Query 047476
Match_columns 463
No_of_seqs 196 out of 1790
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 20:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.8 3.4E-20 1.2E-24 192.0 12.7 47 1-48 1-52 (592)
2 2p1m_B Transport inhibitor res 99.8 2.2E-19 7.6E-24 185.9 13.2 38 6-43 2-40 (594)
3 2ast_B S-phase kinase-associat 99.7 2.9E-18 1E-22 164.5 5.8 39 6-44 5-43 (336)
4 4fcg_A Uncharacterized protein 99.0 9.1E-10 3.1E-14 104.8 9.0 125 111-252 77-216 (328)
5 2p1m_B Transport inhibitor res 99.0 8.2E-09 2.8E-13 106.4 15.8 109 88-208 105-222 (594)
6 2ast_B S-phase kinase-associat 98.9 1.2E-09 4E-14 104.3 8.3 196 151-357 70-281 (336)
7 4fmz_A Internalin; leucine ric 98.9 7E-09 2.4E-13 99.3 13.2 235 147-428 84-321 (347)
8 2z80_A TOLL-like receptor 2, v 98.9 9.1E-08 3.1E-12 91.8 19.0 246 142-416 66-329 (353)
9 3ogk_B Coronatine-insensitive 98.8 1E-08 3.5E-13 105.7 8.9 200 148-359 290-524 (592)
10 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.3E-09 1.1E-13 71.1 3.4 40 5-44 4-43 (53)
11 1h6u_A Internalin H; cell adhe 98.7 3.8E-08 1.3E-12 92.6 9.3 171 143-358 56-227 (308)
12 1o6v_A Internalin A; bacterial 98.7 7.4E-08 2.5E-12 96.2 11.6 120 147-270 64-185 (466)
13 4fcg_A Uncharacterized protein 98.7 4.7E-08 1.6E-12 92.8 9.3 189 151-359 81-288 (328)
14 1o6v_A Internalin A; bacterial 98.7 1.1E-07 3.8E-12 94.9 12.3 231 147-428 108-341 (466)
15 1z7x_W Ribonuclease inhibitor; 98.7 2.4E-09 8.3E-14 106.8 -0.1 39 390-428 341-380 (461)
16 2z81_A CD282 antigen, TOLL-lik 98.6 7.6E-07 2.6E-11 90.7 16.7 205 144-359 43-262 (549)
17 4fmz_A Internalin; leucine ric 98.6 9.1E-08 3.1E-12 91.5 8.2 250 114-428 43-297 (347)
18 1z7x_W Ribonuclease inhibitor; 98.6 6.6E-09 2.3E-13 103.6 -0.2 258 151-427 142-436 (461)
19 3bz5_A Internalin-J, INLJ; leu 98.5 1.9E-07 6.3E-12 92.9 9.6 178 149-356 83-262 (457)
20 3o6n_A APL1; leucine-rich repe 98.5 2.7E-07 9.1E-12 89.8 10.6 193 147-358 113-328 (390)
21 2z66_A Variable lymphocyte rec 98.5 3.7E-08 1.3E-12 92.5 3.8 242 141-415 20-275 (306)
22 2z63_A TOLL-like receptor 4, v 98.5 2.3E-07 7.7E-12 95.0 9.5 238 143-418 297-549 (570)
23 2ca6_A RAN GTPase-activating p 98.5 3.4E-08 1.2E-12 96.1 2.9 63 146-208 55-133 (386)
24 2ca6_A RAN GTPase-activating p 98.5 6.9E-08 2.4E-12 93.9 4.4 106 147-253 90-227 (386)
25 3zyi_A Leucine-rich repeat-con 98.5 3.2E-07 1.1E-11 91.2 8.6 187 147-345 119-316 (452)
26 3e4g_A ATP synthase subunit S, 98.5 1.4E-07 4.8E-12 79.8 5.1 91 141-231 51-150 (176)
27 3v47_A TOLL-like receptor 5B a 98.4 4.5E-07 1.6E-11 90.0 9.6 64 144-207 96-164 (455)
28 1h6u_A Internalin H; cell adhe 98.4 6E-07 2E-11 84.4 9.6 138 115-270 63-203 (308)
29 3bz5_A Internalin-J, INLJ; leu 98.4 8.8E-07 3E-11 88.0 11.2 146 147-309 102-249 (457)
30 3oja_B Anopheles plasmodium-re 98.4 5E-07 1.7E-11 93.1 9.5 193 147-358 119-334 (597)
31 3oja_A Leucine-rich immune mol 98.4 7.2E-08 2.4E-12 96.8 2.9 77 147-231 54-131 (487)
32 3zyi_A Leucine-rich repeat-con 98.4 7.9E-07 2.7E-11 88.3 10.3 216 115-359 75-301 (452)
33 1ogq_A PGIP-2, polygalacturona 98.4 6.2E-08 2.1E-12 91.4 1.6 199 142-358 67-278 (313)
34 1ozn_A Reticulon 4 receptor; N 98.4 2.7E-07 9.4E-12 85.6 5.9 191 151-358 32-235 (285)
35 3t6q_A CD180 antigen; protein- 98.4 2.5E-07 8.7E-12 95.5 6.0 31 390-420 547-579 (606)
36 1xku_A Decorin; proteoglycan, 98.4 9E-07 3.1E-11 83.9 9.4 155 144-308 93-255 (330)
37 3rgz_A Protein brassinosteroid 98.4 6.6E-08 2.3E-12 102.8 1.1 198 143-358 116-328 (768)
38 3zyj_A Leucine-rich repeat-con 98.4 7.6E-07 2.6E-11 88.1 8.6 189 146-346 107-306 (440)
39 3rgz_A Protein brassinosteroid 98.3 5.7E-07 2E-11 95.5 8.0 193 148-358 148-353 (768)
40 2id5_A Lingo-1, leucine rich r 98.3 1.1E-06 3.9E-11 87.8 9.4 197 146-359 123-331 (477)
41 4eco_A Uncharacterized protein 98.3 7E-07 2.4E-11 92.7 8.1 204 143-359 239-468 (636)
42 3o53_A Protein LRIM1, AGAP0063 98.3 1.7E-07 5.8E-12 88.5 3.1 228 151-426 34-270 (317)
43 4ezg_A Putative uncharacterize 98.3 1.3E-06 4.5E-11 76.2 8.3 86 146-232 83-171 (197)
44 3o6n_A APL1; leucine-rich repe 98.3 1.9E-06 6.6E-11 83.7 10.4 233 89-358 46-305 (390)
45 3t6q_A CD180 antigen; protein- 98.3 2.9E-07 9.8E-12 95.1 4.5 199 147-358 274-486 (606)
46 3zyj_A Leucine-rich repeat-con 98.3 4.2E-07 1.5E-11 90.0 5.5 196 147-359 84-290 (440)
47 2id5_A Lingo-1, leucine rich r 98.3 9E-07 3.1E-11 88.5 7.9 197 144-358 73-282 (477)
48 2z80_A TOLL-like receptor 2, v 98.3 2E-06 6.8E-11 82.4 9.8 125 145-271 94-231 (353)
49 4ezg_A Putative uncharacterize 98.3 4.1E-07 1.4E-11 79.4 4.4 102 115-231 44-147 (197)
50 2z62_A TOLL-like receptor 4, v 98.3 8.1E-07 2.8E-11 81.9 6.5 203 141-359 20-235 (276)
51 1h6t_A Internalin B; cell adhe 98.3 9E-07 3.1E-11 82.4 6.8 81 147-231 64-145 (291)
52 4ecn_A Leucine-rich repeat pro 98.3 7.3E-07 2.5E-11 95.1 6.6 202 143-358 481-707 (876)
53 1m9s_A Internalin B; cell inva 98.3 6.3E-07 2.2E-11 92.1 5.8 82 146-231 60-142 (605)
54 3g06_A SSPH2 (leucine-rich rep 98.3 7.2E-07 2.5E-11 91.8 6.1 58 290-359 238-295 (622)
55 3goz_A Leucine-rich repeat-con 98.2 2.9E-07 9.9E-12 88.7 2.6 204 152-359 23-264 (362)
56 3g06_A SSPH2 (leucine-rich rep 98.2 7.2E-07 2.5E-11 91.8 5.4 53 291-358 199-251 (622)
57 3oja_B Anopheles plasmodium-re 98.2 2.3E-06 7.8E-11 88.2 8.6 211 115-359 75-312 (597)
58 1xku_A Decorin; proteoglycan, 98.2 2.7E-06 9.2E-11 80.6 8.5 200 142-356 114-327 (330)
59 3vq2_A TLR4, TOLL-like recepto 98.2 2.4E-07 8.3E-12 95.6 1.2 27 390-416 545-573 (606)
60 1wwl_A Monocyte differentiatio 98.2 1.8E-07 6.1E-12 88.2 -0.0 189 149-356 93-304 (312)
61 2o6q_A Variable lymphocyte rec 98.2 2.1E-06 7.1E-11 78.9 6.9 105 142-252 30-143 (270)
62 1ogq_A PGIP-2, polygalacturona 98.2 2.9E-07 9.9E-12 86.7 1.1 237 89-357 51-300 (313)
63 2z81_A CD282 antigen, TOLL-lik 98.2 8.9E-06 3E-10 82.7 12.0 61 290-359 448-508 (549)
64 1p9a_G Platelet glycoprotein I 98.2 2E-06 6.7E-11 80.0 6.1 187 142-348 24-224 (290)
65 3j0a_A TOLL-like receptor 5; m 98.2 4.1E-06 1.4E-10 89.9 9.4 105 144-253 283-392 (844)
66 1h6t_A Internalin B; cell adhe 98.1 2.7E-06 9.2E-11 79.1 6.7 77 151-231 46-123 (291)
67 3oja_A Leucine-rich immune mol 98.1 8.9E-07 3E-11 88.8 3.4 187 147-356 76-270 (487)
68 3rfs_A Internalin B, repeat mo 98.1 3.4E-06 1.1E-10 77.6 7.0 83 147-231 59-144 (272)
69 1m9s_A Internalin B; cell inva 98.1 1.6E-06 5.3E-11 89.1 4.8 102 147-252 83-185 (605)
70 2ra8_A Uncharacterized protein 98.1 1.5E-06 5.1E-11 83.3 4.2 62 187-250 162-227 (362)
71 1p9a_G Platelet glycoprotein I 98.1 3.7E-06 1.2E-10 78.2 6.8 196 147-360 6-207 (290)
72 3o53_A Protein LRIM1, AGAP0063 98.1 9.1E-07 3.1E-11 83.5 2.7 184 149-356 78-270 (317)
73 4ecn_A Leucine-rich repeat pro 98.1 3.5E-06 1.2E-10 89.9 6.5 87 142-231 506-606 (876)
74 2z66_A Variable lymphocyte rec 98.1 1.5E-06 5.3E-11 81.3 3.3 83 149-231 76-161 (306)
75 3rfs_A Internalin B, repeat mo 98.1 2.4E-06 8.4E-11 78.6 4.6 182 149-357 39-231 (272)
76 2z7x_B TOLL-like receptor 1, v 98.1 3.4E-05 1.1E-09 77.9 13.4 183 153-348 304-498 (520)
77 3j0a_A TOLL-like receptor 5; m 98.1 7E-06 2.4E-10 88.1 8.7 115 151-270 266-389 (844)
78 3vq2_A TLR4, TOLL-like recepto 98.0 2.6E-06 9E-11 87.8 5.0 194 147-360 346-557 (606)
79 3v47_A TOLL-like receptor 5B a 98.0 6E-06 2E-10 81.9 7.4 80 151-231 30-114 (455)
80 2ell_A Acidic leucine-rich nuc 98.0 3.4E-06 1.2E-10 71.4 4.5 89 142-232 40-132 (168)
81 4glp_A Monocyte differentiatio 98.0 4E-07 1.4E-11 85.7 -1.6 52 293-356 251-302 (310)
82 2ft3_A Biglycan; proteoglycan, 98.0 3.1E-06 1E-10 80.3 4.6 193 146-358 73-274 (332)
83 2z63_A TOLL-like receptor 4, v 98.0 3.7E-06 1.3E-10 86.0 5.2 244 143-428 274-528 (570)
84 2z7x_B TOLL-like receptor 1, v 98.0 7E-05 2.4E-09 75.5 14.3 61 142-208 83-149 (520)
85 2xwt_C Thyrotropin receptor; s 98.0 8.4E-06 2.9E-10 73.3 6.7 171 152-357 32-214 (239)
86 1xeu_A Internalin C; cellular 98.0 4.8E-06 1.6E-10 76.2 4.9 77 149-231 39-117 (263)
87 1ozn_A Reticulon 4 receptor; N 98.0 1.4E-05 4.8E-10 73.9 7.9 185 147-346 52-252 (285)
88 2e31_A FBS1, F-box only protei 98.0 3.5E-06 1.2E-10 77.1 3.4 36 8-43 49-85 (297)
89 4eco_A Uncharacterized protein 97.9 2.7E-06 9.3E-11 88.3 2.9 206 142-357 319-545 (636)
90 2je0_A Acidic leucine-rich nuc 97.9 3.7E-06 1.3E-10 69.5 2.8 89 142-232 33-125 (149)
91 2ft3_A Biglycan; proteoglycan, 97.9 1.7E-06 5.7E-11 82.2 0.5 97 151-252 54-157 (332)
92 3m19_A Variable lymphocyte rec 97.9 1E-05 3.5E-10 73.4 5.3 171 142-345 28-206 (251)
93 2ell_A Acidic leucine-rich nuc 97.9 7.1E-06 2.4E-10 69.4 3.8 19 342-360 141-159 (168)
94 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 0.00015 5.3E-09 73.8 13.9 64 290-359 350-414 (562)
95 2o6q_A Variable lymphocyte rec 97.8 1.5E-05 5.2E-10 73.1 5.8 152 146-332 56-216 (270)
96 3goz_A Leucine-rich repeat-con 97.8 2.7E-06 9.2E-11 81.8 0.7 69 285-354 216-287 (362)
97 3l2o_B F-box only protein 4; s 97.8 4.5E-06 1.5E-10 75.5 1.7 34 10-43 5-38 (312)
98 1jl5_A Outer protein YOPM; leu 97.8 1.2E-05 4E-10 79.8 4.7 32 152-183 132-164 (454)
99 1jl5_A Outer protein YOPM; leu 97.8 9E-06 3.1E-10 80.6 3.5 51 293-358 317-367 (454)
100 2xwt_C Thyrotropin receptor; s 97.8 2.2E-05 7.5E-10 70.5 5.6 83 146-230 50-140 (239)
101 3e4g_A ATP synthase subunit S, 97.8 2.3E-05 7.8E-10 66.2 4.9 60 171-231 60-125 (176)
102 2je0_A Acidic leucine-rich nuc 97.8 5.3E-06 1.8E-10 68.6 1.0 55 151-208 17-75 (149)
103 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 0.00012 4.2E-09 74.6 11.3 168 152-333 332-509 (562)
104 1ziw_A TOLL-like receptor 3; i 97.8 1.8E-05 6.2E-10 82.7 5.2 13 219-231 404-416 (680)
105 1ziw_A TOLL-like receptor 3; i 97.7 9.1E-06 3.1E-10 85.0 2.3 121 147-270 349-488 (680)
106 2z62_A TOLL-like receptor 4, v 97.7 3.1E-05 1.1E-09 71.2 5.6 174 146-332 47-235 (276)
107 4g8a_A TOLL-like receptor 4; l 97.7 0.00014 4.8E-09 75.0 10.4 205 140-358 43-259 (635)
108 4glp_A Monocyte differentiatio 97.7 7.8E-05 2.7E-09 69.8 7.4 148 148-305 142-306 (310)
109 3cvr_A Invasion plasmid antige 97.6 1.8E-05 6.2E-10 80.4 3.1 183 114-333 58-242 (571)
110 1wwl_A Monocyte differentiatio 97.6 0.00011 3.7E-09 68.9 8.1 194 88-305 95-308 (312)
111 3un9_A NLR family member X1; l 97.6 1.3E-05 4.5E-10 77.2 1.7 22 337-358 228-249 (372)
112 4ay9_X Follicle-stimulating ho 97.6 5.5E-05 1.9E-09 72.2 5.5 58 288-356 197-254 (350)
113 1xeu_A Internalin C; cellular 97.6 3.8E-05 1.3E-09 70.2 4.0 85 142-232 55-140 (263)
114 3cvr_A Invasion plasmid antige 97.6 0.00024 8.4E-09 72.1 10.2 89 151-252 100-190 (571)
115 3v7d_B Cell division control p 97.5 2.1E-05 7.4E-10 77.8 1.7 40 6-45 11-50 (464)
116 3m19_A Variable lymphocyte rec 97.5 5E-05 1.7E-09 68.7 3.7 103 146-252 54-165 (251)
117 1ds9_A Outer arm dynein; leuci 97.5 1.4E-06 4.9E-11 76.0 -6.9 83 146-231 43-126 (198)
118 3e6j_A Variable lymphocyte rec 97.5 6E-05 2E-09 67.2 3.5 89 140-232 31-124 (229)
119 2ra8_A Uncharacterized protein 97.4 0.0002 6.8E-09 68.4 6.7 153 74-231 93-263 (362)
120 2v9t_B SLIT homolog 2 protein 97.4 0.00011 3.8E-09 65.0 4.1 87 141-231 24-115 (220)
121 2o6s_A Variable lymphocyte rec 97.3 0.00014 5E-09 63.5 4.3 86 142-231 21-111 (208)
122 2ovr_B FBW7, F-BOX/WD repeat p 97.3 9.7E-05 3.3E-09 72.7 3.4 40 4-43 13-52 (445)
123 1p22_A F-BOX/WD-repeat protein 97.3 7.2E-05 2.5E-09 73.5 1.9 38 5-42 6-47 (435)
124 1a9n_A U2A', U2A'; complex (nu 97.2 0.00013 4.5E-09 62.0 2.3 79 151-231 42-124 (176)
125 4g8a_A TOLL-like receptor 4; l 97.1 0.0033 1.1E-07 64.6 12.7 124 115-253 52-184 (635)
126 2v9t_B SLIT homolog 2 protein 97.1 0.00036 1.2E-08 61.6 4.0 85 146-232 51-140 (220)
127 1dce_A Protein (RAB geranylger 97.0 0.00019 6.4E-09 73.1 1.7 55 173-231 442-497 (567)
128 1a9n_A U2A', U2A'; complex (nu 96.9 0.00022 7.5E-09 60.6 1.1 82 147-232 15-100 (176)
129 3e6j_A Variable lymphocyte rec 96.9 0.0004 1.4E-08 61.8 2.9 86 144-231 57-146 (229)
130 1ds9_A Outer arm dynein; leuci 96.9 1.3E-05 4.3E-10 69.9 -6.9 82 167-252 43-125 (198)
131 2o6s_A Variable lymphocyte rec 96.9 0.00045 1.5E-08 60.3 3.1 83 147-231 48-135 (208)
132 1dce_A Protein (RAB geranylger 96.8 0.00051 1.7E-08 69.9 3.2 85 142-231 455-544 (567)
133 2o6r_A Variable lymphocyte rec 96.8 0.00098 3.4E-08 56.5 4.3 87 142-232 21-112 (177)
134 2v70_A SLIT-2, SLIT homolog 2 96.8 0.00062 2.1E-08 60.1 3.1 86 142-231 25-116 (220)
135 3un9_A NLR family member X1; l 96.8 0.00032 1.1E-08 67.4 1.1 80 151-231 101-194 (372)
136 2wfh_A SLIT homolog 2 protein 96.7 0.00082 2.8E-08 58.0 3.4 86 142-231 24-113 (193)
137 2xot_A Amphoterin-induced prot 96.7 0.0017 6E-08 62.0 6.0 81 149-231 62-147 (361)
138 2v70_A SLIT-2, SLIT homolog 2 96.7 0.00076 2.6E-08 59.6 3.0 83 147-231 53-140 (220)
139 1w8a_A SLIT protein; signaling 96.7 0.0012 4.1E-08 56.8 4.2 86 142-231 22-113 (192)
140 3sb4_A Hypothetical leucine ri 96.6 0.0056 1.9E-07 57.5 8.7 97 241-355 225-328 (329)
141 2wfh_A SLIT homolog 2 protein 96.6 0.0027 9.4E-08 54.6 5.9 88 142-231 45-137 (193)
142 4b8c_D Glucose-repressible alc 96.5 0.00075 2.6E-08 70.9 1.5 88 142-232 238-328 (727)
143 3g39_A Variable lymphocyte rec 96.4 0.0029 9.9E-08 53.2 4.9 86 142-231 23-113 (170)
144 2r9u_A Variable lymphocyte rec 96.4 0.0029 1E-07 53.4 4.9 87 141-231 25-116 (174)
145 2xot_A Amphoterin-induced prot 96.4 0.0036 1.2E-07 59.8 6.0 106 141-252 31-146 (361)
146 4b8c_D Glucose-repressible alc 96.4 0.00061 2.1E-08 71.6 0.2 106 143-253 216-327 (727)
147 1io0_A Tropomodulin; LRR prote 96.3 0.0057 1.9E-07 52.2 6.0 60 149-208 34-104 (185)
148 2o6r_A Variable lymphocyte rec 96.3 0.0037 1.3E-07 52.8 4.6 87 143-231 43-135 (177)
149 1w8a_A SLIT protein; signaling 96.2 0.0044 1.5E-07 53.2 5.0 83 147-231 50-137 (192)
150 2ifg_A High affinity nerve gro 95.5 0.009 3.1E-07 56.5 4.2 89 141-232 22-115 (347)
151 1io0_A Tropomodulin; LRR prote 95.3 0.0097 3.3E-07 50.8 3.2 82 149-231 63-162 (185)
152 3sb4_A Hypothetical leucine ri 95.0 0.032 1.1E-06 52.3 6.1 82 219-310 225-314 (329)
153 4ay9_X Follicle-stimulating ho 95.0 0.025 8.5E-07 53.6 5.4 110 140-251 21-137 (350)
154 4fdw_A Leucine rich hypothetic 94.2 0.19 6.5E-06 48.4 9.7 12 344-355 319-330 (401)
155 2r9u_A Variable lymphocyte rec 92.9 0.05 1.7E-06 45.7 2.7 64 144-208 50-116 (174)
156 3g39_A Variable lymphocyte rec 92.5 0.063 2.1E-06 44.8 2.7 64 144-208 47-113 (170)
157 3rw6_A Nuclear RNA export fact 89.4 0.19 6.7E-06 45.2 3.0 59 194-253 167-231 (267)
158 4fdw_A Leucine rich hypothetic 87.8 1.2 4.2E-05 42.7 7.7 17 165-181 264-280 (401)
159 3rw6_A Nuclear RNA export fact 87.4 0.18 6.2E-06 45.5 1.4 57 150-208 169-231 (267)
160 2ifg_A High affinity nerve gro 81.9 0.44 1.5E-05 44.6 1.4 61 146-208 51-114 (347)
161 4fs7_A Uncharacterized protein 78.4 1.8 6E-05 41.3 4.4 111 148-267 273-393 (394)
162 4gt6_A Cell surface protein; l 75.7 4.5 0.00015 38.4 6.5 101 147-253 261-368 (394)
163 1pgv_A TMD-1, tropomodulin TMD 74.6 3.4 0.00012 35.1 4.6 19 338-356 147-165 (197)
164 4gt6_A Cell surface protein; l 73.6 2.7 9.4E-05 39.9 4.3 132 152-302 243-387 (394)
165 1pgv_A TMD-1, tropomodulin TMD 71.5 2.3 7.8E-05 36.2 2.8 18 105-122 29-48 (197)
166 4fs7_A Uncharacterized protein 65.7 10 0.00036 35.8 6.5 35 147-181 226-262 (394)
167 3rfe_A Platelet glycoprotein I 50.5 11 0.00038 29.3 3.1 41 142-184 24-67 (130)
168 4h09_A Hypothetical leucine ri 48.4 16 0.00054 34.2 4.4 77 147-228 236-318 (379)
169 4h09_A Hypothetical leucine ri 44.3 14 0.00047 34.6 3.3 74 148-227 260-340 (379)
170 2kwv_A RAD30 homolog B, DNA po 34.8 31 0.0011 21.1 2.5 21 4-24 15-35 (48)
171 2lz0_A Uncharacterized protein 25.4 49 0.0017 24.3 2.9 32 149-180 18-51 (100)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=3.4e-20 Score=191.96 Aligned_cols=47 Identities=26% Similarity=0.507 Sum_probs=33.7
Q ss_pred CCCCCcccccc----CCchHHHHHHHhcC-CchhHHhhhccccchhhhheecc
Q 047476 1 MADNDDVDMFS----KLTNDLVTVIISYL-PFKEAARTSILSRRWRHIWLSTK 48 (463)
Q Consensus 1 ~~~~~~~D~is----~LPd~lL~~ILs~L-p~~d~~rts~lSrrWr~lw~~~~ 48 (463)
|++ ++.||++ +||||++.+||+|| |.+|++++++|||||++++...+
T Consensus 1 m~~-~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~ 52 (592)
T 3ogk_B 1 MED-PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR 52 (592)
T ss_dssp ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CCC-hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccc
Confidence 553 4567777 89999999999999 89999999999999999865443
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2.2e-19 Score=185.89 Aligned_cols=38 Identities=13% Similarity=0.394 Sum_probs=29.5
Q ss_pred ccccccCCchHHHHHHHhcCC-chhHHhhhccccchhhh
Q 047476 6 DVDMFSKLTNDLVTVIISYLP-FKEAARTSILSRRWRHI 43 (463)
Q Consensus 6 ~~D~is~LPd~lL~~ILs~Lp-~~d~~rts~lSrrWr~l 43 (463)
..|+++.||||+|.+||++|| .+|+++++.|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 359999999999999999999 99999999999999988
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=2.9e-18 Score=164.49 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=35.1
Q ss_pred ccccccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476 6 DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW 44 (463)
Q Consensus 6 ~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw 44 (463)
+...+++||||++.+||++|+.+|+++++.|||||+.+.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~ 43 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 345689999999999999999999999999999999985
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.98 E-value=9.1e-10 Score=104.78 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=84.0
Q ss_pred HHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhH
Q 047476 111 FAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQS 188 (463)
Q Consensus 111 ~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~ 188 (463)
.+...+++.|++.... ...+|..+..+++|++|+|+++.+. +..+..+++|++|+|++..++ .
