 dd~~~ll~~L~~~~~~~il~~l~~~~~~~i 93 (102)
T PF03448_consen 64 DDAADLLEELPEEQREKILAALDEEEREEI 93 (102)
T ss_dssp HHHHHHHCCSHHHHHHHHHHCS-HHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHcCCHHHHHHH
Confidence 344677889999999999999987666544
Done!