T Consensus 77 ~~~~~~l~~L~L~~n~-------------l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~ 141 (328)
T 4fcg_A 77 DATQPGRVALELRSVP-------------LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--A 141 (328)
T ss_dssp HHTSTTCCEEEEESSC-------------CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--C
T ss_pred cccccceeEEEccCCC-------------chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--c
Confidence 3334677888775321 2267888888999999999998775 345678999999999998765 3
Q ss_pred HHHHHhcCCCceEEeecccCCCceeeccc----------CCCCccEEEEecCCCCceeEE---EECCCceEEEEecc
Q 047476 189 IRELLVQCPFLESLSLKKCWEIEYLDITV----------PNLRLKRLVIDKCDFNQYRYE---IAAPNLRFWKYSGT 252 (463)
Q Consensus 189 l~~lls~cp~Le~L~l~~c~~~~~~~i~~----------~~~~L~~L~i~~c~~~~~~~~---i~aP~L~~l~~~g~ 252 (463)
+..-+.+++.|+.|++.+|...+.+.... .+++|+.|.+.+|.+. .+. -..++|++|.++++
T Consensus 142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESS
T ss_pred CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCC
Confidence 44457889999999999987655443211 2557777777776531 111 12345555555544
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=8.2e-09 Score=106.39 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=68.6
Q ss_pred CCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCCCC
Q 047476 88 TIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASR 167 (463)
Q Consensus 88 ~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~ 167 (463)
+.++.+.+......+..+...... .+++++|++.... ......++....+|++|++|+|.+|.+....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~--~~~L~~L~L~~~~----------~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~ 172 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKS--FKNFKVLVLSSCE----------GFSTDGLAAIAATCRNLKELDLRESDVDDVS 172 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHH--CTTCCEEEEESCE----------EEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHh--CCCCcEEeCCCcC----------CCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence 357777777543222112111111 3578888775321 0111124433446889999999988764321
Q ss_pred -------CCCCCccceEEeccEe--echhHHHHHHhcCCCceEEeecccC
Q 047476 168 -------FNNFIALKELSLGWIQ--LSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 168 -------~~~l~~L~~L~L~~~~--~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
...+++|++|+|+++. ++...+..++.+||.|+.|++.+|.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 1267899999999885 6778888888889999999998873
No 6
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.95 E-value=1.2e-09 Score=104.27 Aligned_cols=196 Identities=18% Similarity=0.150 Sum_probs=89.5
Q ss_pred CceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCce-eecccCCCCccEEEE
Q 047476 151 VGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEY-LDITVPNLRLKRLVI 227 (463)
Q Consensus 151 ~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~-~~i~~~~~~L~~L~i 227 (463)
++++.|++.++.+. .+....+++|++|+|+++.+++..+..++.+||.|+.|++.+|.-... ...-..+++|++|.+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 34555555554443 122334555555555555555555555555555555555555531111 111122445555555
Q ss_pred ecCC-CC---ceeEEEECCCceEEEEecc-cce-----eeeecCC-CccEEEEeeec-CCCCchhHHHHHHHHhhcCccc
Q 047476 228 DKCD-FN---QYRYEIAAPNLRFWKYSGT-EGM-----FRVERQN-FLTEVELDFAL-QPDFDEEIGEFLYELLRQLEIV 295 (463)
Q Consensus 228 ~~c~-~~---~~~~~i~aP~L~~l~~~g~-~~~-----~~~~~~~-~L~~l~l~~~~-~~~~~~~~~~~~~~ll~~l~~l 295 (463)
.+|. +. ...+.-..|+|++|.++++ ... ..+..+| +|+.+.+..+. ... +..+...+..++++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-----~~~l~~~~~~~~~L 224 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ-----KSDLSTLVRRCPNL 224 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC-----HHHHHHHHHHCTTC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC-----HHHHHHHHhhCCCC
Confidence 5552 11 0111112455555555554 211 1234456 66666665331 110 23444556667777
Q ss_pred eEEEEeccc-cccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476 296 RVLTVCSFL-LQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI 357 (463)
Q Consensus 296 ~~L~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~ 357 (463)
+.|.++++. +.... ...+. ...+|++|.+..+... ...++ ..+..+|+|+.|++..
T Consensus 225 ~~L~l~~~~~l~~~~--~~~l~--~l~~L~~L~l~~~~~~-~~~~~-~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 225 VHLDLSDSVMLKNDC--FQEFF--QLNYLQHLSLSRCYDI-IPETL-LELGEIPTLKTLQVFG 281 (336)
T ss_dssp SEEECTTCTTCCGGG--GGGGG--GCTTCCEEECTTCTTC-CGGGG-GGGGGCTTCCEEECTT
T ss_pred CEEeCCCCCcCCHHH--HHHHh--CCCCCCEeeCCCCCCC-CHHHH-HHHhcCCCCCEEeccC
Confidence 777776543 21100 00000 0125777777654311 11122 3345677777777743
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.93 E-value=7e-09 Score=99.34 Aligned_cols=235 Identities=15% Similarity=0.046 Sum_probs=133.7
Q ss_pred ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
+..+++|++|+|++|.+. .+.+..+++|++|++++..+..-.- +..++.|+.|++.+|.....+.....+++|+.|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 556677888888877664 3446677888888888776533211 667888888888877655554444556678888
Q ss_pred EEecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecc
Q 047476 226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSF 303 (463)
Q Consensus 226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~ 303 (463)
.+.+|........-..++|++|.++++... ..+..+++|+.+.+....-.... .+..+++++.|.+++.
T Consensus 161 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 161 TVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT---------PVANMTRLNSLKIGNN 231 (347)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG---------GGGGCTTCCEEECCSS
T ss_pred EecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc---------hhhcCCcCCEEEccCC
Confidence 887776321111113577777777765332 12455666777766543221110 1566778888888766
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccccc
Q 047476 304 LLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIV 383 (463)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 383 (463)
.+..++. .....+|++|.+..+.-. .+ ..+..+|+|+.|++...... . + ..
T Consensus 232 ~l~~~~~------~~~l~~L~~L~l~~n~l~----~~-~~~~~l~~L~~L~l~~n~l~------------~---~---~~ 282 (347)
T 4fmz_A 232 KITDLSP------LANLSQLTWLEIGTNQIS----DI-NAVKDLTKLKMLNVGSNQIS------------D---I---SV 282 (347)
T ss_dssp CCCCCGG------GTTCTTCCEEECCSSCCC----CC-GGGTTCTTCCEEECCSSCCC------------C---C---GG
T ss_pred ccCCCcc------hhcCCCCCEEECCCCccC----CC-hhHhcCCCcCEEEccCCccC------------C---C---hh
Confidence 5543321 111126777777654211 11 23667788888877543211 0 0 00
Q ss_pred cccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476 384 LYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS 428 (463)
Q Consensus 384 ~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~ 428 (463)
+ ....+|+.+.+.+..-..... ..+.+.+.|+.+.+...
T Consensus 283 ~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 283 L--NNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp G--GGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEECCSS
T ss_pred h--cCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEccCC
Confidence 0 122667777777654332222 23445677887777654
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.89 E-value=9.1e-08 Score=91.84 Aligned_cols=246 Identities=15% Similarity=0.109 Sum_probs=154.5
Q ss_pred eCCc-CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee---
Q 047476 142 DLPM-HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--- 214 (463)
Q Consensus 142 ~lp~-~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--- 214 (463)
.+|. .+..+++|++|+|+++.+. +..+..+++|++|+|++..++.- -...+.+++.|+.|++.++. +..+.
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 143 (353)
T 2z80_A 66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNP-YKTLGETS 143 (353)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCC-CSSSCSSC
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCC-CcccCchh
Confidence 3444 5667899999999998764 45678899999999999876531 12346889999999999885 33332
Q ss_pred cccCCCCccEEEEecCCCCceeEE---E-ECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHH
Q 047476 215 ITVPNLRLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLY 286 (463)
Q Consensus 215 i~~~~~~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 286 (463)
.-..+++|+.|.+.+|. ....+. + ..++|++|.+++.... ..+..+++|+.+.+....-. ....
T Consensus 144 ~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------~~~~ 215 (353)
T 2z80_A 144 LFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-------LLLE 215 (353)
T ss_dssp SCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-------THHH
T ss_pred hhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-------cchh
Confidence 23457799999999985 123321 1 2578999999886533 23556788888888744321 1122
Q ss_pred HHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC-CchhhHHHHhhhcCCCcceEEEEcCCCCCCCC
Q 047476 287 ELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTLTINIGPGRRFPN 365 (463)
Q Consensus 287 ~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~ 365 (463)
.+...+++++.|.+++..+...+....... ...-.++.+.+....- ......+...+..+|+|++|++....-...
T Consensus 216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i-- 292 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTDLDTFHFSELSTG-ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV-- 292 (353)
T ss_dssp HHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC--
T ss_pred hhhhhcccccEEECCCCccccccccccccc-cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc--
Confidence 345678999999998876654432111000 0011456666654322 233456777789999999999965432110
Q ss_pred CCCCCCCCchhhhccccccccccccceeEEEEEe--eecchhhHHHHHHHHhc
Q 047476 366 YRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRG--FKGTMTEARFLNYLIFF 416 (463)
Q Consensus 366 ~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~--f~g~~~e~~l~~~ll~~ 416 (463)
+..++ ....+|+.+.+.+ +.+....+..+...+++
T Consensus 293 ---------------~~~~~-~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 293 ---------------PDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp ---------------CTTTT-TTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred ---------------CHHHH-hcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 00000 1236899999887 34554456555555544
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.78 E-value=1e-08 Score=105.67 Aligned_cols=200 Identities=11% Similarity=0.005 Sum_probs=89.9
Q ss_pred cCCCceeEEEeeeeeeCCCC----CCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecc----------cCCCcee
Q 047476 148 YGHVGLESLELFSCNINASR----FNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK----------CWEIEYL 213 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~~~~~~----~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~----------c~~~~~~ 213 (463)
..+++|++|+|++|.+.... +..+++|++|++. ..+++..+..+..+||.|+.|++.+ |..++..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 34445555555555432111 1345555555555 2234444555555555555555553 4333322
Q ss_pred e---cccCCCCccEEEEecCCCCc---eeEEEECCCceEEEEecccc--ee-----------eeecCCCccEEEEeeecC
Q 047476 214 D---ITVPNLRLKRLVIDKCDFNQ---YRYEIAAPNLRFWKYSGTEG--MF-----------RVERQNFLTEVELDFALQ 274 (463)
Q Consensus 214 ~---i~~~~~~L~~L~i~~c~~~~---~~~~i~aP~L~~l~~~g~~~--~~-----------~~~~~~~L~~l~l~~~~~ 274 (463)
. +...+++|++|.+.++.... ..+.-.+|+|++|.+.+... .+ .+..+++|+.+.+..+..
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 1 11224455555553332110 01111245566666543210 00 123355666666643221
Q ss_pred CCCchhHHHHHHHHhhcCccceEEEEecccccc--ccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcce
Q 047476 275 PDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQV--IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQT 352 (463)
Q Consensus 275 ~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~ 352 (463)
. . .+..+..+...+++++.|.++...+.. ++... ....+|++|+|..+.- +..++..+...+|+|+.
T Consensus 449 ~-l---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 449 G-L---TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-----RGCPNLQKLEMRGCCF--SERAIAAAVTKLPSLRY 517 (592)
T ss_dssp G-C---CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH-----TCCTTCCEEEEESCCC--BHHHHHHHHHHCSSCCE
T ss_pred C-c---cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH-----hcCcccCeeeccCCCC--cHHHHHHHHHhcCccCe
Confidence 0 0 033344445556666666665433221 00000 0001577777766531 23456666677777777
Q ss_pred EEEEcCC
Q 047476 353 LTINIGP 359 (463)
Q Consensus 353 L~l~~~~ 359 (463)
|+|....
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 7776554
No 10
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.78 E-value=3.3e-09 Score=71.10 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=33.5
Q ss_pred CccccccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476 5 DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW 44 (463)
Q Consensus 5 ~~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw 44 (463)
...+.++.||+|++.+||++||.+|+++++.|||+|+.+.
T Consensus 4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3457789999999999999999999999999999999764
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.70 E-value=3.8e-08 Score=92.63 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=96.2
Q ss_pred CCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCC
Q 047476 143 LPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLR 221 (463)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~ 221 (463)
+| .+..+++|++|+|++|.+. .+.+..+++|+.|+|++..++.-. -+..++.|+.|++.++. +..+.--..+++
T Consensus 56 l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~ 130 (308)
T 1h6u_A 56 IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSN 130 (308)
T ss_dssp CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEECTTSC-CCCCGGGTTCTT
T ss_pred ch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEECCCCC-CCCchhhcCCCC
Confidence 44 4566788899999888765 223677888899988888764321 36678888888888876 333332344668
Q ss_pred ccEEEEecCCCCceeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476 222 LKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301 (463)
Q Consensus 222 L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~ 301 (463)
|+.|.+.+|........-..++|+.|.++++... .. . . +..+++++.|.++
T Consensus 131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--------------------~~----~----~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS--------------------DL----T----P-LANLSKLTTLKAD 181 (308)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--------------------CC----G----G-GTTCTTCCEEECC
T ss_pred CCEEECCCCccCcCccccCCCCccEEEccCCcCC--------------------CC----h----h-hcCCCCCCEEECC
Confidence 8888888776311000012344555544443211 00 0 0 4456666666666
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
+..+..++. + ....+|++|.+..+.-. .+.. +..+|+|+.|++...
T Consensus 182 ~n~l~~~~~----l--~~l~~L~~L~L~~N~l~----~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 182 DNKISDISP----L--ASLPNLIEVHLKNNQIS----DVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp SSCCCCCGG----G--GGCTTCCEEECTTSCCC----BCGG-GTTCTTCCEEEEEEE
T ss_pred CCccCcChh----h--cCCCCCCEEEccCCccC----cccc-ccCCCCCCEEEccCC
Confidence 554443321 0 01115666666543211 1111 567777777777654
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.69 E-value=7.4e-08 Score=96.22 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=56.9
Q ss_pred ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
+..+++|++|+|++|.+. .+.+..+++|++|++++..+..-. . +.+++.|+.|++.+|. +..+..-..+++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEE
Confidence 344556666666666543 122555666666666665543211 1 5566666666666654 2222222334566666
Q ss_pred EEecCCCCceeEEEECCCceEEEEecccce-eeeecCCCccEEEEe
Q 047476 226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGM-FRVERQNFLTEVELD 270 (463)
Q Consensus 226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~ 270 (463)
.+.+|.+......-..++|+.|.+.+.... ..+..+++|+.+.+.
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence 666554211000012345555555432211 123344455555544
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.68 E-value=4.7e-08 Score=92.85 Aligned_cols=189 Identities=16% Similarity=0.122 Sum_probs=127.4
Q ss_pred CceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEE
Q 047476 151 VGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVI 227 (463)
Q Consensus 151 ~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i 227 (463)
.++++|+|.++.+. ++.+..+++|++|+|++..++ .+...+.+++.|+.|++.++. +..+. .-..+++|+.|.+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 68999999999875 445677999999999998775 344456789999999999986 33332 2234679999999
Q ss_pred ecCCCCceeE------------EEECCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476 228 DKCDFNQYRY------------EIAAPNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL 292 (463)
Q Consensus 228 ~~c~~~~~~~------------~i~aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l 292 (463)
.+|.. ...+ .-..++|+.|.++++... ..+..+++|+.+.+....-.... .-+..+
T Consensus 158 ~~n~~-~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~--------~~l~~l 228 (328)
T 4fcg_A 158 RACPE-LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG--------PAIHHL 228 (328)
T ss_dssp EEETT-CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC--------GGGGGC
T ss_pred CCCCC-ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc--------hhhccC
Confidence 99863 1111 113889999999886432 23667888999998754322111 125678
Q ss_pred ccceEEEEecccc-ccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 293 EIVRVLTVCSFLL-QVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 293 ~~l~~L~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
++++.|.++++.+ ..++..- ....+|++|.+..+... ..+..-+..+|+|+.|+|....
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~-----~~l~~L~~L~L~~n~~~---~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIF-----GGRAPLKRLILKDCSNL---LTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCT-----TCCCCCCEEECTTCTTC---CBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCEEECcCCcchhhhHHHh-----cCCCCCCEEECCCCCch---hhcchhhhcCCCCCEEeCCCCC
Confidence 9999999987443 2222211 11127889988764321 1233346789999999996543
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.67 E-value=1.1e-07 Score=94.91 Aligned_cols=231 Identities=18% Similarity=0.109 Sum_probs=114.7
Q ss_pred ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
+..+++|++|+|++|.+. .+.+..+++|++|+++++.+..-. -+.+++.|+.|.+.+. ...+.--..+++|+.|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERL 182 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCCc--ccCchhhccCCCCCEE
Confidence 344555666666555443 122445566666666655543211 1455666666665432 1111112334567777
Q ss_pred EEecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecc
Q 047476 226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSF 303 (463)
Q Consensus 226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~ 303 (463)
.+.+|.+......-..++|++|.+.++... ..+..+++|+.+.+....-... ..+..+++++.|.+++.
T Consensus 183 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSS
T ss_pred ECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---------hhhhcCCCCCEEECCCC
Confidence 776665321111112466777766655322 1244566677766653321111 12456677777777665
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccccc
Q 047476 304 LLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIV 383 (463)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 383 (463)
.+..++. .....+|++|.+..+.-. .+.. +..+|+|+.|++...... . ...
T Consensus 254 ~l~~~~~------~~~l~~L~~L~l~~n~l~----~~~~-~~~l~~L~~L~L~~n~l~------------~------~~~ 304 (466)
T 1o6v_A 254 QISNLAP------LSGLTKLTELKLGANQIS----NISP-LAGLTALTNLELNENQLE------------D------ISP 304 (466)
T ss_dssp CCCCCGG------GTTCTTCSEEECCSSCCC----CCGG-GTTCTTCSEEECCSSCCS------------C------CGG
T ss_pred ccccchh------hhcCCCCCEEECCCCccC----cccc-ccCCCccCeEEcCCCccc------------C------chh
Confidence 4432221 111126777777543211 1111 567777887777543211 0 000
Q ss_pred cccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476 384 LYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS 428 (463)
Q Consensus 384 ~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~ 428 (463)
+ ....+|+.+.+.+-.-.... . +.+.+.|+++.+...
T Consensus 305 ~--~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 305 I--SNLKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN 341 (466)
T ss_dssp G--GGCTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred h--cCCCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence 1 12367888888765432211 1 467788888888644
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.66 E-value=2.4e-09 Score=106.75 Aligned_cols=39 Identities=18% Similarity=-0.019 Sum_probs=21.5
Q ss_pred cceeEEEEEeeecchhh-HHHHHHHHhccccccceeeecc
Q 047476 390 SSLRVVNVRGFKGTMTE-ARFLNYLIFFGNVLQELNLYLS 428 (463)
Q Consensus 390 ~~Lk~V~i~~f~g~~~e-~~l~~~ll~~a~~L~~m~i~~~ 428 (463)
.+|+.+.+.+-.-.... ..+.+.+-...+.|+++.+...
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 57777777655433322 2333433333667887777643
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.61 E-value=7.6e-07 Score=90.68 Aligned_cols=205 Identities=17% Similarity=0.106 Sum_probs=136.4
Q ss_pred CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---eccc
Q 047476 144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITV 217 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~ 217 (463)
|..+..+++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+ ..-.
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 120 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNP-YQTLGVTSLFP 120 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCC-CSSSCSSCSCT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCc-ccccchhhhhh
Confidence 456678899999999998764 456789999999999998765322 2346889999999999986 3322 2234
Q ss_pred CCCCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476 218 PNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELL 289 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll 289 (463)
.+++|+.|.+.+|.. ...+. -..++|++|.+.+.... ..+..+++|+.+.+...... .....+.
T Consensus 121 ~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-------~~~~~~~ 192 (549)
T 2z81_A 121 NLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-------FLLEIFA 192 (549)
T ss_dssp TCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-------THHHHHH
T ss_pred ccCCccEEECCCCcc-ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-------ccchhhH
Confidence 567999999999862 22221 12578999999876543 23556777888888744321 1122345
Q ss_pred hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC-CchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
..+++++.|.+++..+........+.. ....++++|.+....- ......+...++.+++|+.|++....
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hhcccccEEEccCCccccccccccchh-hhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 679999999998876654322111110 0112688888875432 22335667777888999999887653
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.58 E-value=9.1e-08 Score=91.51 Aligned_cols=250 Identities=15% Similarity=0.098 Sum_probs=163.2
Q ss_pred hCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHH
Q 047476 114 ARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIREL 192 (463)
Q Consensus 114 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l 192 (463)
-..++++++.-.. ...+| .+..+++|++|+|++|.+. .+.+..+++|++|+|+++.++.- . -
T Consensus 43 l~~L~~L~l~~~~-------------i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~ 105 (347)
T 4fmz_A 43 LESITKLVVAGEK-------------VASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-A 105 (347)
T ss_dssp HTTCSEEECCSSC-------------CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-G
T ss_pred cccccEEEEeCCc-------------cccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-H
Confidence 4688888885321 12344 3567889999999999775 23377899999999999877442 1 3
Q ss_pred HhcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeE--EEECCCceEEEEecccce--eeeecCCCccEEE
Q 047476 193 LVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRY--EIAAPNLRFWKYSGTEGM--FRVERQNFLTEVE 268 (463)
Q Consensus 193 ls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~--~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~ 268 (463)
+.+++.|+.|++.++. +..+.....+++|+.|.+.+|.. ...+ .-..++|++|.+.++... ..+..+++|+.+.
T Consensus 106 ~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS 183 (347)
T ss_dssp GTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTT-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred HcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCC-cccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence 7899999999999986 33333345577999999999863 1111 123688999998876432 2266788899998
Q ss_pred EeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCC
Q 047476 269 LDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP 348 (463)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P 348 (463)
+....-.... .+..+++++.|.+.+..+..++. .....+|++|.+..+.-. .+.. +..+|
T Consensus 184 l~~n~l~~~~---------~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~----~~~~-~~~l~ 243 (347)
T 4fmz_A 184 LNYNQIEDIS---------PLASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKIT----DLSP-LANLS 243 (347)
T ss_dssp CTTSCCCCCG---------GGGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCC----CCGG-GTTCT
T ss_pred ccCCcccccc---------cccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccC----CCcc-hhcCC
Confidence 8744322111 16678999999997765443321 111127899998764321 1222 78999
Q ss_pred CcceEEEEcCCCCCCCCCCCCCCCCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476 349 SLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS 428 (463)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~ 428 (463)
+|++|++....... . ..+ ....+|+.+.+.+-.-..- -.+.+.+.|+.+.+...
T Consensus 244 ~L~~L~l~~n~l~~---------~---------~~~--~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 244 QLTWLEIGTNQISD---------I---------NAV--KDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp TCCEEECCSSCCCC---------C---------GGG--TTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCC---------C---------hhH--hcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCC
Confidence 99999996542210 0 011 1236788888886543321 13567788999888754
No 18
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.57 E-value=6.6e-09 Score=103.58 Aligned_cols=258 Identities=17% Similarity=0.096 Sum_probs=127.6
Q ss_pred CceeEEEeeeeeeCCC-------CCCCCCccceEEeccEeechhHHHHHHh----cCCCceEEeecccCCCcee------
Q 047476 151 VGLESLELFSCNINAS-------RFNNFIALKELSLGWIQLSVQSIRELLV----QCPFLESLSLKKCWEIEYL------ 213 (463)
Q Consensus 151 ~~L~~L~L~~~~~~~~-------~~~~l~~L~~L~L~~~~~~~~~l~~lls----~cp~Le~L~l~~c~~~~~~------ 213 (463)
++|++|+|++|.+... .+..+++|++|+|++..+++.....+.. ..+.|+.|++.+|. ++..
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 220 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLC 220 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHH
Confidence 4688888877766532 1234677888888877776554444433 35578888888774 2221
Q ss_pred ecccCCCCccEEEEecCCCCcee-------EEEECCCceEEEEeccccee--------eeecCCCccEEEEeeecCCCCc
Q 047476 214 DITVPNLRLKRLVIDKCDFNQYR-------YEIAAPNLRFWKYSGTEGMF--------RVERQNFLTEVELDFALQPDFD 278 (463)
Q Consensus 214 ~i~~~~~~L~~L~i~~c~~~~~~-------~~i~aP~L~~l~~~g~~~~~--------~~~~~~~L~~l~l~~~~~~~~~ 278 (463)
..-..+++|++|.+++|.+.... +.-..++|++|.++++.... .+..+++|+.+.+.... ..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~ 297 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE---LG 297 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC---CH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC---Cc
Confidence 11123457888888777532110 00125677777777653221 13346777777775321 11
Q ss_pred hhHHHHHHHHh-hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCC-chhhHHHHhhhc-CCCcceEEE
Q 047476 279 EEIGEFLYELL-RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHP-HEYYGINFMLKS-CPSLQTLTI 355 (463)
Q Consensus 279 ~~~~~~~~~ll-~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~lL~~-~P~L~~L~l 355 (463)
......+...+ ...++++.|.++++.+.......-+.......+|++|++..+.-. .....+...++. +|+|++|++
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 10011222222 233578888887654432110000000000016777777654221 112334444443 678888887
Q ss_pred EcCCCCCCCCCCCCCCCCchhhhcc-ccccccccccceeEEEEEeeecch-hhHHHHHHHHhccccccceeeec
Q 047476 356 NIGPGRRFPNYRPPFELDPEKCWTK-NIVLYPCVTSSLRVVNVRGFKGTM-TEARFLNYLIFFGNVLQELNLYL 427 (463)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~c~~~~Lk~V~i~~f~g~~-~e~~l~~~ll~~a~~L~~m~i~~ 427 (463)
..... ... .... ...+.. ..+|+++.+.+-.-+. ....+++.+-++...|+++.+.-
T Consensus 378 ~~n~i------------~~~-~~~~l~~~l~~--~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 378 ADCDV------------SDS-SCSSLAATLLA--NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp TTSCC------------CHH-HHHHHHHHHHH--CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred CCCCC------------Chh-hHHHHHHHHHh--CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence 44321 110 0000 000111 2677888777654333 33344444444455677777653
No 19
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.54 E-value=1.9e-07 Score=92.94 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=80.0
Q ss_pred CCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEe
Q 047476 149 GHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVID 228 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~ 228 (463)
.+++|++|+|+++.+....+..+++|++|+|++..++.-. +..++.|+.|.+.++. +..+.+ ..+++|+.|.+.
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l~l-~~l~~L~~L~l~ 156 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEIDV-SHNTQLTELDCH 156 (457)
T ss_dssp TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCCCC-TTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-cceecc-ccCCcCCEEECC
Confidence 3445555555555443323444555555555554442211 3445555555555543 222222 223455555555
Q ss_pred cCCCCceeEEE-ECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccc
Q 047476 229 KCDFNQYRYEI-AAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQ 306 (463)
Q Consensus 229 ~c~~~~~~~~i-~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~ 306 (463)
+|.. ...+.+ ..++|+.|.+++.... +.+..+++|+.+.+....-... -+..+++++.|.+++..+.
T Consensus 157 ~n~~-~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 157 LNKK-ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL----------DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp TCSC-CCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC----------CCTTCTTCSEEECCSSCCS
T ss_pred CCCc-ccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee----------ccccCCCCCEEECcCCccc
Confidence 5531 122222 2355566655554321 2344555566655543211100 0345666666666655544
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 307 VIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 307 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
.++. ....+|+.|.+..+.-. .+ -+..+++|+.|++.
T Consensus 226 ~ip~-------~~l~~L~~L~l~~N~l~----~~--~~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 226 EIDV-------TPLTQLTYFDCSVNPLT----EL--DVSTLSKLTTLHCI 262 (457)
T ss_dssp CCCC-------TTCTTCSEEECCSSCCS----CC--CCTTCTTCCEEECT
T ss_pred ccCc-------cccCCCCEEEeeCCcCC----Cc--CHHHCCCCCEEecc
Confidence 3321 11125777776543211 11 14456666666543
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.54 E-value=2.7e-07 Score=89.83 Aligned_cols=193 Identities=15% Similarity=0.070 Sum_probs=92.7
Q ss_pred ccCCCceeEEEeeeeeeC--CC-CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCcc
Q 047476 147 VYGHVGLESLELFSCNIN--AS-RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLK 223 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~--~~-~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~ 223 (463)
+..+++|++|+|+++.+. ++ .+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+.+ ...++|+
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~L~ 189 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNR-LTHVDL-SLIPSLF 189 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSC-CSBCCG-GGCTTCS
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCc-CCcccc-ccccccc
Confidence 445667777777776554 12 2456777777777766543211 1224566777777777654 222222 1133555
Q ss_pred EEEEecCCCC-----------------ceeEEE-ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHH
Q 047476 224 RLVIDKCDFN-----------------QYRYEI-AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGE 283 (463)
Q Consensus 224 ~L~i~~c~~~-----------------~~~~~i-~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 283 (463)
.|.+.++... ...+.. ..++|+.|.+.+.... ..+..+++|+.+.+....-...
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~------ 263 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------ 263 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------
T ss_pred eeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc------
Confidence 5555444311 111111 1245555555544221 1234455666666553211100
Q ss_pred HHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 284 FLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 284 ~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
....+..+++++.|.+++..+..++.... ...+|++|.+..+.- ..+..-+..+|+|++|++...
T Consensus 264 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~l~~L~~L~L~~n~l----~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 264 -MYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTLKVLDLSHNHL----LHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp -ESGGGTTCSSCCEEECCSSCCCEEECSSS-----CCTTCCEEECCSSCC----CCCGGGHHHHTTCSEEECCSS
T ss_pred -ChhHccccccCCEEECCCCcCcccCcccC-----CCCCCCEEECCCCcc----eecCccccccCcCCEEECCCC
Confidence 01124456666777666655443332111 112677777765421 122223455678888877543
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.53 E-value=3.7e-08 Score=92.52 Aligned_cols=242 Identities=19% Similarity=0.158 Sum_probs=143.3
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC--C-CCCCCCCccceEEeccEeechh-HHHHHHhcCCCceEEeecccCCCceee-c
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN--A-SRFNNFIALKELSLGWIQLSVQ-SIRELLVQCPFLESLSLKKCWEIEYLD-I 215 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~--~-~~~~~l~~L~~L~L~~~~~~~~-~l~~lls~cp~Le~L~l~~c~~~~~~~-i 215 (463)
..+|..+. ++|++|+|+++.+. + ..+..+++|++|+|++..++.. .....+.+++.|+.|++.++. +..+. .
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~ 96 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN 96 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhh
Confidence 34565443 58999999998765 2 2367899999999998876421 112234578999999999886 33322 1
Q ss_pred ccCCCCccEEEEecCCCCc-e--eEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476 216 TVPNLRLKRLVIDKCDFNQ-Y--RYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYEL 288 (463)
Q Consensus 216 ~~~~~~L~~L~i~~c~~~~-~--~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 288 (463)
-..+++|+.|.+.++.... . ...-..++|++|.+++.... ..+..+++|+.+.+....-. +......
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~ 170 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------ENFLPDI 170 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG------GGEECSC
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc------cccchhH
Confidence 2346799999998875310 0 01123578999998876533 22556788888887632110 0001123
Q ss_pred hhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCC
Q 047476 289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRP 368 (463)
Q Consensus 289 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~ 368 (463)
+..+++++.|.+++..+..+... .+. ...+|++|.+..+.-.. . ....+..+|+|+.|++........
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~--~~~--~l~~L~~L~L~~N~l~~-~--~~~~~~~l~~L~~L~L~~N~l~~~----- 238 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPT--AFN--SLSSLQVLNMSHNNFFS-L--DTFPYKCLNSLQVLDYSLNHIMTS----- 238 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTT--TTT--TCTTCCEEECTTSCCSB-C--CSGGGTTCTTCCEEECTTSCCCBC-----
T ss_pred HhhCcCCCEEECCCCCcCCcCHH--Hhc--CCCCCCEEECCCCccCc-c--ChhhccCcccCCEeECCCCCCccc-----
Confidence 56788999999987665543211 111 11278888886543211 0 011257789999999864432110
Q ss_pred CCCCCchhhhccccccccccccceeEEEEEe--eecchhhHHHHHHHHh
Q 047476 369 PFELDPEKCWTKNIVLYPCVTSSLRVVNVRG--FKGTMTEARFLNYLIF 415 (463)
Q Consensus 369 ~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~--f~g~~~e~~l~~~ll~ 415 (463)
. ...+ .....+|+.+.+.| +.++.....|.+.+-+
T Consensus 239 ----~-------~~~~-~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~ 275 (306)
T 2z66_A 239 ----K-------KQEL-QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 275 (306)
T ss_dssp ----S-------SSSC-CCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred ----C-------HHHH-HhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence 0 0000 11124789998886 5566555666666543
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.51 E-value=2.3e-07 Score=95.03 Aligned_cols=238 Identities=15% Similarity=0.111 Sum_probs=113.8
Q ss_pred CCcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee----cccC
Q 047476 143 LPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD----ITVP 218 (463)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~----i~~~ 218 (463)
+|..+..+ +|++|++.+|.+..-....+++|+.|++.+..+....-. ..+|.|+.|++.++.- .... ....
T Consensus 297 l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l-~~~~~~~~~~~~ 371 (570)
T 2z63_A 297 VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGL-SFKGCCSQSDFG 371 (570)
T ss_dssp CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCC-BEEEEEEHHHHT
T ss_pred hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCcc-Cccccccccccc
Confidence 44444444 666666666655422223566666666665543211000 4566677777666642 2211 1123
Q ss_pred CCCccEEEEecCCCCc-eeEEEECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476 219 NLRLKRLVIDKCDFNQ-YRYEIAAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL 292 (463)
Q Consensus 219 ~~~L~~L~i~~c~~~~-~~~~i~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l 292 (463)
+++|+.|.+.+|.... ....-..++|++|.+.++... ..+..+++|+.+.+....-.. .....+..+
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l 444 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AFNGIFNGL 444 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-------CCTTTTTTC
T ss_pred cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-------cchhhhhcC
Confidence 4567777776665211 011123566777766654321 124455666666665321100 001224556
Q ss_pred ccceEEEEeccccc--cccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCC
Q 047476 293 EIVRVLTVCSFLLQ--VIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPF 370 (463)
Q Consensus 293 ~~l~~L~l~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~ 370 (463)
++++.|.+.+..+. .++..- . ...+|+.|++..+.-. ......+..+|+|+.|++........
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~---~--~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~------- 509 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIF---T--ELRNLTFLDLSQCQLE---QLSPTAFNSLSSLQVLNMASNQLKSV------- 509 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCC---T--TCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSCC-------
T ss_pred CcCcEEECcCCcCccccchhhh---h--cccCCCEEECCCCccc---cCChhhhhcccCCCEEeCCCCcCCCC-------
Confidence 77777777665443 122110 0 1115777776543211 01123456677788777754422110
Q ss_pred CCCchhhhccccccccccccceeEEEEEe--eecchhhHHHH-HHHHhccc
Q 047476 371 ELDPEKCWTKNIVLYPCVTSSLRVVNVRG--FKGTMTEARFL-NYLIFFGN 418 (463)
Q Consensus 371 ~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~--f~g~~~e~~l~-~~ll~~a~ 418 (463)
. ...+ ....+|+.+.+.+ +.+......++ ..+-.+..
T Consensus 510 --~-------~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~ 549 (570)
T 2z63_A 510 --P-------DGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 549 (570)
T ss_dssp --C-------TTTT--TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGG
T ss_pred --C-------HHHh--hcccCCcEEEecCCcccCCCcchHHHHHHHHhccc
Confidence 0 0000 1126788888876 45555566666 55544443
No 23
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.50 E-value=3.4e-08 Score=96.07 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=36.5
Q ss_pred CccCCCceeEEEeeeeeeC------CCC-------CCCCCccceEEeccEeechh---HHHHHHhcCCCceEEeecccC
Q 047476 146 HVYGHVGLESLELFSCNIN------ASR-------FNNFIALKELSLGWIQLSVQ---SIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~------~~~-------~~~l~~L~~L~L~~~~~~~~---~l~~lls~cp~Le~L~l~~c~ 208 (463)
.+..+++|++|+|++|.+. |.. +..+++|++|+|++..++.. .+...+..|+.|+.|+|.+|.
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 3445666777777665332 111 13566777777776666443 344455667777777777665
No 24
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.48 E-value=6.9e-08 Score=93.89 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=72.6
Q ss_pred ccCCCceeEEEeeeeeeCCC-------CCCCCCccceEEeccEeechh---HHHHHHhcC---------CCceEEeeccc
Q 047476 147 VYGHVGLESLELFSCNINAS-------RFNNFIALKELSLGWIQLSVQ---SIRELLVQC---------PFLESLSLKKC 207 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~~~-------~~~~l~~L~~L~L~~~~~~~~---~l~~lls~c---------p~Le~L~l~~c 207 (463)
+..+++|++|+|+++.+... .+..+++|++|+|+++.++.. .+...+..+ |.|+.|.+.+|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 35788999999999987653 234689999999999988643 455556666 99999999998
Q ss_pred CCCceeec------ccCCCCccEEEEecCCCCcee-------EEEECCCceEEEEeccc
Q 047476 208 WEIEYLDI------TVPNLRLKRLVIDKCDFNQYR-------YEIAAPNLRFWKYSGTE 253 (463)
Q Consensus 208 ~~~~~~~i------~~~~~~L~~L~i~~c~~~~~~-------~~i~aP~L~~l~~~g~~ 253 (463)
. ++...+ -..+++|+.|.+.+|.+.... ..-..|+|+.|.++++.
T Consensus 170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 6 321111 123569999999988742111 11134667777766553
No 25
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.46 E-value=3.2e-07 Score=91.22 Aligned_cols=187 Identities=18% Similarity=0.161 Sum_probs=87.5
Q ss_pred ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCC
Q 047476 147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLR 221 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~ 221 (463)
+..+++|++|+|+++.+. +..+..+++|++|+|++..++.- -...+.++|.|+.|++.+|..++.+.. -..+++
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 334555666666555443 22244556666666665543210 011234566666666666555544431 223456
Q ss_pred ccEEEEecCCCCceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceE
Q 047476 222 LKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRV 297 (463)
Q Consensus 222 L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~ 297 (463)
|+.|.+++|.+....-.-..++|+.|.++++... ..+..+++|+.+.+....-.... ...+..+++++.
T Consensus 198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~ 270 (452)
T 3zyi_A 198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-------RNAFDGLASLVE 270 (452)
T ss_dssp CCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-------TTTTTTCTTCCE
T ss_pred CCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-------HHHhcCCCCCCE
Confidence 6666666665321110112456666666665332 12445566666666422110000 012345667777
Q ss_pred EEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhh
Q 047476 298 LTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLK 345 (463)
Q Consensus 298 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~ 345 (463)
|.|+++.+..++... +.. ..+|+.|.|..+.- ..+..++...++
T Consensus 271 L~L~~N~l~~~~~~~--~~~--l~~L~~L~L~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDL--FTP--LRYLVELHLHHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp EECCSSCCSCCCTTS--STT--CTTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred EECCCCcCCccChHH--hcc--ccCCCEEEccCCCcCCCCCchHHHHHHH
Confidence 777665554333211 000 11567777665432 223344544444
No 26
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.45 E-value=1.4e-07 Score=79.82 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=71.9
Q ss_pred eeCCcCccCCCceeEEEeeeeeeCCC---CCCCCCccceEEeccEe-echhHHHHHHhc---CCCceEEeecccCCCcee
Q 047476 141 FDLPMHVYGHVGLESLELFSCNINAS---RFNNFIALKELSLGWIQ-LSVQSIRELLVQ---CPFLESLSLKKCWEIEYL 213 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~~~---~~~~l~~L~~L~L~~~~-~~~~~l~~lls~---cp~Le~L~l~~c~~~~~~ 213 (463)
..||..-...-.|++|+|++|.+... .+.+|++|++|+|++|. +++.++..+-.. ||.|+.|+|.+|..+++-
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 45675433445899999999987643 34589999999999996 899999998863 899999999999877753
Q ss_pred ec--ccCCCCccEEEEecCC
Q 047476 214 DI--TVPNLRLKRLVIDKCD 231 (463)
Q Consensus 214 ~i--~~~~~~L~~L~i~~c~ 231 (463)
.+ -..+++|++|.+.+|+
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 32 2357799999999987
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.45 E-value=4.5e-07 Score=90.04 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=29.8
Q ss_pred CcCccCCCceeEEEeeeeeeCC---C--CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeeccc
Q 047476 144 PMHVYGHVGLESLELFSCNINA---S--RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKC 207 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~~---~--~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c 207 (463)
|..+..+++|++|+|++|.+.. . .+..+++|++|+|++..++...-..++.+++.|+.|++.++
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 3334445555555555554431 1 14445555555555554432211222445555555555554
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.44 E-value=6e-07 Score=84.37 Aligned_cols=138 Identities=19% Similarity=0.133 Sum_probs=91.2
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHH
Q 047476 115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELL 193 (463)
Q Consensus 115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll 193 (463)
..++.|++.... ...+|. +..+++|++|+|+++.+. .+.+..+++|+.|+|++..++.- .. +
T Consensus 63 ~~L~~L~L~~n~-------------i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l 125 (308)
T 1h6u_A 63 NNLIGLELKDNQ-------------ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-L 125 (308)
T ss_dssp TTCCEEECCSSC-------------CCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-G
T ss_pred CCCCEEEccCCc-------------CCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-h
Confidence 577777774321 123444 667889999999999876 45677899999999999987442 12 7
Q ss_pred hcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEe
Q 047476 194 VQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELD 270 (463)
Q Consensus 194 s~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~ 270 (463)
.+++.|+.|.+.++. +..+..-..+++|+.|.+++|........-..++|+.|.++++... ..+..+++|+.+.+.
T Consensus 126 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK 203 (308)
T ss_dssp TTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred cCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence 899999999999986 3333323456799999999987421110113467777777665321 113445555555554
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.43 E-value=8.8e-07 Score=88.04 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=102.3
Q ss_pred ccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476 147 VYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV 226 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~ 226 (463)
+..+++|++|+|+++.+..-.+..+++|+.|++++..++.-. +.+++.|+.|++.++..++.+.+. .+++|+.|.
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~ 176 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLD 176 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCT-TCTTCCEEE
T ss_pred cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccc-cCCcCCEEE
Confidence 456788999999888776444778889999999888765422 678899999999988666665433 356899999
Q ss_pred EecCCCCceeEEE-ECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccc
Q 047476 227 IDKCDFNQYRYEI-AAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFL 304 (463)
Q Consensus 227 i~~c~~~~~~~~i-~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~ 304 (463)
+.++.+ ..+.+ ..++|+.|.+.+.... +.+..+++|+.+.+....-.. +. +..+++++.|.+++..
T Consensus 177 ls~n~l--~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~--------ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 177 CSFNKI--TELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE--------ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCSSCC--CCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC--------CC--CTTCTTCSEEECCSSC
T ss_pred CCCCcc--ceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc--------cC--ccccCCCCEEEeeCCc
Confidence 888864 22333 3678888888776432 457778888888876432211 11 4578888889888776
Q ss_pred ccccc
Q 047476 305 LQVIP 309 (463)
Q Consensus 305 ~~~~~ 309 (463)
+..++
T Consensus 245 l~~~~ 249 (457)
T 3bz5_A 245 LTELD 249 (457)
T ss_dssp CSCCC
T ss_pred CCCcC
Confidence 65443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.42 E-value=5e-07 Score=93.13 Aligned_cols=193 Identities=15% Similarity=0.077 Sum_probs=92.4
Q ss_pred ccCCCceeEEEeeeeeeC--CC-CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCcc
Q 047476 147 VYGHVGLESLELFSCNIN--AS-RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLK 223 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~--~~-~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~ 223 (463)
+..+++|++|+|++|.+. ++ .+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.+ ..+++|+
T Consensus 119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~l~~L~ 195 (597)
T 3oja_B 119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR-LTHVDL-SLIPSLF 195 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSC-CSBCCG-GGCTTCS
T ss_pred HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCC-CCCcCh-hhhhhhh
Confidence 345667777777777654 22 245677777777776654321 11224567777777777664 222221 1133455
Q ss_pred EEEEecCCCC-----------------ceeEEE-ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHH
Q 047476 224 RLVIDKCDFN-----------------QYRYEI-AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGE 283 (463)
Q Consensus 224 ~L~i~~c~~~-----------------~~~~~i-~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 283 (463)
.|.+.++.+. +..+.. ..++|+.|.+.++... ..+..+++|+.+.+....-...
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~------ 269 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------ 269 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------
T ss_pred hhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC------
Confidence 5554444311 111111 1234555555544221 2244556666666653221100
Q ss_pred HHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 284 FLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 284 ~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
....+..+++++.|.|+++.+..++..... ..+|+.|.|..+.-. .+..-+..+|+|+.|++...
T Consensus 270 -~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-----l~~L~~L~Ls~N~l~----~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 270 -MYHPFVKMQRLERLYISNNRLVALNLYGQP-----IPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp -ESGGGTTCSSCCEEECTTSCCCEEECSSSC-----CTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCSS
T ss_pred -CHHHhcCccCCCEEECCCCCCCCCCccccc-----CCCCcEEECCCCCCC----ccCcccccCCCCCEEECCCC
Confidence 011244567777777766555443322111 115777776543211 22222344566666666443
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.42 E-value=7.2e-08 Score=96.79 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=34.0
Q ss_pred ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
+..+++|++|+|++|.+. ...+..+++|++|+|++..++. +..+|.|+.|++.++. +..+.. ...++|+.|
T Consensus 54 ~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~-l~~~~~-~~l~~L~~L 125 (487)
T 3oja_A 54 LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN-ISRVSC-SRGQGKKNI 125 (487)
T ss_dssp GTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSC-CCCEEE-CCCSSCEEE
T ss_pred HhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCc-CCCCCc-cccCCCCEE
Confidence 334455555555555432 1124455555555555554422 1122555555555543 221111 123355555
Q ss_pred EEecCC
Q 047476 226 VIDKCD 231 (463)
Q Consensus 226 ~i~~c~ 231 (463)
.+.+|.
T Consensus 126 ~L~~N~ 131 (487)
T 3oja_A 126 YLANNK 131 (487)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 555544
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.41 E-value=7.9e-07 Score=88.33 Aligned_cols=216 Identities=18% Similarity=0.068 Sum_probs=141.4
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHH
Q 047476 115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRE 191 (463)
Q Consensus 115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ 191 (463)
.+++.|++..... ....|..+..+++|++|+|+++.+. +..+.++++|++|+|++..++.-. ..
T Consensus 75 ~~l~~L~L~~n~i------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMENNI------------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SG 141 (452)
T ss_dssp TTCSEEECCSSCC------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TT
T ss_pred CCccEEECcCCcC------------ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hh
Confidence 4677787743211 1123455667899999999998764 456788999999999998764211 22
Q ss_pred HHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCceeEEE----ECCCceEEEEecccce--eeeecCCC
Q 047476 192 LLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGM--FRVERQNF 263 (463)
Q Consensus 192 lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~--~~~~~~~~ 263 (463)
.+.+++.|+.|++.++. +..+. .-..+++|+.|.+.+|. ....+.. ..++|+.|.++++... -.+..+++
T Consensus 142 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~ 219 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219 (452)
T ss_dssp TSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTT
T ss_pred hhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccccccccccc
Confidence 35689999999999986 44432 23356799999999876 3444432 3588999999886433 23556778
Q ss_pred ccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHh
Q 047476 264 LTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFM 343 (463)
Q Consensus 264 L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 343 (463)
|+.+.+....-... ....+..+++++.|.+.+..+..+.... +. ...+|++|+|..+.-. . .....
T Consensus 220 L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~--~l~~L~~L~L~~N~l~-~--~~~~~ 285 (452)
T 3zyi_A 220 LEELEMSGNHFPEI-------RPGSFHGLSSLKKLWVMNSQVSLIERNA--FD--GLASLVELNLAHNNLS-S--LPHDL 285 (452)
T ss_dssp CCEEECTTSCCSEE-------CGGGGTTCTTCCEEECTTSCCCEECTTT--TT--TCTTCCEEECCSSCCS-C--CCTTS
T ss_pred ccEEECcCCcCccc-------CcccccCccCCCEEEeCCCcCceECHHH--hc--CCCCCCEEECCCCcCC-c--cChHH
Confidence 99888864321111 0123677899999999877665443211 11 1127899998754211 1 11234
Q ss_pred hhcCCCcceEEEEcCC
Q 047476 344 LKSCPSLQTLTINIGP 359 (463)
Q Consensus 344 L~~~P~L~~L~l~~~~ 359 (463)
+..+++|+.|+|...+
T Consensus 286 ~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNP 301 (452)
T ss_dssp STTCTTCCEEECCSSC
T ss_pred hccccCCCEEEccCCC
Confidence 6788999999997654
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.39 E-value=6.2e-08 Score=91.39 Aligned_cols=199 Identities=14% Similarity=0.018 Sum_probs=106.3
Q ss_pred eCCcCccCCCceeEEEeee-eeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee-ecc
Q 047476 142 DLPMHVYGHVGLESLELFS-CNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL-DIT 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~-~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~-~i~ 216 (463)
.+|..+..+++|++|+|++ +.+. +..+..+++|++|+|++..++. .+...+.+++.|+.|++.++.-.+.+ ..-
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 5666666777777777774 4332 3455677777777777765531 11223566777777777776422111 112
Q ss_pred cCCCCccEEEEecCCCCceeEE--E-ECC-CceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476 217 VPNLRLKRLVIDKCDFNQYRYE--I-AAP-NLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYEL 288 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~~~~~~~~--i-~aP-~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 288 (463)
..+++|+.|.+.++.+. ..+. + ..+ +|+.|.+++.... ..+..++ |+.+.+....-.. .....
T Consensus 146 ~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-------~~~~~ 216 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVL 216 (313)
T ss_dssp GGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGG
T ss_pred hcCCCCCeEECcCCccc-CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-------cCCHH
Confidence 23557777777776631 0110 1 122 6777777665322 1223333 6666654221000 01123
Q ss_pred hhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 289 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
+..+++++.|.+++..+...... . ....+|++|++..+.-. ..+...+..+|+|+.|++...
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~---~--~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGK---V--GLSKNLNGLDLRNNRIY---GTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGG---C--CCCTTCCEEECCSSCCE---ECCCGGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEECCCCceeeecCc---c--cccCCCCEEECcCCccc---CcCChHHhcCcCCCEEECcCC
Confidence 45678888888876655422111 0 11126888887654321 123344677888888888544
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.39 E-value=2.7e-07 Score=85.59 Aligned_cols=191 Identities=18% Similarity=0.100 Sum_probs=112.3
Q ss_pred CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEE
Q 047476 151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRL 225 (463)
Q Consensus 151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L 225 (463)
++|++|+|.++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++..+..+. .-..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 47888888877654 345677888888888876553211 1235678888888888876444432 22345688888
Q ss_pred EEecCCCCceeEE----EECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceE
Q 047476 226 VIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRV 297 (463)
Q Consensus 226 ~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~ 297 (463)
.+.++.+. .+. -..++|++|.+++.... + .+..+++|+.+.+....-.... ...+..+++++.
T Consensus 111 ~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~ 181 (285)
T 1ozn_A 111 HLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-------ERAFRGLHSLDR 181 (285)
T ss_dssp ECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-------TTTTTTCTTCCE
T ss_pred ECCCCcCC--EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-------HHHhcCccccCE
Confidence 88877631 111 12577888887765432 1 2456777887777633211000 012456788888
Q ss_pred EEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 298 LTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 298 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
|.+++..+..+... .+. ...+|++|.+..+.-.. .....+..+|+|+.|++...
T Consensus 182 L~l~~n~l~~~~~~--~~~--~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 182 LLLHQNRVAHVHPH--AFR--DLGRLMTLYLFANNLSA---LPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp EECCSSCCCEECTT--TTT--TCTTCCEEECCSSCCSC---CCHHHHTTCTTCCEEECCSS
T ss_pred EECCCCcccccCHh--Hcc--CcccccEeeCCCCcCCc---CCHHHcccCcccCEEeccCC
Confidence 88877655433110 011 11268888876542211 12245678889998888544
No 35
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.38 E-value=2.5e-07 Score=95.47 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=20.2
Q ss_pred cceeEEEEEe--eecchhhHHHHHHHHhccccc
Q 047476 390 SSLRVVNVRG--FKGTMTEARFLNYLIFFGNVL 420 (463)
Q Consensus 390 ~~Lk~V~i~~--f~g~~~e~~l~~~ll~~a~~L 420 (463)
.+|+.+.+.| +.++.....|+.++-++...+
T Consensus 547 ~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~ 579 (606)
T 3t6q_A 547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL 579 (606)
T ss_dssp HTSSEEECTTCCEECSGGGHHHHHHHHHCGGGE
T ss_pred CCCCEEeCCCCCccccCCcHHHHHHHHhCcccc
Confidence 5677777776 455666677777776654443
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.38 E-value=9e-07 Score=83.95 Aligned_cols=155 Identities=15% Similarity=0.061 Sum_probs=82.7
Q ss_pred CcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCc--e-eecccCCC
Q 047476 144 PMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIE--Y-LDITVPNL 220 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~--~-~~i~~~~~ 220 (463)
|..+..+++|++|+|+++.+..-....+++|++|++++..++.- ....+.+++.|+.|++.++.... . ...-..++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 44555667777777777765421112246777777777655321 12345678888888888765211 0 11122356
Q ss_pred CccEEEEecCCCCceeEEE-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccc
Q 047476 221 RLKRLVIDKCDFNQYRYEI-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIV 295 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l 295 (463)
+|+.|.+.++.+. .+.. ..++|++|.+++.... + .+..+++|+.+.+....-.... ...+..++++
T Consensus 172 ~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L 242 (330)
T 1xku_A 172 KLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-------NGSLANTPHL 242 (330)
T ss_dssp TCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-------TTTGGGSTTC
T ss_pred CcCEEECCCCccc--cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-------hhhccCCCCC
Confidence 7888888777632 1110 1267777777665332 1 2445566666666532211000 0123456666
Q ss_pred eEEEEeccccccc
Q 047476 296 RVLTVCSFLLQVI 308 (463)
Q Consensus 296 ~~L~l~~~~~~~~ 308 (463)
+.|.+++..+..+
T Consensus 243 ~~L~L~~N~l~~l 255 (330)
T 1xku_A 243 RELHLNNNKLVKV 255 (330)
T ss_dssp CEEECCSSCCSSC
T ss_pred CEEECCCCcCccC
Confidence 6666665554433
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.36 E-value=6.6e-08 Score=102.78 Aligned_cols=198 Identities=15% Similarity=0.105 Sum_probs=114.5
Q ss_pred CCc--CccCCCceeEEEeeeeeeC---CCCC-CCCCccceEEeccEeechhHHH--HHHhcCCCceEEeecccCCCceee
Q 047476 143 LPM--HVYGHVGLESLELFSCNIN---ASRF-NNFIALKELSLGWIQLSVQSIR--ELLVQCPFLESLSLKKCWEIEYLD 214 (463)
Q Consensus 143 lp~--~l~~~~~L~~L~L~~~~~~---~~~~-~~l~~L~~L~L~~~~~~~~~l~--~lls~cp~Le~L~l~~c~~~~~~~ 214 (463)
+|. .+.++++|++|+|++|.+. +..+ ..+++|++|+|++..++..... ..+.+|+.|+.|++.++.-.+...
T Consensus 116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 555 5667778888888877653 2222 5678888888887766432222 236778888888888775322222
Q ss_pred cccCCCCccEEEEecCCCCce-eEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476 215 ITVPNLRLKRLVIDKCDFNQY-RYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELL 289 (463)
Q Consensus 215 i~~~~~~L~~L~i~~c~~~~~-~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll 289 (463)
. ..+++|+.|.+.+|.+... ...-..++|++|.++++... ..+..+++|+.+.+....-..... .
T Consensus 196 ~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---------~ 265 (768)
T 3rgz_A 196 V-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---------P 265 (768)
T ss_dssp C-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCC---------C
T ss_pred c-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccC---------c
Confidence 2 4466888888887764211 11113577888877765432 235567777777776432110000 0
Q ss_pred hcCccceEEEEeccccc-cccCCCCCCCCCCC-CceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 290 RQLEIVRVLTVCSFLLQ-VIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 290 ~~l~~l~~L~l~~~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
..+++++.|.+.+..+. .++... ... .+|++|.+..+.-. ..+...+..+++|++|++...
T Consensus 266 ~~l~~L~~L~L~~n~l~~~ip~~~-----~~~~~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 266 LPLKSLQYLSLAENKFTGEIPDFL-----SGACDTLTGLDLSGNHFY---GAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp CCCTTCCEEECCSSEEEESCCCCS-----CTTCTTCSEEECCSSEEE---ECCCGGGGGCTTCCEEECCSS
T ss_pred cccCCCCEEECcCCccCCccCHHH-----HhhcCcCCEEECcCCcCC---CccchHHhcCCCccEEECCCC
Confidence 15677788877665544 222211 111 26888887653211 123445778899999998644
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.36 E-value=7.6e-07 Score=88.12 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=117.2
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCC
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNL 220 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~ 220 (463)
.+..+++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++..+..+.. -..++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 4556788999999888764 234678889999999887653211 12356789999999998876665542 23466
Q ss_pred CccEEEEecCCCCceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476 221 RLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR 296 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~ 296 (463)
+|+.|.+.+|.+..-.-....++|+.|.++++... ..+..+++|+.+.+....-.... ...+..+++++
T Consensus 186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~ 258 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-------RNAFDNLQSLV 258 (440)
T ss_dssp SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-------TTSSTTCTTCC
T ss_pred ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-------hhhhcCCCCCC
Confidence 89999998887421111123578888888876432 23556778888877633211100 12245678889
Q ss_pred EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhhc
Q 047476 297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLKS 346 (463)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~ 346 (463)
.|+|+++.+..++... +.. ..+|+.|.|..+.- ..+..++...++.
T Consensus 259 ~L~L~~N~l~~~~~~~--~~~--l~~L~~L~L~~Np~~CdC~l~~l~~~~~~ 306 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDL--FTP--LHHLERIHLHHNPWNCNCDILWLSWWIKD 306 (440)
T ss_dssp EEECTTSCCCCCCTTT--TSS--CTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred EEECCCCCCCccChhH--hcc--ccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence 9998877666443221 111 12688888876542 2344566655554
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.35 E-value=5.7e-07 Score=95.53 Aligned_cols=193 Identities=17% Similarity=0.104 Sum_probs=110.7
Q ss_pred cCCCceeEEEeeeeeeCC---CC---CCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476 148 YGHVGLESLELFSCNINA---SR---FNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL 220 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~~~~---~~---~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~ 220 (463)
..+++|++|+|+++.+.. .. +..+++|++|+|++..+.. ..+ ..|+.|+.|++.+|.-.+.+..-..++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 223 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGIPFLGDCS 223 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCCcccccCC
Confidence 466788888888876641 12 5678888888888877642 221 678888888888876433333334566
Q ss_pred CccEEEEecCCCCc--eeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476 221 RLKRLVIDKCDFNQ--YRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR 296 (463)
Q Consensus 221 ~L~~L~i~~c~~~~--~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~ 296 (463)
+|+.|.+.+|.+.. ....-..++|++|.++++... +....+++|+.+.+....-. +.....+...+++++
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~------~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT------GEIPDFLSGACDTLT 297 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE------ESCCCCSCTTCTTCS
T ss_pred CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC------CccCHHHHhhcCcCC
Confidence 88888888876421 111113678888888776432 22225677888877532110 000001122357888
Q ss_pred EEEEecccccc-ccCCCCCCCCCCCCceeEEEEecCCCCchhhHH-HHhhhcCCCcceEEEEcC
Q 047476 297 VLTVCSFLLQV-IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGI-NFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 297 ~L~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~lL~~~P~L~~L~l~~~ 358 (463)
.|.+++..+.. ++.. +. ...+|++|.+..+.-.. .+ ...+..+++|+.|++...
T Consensus 298 ~L~Ls~n~l~~~~p~~---~~--~l~~L~~L~L~~n~l~~---~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPF---FG--SCSLLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EEECCSSEEEECCCGG---GG--GCTTCCEEECCSSEEEE---ECCHHHHTTCTTCCEEECCSS
T ss_pred EEECcCCcCCCccchH---Hh--cCCCccEEECCCCcccC---cCCHHHHhcCCCCCEEeCcCC
Confidence 88887665442 2211 00 11167777775432110 11 123667888888888544
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.34 E-value=1.1e-06 Score=87.75 Aligned_cols=197 Identities=18% Similarity=0.156 Sum_probs=92.7
Q ss_pred CccCCCceeEEEeeeeee---CCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476 146 HVYGHVGLESLELFSCNI---NASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL 220 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~ 220 (463)
.+..+++|++|+|.++.+ .+..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++.. ..+. .-..++
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~ 200 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLY 200 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCC-CEECTTCSCSCT
T ss_pred HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcC-cEeChhhcccCc
Confidence 344555666666665543 2334556666666666665543211 23345666666666666542 2211 112344
Q ss_pred CccEEEEecCCCCceeEE---EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCc
Q 047476 221 RLKRLVIDKCDFNQYRYE---IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLE 293 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~---i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~ 293 (463)
+|+.|.+.+|.. ...+. ...++|++|.++++... ..+..+++|+.+.+....-.... ...+..++
T Consensus 201 ~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~ 272 (477)
T 2id5_A 201 RLKVLEISHWPY-LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-------GSMLHELL 272 (477)
T ss_dssp TCCEEEEECCTT-CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-------TTSCTTCT
T ss_pred ccceeeCCCCcc-ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-------hhhccccc
Confidence 666666666552 11111 11235666666654321 12345566666666532111000 01234556
Q ss_pred cceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 294 IVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 294 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
+++.|.+.+..+..+... .+. ...+|+.|+|..+.-. . .....+..+|+|++|++...+
T Consensus 273 ~L~~L~L~~n~l~~~~~~--~~~--~l~~L~~L~L~~N~l~-~--~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPY--AFR--GLNYLRVLNVSGNQLT-T--LEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TCCEEECCSSCCSEECTT--TBT--TCTTCCEEECCSSCCS-C--CCGGGBSCGGGCCEEECCSSC
T ss_pred cCCEEECCCCccceECHH--Hhc--CcccCCEEECCCCcCc-e--eCHhHcCCCcccCEEEccCCC
Confidence 666666655444332111 000 1115777776543211 0 112245667778877775443
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.34 E-value=7e-07 Score=92.69 Aligned_cols=204 Identities=5% Similarity=-0.022 Sum_probs=126.8
Q ss_pred CCcCcc--CCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHH------hcCCCceEEeecccCCC
Q 047476 143 LPMHVY--GHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELL------VQCPFLESLSLKKCWEI 210 (463)
Q Consensus 143 lp~~l~--~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll------s~cp~Le~L~l~~c~~~ 210 (463)
+|..+. ++++|++|+|++|.+. |..+..+++|++|+|++.. ++...+..-+ ..|+.|+.|++.++.-
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l- 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL- 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-
Confidence 888888 8999999999999753 5567889999999999997 7652333333 3569999999999863
Q ss_pred ceee---cccCCCCccEEEEecCCCCceeE-E-EECCCceEEEEecccce---eeeecCCC-ccEEEEeeecCCCCchhH
Q 047476 211 EYLD---ITVPNLRLKRLVIDKCDFNQYRY-E-IAAPNLRFWKYSGTEGM---FRVERQNF-LTEVELDFALQPDFDEEI 281 (463)
Q Consensus 211 ~~~~---i~~~~~~L~~L~i~~c~~~~~~~-~-i~aP~L~~l~~~g~~~~---~~~~~~~~-L~~l~l~~~~~~~~~~~~ 281 (463)
..+. .-..+++|+.|.+.++.+. ..+ . -..++|+.|.++++... ..+..+++ |+.+.+....-...
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~-g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l---- 392 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI---- 392 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCE-EECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC----
T ss_pred CccCchhhhccCCCCCEEeCcCCcCc-cchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc----
Confidence 3332 2345679999999998742 022 1 23578888888876433 13556777 88888864321110
Q ss_pred HHHHHHHhhc--CccceEEEEeccccccc-cCCCC--CCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 282 GEFLYELLRQ--LEIVRVLTVCSFLLQVI-PHAEE--PFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 282 ~~~~~~ll~~--l~~l~~L~l~~~~~~~~-~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
...+.. +++++.|.++...+... +..-. ....+...+|++|.+..+.-. . --..+++.+|+|+.|++.
T Consensus 393 ----p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~--lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 393 ----PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-K--FPKELFSTGSPLSSINLM 465 (636)
T ss_dssp ----CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-S--CCTHHHHTTCCCSEEECC
T ss_pred ----chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-c--CCHHHHccCCCCCEEECC
Confidence 011122 34788888876655422 11100 111112236788877654321 1 112345567888888876
Q ss_pred cCC
Q 047476 357 IGP 359 (463)
Q Consensus 357 ~~~ 359 (463)
...
T Consensus 466 ~N~ 468 (636)
T 4eco_A 466 GNM 468 (636)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 42
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.33 E-value=1.7e-07 Score=88.51 Aligned_cols=228 Identities=13% Similarity=0.074 Sum_probs=113.1
Q ss_pred CceeEEEeeeeeeCC---CCCCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476 151 VGLESLELFSCNINA---SRFNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV 226 (463)
Q Consensus 151 ~~L~~L~L~~~~~~~---~~~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~ 226 (463)
++|++|+|+++.+.. ..+..+++|++|+|++..++. .. +..++.|+.|++.++. +..+. ..++|+.|.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQELL---VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-ccccc---CCCCcCEEE
Confidence 355555555554431 123455555666555554321 11 4455666666665553 22222 113566666
Q ss_pred EecCCCCceeEEE-ECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476 227 IDKCDFNQYRYEI-AAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301 (463)
Q Consensus 227 i~~c~~~~~~~~i-~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~ 301 (463)
+.++.+ ..+.. ..++|++|.+++.... ..+..+++|+.+.+....-... ....+...+++++.|.++
T Consensus 106 l~~n~l--~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 106 AANNNI--SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------NFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCSSCC--SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCEEECT
T ss_pred CCCCcc--CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc------cHHHHhhccCcCCEEECC
Confidence 665542 22211 2455666666554321 2344566666666653221100 011234567888999988
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccc
Q 047476 302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKN 381 (463)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~ 381 (463)
+..+..++... ...+|++|.+..+.- ..+..-+..+|+|+.|++....-.. . +
T Consensus 178 ~N~l~~~~~~~------~l~~L~~L~Ls~N~l----~~l~~~~~~l~~L~~L~L~~N~l~~---------l--------~ 230 (317)
T 3o53_A 178 YNFIYDVKGQV------VFAKLKTLDLSSNKL----AFMGPEFQSAAGVTWISLRNNKLVL---------I--------E 230 (317)
T ss_dssp TSCCCEEECCC------CCTTCCEEECCSSCC----CEECGGGGGGTTCSEEECTTSCCCE---------E--------C
T ss_pred CCcCccccccc------ccccCCEEECCCCcC----CcchhhhcccCcccEEECcCCcccc---------h--------h
Confidence 77665443211 112788888865432 2222236678999999985442210 0 0
Q ss_pred cccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeee
Q 047476 382 IVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLY 426 (463)
Q Consensus 382 ~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~ 426 (463)
..+ ....+|+.+.+.+-.-... .+...+.+-+.|+.+.+.
T Consensus 231 ~~~--~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 231 KAL--RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTC--CCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred hHh--hcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 000 1236788887775433311 233344555666666554
No 43
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.32 E-value=1.3e-06 Score=76.20 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=58.2
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCc
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRL 222 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L 222 (463)
.+..+++|++|+|+++.+. +..+..+++|+.|+|++..+++... ..+..++.|+.|++.+|..++.+..-..+++|
T Consensus 83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L 161 (197)
T 4ezg_A 83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161 (197)
T ss_dssp GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSC
T ss_pred hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCC
Confidence 4556677888888877664 4566678888888888877655433 33567788888888887644544433445677
Q ss_pred cEEEEecCCC
Q 047476 223 KRLVIDKCDF 232 (463)
Q Consensus 223 ~~L~i~~c~~ 232 (463)
+.|.+.+|.+
T Consensus 162 ~~L~l~~n~i 171 (197)
T 4ezg_A 162 KSLNIQFDGV 171 (197)
T ss_dssp CEEECTTBCC
T ss_pred CEEECCCCCC
Confidence 7777777763
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.32 E-value=1.9e-06 Score=83.71 Aligned_cols=233 Identities=18% Similarity=0.120 Sum_probs=133.3
Q ss_pred CccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCc-CccCCCceeEEEeeeeeeC---
Q 047476 89 IVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPM-HVYGHVGLESLELFSCNIN--- 164 (463)
Q Consensus 89 ~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~--- 164 (463)
.++.+.+......... ...+.. -+.++.|++.-.. ...+|. .+..+++|++|+|+++.+.
T Consensus 46 ~l~~l~l~~~~l~~l~-~~~~~~--l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLP-AALLDS--FRQVELLNLNDLQ-------------IEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp CCSEEEEESCEESEEC-THHHHH--CCCCSEEECTTSC-------------CCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CceEEEecCCchhhCC-hhHhcc--cccCcEEECCCCc-------------ccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 5677776543222111 111111 3678888874211 123333 5567889999999999764
Q ss_pred CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCceeEEE-EC
Q 047476 165 ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQYRYEI-AA 241 (463)
Q Consensus 165 ~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~~~~i-~a 241 (463)
+..+..+++|++|+|++..++.- -..++.+++.|+.|++.++. +..+. .-..+++|+.|.+.++.+. .+.+ ..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l 185 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT--HVDLSLI 185 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS--BCCGGGC
T ss_pred HHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC--ccccccc
Confidence 34567899999999999876521 12335789999999999986 33322 1234679999999988742 2211 13
Q ss_pred CCceEEEEeccc-------------------ce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476 242 PNLRFWKYSGTE-------------------GM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301 (463)
Q Consensus 242 P~L~~l~~~g~~-------------------~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~ 301 (463)
|+|+.+.+.+.. .. +.....++|+.+.+....-... ..+..+++++.|+++
T Consensus 186 ~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---------AWLLNYPGLVEVDLS 256 (390)
T ss_dssp TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC---------GGGGGCTTCSEEECC
T ss_pred cccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc---------HHHcCCCCccEEECC
Confidence 555555544432 11 1112234566655553221110 235677888888887
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
+..+..+... .+ ....+|++|.+..+. +..+......+|+|+.|++...
T Consensus 257 ~n~l~~~~~~--~~--~~l~~L~~L~L~~n~----l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 257 YNELEKIMYH--PF--VKMQRLERLYISNNR----LVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp SSCCCEEESG--GG--TTCSSCCEEECCSSC----CCEEECSSSCCTTCCEEECCSS
T ss_pred CCcCCCcChh--Hc--cccccCCEEECCCCc----CcccCcccCCCCCCCEEECCCC
Confidence 7655433111 00 011268888876532 1222333467888888888654
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.31 E-value=2.9e-07 Score=95.07 Aligned_cols=199 Identities=19% Similarity=0.162 Sum_probs=103.5
Q ss_pred ccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCc
Q 047476 147 VYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRL 222 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L 222 (463)
+..+++|++|+|+++.+. |..+..+++|++|++++..+..-. ...+.++|.|+.|.+.++.....+. .-..+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 445677888888877664 345667788888888877654211 1235677888888888775332221 12345678
Q ss_pred cEEEEecCCCCceeEE------EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476 223 KRLVIDKCDFNQYRYE------IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL 292 (463)
Q Consensus 223 ~~L~i~~c~~~~~~~~------i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l 292 (463)
+.|.+.++.. ..+. -..|+|++|.++++... ..+..+++|+.+.+....-... .....+..+
T Consensus 353 ~~L~l~~n~l--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~l 424 (606)
T 3t6q_A 353 RELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK------DAQSPFQNL 424 (606)
T ss_dssp CEEECCSSCC--CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC------TTCCTTTTC
T ss_pred CEEECCCCcc--ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc------ccchhhhCc
Confidence 8888777763 2222 12467777777765432 1344566777776653211000 000123456
Q ss_pred ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
++++.|.+++..+...... .+. ...+|++|.+..+.-..........+..+++|+.|++...
T Consensus 425 ~~L~~L~l~~n~l~~~~~~--~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQ--LFD--GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TTCCEEECTTCCCBTTCTT--TTT--TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred ccCCEEECCCCccCCcCHH--HHh--CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 6777777765544322110 000 0115666666443211000011123555666666666443
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.31 E-value=4.2e-07 Score=89.95 Aligned_cols=196 Identities=18% Similarity=0.103 Sum_probs=95.7
Q ss_pred ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCC
Q 047476 147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLR 221 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~ 221 (463)
+..+++|++|+|+++.+. +..+.++++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+. .-..+++
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPS 161 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCc-ccccCHHHhhhCcc
Confidence 444556666666655442 234455666666666655442100 1123455666666666554 22221 1123446
Q ss_pred ccEEEEecCCCCceeEEE----ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccc
Q 047476 222 LKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIV 295 (463)
Q Consensus 222 L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l 295 (463)
|+.|.+.+|. ....+.. ..++|++|.++++... -.+..+++|+.+.+....-... ....+..++++
T Consensus 162 L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L 233 (440)
T 3zyj_A 162 LRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI-------RPGSFQGLMHL 233 (440)
T ss_dssp CCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-------CTTTTTTCTTC
T ss_pred cCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-------ChhhhccCccC
Confidence 6666666544 2222211 1456666666654322 1234455666666543211000 01224566777
Q ss_pred eEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 296 RVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
+.|.+.+..+..+.... +. ...+|++|+|..+.-. ......+..+++|+.|+|...+
T Consensus 234 ~~L~L~~n~l~~~~~~~--~~--~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNA--FD--NLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTCCCCEECTTS--ST--TCTTCCEEECTTSCCC---CCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCceeEEChhh--hc--CCCCCCEEECCCCCCC---ccChhHhccccCCCEEEcCCCC
Confidence 77777665554332211 01 1126888887654211 0112346678899999886654
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.31 E-value=9e-07 Score=88.52 Aligned_cols=197 Identities=16% Similarity=0.117 Sum_probs=89.1
Q ss_pred CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccC
Q 047476 144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVP 218 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~ 218 (463)
|..+..+++|++|+|+++.+. +..+..+++|++|+|++..+..- ....+.+++.|+.|++.++. +..+. .-..
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 150 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDND-LVYISHRAFSG 150 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTT-CCEECTTSSTT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCc-cceeChhhccC
Confidence 334445566666666665443 12344566666666665543211 01123556666666666554 22221 1123
Q ss_pred CCCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476 219 NLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR 290 (463)
Q Consensus 219 ~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~ 290 (463)
+++|+.|.+.+|.+ ..+. -..++|+.|.+.+.... ..+..+++|+.+.+........-. .-..
T Consensus 151 l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~ 221 (477)
T 2id5_A 151 LNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-------PNCL 221 (477)
T ss_dssp CTTCCEEEEESCCC--SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-------TTTT
T ss_pred CCCCCEEECCCCcC--cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-------cccc
Confidence 44666666666642 1111 12456666666554322 134455566666665321110000 0011
Q ss_pred cCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 291 QLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 291 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
...+++.|.+++..+..++... + ....+|+.|+|..+.-. . .....+..+++|+.|++...
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~~--~--~~l~~L~~L~Ls~n~l~-~--~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYLA--V--RHLVYLRFLNLSYNPIS-T--IEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHHH--H--TTCTTCCEEECCSSCCC-E--ECTTSCTTCTTCCEEECCSS
T ss_pred cCccccEEECcCCcccccCHHH--h--cCccccCeeECCCCcCC-c--cChhhccccccCCEEECCCC
Confidence 1235666666655444332100 0 00115667766543211 0 11123566777777777544
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.30 E-value=2e-06 Score=82.39 Aligned_cols=125 Identities=18% Similarity=0.093 Sum_probs=71.0
Q ss_pred cCccCCCceeEEEeeeeeeCC--C-CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCC
Q 047476 145 MHVYGHVGLESLELFSCNINA--S-RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPN 219 (463)
Q Consensus 145 ~~l~~~~~L~~L~L~~~~~~~--~-~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~ 219 (463)
..+..+++|++|+|+++.+.. + .+..+++|++|+|++..++.-.....+.+++.|+.|++.++..++.+. .-..+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 345567788888888776642 1 255678888888887765421111245677888888888775444432 12335
Q ss_pred CCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEee
Q 047476 220 LRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDF 271 (463)
Q Consensus 220 ~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~ 271 (463)
++|+.|.+.++.. ..+. -..++|++|.+++.... ..+..+++|+.+.+..
T Consensus 174 ~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 174 TFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp CEEEEEEEEETTC--CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred CCCCEEECCCCCc--CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 5777888777753 1110 01356666666554321 1122355566666553
No 49
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.29 E-value=4.1e-07 Score=79.41 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=69.2
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHH
Q 047476 115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELL 193 (463)
Q Consensus 115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll 193 (463)
..++.+++.-.. ...+| .+..+++|++|.+++|.+. .+.+..+++|++|++++..++..... .+
T Consensus 44 ~~L~~L~l~~n~-------------i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l 108 (197)
T 4ezg_A 44 NSLTYITLANIN-------------VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NL 108 (197)
T ss_dssp HTCCEEEEESSC-------------CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CC
T ss_pred CCccEEeccCCC-------------ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hh
Confidence 467777775321 12455 4667789999999988765 34667789999999998776543322 25
Q ss_pred hcCCCceEEeecccCCCc-eeecccCCCCccEEEEecCC
Q 047476 194 VQCPFLESLSLKKCWEIE-YLDITVPNLRLKRLVIDKCD 231 (463)
Q Consensus 194 s~cp~Le~L~l~~c~~~~-~~~i~~~~~~L~~L~i~~c~ 231 (463)
.++|.|+.|++.++.-.. ....-..+++|+.|.+++|.
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 678999999999886322 12222346688888888886
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.29 E-value=8.1e-07 Score=81.94 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=118.3
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--c
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--I 215 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i 215 (463)
..+|..+. ++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+. .
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 95 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGA 95 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccChhh
Confidence 34565443 47888888887654 336677888888888887653211 1234678888888888876 33332 2
Q ss_pred ccCCCCccEEEEecCCCC-ceeEEE-ECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476 216 TVPNLRLKRLVIDKCDFN-QYRYEI-AAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYEL 288 (463)
Q Consensus 216 ~~~~~~L~~L~i~~c~~~-~~~~~i-~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 288 (463)
-..+++|+.|.+.++... .....+ ..++|++|.+++.... ..+..+++|+.+.+....-.... ...+ .-
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~-~~ 171 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY---CTDL-RV 171 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC---GGGG-HH
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC---HHHh-hh
Confidence 234568888888877641 111112 3578888888775432 23566788888887643211110 0011 11
Q ss_pred hhcCccce-EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 289 LRQLEIVR-VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 289 l~~l~~l~-~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
+..++.+. .|.+++..+..++.. .+...+|++|.+..+.-. . .....+..+|+|+.|++...+
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~-----~~~~~~L~~L~L~~n~l~-~--~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLKELALDTNQLK-S--VPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTT-----SSCSCCEEEEECCSSCCS-C--CCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccccCcc-----ccCCCcccEEECCCCcee-e--cCHhHhcccccccEEEccCCc
Confidence 33344443 677776655544322 122237899988754321 1 112456789999999986543
No 51
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.28 E-value=9e-07 Score=82.40 Aligned_cols=81 Identities=20% Similarity=0.103 Sum_probs=46.9
Q ss_pred ccCCCceeEEEeeeeeeCC-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 147 VYGHVGLESLELFSCNINA-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
+..+++|++|+|+++.+.. +.+..+++|+.|+|++..++. +.. +..++.|+.|++.++. +..+..-..+++|+.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEE
Confidence 4456677777777766542 225567777777777665533 111 5667777777777664 3333222334566666
Q ss_pred EEecCC
Q 047476 226 VIDKCD 231 (463)
Q Consensus 226 ~i~~c~ 231 (463)
.+++|.
T Consensus 140 ~l~~n~ 145 (291)
T 1h6t_A 140 YLGNNK 145 (291)
T ss_dssp ECCSSC
T ss_pred EccCCc
Confidence 666665
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=7.3e-07 Score=95.10 Aligned_cols=202 Identities=8% Similarity=-0.009 Sum_probs=126.4
Q ss_pred CCcCcc--CCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-ech----hHHHHHH---hcCCCceEEeecccCC
Q 047476 143 LPMHVY--GHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSV----QSIRELL---VQCPFLESLSLKKCWE 209 (463)
Q Consensus 143 lp~~l~--~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~----~~l~~ll---s~cp~Le~L~l~~c~~ 209 (463)
+|..+. ++++|++|+|++|.+. |..+..+++|+.|+|++.. ++. ..+..+- ..+|.|+.|.+.++.-
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888877 8999999999998653 4567789999999999987 655 2333332 4677999999999873
Q ss_pred Cceeec---ccCCCCccEEEEecCCCCceeE-EE-ECCCceEEEEecccce---eeeecCCC-ccEEEEeeecCCCCchh
Q 047476 210 IEYLDI---TVPNLRLKRLVIDKCDFNQYRY-EI-AAPNLRFWKYSGTEGM---FRVERQNF-LTEVELDFALQPDFDEE 280 (463)
Q Consensus 210 ~~~~~i---~~~~~~L~~L~i~~c~~~~~~~-~i-~aP~L~~l~~~g~~~~---~~~~~~~~-L~~l~l~~~~~~~~~~~ 280 (463)
. .+.- -..+++|+.|.++++.+. .+ .+ ..++|+.|.++++... ..+..+++ |+.+.+....-...
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l--- 634 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI--- 634 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC---
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC---
Confidence 3 3322 345679999999998743 22 22 3578899998876433 12556777 88888874321110
Q ss_pred HHHHHHHHhhcC--ccceEEEEeccccccc-cCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476 281 IGEFLYELLRQL--EIVRVLTVCSFLLQVI-PHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI 357 (463)
Q Consensus 281 ~~~~~~~ll~~l--~~l~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~ 357 (463)
...+..+ ++++.|.++.+.+... +........+...+|+.|.+..+.-. . --..++..+|+|+.|++..
T Consensus 635 -----p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~--lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 635 -----PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-K--FPTELFATGSPISTIILSN 706 (876)
T ss_dssp -----CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-S--CCHHHHHTTCCCSEEECCS
T ss_pred -----chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-c--cCHHHHccCCCCCEEECCC
Confidence 0112223 3488888876655322 11111111222236788887654321 1 1123455778888888865
Q ss_pred C
Q 047476 358 G 358 (463)
Q Consensus 358 ~ 358 (463)
.
T Consensus 707 N 707 (876)
T 4ecn_A 707 N 707 (876)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.27 E-value=6.3e-07 Score=92.05 Aligned_cols=82 Identities=21% Similarity=0.084 Sum_probs=50.1
Q ss_pred CccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccE
Q 047476 146 HVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKR 224 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~ 224 (463)
.+..+++|+.|+|++|.+. .+.+..+++|+.|+|++..+..-. -+..++.|+.|+|.+|. +..+.-...+++|+.
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 135 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES 135 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence 3556677777777777654 223566777777777776653311 25567777777777765 333332333557777
Q ss_pred EEEecCC
Q 047476 225 LVIDKCD 231 (463)
Q Consensus 225 L~i~~c~ 231 (463)
|.+++|.
T Consensus 136 L~Ls~N~ 142 (605)
T 1m9s_A 136 LYLGNNK 142 (605)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 7777665
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.27 E-value=7.2e-07 Score=91.81 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=34.6
Q ss_pred hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
..+++++.|.++++.+..++. ...+|++|.|..+. +..+..-+..+|+|+.|+|....
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~----L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQ----LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSC----CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCC----CCcCCHHHhhccccCEEEecCCC
Confidence 345566666666554443332 11268888876542 22344457788999999986654
No 55
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.25 E-value=2.9e-07 Score=88.65 Aligned_cols=204 Identities=18% Similarity=0.175 Sum_probs=100.1
Q ss_pred ceeEEEeeeeeeCCC-------CCCCCC-ccceEEeccEeech---hHHHHHHhcC-CCceEEeecccCCCceeec----
Q 047476 152 GLESLELFSCNINAS-------RFNNFI-ALKELSLGWIQLSV---QSIRELLVQC-PFLESLSLKKCWEIEYLDI---- 215 (463)
Q Consensus 152 ~L~~L~L~~~~~~~~-------~~~~l~-~L~~L~L~~~~~~~---~~l~~lls~c-p~Le~L~l~~c~~~~~~~i---- 215 (463)
+|++|+|++|.+... .+..++ +|++|+|+++.+++ ..+..++..+ +.|+.|++.+|. ++....
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 101 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELV 101 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHH
Confidence 466666666655321 123455 56666666665532 2344444443 666666666654 221110
Q ss_pred --ccCC-CCccEEEEecCCCCceeE-E----EE--CCCceEEEEecccce----e----eeecCC-CccEEEEeeecCCC
Q 047476 216 --TVPN-LRLKRLVIDKCDFNQYRY-E----IA--APNLRFWKYSGTEGM----F----RVERQN-FLTEVELDFALQPD 276 (463)
Q Consensus 216 --~~~~-~~L~~L~i~~c~~~~~~~-~----i~--aP~L~~l~~~g~~~~----~----~~~~~~-~L~~l~l~~~~~~~ 276 (463)
-... ++|+.|.+++|.+..... . +. ..+|++|.++++... . .+...+ +|+.+.+....-
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-- 179 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-- 179 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG--
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC--
Confidence 0111 366666666655311100 0 00 136666666554321 0 112233 566666653211
Q ss_pred CchhHHHHHHHHhhcC-ccceEEEEeccccccccCCCCCCCCCC-CCceeEEEEecCCC-CchhhHHHHhhhcCCCcceE
Q 047476 277 FDEEIGEFLYELLRQL-EIVRVLTVCSFLLQVIPHAEEPFGMTV-PLEVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTL 353 (463)
Q Consensus 277 ~~~~~~~~~~~ll~~l-~~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L 353 (463)
.......+...+..+ ++++.|+|++..+.......-+..... ..+|++|+|..+.- ......+..+++.+++|+.|
T Consensus 180 -~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 180 -ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp -GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred -chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 111134455666677 488888887665443110000000000 11688888876542 23345677778888999999
Q ss_pred EEEcCC
Q 047476 354 TINIGP 359 (463)
Q Consensus 354 ~l~~~~ 359 (463)
++....
T Consensus 259 ~L~~n~ 264 (362)
T 3goz_A 259 YLDYDI 264 (362)
T ss_dssp EEEHHH
T ss_pred EeccCC
Confidence 987663
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.24 E-value=7.2e-07 Score=91.80 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=28.7
Q ss_pred cCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 291 QLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 291 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
.+++++.|.+.++.+..++... .+|+.|.+..+. +..+. ..+++|+.|++...
T Consensus 199 ~~~~L~~L~L~~N~l~~l~~~~--------~~L~~L~Ls~N~----L~~lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTSLPALP--------SGLKELIVSGNR----LTSLP---VLPSELKELMVSGN 251 (622)
T ss_dssp CCTTCCEEECCSSCCSSCCCCC--------TTCCEEECCSSC----CSCCC---CCCTTCCEEECCSS
T ss_pred ccchhhEEECcCCcccccCCCC--------CCCCEEEccCCc----cCcCC---CCCCcCcEEECCCC
Confidence 3456666666555444333211 267788776532 11211 45678888887654
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.21 E-value=2.3e-06 Score=88.19 Aligned_cols=211 Identities=18% Similarity=0.147 Sum_probs=127.5
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCccceeCC-cCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHH
Q 047476 115 RDVKELALDFHDPLWPEHGSENHEAVFDLP-MHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIR 190 (463)
Q Consensus 115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~ 190 (463)
..++.|++.-.. ...+| ..+..+++|++|+|++|.+. +..+..+++|++|+|++..++. --.
T Consensus 75 ~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~ 140 (597)
T 3oja_B 75 RQVELLNLNDLQ-------------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPR 140 (597)
T ss_dssp CCCSEEECTTSC-------------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred CCCcEEECCCCC-------------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCH
Confidence 578888774221 12333 35667889999999999764 3356789999999999987652 112
Q ss_pred HHHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCceeEEE-ECCCceEEEEecccc-------------
Q 047476 191 ELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQYRYEI-AAPNLRFWKYSGTEG------------- 254 (463)
Q Consensus 191 ~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~~~~i-~aP~L~~l~~~g~~~------------- 254 (463)
.++.+++.|+.|++.++. +..+. .-..+++|+.|.+.++.+. .+.+ ..|+|+.+.+++...
T Consensus 141 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ 217 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT--HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217 (597)
T ss_dssp TTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS--BCCGGGCTTCSEEECCSSCCSEEECCTTCSEEE
T ss_pred HHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC--CcChhhhhhhhhhhcccCccccccCCchhheee
Confidence 345789999999999986 33322 2244679999999988742 2221 135555555544321
Q ss_pred ------e-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEE
Q 047476 255 ------M-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLT 327 (463)
Q Consensus 255 ------~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 327 (463)
. +.....++|+.+.+....-.. ...+..+++++.|.+++..+..+... .+ ....+|+.|.
T Consensus 218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---------~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~--~~l~~L~~L~ 284 (597)
T 3oja_B 218 ASHNSINVVRGPVNVELTILKLQHNNLTD---------TAWLLNYPGLVEVDLSYNELEKIMYH--PF--VKMQRLERLY 284 (597)
T ss_dssp CCSSCCCEEECSCCSCCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCEEESG--GG--TTCSSCCEEE
T ss_pred ccCCcccccccccCCCCCEEECCCCCCCC---------ChhhccCCCCCEEECCCCccCCCCHH--Hh--cCccCCCEEE
Confidence 1 111122345555554322111 02366788899999887665533211 01 1112688888
Q ss_pred EecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 328 LNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 328 l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
|..+. +..+......+|+|+.|++....
T Consensus 285 Ls~N~----l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 285 ISNNR----LVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CTTSC----CCEEECSSSCCTTCCEEECCSSC
T ss_pred CCCCC----CCCCCcccccCCCCcEEECCCCC
Confidence 86532 22333445678999999997654
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.21 E-value=2.7e-06 Score=80.64 Aligned_cols=200 Identities=14% Similarity=0.069 Sum_probs=129.9
Q ss_pred eCCcCccCCCceeEEEeeeeeeCC---CCCCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccCCCceeeccc
Q 047476 142 DLPMHVYGHVGLESLELFSCNINA---SRFNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCWEIEYLDITV 217 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~~---~~~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~ 217 (463)
.+|..++ ++|++|++.++.+.. ..+..+++|++|++++..++. +.....+.+++.|+.|.+.++. +..+....
T Consensus 114 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~ 190 (330)
T 1xku_A 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL 190 (330)
T ss_dssp BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC
T ss_pred ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc
Confidence 4565544 689999999987652 235689999999999987753 2334557889999999999886 33332211
Q ss_pred CCCCccEEEEecCCCCceeEE---E-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476 218 PNLRLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELL 289 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll 289 (463)
.++|+.|.+.++.+ ..+. + ..++|++|.+++.... + .+..+++|+.+.+....-... ..-+
T Consensus 191 -~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l--------p~~l 259 (330)
T 1xku_A 191 -PPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV--------PGGL 259 (330)
T ss_dssp -CTTCSEEECTTSCC--CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC--------CTTT
T ss_pred -cccCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC--------Chhh
Confidence 25999999999873 2221 1 3589999999887543 2 356788999998875432111 1125
Q ss_pred hcCccceEEEEeccccccccCCCC--CCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 290 RQLEIVRVLTVCSFLLQVIPHAEE--PFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 290 ~~l~~l~~L~l~~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
..+++++.|.+++..+..++.... .........++.|.+....... +.....-++++++++.+++.
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~-~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY-WEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG-GGSCGGGGTTCCCGGGEEC-
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc-cccCccccccccceeEEEec
Confidence 678999999998877765543321 1111112367778776543211 11223457778888888774
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.21 E-value=2.4e-07 Score=95.63 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=16.4
Q ss_pred cceeEEEEEe--eecchhhHHHHHHHHhc
Q 047476 390 SSLRVVNVRG--FKGTMTEARFLNYLIFF 416 (463)
Q Consensus 390 ~~Lk~V~i~~--f~g~~~e~~l~~~ll~~ 416 (463)
.+|+.+.+.| +.++.....|+.++-++
T Consensus 545 ~~L~~l~l~~N~~~c~c~~~~~~~~l~~~ 573 (606)
T 3vq2_A 545 KSLAFFNLTNNSVACICEHQKFLQWVKEQ 573 (606)
T ss_dssp TTCCEEECCSCCCCCSSTTHHHHTTTTTS
T ss_pred ccCcEEEccCCCcccCCccHHHHHHHHcC
Confidence 3689998887 34444555566654333
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.20 E-value=1.8e-07 Score=88.17 Aligned_cols=189 Identities=15% Similarity=0.060 Sum_probs=101.6
Q ss_pred CCCceeEEEeeeeeeC---CCCC--CCCCccceEEeccEeechh--HHHHHHh-cCCCceEEeecccCCCceee--cccC
Q 047476 149 GHVGLESLELFSCNIN---ASRF--NNFIALKELSLGWIQLSVQ--SIRELLV-QCPFLESLSLKKCWEIEYLD--ITVP 218 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~---~~~~--~~l~~L~~L~L~~~~~~~~--~l~~lls-~cp~Le~L~l~~c~~~~~~~--i~~~ 218 (463)
.+++|++|+|+++.+. +..+ ..+++|++|+|++..++.. .+..+.. .++.|+.|++.++.- ..+. .-..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhcc
Confidence 5678999999998764 3333 6789999999998877442 3333322 248999999998863 3222 2234
Q ss_pred CCCccEEEEecCCCCce-----eEE-EECCCceEEEEecccce-------eeeecCCCccEEEEeeecCCCCchhHHHHH
Q 047476 219 NLRLKRLVIDKCDFNQY-----RYE-IAAPNLRFWKYSGTEGM-------FRVERQNFLTEVELDFALQPDFDEEIGEFL 285 (463)
Q Consensus 219 ~~~L~~L~i~~c~~~~~-----~~~-i~aP~L~~l~~~g~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 285 (463)
+++|+.|.++++.+... .+. -..++|++|.++++... ..+..+++|+.+.+....-.... .
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~ 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA------G 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC------C
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc------c
Confidence 66888888888763100 110 23467777777665322 01123455666655422110000 0
Q ss_pred HHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 286 YELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 286 ~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
......+++++.|.+++..+..++.... .+|++|++..+.- ..+.. +..+|+|+.|++.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-------~~L~~L~Ls~N~l----~~~p~-~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQVPKGLP-------AKLSVLDLSYNRL----DRNPS-PDELPQVGNLSLK 304 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSSCCSSCC-------SEEEEEECCSSCC----CSCCC-TTTSCEEEEEECT
T ss_pred hhhhhhcCCCCEEECCCCccChhhhhcc-------CCceEEECCCCCC----CCChh-HhhCCCCCEEecc
Confidence 0012234566666666555443332110 2566666654321 11122 4556666666663
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.19 E-value=2.1e-06 Score=78.94 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=65.4
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--IT 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~ 216 (463)
.+|..+. ++|++|+|+++.+. +..+..+++|++|+|++..++.- -..++.+++.|+.|++.++. +..+. .-
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 105 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK-LQALPIGVF 105 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc-CCcCCHhHc
Confidence 3554443 57899999888764 23567889999999988765421 12234678899999998875 33332 22
Q ss_pred cCCCCccEEEEecCCCCceeEE----EECCCceEEEEecc
Q 047476 217 VPNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGT 252 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~ 252 (463)
..+++|+.|.+.++.+ ..+. -..++|++|.+++.
T Consensus 106 ~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp TTCSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCCCEEECCCCcc--CeeCHHHhCcCcCCCEEECCCC
Confidence 3456888888887753 1111 12355666665554
No 62
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.19 E-value=2.9e-07 Score=86.74 Aligned_cols=237 Identities=11% Similarity=-0.019 Sum_probs=141.9
Q ss_pred CccEEEEEEeCCcch-hHHHHHHHHHhCCCeEEEEee-cCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC--
Q 047476 89 IVKAFRLVFSRPVNF-LVQNCISFAIARDVKELALDF-HDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-- 164 (463)
Q Consensus 89 ~l~~l~l~~~~~~~~-~i~~wl~~~~~~~v~~L~l~~-~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-- 164 (463)
.|+.+.+......+. .+...+. --..++.|++.- .. ....+|..+..+++|++|+|+++.+.
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINN------------LVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETT------------EESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred eEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCc------------ccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 577777775543320 1111111 125788888862 21 12256777888999999999998764
Q ss_pred -CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCC-CccEEEEecCCCCc-eeEEEE
Q 047476 165 -ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNL-RLKRLVIDKCDFNQ-YRYEIA 240 (463)
Q Consensus 165 -~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~-~L~~L~i~~c~~~~-~~~~i~ 240 (463)
+..+..+++|++|+|++..++. .+...+.+++.|+.|++.++.-.+.+. .-..++ +|+.|.+.++.+.. ..-.+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 4457789999999999987652 122345789999999999986332322 112233 89999999886310 000112
Q ss_pred CCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccc-cccCCCCCC
Q 047476 241 APNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQ-VIPHAEEPF 315 (463)
Q Consensus 241 aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~-~~~~~~~~~ 315 (463)
..+|+.|.+++.... ..+..+++|+.+.+....-.... ..+..+++++.|.+++..+. .++..-.
T Consensus 196 ~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-- 265 (313)
T 1ogq_A 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------GKVGLSKNLNGLDLRNNRIYGTLPQGLT-- 265 (313)
T ss_dssp GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--------GGCCCCTTCCEEECCSSCCEECCCGGGG--
T ss_pred CCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec--------CcccccCCCCEEECcCCcccCcCChHHh--
Confidence 224899988876432 24567888999888643211000 01456899999999876654 2322111
Q ss_pred CCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476 316 GMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI 357 (463)
Q Consensus 316 ~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~ 357 (463)
...+|++|++..+.-.. .+.. ....|+|+.|++..
T Consensus 266 ---~l~~L~~L~Ls~N~l~~---~ip~-~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 266 ---QLKFLHSLNVSFNNLCG---EIPQ-GGNLQRFDVSAYAN 300 (313)
T ss_dssp ---GCTTCCEEECCSSEEEE---ECCC-STTGGGSCGGGTCS
T ss_pred ---cCcCCCEEECcCCcccc---cCCC-CccccccChHHhcC
Confidence 11268888886542111 1111 15567777776643
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.18 E-value=8.9e-06 Score=82.73 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=31.1
Q ss_pred hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
..+++++.|.+++..+..++... ...+|+.|+|..+.-. ......+..+++|+.|++...+
T Consensus 448 ~~l~~L~~L~Ls~N~l~~ip~~~------~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 448 LFLPRLQELYISRNKLKTLPDAS------LFPVLLVMKISRNQLK---SVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCTTCCEEECCSSCCSSCCCGG------GCTTCCEEECCSSCCC---CCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCChhcEEECCCCccCcCCCcc------cCccCCEEecCCCccC---CcCHHHHhcCcccCEEEecCCC
Confidence 35666677777665555443211 0115666666543211 0112235667777777775543
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.16 E-value=2e-06 Score=80.04 Aligned_cols=187 Identities=17% Similarity=0.076 Sum_probs=101.6
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-ccc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITV 217 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~ 217 (463)
.+|..+. ++++.|+|+++.+. +..+..+++|+.|+|++..++.-.. ...++.|+.|++.++. +..+. ...
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~~~ 97 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLLGQ 97 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CSSCCCCTT
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CCcCchhhc
Confidence 4555443 57888888877654 3456678888888888776532111 1577888888888775 23221 223
Q ss_pred CCCCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476 218 PNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELL 289 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll 289 (463)
.+++|+.|.++++.+ ..+. -..++|++|.+++.... ..+..+++|+.+.+....-.... ...+
T Consensus 98 ~l~~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-------~~~~ 168 (290)
T 1p9a_G 98 TLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-------AGLL 168 (290)
T ss_dssp TCTTCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-------TTTT
T ss_pred cCCCCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-------HHHh
Confidence 456788888877763 2221 12467777777665332 12344566666666532211100 0123
Q ss_pred hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhhcCC
Q 047476 290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLKSCP 348 (463)
Q Consensus 290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~~P 348 (463)
..+++++.|.+++..++.++... +...++++|.|..... ..+..++...++.-+
T Consensus 169 ~~l~~L~~L~L~~N~l~~ip~~~-----~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLYTIPKGF-----FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT-----TTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred cCcCCCCEEECCCCcCCccChhh-----cccccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence 45667777777666655444321 1112566666654432 223344444554433
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.16 E-value=4.1e-06 Score=89.92 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=68.7
Q ss_pred CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccC
Q 047476 144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVP 218 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~ 218 (463)
|..+..+++|++|+|.++.+. +..+.++++|++|+|++..++.- ....+.++|.|+.|++.++. +..+. .-..
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 360 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKF 360 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEECCSCC-CCCCCSSCSCS
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEECCCCC-CCccChhhhcC
Confidence 444556788999999888653 45677888999999988765321 11235678889999988874 33322 1233
Q ss_pred CCCccEEEEecCCCCceeEEEECCCceEEEEeccc
Q 047476 219 NLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTE 253 (463)
Q Consensus 219 ~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~ 253 (463)
+++|+.|.+.++... .+. ..|+|+.+.+.++.
T Consensus 361 l~~L~~L~Ls~N~l~--~i~-~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 361 LEKLQTLDLRDNALT--TIH-FIPSIPDIFLSGNK 392 (844)
T ss_dssp CCCCCEEEEETCCSC--CCS-SCCSCSEEEEESCC
T ss_pred CCCCCEEECCCCCCC--ccc-CCCCcchhccCCCC
Confidence 568888888887632 111 16677777776653
No 66
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.14 E-value=2.7e-06 Score=79.15 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=33.9
Q ss_pred CceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEec
Q 047476 151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDK 229 (463)
Q Consensus 151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~ 229 (463)
++|++|.+.++.+. .+.+..+++|++|+|++..++.-. . +.+++.|+.|.+.++. +..+.--..+++|+.|.+.+
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCC
Confidence 34455555544433 223344555555555554442211 1 4455555555555543 22222222334555555555
Q ss_pred CC
Q 047476 230 CD 231 (463)
Q Consensus 230 c~ 231 (463)
|.
T Consensus 122 n~ 123 (291)
T 1h6t_A 122 NG 123 (291)
T ss_dssp SC
T ss_pred Cc
Confidence 44
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.13 E-value=8.9e-07 Score=88.79 Aligned_cols=187 Identities=11% Similarity=-0.019 Sum_probs=97.0
Q ss_pred ccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEE
Q 047476 147 VYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRL 225 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L 225 (463)
+..+++|++|+|++|.+..- ...++|++|+|++..++.-.. ..+|.|+.|.+.++.-.+... ....+++|+.|
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l--~~~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 149 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQEL--LVGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEE--EECTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE
T ss_pred cccCCCCCEEEecCCcCCCC--CCCCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEE
Confidence 45566777777777765421 123677777777765532211 245777777777765221111 11234577777
Q ss_pred EEecCCCCceeEE---E--ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEE
Q 047476 226 VIDKCDFNQYRYE---I--AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVL 298 (463)
Q Consensus 226 ~i~~c~~~~~~~~---i--~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L 298 (463)
.++++.+ ..+. + ..|+|+.|.++++... .....+++|+.+.+....-.... .-+..+++++.|
T Consensus 150 ~Ls~N~l--~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~l~~L~~L 219 (487)
T 3oja_A 150 DLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--------PEFQSAAGVTWI 219 (487)
T ss_dssp ECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--------GGGGGGTTCSEE
T ss_pred ECCCCCC--CCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCC--------HhHcCCCCccEE
Confidence 7777653 2211 1 2467777777665432 12234666777666533211000 013456777777
Q ss_pred EEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 299 TVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
.++++.+..++.... ...+|+.|.+..+... ...+..++..+|.|+.|.+.
T Consensus 220 ~Ls~N~l~~lp~~l~-----~l~~L~~L~l~~N~l~--c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNKLVLIEKALR-----FSQNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSCCCEECTTCC-----CCTTCCEEECTTCCBC--HHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCcCcccchhhc-----cCCCCCEEEcCCCCCc--CcchHHHHHhCCCCcEEecc
Confidence 776665554432211 1115666666543211 12455666667777666653
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.13 E-value=3.4e-06 Score=77.64 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=45.4
Q ss_pred ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCCcc
Q 047476 147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLRLK 223 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~L~ 223 (463)
+..+++|++|+|+++.+. .+.+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.- -..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCC
Confidence 445667777777766654 23455667777777776654321 11224566777777777664 222211 12344666
Q ss_pred EEEEecCC
Q 047476 224 RLVIDKCD 231 (463)
Q Consensus 224 ~L~i~~c~ 231 (463)
.|.+.+|.
T Consensus 137 ~L~L~~n~ 144 (272)
T 3rfs_A 137 YLNLAHNQ 144 (272)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66666654
No 69
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.11 E-value=1.6e-06 Score=89.12 Aligned_cols=102 Identities=24% Similarity=0.154 Sum_probs=69.5
Q ss_pred ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476 147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL 225 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L 225 (463)
+..+++|+.|.|++|.+. .+.+..+++|+.|+|++..+..- .-+..||.|+.|.|.+|. +..+..-..+++|+.|
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L 158 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTL 158 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEE
T ss_pred hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCc-cCCchhhcccCCCCEE
Confidence 567788999999988775 45677889999999998876431 126788999999999886 4444444456788888
Q ss_pred EEecCCCCceeEEEECCCceEEEEecc
Q 047476 226 VIDKCDFNQYRYEIAAPNLRFWKYSGT 252 (463)
Q Consensus 226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~ 252 (463)
.+++|.+....-.-..|+|+.|.++++
T Consensus 159 ~Ls~N~l~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 159 SLEDNQISDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred ECcCCcCCCchhhccCCCCCEEECcCC
Confidence 888886421100112455666665554
No 70
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.11 E-value=1.5e-06 Score=83.27 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=42.4
Q ss_pred hHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCcee---EE-EECCCceEEEEe
Q 047476 187 QSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR---YE-IAAPNLRFWKYS 250 (463)
Q Consensus 187 ~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~---~~-i~aP~L~~l~~~ 250 (463)
.++..++..+|.|++|.|.++.++.-..+. +++|++|.+..|...... +. ...|+|++|.++
T Consensus 162 ~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred cCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 457789999999999999987543322232 569999999887642111 11 146888888764
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.10 E-value=3.7e-06 Score=78.20 Aligned_cols=196 Identities=16% Similarity=0.001 Sum_probs=128.2
Q ss_pred ccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476 147 VYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV 226 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~ 226 (463)
+.++++++++++.++.+..-...-.++|+.|+|++..++.-. ...+.+++.|+.|.+.++. +..+.....+++|+.|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEE
Confidence 345678999999888775211122578999999988764311 1245789999999999986 55555446678999999
Q ss_pred EecCCCC-ceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476 227 IDKCDFN-QYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301 (463)
Q Consensus 227 i~~c~~~-~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~ 301 (463)
++++.+. +....-..|+|+.|.+++.... ..+..+++|+.+.+....-.... ...+..+++++.|.++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-------PGLLTPTPKLEKLSLA 156 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-------TTTTTTCTTCCEEECT
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-------hhhcccccCCCEEECC
Confidence 9988742 1111113588999999887533 23567888999988743211111 1235678999999998
Q ss_pred ccccccccCCCCCCCCCC-CCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476 302 SFLLQVIPHAEEPFGMTV-PLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG 360 (463)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~ 360 (463)
+..+..++... +. ..+|++|.|..+. +..+..-+...++|+.|++...+.
T Consensus 157 ~N~l~~l~~~~-----~~~l~~L~~L~L~~N~----l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 157 NNNLTELPAGL-----LNGLENLDTLLLQENS----LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TSCCSCCCTTT-----TTTCTTCCEEECCSSC----CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCcCCccCHHH-----hcCcCCCCEEECCCCc----CCccChhhcccccCCeEEeCCCCc
Confidence 87776554321 11 1278899886542 223333345667999999876543
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.10 E-value=9.1e-07 Score=83.45 Aligned_cols=184 Identities=11% Similarity=-0.010 Sum_probs=79.0
Q ss_pred CCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEEE
Q 047476 149 GHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLV 226 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~ 226 (463)
.+++|++|+|+++.+..- ...++|++|++++..++.-. ...++.|+.|.+.++.- ..+. ....+++|+.|.
T Consensus 78 ~l~~L~~L~Ls~n~l~~l--~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQEL--LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TCTTCCEEECCSSEEEEE--EECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEE
T ss_pred hcCCCCEEECcCCccccc--cCCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCC-CCccchhhhccCCCCEEE
Confidence 344555555554443210 01245555555544332211 11245555555555531 1110 111234566666
Q ss_pred EecCCCCceeEEE-----ECCCceEEEEecccce-e-eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEE
Q 047476 227 IDKCDFNQYRYEI-----AAPNLRFWKYSGTEGM-F-RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLT 299 (463)
Q Consensus 227 i~~c~~~~~~~~i-----~aP~L~~l~~~g~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~ 299 (463)
++++.+ ..+.. ..++|+.|.++++... + ....+++|+.+.+....-.... .-+..+++++.|.
T Consensus 151 Ls~N~l--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~~~l~~L~~L~ 220 (317)
T 3o53_A 151 LKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--------PEFQSAAGVTWIS 220 (317)
T ss_dssp CTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--------GGGGGGTTCSEEE
T ss_pred CCCCCC--CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcch--------hhhcccCcccEEE
Confidence 665542 22211 1356666666554322 1 1223555666555432111000 0134456666666
Q ss_pred EeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 300 VCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
+++..+..++..- ....+|++|.+..+.-. ...+..++..+|+|+.|.+.
T Consensus 221 L~~N~l~~l~~~~-----~~l~~L~~L~l~~N~~~--~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 221 LRNNKLVLIEKAL-----RFSQNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTSCCCEECTTC-----CCCTTCCEEECTTCCCB--HHHHHHHHHTCHHHHHHHHH
T ss_pred CcCCcccchhhHh-----hcCCCCCEEEccCCCcc--CcCHHHHHhccccceEEECC
Confidence 6655544333211 01115666666543221 12455556666666666654
No 73
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=3.5e-06 Score=89.91 Aligned_cols=87 Identities=21% Similarity=0.221 Sum_probs=43.9
Q ss_pred eCCcCccCCCceeEEEeeeee-eCC----C-------CCCCCCccceEEeccEeechhHHHH--HHhcCCCceEEeeccc
Q 047476 142 DLPMHVYGHVGLESLELFSCN-INA----S-------RFNNFIALKELSLGWIQLSVQSIRE--LLVQCPFLESLSLKKC 207 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~-~~~----~-------~~~~l~~L~~L~L~~~~~~~~~l~~--lls~cp~Le~L~l~~c 207 (463)
.+|..+.++++|++|+|+++. +.. . .+..+++|+.|+|++..++ .+.. .+.+++.|+.|++.++
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTS
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCC
Confidence 455555666666666666664 321 1 2234456666666665554 3322 4556666666666655
Q ss_pred CCCceeecccCCCCccEEEEecCC
Q 047476 208 WEIEYLDITVPNLRLKRLVIDKCD 231 (463)
Q Consensus 208 ~~~~~~~i~~~~~~L~~L~i~~c~ 231 (463)
. +..+..-..+++|+.|.+.++.
T Consensus 584 ~-l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 584 K-VRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp C-CCBCCCCCTTSEESEEECCSSC
T ss_pred C-cccchhhcCCCcceEEECcCCc
Confidence 4 2222212223345555554443
No 74
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.06 E-value=1.5e-06 Score=81.34 Aligned_cols=83 Identities=18% Similarity=0.116 Sum_probs=36.5
Q ss_pred CCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee-ecccCCCCccEE
Q 047476 149 GHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL-DITVPNLRLKRL 225 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~-~i~~~~~~L~~L 225 (463)
.+++|++|+|+++.+. +..+..+++|++|++++..++.-.....+.+++.|+.|++.++...... ..-..+++|+.|
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 4455555555555432 2223445555555555554432111122345555555555555311111 011223455555
Q ss_pred EEecCC
Q 047476 226 VIDKCD 231 (463)
Q Consensus 226 ~i~~c~ 231 (463)
.+.++.
T Consensus 156 ~l~~n~ 161 (306)
T 2z66_A 156 KMAGNS 161 (306)
T ss_dssp ECTTCE
T ss_pred ECCCCc
Confidence 555544
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.06 E-value=2.4e-06 Score=78.56 Aligned_cols=182 Identities=16% Similarity=0.197 Sum_probs=109.2
Q ss_pred CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEE
Q 047476 149 GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRL 225 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L 225 (463)
..++|++|.+.++.+. .+.+..+++|+.|+|++..++.- .-+.+++.|+.|.+.++. +..+. .-..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence 3456777877777664 34566788888888888766432 135678888888888875 33322 12345688888
Q ss_pred EEecCCCCceeEE---E-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceE
Q 047476 226 VIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRV 297 (463)
Q Consensus 226 ~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~ 297 (463)
.+.+|.+ ..+. + ..++|++|.++++... + .+..+++|+.+.+....-.... ...+..+++++.
T Consensus 115 ~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~ 185 (272)
T 3rfs_A 115 VLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-------EGVFDKLTQLKD 185 (272)
T ss_dssp ECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCTTCCE
T ss_pred ECCCCcC--CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-------HHHhcCCccCCE
Confidence 8888763 2221 1 2478888888776432 1 2456777888877644211111 123456788899
Q ss_pred EEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476 298 LTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI 357 (463)
Q Consensus 298 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~ 357 (463)
|.+.+..+..++... +. ...+|++|.+..+.. ...||+|+.|.+..
T Consensus 186 L~L~~N~l~~~~~~~--~~--~l~~L~~L~l~~N~~----------~~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGV--FD--RLTSLQYIWLHDNPW----------DCTCPGIRYLSEWI 231 (272)
T ss_dssp EECCSSCCSCCCTTT--TT--TCTTCCEEECCSSCB----------CCCTTTTHHHHHHH
T ss_pred EECCCCcCCccCHHH--Hh--CCcCCCEEEccCCCc----------cccCcHHHHHHHHH
Confidence 988876665433210 11 112688888865431 23466777666543
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.06 E-value=3.4e-05 Score=77.90 Aligned_cols=183 Identities=14% Similarity=0.049 Sum_probs=91.3
Q ss_pred eeEEEeeeeeeCCCCC-CCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCc--ee-ecccCCCCccEEEEe
Q 047476 153 LESLELFSCNINASRF-NNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIE--YL-DITVPNLRLKRLVID 228 (463)
Q Consensus 153 L~~L~L~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~--~~-~i~~~~~~L~~L~i~ 228 (463)
|++|++.++.+.+..+ ..+++|++|+|++..+++... ..+.+++.|+.|.+.++.-.+ .+ ..-..+++|+.|.++
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 4444444444432221 456666666666665543111 223566666666666665221 11 011234566666666
Q ss_pred cCCCCc--ee-EEEECCCceEEEEecccce-eeeecC-CCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecc
Q 047476 229 KCDFNQ--YR-YEIAAPNLRFWKYSGTEGM-FRVERQ-NFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSF 303 (463)
Q Consensus 229 ~c~~~~--~~-~~i~aP~L~~l~~~g~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~ 303 (463)
+|.... .. ..-..++|++|.++++... ...... ++|+.+.+....-... ..-+..+++++.|.+++.
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~i--------p~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI--------PKQVVKLEALQELNVASN 454 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCC--------CGGGGGCTTCCEEECCSS
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccccc--------chhhhcCCCCCEEECCCC
Confidence 665311 10 0112466666666655321 111122 4677666654321111 111337899999999888
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCC--chhhHH-HHhhhcCC
Q 047476 304 LLQVIPHAEEPFGMTVPLEVKHLTLNAGMHP--HEYYGI-NFMLKSCP 348 (463)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l-~~lL~~~P 348 (463)
.+..++.. .+. ...+|+.|.+..+.-. .+..++ ...++.-+
T Consensus 455 ~l~~l~~~--~~~--~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~ 498 (520)
T 2z7x_B 455 QLKSVPDG--IFD--RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 498 (520)
T ss_dssp CCCCCCTT--TTT--TCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred cCCccCHH--Hhc--cCCcccEEECcCCCCcccCCchHHHHHHHHhcc
Confidence 77755433 011 1127899998765432 233444 55565544
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.06 E-value=7e-06 Score=88.11 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=70.3
Q ss_pred CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee--ecccCCCCccEE
Q 047476 151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL--DITVPNLRLKRL 225 (463)
Q Consensus 151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~--~i~~~~~~L~~L 225 (463)
++|++|+|+++.+. +..+..+++|+.|+|++..++.-. ...+.+++.|+.|++.++. +..+ ..-..+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEE
Confidence 57888888877543 455667888888888877653211 1234678888888888775 2222 122345688888
Q ss_pred EEecCCCCceeEE----EECCCceEEEEecccceeeeecCCCccEEEEe
Q 047476 226 VIDKCDFNQYRYE----IAAPNLRFWKYSGTEGMFRVERQNFLTEVELD 270 (463)
Q Consensus 226 ~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~ 270 (463)
.+.++.+ ..+. -..|+|+.|.++++... .+..+++|+.+.+.
T Consensus 344 ~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 344 DLQKNHI--AIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLS 389 (844)
T ss_dssp ECCSCCC--CCCCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEEE
T ss_pred ECCCCCC--CccChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhccC
Confidence 8887763 2111 22578888888776432 22335566666654
No 78
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.05 E-value=2.6e-06 Score=87.83 Aligned_cols=194 Identities=13% Similarity=0.047 Sum_probs=118.4
Q ss_pred ccCCCceeEEEeeeeeeC-----CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee--ecccCC
Q 047476 147 VYGHVGLESLELFSCNIN-----ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL--DITVPN 219 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-----~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~--~i~~~~ 219 (463)
+..+++|++|+|+++.+. +..+..+++|++|+|++..+..-. ..+.+++.|+.|.+.++.-.+.. ..-..+
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 446778999999887653 334457888999998887653311 34567888999988887522211 122346
Q ss_pred CCccEEEEecCCCCceeE----EEECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476 220 LRLKRLVIDKCDFNQYRY----EIAAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR 290 (463)
Q Consensus 220 ~~L~~L~i~~c~~~~~~~----~i~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~ 290 (463)
++|+.|.+++|.. ... .-..++|++|.+.++... ..+..+++|+.+.+....-... ....+.
T Consensus 424 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~ 494 (606)
T 3vq2_A 424 EKLLYLDISYTNT--KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-------SWGVFD 494 (606)
T ss_dssp TTCCEEECTTSCC--EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-------CTTTTT
T ss_pred ccCCEEECcCCCC--CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-------Chhhhc
Confidence 6888888888863 111 113578888888776322 2356678888888764321100 012356
Q ss_pred cCccceEEEEeccccccc-cCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCC-CcceEEEEcCCC
Q 047476 291 QLEIVRVLTVCSFLLQVI-PHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP-SLQTLTINIGPG 360 (463)
Q Consensus 291 ~l~~l~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P-~L~~L~l~~~~~ 360 (463)
.+++++.|.+++..+..+ +..- . ...+|++|++..+. +..+..-+...| +|+.|++...+.
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~---~--~l~~L~~L~l~~N~----l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHY---N--QLYSLSTLDCSFNR----IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGT---T--TCTTCCEEECTTSC----CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ccccCCEEECCCCcCCCcCHHHc---c--CCCcCCEEECCCCc----CcccCHhHhhhcccCcEEEccCCCc
Confidence 788899999987665533 1111 1 11168888886542 122333366676 599999876544
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.05 E-value=6e-06 Score=81.88 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=34.0
Q ss_pred CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEE
Q 047476 151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRL 225 (463)
Q Consensus 151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L 225 (463)
++|++|+|+++.+. +..+..+++|++|+|++..+...--...+.+++.|+.|++.++.- ..+. .-..+++|+.|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEE
Confidence 34555555554432 234445555555555544321111111234455555555555431 2110 11223455555
Q ss_pred EEecCC
Q 047476 226 VIDKCD 231 (463)
Q Consensus 226 ~i~~c~ 231 (463)
.+.+|.
T Consensus 109 ~L~~n~ 114 (455)
T 3v47_A 109 TLTQCN 114 (455)
T ss_dssp ECTTSC
T ss_pred eCCCCC
Confidence 555554
No 80
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.03 E-value=3.4e-06 Score=71.37 Aligned_cols=89 Identities=21% Similarity=0.190 Sum_probs=67.9
Q ss_pred eCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---eccc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITV 217 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~ 217 (463)
.+|..+..+++|++|+|.+|.+. ...+..+++|+.|+|++..++.. +..++.++|.|+.|++.++. +..+ ..-.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh
Confidence 56766677889999999999775 35667899999999999877543 55667789999999999985 3332 2334
Q ss_pred CCCCccEEEEecCCC
Q 047476 218 PNLRLKRLVIDKCDF 232 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~ 232 (463)
.+++|+.|.+.+|.+
T Consensus 118 ~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 118 KLECLKSLDLFNCEV 132 (168)
T ss_dssp SCSCCCEEECCSSGG
T ss_pred cCCCCCEEEeeCCcC
Confidence 567888888888864
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.03 E-value=4e-07 Score=85.66 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=26.1
Q ss_pred ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
++++.|.++++.+..++... . .+|++|+|..+.- ..+ ..+..+|+|+.|++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~-----~--~~L~~L~Ls~N~l----~~~-~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGL-----P--AKLRVLDLSSNRL----NRA-PQPDELPEVDNLTLD 302 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCC-----C--SCCSCEECCSCCC----CSC-CCTTSCCCCSCEECS
T ss_pred CcCCEEECCCCCCCchhhhh-----c--CCCCEEECCCCcC----CCC-chhhhCCCccEEECc
Confidence 56666666655555333221 0 1566666654321 111 114556777777664
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.02 E-value=3.1e-06 Score=80.33 Aligned_cols=193 Identities=15% Similarity=0.114 Sum_probs=83.1
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL 220 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~ 220 (463)
.+..+++|++|+|+++.+. +..+..+++|++|+|++..++. +.. .-.+.|++|++.++. +..+. .-..++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L~l~~n~-i~~~~~~~~~~l~ 147 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVELRIHDNR-IRKVPKGVFSGLR 147 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEEECCSSC-CCCCCSGGGSSCS
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEEECCCCc-cCccCHhHhCCCc
Confidence 3445556666666665443 2345556666666666554421 000 012566666666554 22221 122344
Q ss_pred CccEEEEecCCCC---ceeEEEECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476 221 RLKRLVIDKCDFN---QYRYEIAAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR 296 (463)
Q Consensus 221 ~L~~L~i~~c~~~---~~~~~i~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~ 296 (463)
+|+.|.+.++... .....+...+|+.|.+++.... +.....++|+.+.+....-.... ...+..+++++
T Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~-------~~~l~~l~~L~ 220 (332)
T 2ft3_A 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE-------LEDLLRYSKLY 220 (332)
T ss_dssp SCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC-------TTSSTTCTTCS
T ss_pred cCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC-------HHHhcCCCCCC
Confidence 6666666655421 0000111124555554443211 11111234555544422111000 01234556666
Q ss_pred EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
.|.+++..+..++... +. ...+|++|.+..+. +..+..-+..+|+|+.|++...
T Consensus 221 ~L~L~~N~l~~~~~~~--~~--~l~~L~~L~L~~N~----l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGS--LS--FLPTLRELHLDNNK----LSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCBCCSSCCCCCCTTG--GG--GCTTCCEEECCSSC----CCBCCTTGGGCTTCCEEECCSS
T ss_pred EEECCCCcCCcCChhH--hh--CCCCCCEEECCCCc----CeecChhhhcCccCCEEECCCC
Confidence 6666655444322110 00 01156666665432 1122223566777777777544
No 83
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.01 E-value=3.7e-06 Score=85.97 Aligned_cols=244 Identities=13% Similarity=0.054 Sum_probs=148.3
Q ss_pred CCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476 143 LPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL 220 (463)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~ 220 (463)
.|..+..+++|++|++.++.+. +..+..+ +|++|++.++.+.. +.. ..++.|+.|.+.++........ ..++
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~ 347 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLP 347 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCC-CBCT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCcccccccc-ccCC
Confidence 4445566788999999888765 3345566 89999998887642 111 4789999999998864443333 4567
Q ss_pred CccEEEEecCCCCceeEE------EECCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476 221 RLKRLVIDKCDFNQYRYE------IAAPNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ 291 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~------i~aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~ 291 (463)
+|+.|.+.+|.. ..+. ...++|++|.++++... ..+..+++|+.+.+....-... .....+..
T Consensus 348 ~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~ 419 (570)
T 2z63_A 348 SLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM------SEFSVFLS 419 (570)
T ss_dssp TCCEEECCSSCC--BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC------TTSCTTTT
T ss_pred CCCEEeCcCCcc--CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc------cchhhhhc
Confidence 999999998873 2221 13689999998886432 2367888999988863211000 00013467
Q ss_pred CccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCC
Q 047476 292 LEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFE 371 (463)
Q Consensus 292 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~ 371 (463)
+++++.|.+++..+...... .+. ...+|++|.+..+.-. ...+...+..+|+|+.|++.......
T Consensus 420 l~~L~~L~l~~n~l~~~~~~--~~~--~l~~L~~L~l~~n~l~--~~~~p~~~~~l~~L~~L~l~~n~l~~--------- 484 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNG--IFN--GLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQCQLEQ--------- 484 (570)
T ss_dssp CTTCCEEECTTSCCEECCTT--TTT--TCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTSCCCE---------
T ss_pred CCCCCEEeCcCCcccccchh--hhh--cCCcCcEEECcCCcCc--cccchhhhhcccCCCEEECCCCcccc---------
Confidence 89999999977654432111 011 1127888888653211 01244567889999999995442210
Q ss_pred CCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476 372 LDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS 428 (463)
Q Consensus 372 ~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~ 428 (463)
. .+..+ ....+|+.+.+.+-.-..- ....+.+.+.|+.+.+...
T Consensus 485 ~-------~~~~~--~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 485 L-------SPTAF--NSLSSLQVLNMASNQLKSV----PDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp E-------CTTTT--TTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSS
T ss_pred C-------Chhhh--hcccCCCEEeCCCCcCCCC----CHHHhhcccCCcEEEecCC
Confidence 0 00111 1236889998876432211 1123466788999888754
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.99 E-value=7e-05 Score=75.53 Aligned_cols=61 Identities=26% Similarity=0.275 Sum_probs=40.8
Q ss_pred eCCcCccCCCceeEEEeeeeeeCC----CCCCCCCccceEEeccEeechhHHHHHHhcCCCc--eEEeecccC
Q 047476 142 DLPMHVYGHVGLESLELFSCNINA----SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFL--ESLSLKKCW 208 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~L--e~L~l~~c~ 208 (463)
.+|.. .+++|++|+|+++.+.. ..+..+++|++|+|++..++... +.+++.| +.|.+.++.
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECT
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccceeeEEEeeccc
Confidence 45554 56778888888776542 34567788888888877665533 3556667 888877764
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.99 E-value=8.4e-06 Score=73.32 Aligned_cols=171 Identities=11% Similarity=0.072 Sum_probs=98.6
Q ss_pred ceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCCccEE
Q 047476 152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLRLKRL 225 (463)
Q Consensus 152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~L~~L 225 (463)
+|++|+|+++.+. +..+..+++|++|+|++.. ++.-. ...+.+++.|+.|++.+|..+..+.. -..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 7999999988764 3467789999999999874 42110 11346889999999998666665542 2245688888
Q ss_pred EEecCCCCceeEEEECCCceEEEEecccceeeeecCCCcc---EEEEeeecCCCCchhHHHHHHHHhhcCccce-EEEEe
Q 047476 226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLT---EVELDFALQPDFDEEIGEFLYELLRQLEIVR-VLTVC 301 (463)
Q Consensus 226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~---~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~-~L~l~ 301 (463)
.+.++.+. .+ |. +..+++|+ .+.+........- ....+..+++++ .|.++
T Consensus 111 ~l~~n~l~--~l----p~--------------~~~l~~L~~L~~L~l~~N~~l~~i------~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 111 GIFNTGLK--MF----PD--------------LTKVYSTDIFFILEITDNPYMTSI------PVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEECCC--SC----CC--------------CTTCCBCCSEEEEEEESCTTCCEE------CTTTTTTTBSSEEEEECC
T ss_pred eCCCCCCc--cc----cc--------------cccccccccccEEECCCCcchhhc------CcccccchhcceeEEEcC
Confidence 88877631 11 10 11222333 4443321000000 001245678888 88887
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHH-HHhhhcC-CCcceEEEEc
Q 047476 302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGI-NFMLKSC-PSLQTLTINI 357 (463)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~lL~~~-P~L~~L~l~~ 357 (463)
+..+..++... +...+|++|.+..+.. +..+ ...+..+ ++|+.|++..
T Consensus 165 ~n~l~~i~~~~-----~~~~~L~~L~L~~n~~---l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 165 NNGFTSVQGYA-----FNGTKLDAVYLNKNKY---LTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp SCCCCEECTTT-----TTTCEEEEEECTTCTT---CCEECTTTTTTCSBCCSEEECTT
T ss_pred CCCCcccCHhh-----cCCCCCCEEEcCCCCC---cccCCHHHhhccccCCcEEECCC
Confidence 76665554321 1112688888765410 1111 2235667 8999998854
No 86
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.98 E-value=4.8e-06 Score=76.22 Aligned_cols=77 Identities=30% Similarity=0.349 Sum_probs=43.6
Q ss_pred CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEE
Q 047476 149 GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLV 226 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~ 226 (463)
.+++|++|++.++.+. .+.+..+++|++|+|++..+++-. . +.+++.|+.|++.++. +..+. +.. ++|+.|.
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEE
Confidence 4456666776666554 234556677777777766553211 1 5667777777777664 22221 111 4666666
Q ss_pred EecCC
Q 047476 227 IDKCD 231 (463)
Q Consensus 227 i~~c~ 231 (463)
+++|.
T Consensus 113 L~~N~ 117 (263)
T 1xeu_A 113 LDNNE 117 (263)
T ss_dssp CCSSC
T ss_pred ccCCc
Confidence 66665
No 87
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.97 E-value=1.4e-05 Score=73.90 Aligned_cols=185 Identities=17% Similarity=0.099 Sum_probs=92.3
Q ss_pred ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476 147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL 220 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~ 220 (463)
+..+++|++|+|+++.+. +..+..+++|++|+|++.. ++.-. ...+.+++.|+.|++.++.- ..+. .-..++
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~ 129 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGL-QELGPGLFRGLA 129 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCT
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcC-CEECHhHhhCCc
Confidence 445566677777666443 3445566667777766653 22110 12245566677777766642 2211 122345
Q ss_pred CccEEEEecCCCCceeEE---E-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476 221 RLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL 292 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l 292 (463)
+|+.|.+.++.+ ..+. + ..++|++|.+++.... + .+..+++|+.+.+....-... ....+..+
T Consensus 130 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l 200 (285)
T 1ozn_A 130 ALQYLYLQDNAL--QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-------HPHAFRDL 200 (285)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTC
T ss_pred CCCEEECCCCcc--cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc-------CHhHccCc
Confidence 666666666653 1111 1 2466666666665322 1 244566677776653221100 01224567
Q ss_pred ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhhc
Q 047476 293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLKS 346 (463)
Q Consensus 293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~ 346 (463)
++++.|.+++..+..++... +. ...+|++|.+....- .....++...++.
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~--~~--~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEA--LA--PLRALQYLRLNDNPWVCDCRARPLWAWLQK 252 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHH--HT--TCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred ccccEeeCCCCcCCcCCHHH--cc--cCcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence 88888888776555332110 00 111678888765532 2223344444443
No 88
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.95 E-value=3.5e-06 Score=77.10 Aligned_cols=36 Identities=19% Similarity=0.517 Sum_probs=34.1
Q ss_pred ccccCCchHHHHHHHhcCCchhHH-hhhccccchhhh
Q 047476 8 DMFSKLTNDLVTVIISYLPFKEAA-RTSILSRRWRHI 43 (463)
Q Consensus 8 D~is~LPd~lL~~ILs~Lp~~d~~-rts~lSrrWr~l 43 (463)
..++.||||+|..||++||.++++ +++.|||+||.+
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 468899999999999999999999 999999999986
No 89
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.95 E-value=2.7e-06 Score=88.26 Aligned_cols=206 Identities=13% Similarity=0.109 Sum_probs=104.4
Q ss_pred eCCc--CccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCC-ceEEeecccCCCceeec-
Q 047476 142 DLPM--HVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPF-LESLSLKKCWEIEYLDI- 215 (463)
Q Consensus 142 ~lp~--~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~-Le~L~l~~c~~~~~~~i- 215 (463)
.+|. .+..+++|++|+|+++.+. .+.+..+++|++|+|++..++ .+..-+.+++. |+.|++.++. +..+.-
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNK-LKYIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSC-CSSCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCc-Ccccchh
Confidence 5666 5666777777777777543 225566777777777776654 33333566777 8888777765 222211
Q ss_pred -c-cCCCCccEEEEecCCCCc---eeEE------EECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchh
Q 047476 216 -T-VPNLRLKRLVIDKCDFNQ---YRYE------IAAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEE 280 (463)
Q Consensus 216 -~-~~~~~L~~L~i~~c~~~~---~~~~------i~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~ 280 (463)
. ..+++|+.|.+++|.+.. ..+. ...++|+.|.++++... + .+..+++|+.+.+....-......
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 1 112367777777765411 1111 13456777777665432 1 122356677776653221100000
Q ss_pred HHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476 281 IGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI 357 (463)
Q Consensus 281 ~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~ 357 (463)
........++.+++++.|.++...+..++.... .....+|++|.|..+. +..+..-+..+++|+.|++..
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~---~~~l~~L~~L~Ls~N~----l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR---ATTLPYLVGIDLSYNS----FSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBCCGGGS---TTTCTTCCEEECCSSC----CSSCCCGGGGCSSCCEEECCS
T ss_pred HhccccccccccCCccEEECcCCcCCccChhhh---hccCCCcCEEECCCCC----CCCcChhhhcCCCCCEEECCC
Confidence 000000001122367777776665554332110 0011267777775432 122333455678888887743
No 90
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.93 E-value=3.7e-06 Score=69.54 Aligned_cols=89 Identities=24% Similarity=0.234 Sum_probs=67.9
Q ss_pred eCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---eccc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITV 217 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~ 217 (463)
.+|..+..+++|++|++++|.+. ...+..+++|++|+|++..++.. +...+.+++.|+.|++.++. +..+ ..-.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence 46666677889999999998775 35667899999999999877543 56677789999999999986 3332 2334
Q ss_pred CCCCccEEEEecCCC
Q 047476 218 PNLRLKRLVIDKCDF 232 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~ 232 (463)
.+++|+.|.+.+|.+
T Consensus 111 ~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 111 KLENLKSLDLFNCEV 125 (149)
T ss_dssp GCTTCCEEECTTCGG
T ss_pred hCCCCCEEeCcCCcc
Confidence 466888888888763
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.91 E-value=1.7e-06 Score=82.16 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=47.6
Q ss_pred CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEE
Q 047476 151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVI 227 (463)
Q Consensus 151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i 227 (463)
++|++|+|+++.+. +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.... .++|+.|.+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNH-LVEIPPNL-PSSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSC-CCSCCSSC-CTTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCc-CCccCccc-cccCCEEEC
Confidence 35666666665442 33455666666666665544211 01223556666666666554 22221111 136666666
Q ss_pred ecCCCCceeEE----EECCCceEEEEecc
Q 047476 228 DKCDFNQYRYE----IAAPNLRFWKYSGT 252 (463)
Q Consensus 228 ~~c~~~~~~~~----i~aP~L~~l~~~g~ 252 (463)
.++.. ..+. -..++|+.|.+.+.
T Consensus 131 ~~n~i--~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 131 HDNRI--RKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CSSCC--CCCCSGGGSSCSSCCEEECCSC
T ss_pred CCCcc--CccCHhHhCCCccCCEEECCCC
Confidence 66542 1111 12456666666554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.89 E-value=1e-05 Score=73.39 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=95.5
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--IT 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~ 216 (463)
.+|..+. ++|++|+|+++.+. +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+. .-
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 103 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPLGVF 103 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccChhHh
Confidence 4665544 57899999988764 34577899999999998776431 12335678999999999876 33332 22
Q ss_pred cCCCCccEEEEecCCCCceeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476 217 VPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR 296 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~ 296 (463)
..+++|+.|.+.++.+ ..+.- ..+..+++|+.+.+....-.... ...+..+++++
T Consensus 104 ~~l~~L~~L~L~~N~l--~~~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~ 158 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQL--KSLPS----------------GVFDRLTKLKELRLNTNQLQSIP-------AGAFDKLTNLQ 158 (251)
T ss_dssp TTCTTCCEEECCSSCC--CCCCT----------------TTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCTTCC
T ss_pred cccCCCCEEEcCCCcC--CCcCh----------------hHhccCCcccEEECcCCcCCccC-------HHHcCcCcCCC
Confidence 3456888888887763 11110 01122334444444321110000 01244677888
Q ss_pred EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCC---chhhHHHHhhh
Q 047476 297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHP---HEYYGINFMLK 345 (463)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~l~~lL~ 345 (463)
.|.|++..+..++... +. ...+|++|.+..+.-. .+...+...++
T Consensus 159 ~L~L~~N~l~~~~~~~--~~--~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 159 TLSLSTNQLQSVPHGA--FD--RLGKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp EEECCSSCCSCCCTTT--TT--TCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred EEECCCCcCCccCHHH--Hh--CCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 8888776655443211 11 1126788887654321 33444555554
No 93
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.88 E-value=7.1e-06 Score=69.38 Aligned_cols=19 Identities=21% Similarity=0.058 Sum_probs=15.1
Q ss_pred HhhhcCCCcceEEEEcCCC
Q 047476 342 FMLKSCPSLQTLTINIGPG 360 (463)
Q Consensus 342 ~lL~~~P~L~~L~l~~~~~ 360 (463)
..+..+|+|+.|++.....
T Consensus 141 ~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 141 SVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHTTCSSCCEETTEETTS
T ss_pred HHHHhCccCcEecCCCCCh
Confidence 4678899999999877653
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.85 E-value=0.00015 Score=73.82 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=34.6
Q ss_pred hcCccceEEEEecccccc-ccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476 290 RQLEIVRVLTVCSFLLQV-IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP 359 (463)
Q Consensus 290 ~~l~~l~~L~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~ 359 (463)
..+++++.|.+++..+.. ++.. + ....+|+.|.+..+.- .++..+...+..+++|+.|++....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~---~--~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG---C--STLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT---C--CSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCCceEEECCCCccccchhhh---h--cccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCc
Confidence 455666666665544332 1110 0 1112678888765421 2233555667788888888886543
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.85 E-value=1.5e-05 Score=73.06 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=91.0
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL 220 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~ 220 (463)
.+..+++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|.+.++. +..+. .-..++
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence 4567789999999988764 234567999999999987664211 1345788999999999875 33322 123467
Q ss_pred CccEEEEecCCCCceeEEE----ECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476 221 RLKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR 296 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~ 296 (463)
+|+.|.++++.+ ..+.. ..++|++|.+++.... ... ...+..+++++
T Consensus 134 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~--------------------~~~-------~~~~~~l~~L~ 184 (270)
T 2o6q_A 134 KLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLK--------------------RVP-------EGAFDKLTELK 184 (270)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCS--------------------CCC-------TTTTTTCTTCC
T ss_pred CCCEEECCCCcC--CccCHhHccCCcccceeEecCCcCc--------------------EeC-------hhHhccCCCcC
Confidence 999999998863 22110 1355555555443210 000 01234567778
Q ss_pred EEEEeccccccccCCCCCCCCCCCCceeEEEEecCC
Q 047476 297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGM 332 (463)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 332 (463)
.|.+++..+..++... +. ...+|++|.+....
T Consensus 185 ~L~L~~N~l~~~~~~~--~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGA--FD--SLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSCCSCCCTTT--TT--TCTTCCEEECCSSC
T ss_pred EEECCCCcCCcCCHHH--hc--cccCCCEEEecCCC
Confidence 8887766555443211 11 11167788876543
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.84 E-value=2.7e-06 Score=81.80 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=31.3
Q ss_pred HHHHhhc-CccceEEEEeccccccccCCCCCCCCCC-CCceeEEEEecCC-CCchhhHHHHhhhcCCCcceEE
Q 047476 285 LYELLRQ-LEIVRVLTVCSFLLQVIPHAEEPFGMTV-PLEVKHLTLNAGM-HPHEYYGINFMLKSCPSLQTLT 354 (463)
Q Consensus 285 ~~~ll~~-l~~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~l~~lL~~~P~L~~L~ 354 (463)
+...+.. .++++.|+|+++.+.......-. .... ..+|++|.+..+. .......+..+.+.++++++|.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHH-HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHH-HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 3344444 45888888876654432110000 0001 1168888887643 1112233444444444444444
No 97
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.82 E-value=4.5e-06 Score=75.49 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=32.1
Q ss_pred ccCCchHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476 10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI 43 (463)
Q Consensus 10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l 43 (463)
|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999953
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.82 E-value=1.2e-05 Score=79.83 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=14.5
Q ss_pred ceeEEEeeeeeeC-CCCCCCCCccceEEeccEe
Q 047476 152 GLESLELFSCNIN-ASRFNNFIALKELSLGWIQ 183 (463)
Q Consensus 152 ~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~ 183 (463)
+|++|++++|.+. .+.+..+++|++|++++..
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCc
Confidence 4455555544432 1234444555555554443
No 99
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.79 E-value=9e-06 Score=80.64 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=29.0
Q ss_pred ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
++++.|.+++..+..++... .+|+.|++..+.-. .+.. .+++|+.|++...
T Consensus 317 ~~L~~L~Ls~N~l~~lp~~~--------~~L~~L~L~~N~l~----~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 317 PSLEELNVSNNKLIELPALP--------PRLERLIASFNHLA----EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC--------TTCCEEECCSSCCS----CCCC---CCTTCCEEECCSS
T ss_pred CcCCEEECCCCccccccccC--------CcCCEEECCCCccc----cccc---hhhhccEEECCCC
Confidence 46777777665554433221 26888887654211 1111 3678888888654
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.78 E-value=2.2e-05 Score=70.53 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=51.2
Q ss_pred CccCCCceeEEEeeeee-eC---CCCCCCCCccceEEecc-EeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476 146 HVYGHVGLESLELFSCN-IN---ASRFNNFIALKELSLGW-IQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL 220 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~-~~---~~~~~~l~~L~~L~L~~-~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~ 220 (463)
.+..+++|++|+|+++. +. +..+..+++|++|+|++ ..++.-. ...+.+++.|+.|++.++. +..+.--..++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTG-LKMFPDLTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence 34567788888888874 43 34566788888888876 3332100 1234578888888888875 22222122344
Q ss_pred Ccc---EEEEecC
Q 047476 221 RLK---RLVIDKC 230 (463)
Q Consensus 221 ~L~---~L~i~~c 230 (463)
+|+ .|.+.++
T Consensus 128 ~L~~L~~L~l~~N 140 (239)
T 2xwt_C 128 STDIFFILEITDN 140 (239)
T ss_dssp BCCSEEEEEEESC
T ss_pred ccccccEEECCCC
Confidence 555 7777776
No 101
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.76 E-value=2.3e-05 Score=66.20 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=49.1
Q ss_pred CCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec---cc---CCCCccEEEEecCC
Q 047476 171 FIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI---TV---PNLRLKRLVIDKCD 231 (463)
Q Consensus 171 l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i---~~---~~~~L~~L~i~~c~ 231 (463)
-.+|+.|+|+++.+++.++..+ ++|+.|+.|+|.+|..+++..+ .. .+++|++|++++|.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 3479999999999999998776 7999999999999988776432 22 13479999999987
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.76 E-value=5.3e-06 Score=68.60 Aligned_cols=55 Identities=22% Similarity=0.118 Sum_probs=28.8
Q ss_pred CceeEEEeeeeeeC----CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 151 VGLESLELFSCNIN----ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 151 ~~L~~L~L~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
++|++|++++|.+. +..+..+++|+.|++++..++.- ..+.+++.|+.|++.++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc
Confidence 45666766666554 12334566666666665544322 234445555555555543
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.75 E-value=0.00012 Score=74.58 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=92.9
Q ss_pred ceeEEEeeeeeeCCCCC-CCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee----cccCCCCccEEE
Q 047476 152 GLESLELFSCNINASRF-NNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD----ITVPNLRLKRLV 226 (463)
Q Consensus 152 ~L~~L~L~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~----i~~~~~~L~~L~ 226 (463)
+|++|++.++.+.+..+ ..+++|++|+|++..+++. +...+.+++.|+.|.+.++. +..+. .-..+++|+.|.
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence 46666666665543332 5677777777777665431 12234567777777777764 22211 123355777777
Q ss_pred EecCCCCc--e-eEEEECCCceEEEEecccce-eeeecC-CCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476 227 IDKCDFNQ--Y-RYEIAAPNLRFWKYSGTEGM-FRVERQ-NFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301 (463)
Q Consensus 227 i~~c~~~~--~-~~~i~aP~L~~l~~~g~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~ 301 (463)
++++.... . ...-..++|+.|.++++... .....+ ++|+.+.+....-.... .-+..+++++.|.++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip--------~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP--------KDVTHLQALQELNVA 481 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC--------TTTTSSCCCSEEECC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC--------hhhcCCCCCCEEECC
Confidence 77766311 1 11123467777777665432 112223 46777777643211110 112378899999998
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCC
Q 047476 302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH 333 (463)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 333 (463)
+..+..++... +.. ..+|+.|.+....-
T Consensus 482 ~N~l~~l~~~~--~~~--l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 482 SNQLKSVPDGV--FDR--LTSLQYIWLHDNPW 509 (562)
T ss_dssp SSCCCCCCTTS--TTT--CTTCCCEECCSCCB
T ss_pred CCCCCCCCHHH--Hhc--CCCCCEEEecCCCc
Confidence 88777655431 111 12788888876543
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.75 E-value=1.8e-05 Score=82.70 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=8.3
Q ss_pred CCCccEEEEecCC
Q 047476 219 NLRLKRLVIDKCD 231 (463)
Q Consensus 219 ~~~L~~L~i~~c~ 231 (463)
+++|+.|.+.++.
T Consensus 404 l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 404 LGHLEVLDLGLNE 416 (680)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEeCCCCc
Confidence 4567777776665
No 105
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.72 E-value=9.1e-06 Score=85.01 Aligned_cols=121 Identities=16% Similarity=0.054 Sum_probs=59.8
Q ss_pred ccCCCceeEEEeeeeeeC-----CCCCCC--CCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--ccc
Q 047476 147 VYGHVGLESLELFSCNIN-----ASRFNN--FIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITV 217 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~-----~~~~~~--l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~ 217 (463)
+..+++|++|+|++|.+. ...+.. .++|+.|++++..++.-. ...+.+++.|+.|++.++.-.+.+. .-.
T Consensus 349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 456778888888776432 122222 246777777666543210 1224566777777777665222211 112
Q ss_pred CCCCccEEEEecCCCCceeEE----EECCCceEEEEecccc------eeeeecCCCccEEEEe
Q 047476 218 PNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEG------MFRVERQNFLTEVELD 270 (463)
Q Consensus 218 ~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~------~~~~~~~~~L~~l~l~ 270 (463)
.+++|+.|.+++|.. ..+. ...|+|+.|.+.+... +..+..+++|+.+.+.
T Consensus 428 ~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 428 GLENIFEIYLSYNKY--LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp TCTTCCEEECCSCSE--EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred CcccccEEecCCCCc--ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 345666666666542 1100 0245666666554321 1223445556655554
No 106
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.72 E-value=3.1e-05 Score=71.19 Aligned_cols=174 Identities=13% Similarity=0.092 Sum_probs=102.8
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCC
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLR 221 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~ 221 (463)
.+..+++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|.+.++....... .-..+++
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 4566789999999988654 345778999999999987653221 1235678999999999875222111 1234568
Q ss_pred ccEEEEecCCCCc---eeEEEECCCceEEEEecccce-e---eeecCCCcc----EEEEeeecCCCCchhHHHHHHHHhh
Q 047476 222 LKRLVIDKCDFNQ---YRYEIAAPNLRFWKYSGTEGM-F---RVERQNFLT----EVELDFALQPDFDEEIGEFLYELLR 290 (463)
Q Consensus 222 L~~L~i~~c~~~~---~~~~i~aP~L~~l~~~g~~~~-~---~~~~~~~L~----~l~l~~~~~~~~~~~~~~~~~~ll~ 290 (463)
|+.|.+.++.+.. ....-..++|++|.++++... + .+..++.|+ .+.+....-.... .-..
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~--------~~~~ 197 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--------PGAF 197 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC--------TTSS
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC--------cccc
Confidence 9999999887421 111113588999998876432 2 233444555 3333211100000 0011
Q ss_pred cCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCC
Q 047476 291 QLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGM 332 (463)
Q Consensus 291 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 332 (463)
...+++.|.+++..+..++... +. ...+|++|.+....
T Consensus 198 ~~~~L~~L~L~~n~l~~~~~~~--~~--~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 KEIRLKELALDTNQLKSVPDGI--FD--RLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEEEECCSSCCSCCCTTT--TT--TCCSCCEEECCSSC
T ss_pred CCCcccEEECCCCceeecCHhH--hc--ccccccEEEccCCc
Confidence 2347999999877666443211 01 11278899987653
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.67 E-value=0.00014 Score=74.97 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=109.0
Q ss_pred ceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476 140 VFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-- 214 (463)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-- 214 (463)
...+|..+. +++++|+|+++.+. +..|.++++|++|+|++..++.-. ...+.+++.|+.|+|.++. +..+.
T Consensus 43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALG 118 (635)
T ss_dssp CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGG
T ss_pred cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHH
Confidence 345665443 36888888887653 456778888888888887653100 1234678888888888875 44443
Q ss_pred cccCCCCccEEEEecCCCC-ceeEEE-ECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHH
Q 047476 215 ITVPNLRLKRLVIDKCDFN-QYRYEI-AAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYE 287 (463)
Q Consensus 215 i~~~~~~L~~L~i~~c~~~-~~~~~i-~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 287 (463)
.-..+++|+.|.+.+|... .....+ ..++|++|.+++.... ..+..++.|+.+.+....-.... ...+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~ 195 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY---CTDLRV 195 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC---GGGGHH
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc---cccccc
Confidence 2234668888888887631 111112 2577888877765321 22455677777776532211000 011111
Q ss_pred HhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476 288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 288 ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
+-..-.....+.++...+..++.. .+....+..|.+..... ........+...+.++...+...
T Consensus 196 L~~l~~~~~~~~ls~n~l~~i~~~-----~~~~~~~~~l~l~~n~~--~~~~~~~~~~~l~~l~~~~l~~~ 259 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLHKLTLRNNFD--SLNVMKTCIQGLAGLEVHRLVLG 259 (635)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTT-----TTTTCEEEEEEEESCCS--SHHHHHHHHHTTTTCEEEEEEEE
T ss_pred hhhhhhhhhhhhcccCcccccCcc-----cccchhhhhhhhhcccc--cccccchhhcCCccccccccccc
Confidence 111111223344443333322211 11222456666654332 23344556677777777766544
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.65 E-value=7.8e-05 Score=69.81 Aligned_cols=148 Identities=14% Similarity=0.064 Sum_probs=88.4
Q ss_pred cCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeec-hhHHHH--HHhcCCCceEEeecccCCCceee-----cc
Q 047476 148 YGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLS-VQSIRE--LLVQCPFLESLSLKKCWEIEYLD-----IT 216 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~-~~~l~~--lls~cp~Le~L~l~~c~~~~~~~-----i~ 216 (463)
..+++|++|+|++|.+. +..+..+++|++|+|++..+. ...+.. .+..+|.|+.|.+.+|. +..+. +.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence 35678888888888664 345567888888888887643 233321 23577888888888875 33221 11
Q ss_pred cCCCCccEEEEecCCCCce---eEEEE--CCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476 217 VPNLRLKRLVIDKCDFNQY---RYEIA--APNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR 290 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~~~~~---~~~i~--aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~ 290 (463)
..+++|+.|.++++.+... .+.-. .|+|++|.++++... +.-.-.++|+.+.+....-... ..+.
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~---------~~~~ 291 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA---------PQPD 291 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC---------CCTT
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC---------chhh
Confidence 2345888888888764211 01111 268888888776433 1111135788887764322111 1145
Q ss_pred cCccceEEEEecccc
Q 047476 291 QLEIVRVLTVCSFLL 305 (463)
Q Consensus 291 ~l~~l~~L~l~~~~~ 305 (463)
.+++++.|.+++..+
T Consensus 292 ~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 292 ELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCSCEECSSTTT
T ss_pred hCCCccEEECcCCCC
Confidence 678899999876543
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.64 E-value=1.8e-05 Score=80.39 Aligned_cols=183 Identities=14% Similarity=0.063 Sum_probs=111.0
Q ss_pred hCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHH
Q 047476 114 ARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELL 193 (463)
Q Consensus 114 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll 193 (463)
..+++.|++.... ...+|..++ ++|++|+|+++.+..-. ..+++|++|+|++..++. +.. +
T Consensus 58 ~~~L~~L~Ls~n~-------------L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~--ip~-l 118 (571)
T 3cvr_A 58 INQFSELQLNRLN-------------LSSLPDNLP--PQITVLEITQNALISLP-ELPASLEYLDACDNRLST--LPE-L 118 (571)
T ss_dssp HTTCSEEECCSSC-------------CSCCCSCCC--TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC--CCC-C
T ss_pred cCCccEEEeCCCC-------------CCccCHhHc--CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC--cch-h
Confidence 4578888885321 123666554 68999999999876322 568999999999987643 322 3
Q ss_pred hcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEEEecccce-ee-eecCCCccEEEEee
Q 047476 194 VQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM-FR-VERQNFLTEVELDF 271 (463)
Q Consensus 194 s~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~-~~-~~~~~~L~~l~l~~ 271 (463)
.+ .|+.|++.++. +..+.- .+++|+.|.++++.+. .+.-..++|+.|.++++... +. +. ++|+.+.+..
T Consensus 119 ~~--~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~--~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-LTMLPE--LPALLEYINADNNQLT--MLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVST 189 (571)
T ss_dssp CT--TCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCS
T ss_pred hc--CCCEEECCCCc-CCCCCC--cCccccEEeCCCCccC--cCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcC
Confidence 22 99999999886 333322 4669999999998742 22225679999998886432 11 22 6788887764
Q ss_pred ecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC
Q 047476 272 ALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH 333 (463)
Q Consensus 272 ~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 333 (463)
..-..... ... .+....+.++.|.|+++.+..++.... ...+|+.|.|..+.-
T Consensus 190 N~L~~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~l~-----~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 190 NLLESLPA-VPV---RNHHSEETEIFFRCRENRITHIPENIL-----SLDPTCTIILEDNPL 242 (571)
T ss_dssp SCCSSCCC-CC-----------CCEEEECCSSCCCCCCGGGG-----GSCTTEEEECCSSSC
T ss_pred CCCCchhh-HHH---hhhcccccceEEecCCCcceecCHHHh-----cCCCCCEEEeeCCcC
Confidence 32111100 000 122223334888888777665543211 112688888876543
No 110
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.64 E-value=0.00011 Score=68.90 Aligned_cols=194 Identities=15% Similarity=0.050 Sum_probs=109.9
Q ss_pred CCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCC-----CceeEEEeeeee
Q 047476 88 TIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGH-----VGLESLELFSCN 162 (463)
Q Consensus 88 ~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~~L~~L~L~~~~ 162 (463)
..++.+.+......+.....++ ...-..++.|++.-.. ...+|..+... ++|++|+|+++.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVS-------------WATRDAWLAELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCB-------------CSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred CCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCC-------------CcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence 4678888876643321100000 0112467888775321 11123333332 788999998886
Q ss_pred eC---CCCCCCCCccceEEeccEeech-hHHHHHH--hcCCCceEEeecccCCCcee-----ecccCCCCccEEEEecCC
Q 047476 163 IN---ASRFNNFIALKELSLGWIQLSV-QSIRELL--VQCPFLESLSLKKCWEIEYL-----DITVPNLRLKRLVIDKCD 231 (463)
Q Consensus 163 ~~---~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll--s~cp~Le~L~l~~c~~~~~~-----~i~~~~~~L~~L~i~~c~ 231 (463)
+. +..+..+++|++|+|++..+.. ..+..-+ ..++.|+.|++.++. +..+ .+...+++|+.|.++++.
T Consensus 161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 64 3456788889999998876532 2232223 678889999998885 3321 111234588889888886
Q ss_pred CCce---eEEEECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecccc
Q 047476 232 FNQY---RYEIAAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLL 305 (463)
Q Consensus 232 ~~~~---~~~i~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~ 305 (463)
+... ......++|+.|.++++... +.-.-.++|+.+.+....-... .. +..+++++.|.+.+..+
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~--------p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN--------PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC--------CC-TTTSCEEEEEECTTCTT
T ss_pred CCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC--------hh-HhhCCCCCEEeccCCCC
Confidence 4221 11122578888888876433 1111115677777764321111 11 55788899999876543
No 111
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.63 E-value=1.3e-05 Score=77.16 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=16.8
Q ss_pred hhHHHHhhhcCCCcceEEEEcC
Q 047476 337 YYGINFMLKSCPSLQTLTINIG 358 (463)
Q Consensus 337 ~~~l~~lL~~~P~L~~L~l~~~ 358 (463)
...+...++.+|+|++|+|...
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHhCCCCCEEeccCC
Confidence 3567777888999999988544
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.59 E-value=5.5e-05 Score=72.22 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=33.9
Q ss_pred HhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476 288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 288 ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~ 356 (463)
.+..+++++.|++++..++.++... + -++++|.+.... ....+.. +..+++|+.+++.
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~lp~~~-----~--~~L~~L~~l~~~---~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHSLPSYG-----L--ENLKKLRARSTY---NLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp TTTTEECCSEEECTTSCCCCCCSSS-----C--TTCCEEECTTCT---TCCCCCC-TTTCCSCCEEECS
T ss_pred HhccCcccchhhcCCCCcCccChhh-----h--ccchHhhhccCC---CcCcCCC-chhCcChhhCcCC
Confidence 3567788889998877777665322 1 156666653321 1112221 5667788887773
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.58 E-value=3.8e-05 Score=70.18 Aligned_cols=85 Identities=21% Similarity=0.204 Sum_probs=59.5
Q ss_pred eCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL 220 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~ 220 (463)
.+| .+..+++|++|+|+++.+. .+.+..+++|+.|+|++..++. +.. +.. +.|+.|++.++. +..+.--..++
T Consensus 55 ~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~L~~L~L~~N~-l~~~~~l~~l~ 128 (263)
T 1xeu_A 55 SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNG-IPS-ACLSRLFLDNNE-LRDTDSLIHLK 128 (263)
T ss_dssp CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTT-CCC-SSCCEEECCSSC-CSBSGGGTTCT
T ss_pred cch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCc-ccc-CcccEEEccCCc-cCCChhhcCcc
Confidence 345 4567789999999988775 2337789999999999887643 111 122 889999999885 44443334466
Q ss_pred CccEEEEecCCC
Q 047476 221 RLKRLVIDKCDF 232 (463)
Q Consensus 221 ~L~~L~i~~c~~ 232 (463)
+|+.|.++++.+
T Consensus 129 ~L~~L~Ls~N~i 140 (263)
T 1xeu_A 129 NLEILSIRNNKL 140 (263)
T ss_dssp TCCEEECTTSCC
T ss_pred cccEEECCCCcC
Confidence 888888888763
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.57 E-value=0.00024 Score=72.10 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=39.8
Q ss_pred CceeEEEeeeeeeCC-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEec
Q 047476 151 VGLESLELFSCNINA-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDK 229 (463)
Q Consensus 151 ~~L~~L~L~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~ 229 (463)
++|++|+|++|.+.. +.+.. +|+.|+|++..++. +.. .++.|+.|++.++. +..+. ...++|+.|.+++
T Consensus 100 ~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp--~~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ-LTMLP--ELPTSLEVLSVRN 169 (571)
T ss_dssp TTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCS
T ss_pred CCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCc-cCcCC--CcCCCcCEEECCC
Confidence 455555555554431 11211 55555555554422 111 45555555555553 22211 1233555555555
Q ss_pred CCCC-ceeEEEECCCceEEEEecc
Q 047476 230 CDFN-QYRYEIAAPNLRFWKYSGT 252 (463)
Q Consensus 230 c~~~-~~~~~i~aP~L~~l~~~g~ 252 (463)
|.+. +.. +. ++|+.|.++++
T Consensus 170 N~L~~lp~--l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 170 NQLTFLPE--LP-ESLEALDVSTN 190 (571)
T ss_dssp SCCSCCCC--CC-TTCCEEECCSS
T ss_pred CCCCCcch--hh-CCCCEEECcCC
Confidence 5431 111 11 55555555554
No 115
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.53 E-value=2.1e-05 Score=77.77 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=36.9
Q ss_pred ccccccCCchHHHHHHHhcCCchhHHhhhccccchhhhhe
Q 047476 6 DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWL 45 (463)
Q Consensus 6 ~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~ 45 (463)
..|.|+.||+|++.+||++||.+|+++++.|||+|+++-.
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999997643
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.50 E-value=5e-05 Score=68.73 Aligned_cols=103 Identities=20% Similarity=0.161 Sum_probs=68.5
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCC
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNL 220 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~ 220 (463)
.+..+++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+.- -..++
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 131 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence 4556789999999988764 334678999999999987764211 2345678999999999875 343321 23456
Q ss_pred CccEEEEecCCCCceeEE---E-ECCCceEEEEecc
Q 047476 221 RLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGT 252 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~ 252 (463)
+|+.|.+.++.+ ..+. + ..++|+.|.+++.
T Consensus 132 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 132 KLKELRLNTNQL--QSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS
T ss_pred cccEEECcCCcC--CccCHHHcCcCcCCCEEECCCC
Confidence 888888888763 2221 1 2356666666554
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.47 E-value=1.4e-06 Score=76.01 Aligned_cols=83 Identities=23% Similarity=0.178 Sum_probs=43.8
Q ss_pred CccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccE
Q 047476 146 HVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKR 224 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~ 224 (463)
.+..+++|++|+|+++.+. .+.+..+++|+.|+|++..++ .+...+..+|.|+.|++.++. +..+.--..+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCE
Confidence 4445566666666666554 224445666666666666554 233344455666666666653 222211112335555
Q ss_pred EEEecCC
Q 047476 225 LVIDKCD 231 (463)
Q Consensus 225 L~i~~c~ 231 (463)
|.+.++.
T Consensus 120 L~l~~N~ 126 (198)
T 1ds9_A 120 LYMSNNK 126 (198)
T ss_dssp EEESEEE
T ss_pred EECCCCc
Confidence 5555544
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.46 E-value=6e-05 Score=67.25 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=62.5
Q ss_pred ceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476 140 VFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-- 214 (463)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-- 214 (463)
...+|..+. ++|++|+|+++.+. +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+.
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~ 106 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-LTVLPSA 106 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-CCccChh
Confidence 345665443 68999999998765 345678999999999988763211 1345788999999999875 44332
Q ss_pred cccCCCCccEEEEecCCC
Q 047476 215 ITVPNLRLKRLVIDKCDF 232 (463)
Q Consensus 215 i~~~~~~L~~L~i~~c~~ 232 (463)
+-..+++|+.|.+.++.+
T Consensus 107 ~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp TTTTCTTCCEEECCSSCC
T ss_pred HhCcchhhCeEeccCCcc
Confidence 123466888888888763
No 119
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.41 E-value=0.0002 Score=68.45 Aligned_cols=153 Identities=17% Similarity=0.048 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCCCccEEEEEEeCCc-ch--h-HHHHHHHHH-hCCCeEEEEeecCCCCCCCCCCCC-ccceeCCcCc
Q 047476 74 FINFVHQWIGQYNATIVKAFRLVFSRPV-NF--L-VQNCISFAI-ARDVKELALDFHDPLWPEHGSENH-EAVFDLPMHV 147 (463)
Q Consensus 74 ~~~~v~~~L~~~~~~~l~~l~l~~~~~~-~~--~-i~~wl~~~~-~~~v~~L~l~~~~~~~~~~~~~~~-~~~~~lp~~l 147 (463)
+.+.+.++|.......|+.+.+...... +. . +..++..+- -.++++|.+...... . .... .....++..+
T Consensus 93 ~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e--~--~~is~~~~~~L~~ll 168 (362)
T 2ra8_A 93 GVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFE--E--QEISWIEQVDLSPVL 168 (362)
T ss_dssp TCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTT--T--CCGGGCBCCBCHHHH
T ss_pred HHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchh--h--cccccccccCHHHHH
Confidence 4445566665554445777776633221 11 1 333333221 258888877421100 0 0000 0011244445
Q ss_pred cCCCceeEEEeeeee-eCCCCCCCCCccceEEeccEeechhHHHHHHh-cCCCceEEeecccCC-------Cceee--cc
Q 047476 148 YGHVGLESLELFSCN-INASRFNNFIALKELSLGWIQLSVQSIRELLV-QCPFLESLSLKKCWE-------IEYLD--IT 216 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls-~cp~Le~L~l~~c~~-------~~~~~--i~ 216 (463)
..+++|++|.|.++. +..+.+ ..++|++|.|..+.++...+..+.. .+|.|+.|+|..+.. +..+. +.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred hcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 567899999998873 333333 4899999999988888888877764 799999999864211 11111 11
Q ss_pred -cCCCCccEEEEecCC
Q 047476 217 -VPNLRLKRLVIDKCD 231 (463)
Q Consensus 217 -~~~~~L~~L~i~~c~ 231 (463)
..+|+|+.|.+.+|.
T Consensus 248 ~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAE 263 (362)
T ss_dssp TTTCTTCCEEEEESCT
T ss_pred cCCCCCcCEEeCCCCC
Confidence 234577777776665
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.37 E-value=0.00011 Score=65.02 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=59.6
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--c
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--I 215 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i 215 (463)
..+|..+. ++|++|+|.++.+. +..+..+++|+.|+|++..++.- ....+.+++.|+.|+|.++. +..+. +
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~ 99 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNK-ITELPKSL 99 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSC-CCCCCTTT
T ss_pred CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCc-CCccCHhH
Confidence 34665544 58999999988664 34677899999999998765321 12235678999999999875 33332 1
Q ss_pred ccCCCCccEEEEecCC
Q 047476 216 TVPNLRLKRLVIDKCD 231 (463)
Q Consensus 216 ~~~~~~L~~L~i~~c~ 231 (463)
-..+++|+.|.+.++.
T Consensus 100 f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANK 115 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred ccCCCCCCEEECCCCC
Confidence 2345688888888776
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.32 E-value=0.00014 Score=63.53 Aligned_cols=86 Identities=19% Similarity=0.208 Sum_probs=57.5
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~ 216 (463)
.+|..+. ++|++|+|.++.+. +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.- -
T Consensus 21 ~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 96 (208)
T 2o6s_A 21 SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF 96 (208)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred CCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence 4554433 47899999988765 23356789999999988766421 12335678999999998875 333321 2
Q ss_pred cCCCCccEEEEecCC
Q 047476 217 VPNLRLKRLVIDKCD 231 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~ 231 (463)
..+++|+.|.+.++.
T Consensus 97 ~~l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 97 DKLTQLKELALNTNQ 111 (208)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCccCCCEEEcCCCc
Confidence 345688888887775
No 122
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.31 E-value=9.7e-05 Score=72.68 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=36.7
Q ss_pred CCccccccCCchHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476 4 NDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI 43 (463)
Q Consensus 4 ~~~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l 43 (463)
.-..|.|+.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 3457999999999999999999999999999999999863
No 123
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.27 E-value=7.2e-05 Score=73.47 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=35.8
Q ss_pred CccccccCCchH----HHHHHHhcCCchhHHhhhccccchhh
Q 047476 5 DDVDMFSKLTND----LVTVIISYLPFKEAARTSILSRRWRH 42 (463)
Q Consensus 5 ~~~D~is~LPd~----lL~~ILs~Lp~~d~~rts~lSrrWr~ 42 (463)
-..|.|+.||+| |+.+||++|+.+|+++++.|||+|+.
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 457999999999 99999999999999999999999994
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.17 E-value=0.00013 Score=61.99 Aligned_cols=79 Identities=18% Similarity=0.076 Sum_probs=49.4
Q ss_pred CceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee---cccCCCCccEEE
Q 047476 151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD---ITVPNLRLKRLV 226 (463)
Q Consensus 151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---i~~~~~~L~~L~ 226 (463)
++|++|+|+++.+. .+.+..+++|++|+|++..++.- -..++.++|.|+.|++.++. +..+. .-..+++|+.|.
T Consensus 42 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEE
Confidence 37888888877654 24566778888888887765421 11234677888888888775 23222 123355777777
Q ss_pred EecCC
Q 047476 227 IDKCD 231 (463)
Q Consensus 227 i~~c~ 231 (463)
+.+++
T Consensus 120 l~~N~ 124 (176)
T 1a9n_A 120 ILRNP 124 (176)
T ss_dssp CCSSG
T ss_pred ecCCC
Confidence 77665
No 125
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.12 E-value=0.0033 Score=64.57 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=82.8
Q ss_pred CCCeEEEEeecCCCCCCCCCCCCccceeCCc-CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHH
Q 047476 115 RDVKELALDFHDPLWPEHGSENHEAVFDLPM-HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIR 190 (463)
Q Consensus 115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~ 190 (463)
..+++|+|.... ...+|. .+.++++|++|+|++|.+. +..|.++++|++|+|++..++.-. .
T Consensus 52 ~~~~~LdLs~N~-------------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~ 117 (635)
T 4g8a_A 52 FSTKNLDLSFNP-------------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-L 117 (635)
T ss_dssp TTCCEEECTTSC-------------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-G
T ss_pred cCCCEEEeeCCC-------------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-H
Confidence 457777775321 224554 4567889999999998654 456788999999999987653211 1
Q ss_pred HHHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCce---eEEEECCCceEEEEeccc
Q 047476 191 ELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQY---RYEIAAPNLRFWKYSGTE 253 (463)
Q Consensus 191 ~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~---~~~i~aP~L~~l~~~g~~ 253 (463)
..+.+++.|+.|++.++. +..+. .-..+++|+.|.+.++.+... ...-..++|++|.+++..
T Consensus 118 ~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 246789999999999885 33332 124467999999998864211 111125788888887653
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.05 E-value=0.00036 Score=61.65 Aligned_cols=85 Identities=18% Similarity=0.096 Sum_probs=60.8
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL 220 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~ 220 (463)
.+..+++|++|+|+++.+. +..+.++++|++|+|++..++.- -..++.+++.|+.|.|.++. +..+. .-..++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLH 128 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCC
Confidence 4456789999999988654 56788899999999998876421 12335688999999999875 33331 123356
Q ss_pred CccEEEEecCCC
Q 047476 221 RLKRLVIDKCDF 232 (463)
Q Consensus 221 ~L~~L~i~~c~~ 232 (463)
+|+.|.+.++.+
T Consensus 129 ~L~~L~L~~N~l 140 (220)
T 2v9t_B 129 NLNLLSLYDNKL 140 (220)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCcC
Confidence 888888887763
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.99 E-value=0.00019 Score=73.10 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=27.4
Q ss_pred ccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEEecCC
Q 047476 173 ALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVIDKCD 231 (463)
Q Consensus 173 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i~~c~ 231 (463)
.|+.|+|++..++. +.. +.+++.|+.|++.++. +..+. .-..+++|+.|.++++.
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC
Confidence 36666666655432 222 5566666666666654 22221 11223455555555544
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.90 E-value=0.00022 Score=60.58 Aligned_cols=82 Identities=11% Similarity=0.078 Sum_probs=56.9
Q ss_pred ccCCCceeEEEeeeeeeCC-CCCCCC-CccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCc
Q 047476 147 VYGHVGLESLELFSCNINA-SRFNNF-IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRL 222 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~~-~~~~~l-~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L 222 (463)
...+.+|++|.|+++.+.. +.+..+ ++|+.|+|++..++.- .-+.+++.|+.|++.++. +..+. +...+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 3456789999999987752 344444 4899999998876432 345678899999998876 44332 12345688
Q ss_pred cEEEEecCCC
Q 047476 223 KRLVIDKCDF 232 (463)
Q Consensus 223 ~~L~i~~c~~ 232 (463)
+.|.++++.+
T Consensus 91 ~~L~L~~N~i 100 (176)
T 1a9n_A 91 TELILTNNSL 100 (176)
T ss_dssp CEEECCSCCC
T ss_pred CEEECCCCcC
Confidence 8888887763
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.90 E-value=0.0004 Score=61.76 Aligned_cols=86 Identities=22% Similarity=0.178 Sum_probs=60.4
Q ss_pred CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCC
Q 047476 144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPN 219 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~ 219 (463)
|..+..+++|++|+|+++.+. +..+..+++|+.|+|++..++.- ....+.+++.|+.|.+.++. +..+. -...+
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 134 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNK-LTELPRGIERL 134 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCSCCTTGGGC
T ss_pred HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCc-ccccCcccccC
Confidence 444567789999999998764 23457899999999998876421 12335688999999999876 33331 11345
Q ss_pred CCccEEEEecCC
Q 047476 220 LRLKRLVIDKCD 231 (463)
Q Consensus 220 ~~L~~L~i~~c~ 231 (463)
++|+.|.+.++.
T Consensus 135 ~~L~~L~L~~N~ 146 (229)
T 3e6j_A 135 THLTHLALDQNQ 146 (229)
T ss_dssp TTCSEEECCSSC
T ss_pred CCCCEEECCCCc
Confidence 688888887775
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.89 E-value=1.3e-05 Score=69.88 Aligned_cols=82 Identities=22% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEEecCCCCceeEEEECCCce
Q 047476 167 RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVIDKCDFNQYRYEIAAPNLR 245 (463)
Q Consensus 167 ~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~ 245 (463)
.+..+++|++|+|++..++. +. .+.+++.|+.|++.++. +..+. ....+++|+.|.+.+|.+..-.-.-..++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCCccccCCCCC
Confidence 34578899999999888754 33 56778999999999875 23221 1222358888888887632100001235566
Q ss_pred EEEEecc
Q 047476 246 FWKYSGT 252 (463)
Q Consensus 246 ~l~~~g~ 252 (463)
.|.++++
T Consensus 119 ~L~l~~N 125 (198)
T 1ds9_A 119 VLYMSNN 125 (198)
T ss_dssp EEEESEE
T ss_pred EEECCCC
Confidence 6665554
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.89 E-value=0.00045 Score=60.33 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=56.6
Q ss_pred ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCC
Q 047476 147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLR 221 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~ 221 (463)
+..+++|++|+|+++.+. +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.- -..+++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCc
Confidence 346788999999988764 22356789999999988766421 12235678999999998875 333321 233568
Q ss_pred ccEEEEecCC
Q 047476 222 LKRLVIDKCD 231 (463)
Q Consensus 222 L~~L~i~~c~ 231 (463)
|+.|.+.++.
T Consensus 126 L~~L~l~~N~ 135 (208)
T 2o6s_A 126 LKDLRLYQNQ 135 (208)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888888775
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.81 E-value=0.00051 Score=69.92 Aligned_cols=85 Identities=16% Similarity=0.076 Sum_probs=56.7
Q ss_pred eCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---ecc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DIT 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~ 216 (463)
.+|. +..+++|+.|+|+++.+. |..+..+++|+.|+|++..++. +. -+.+++.|+.|+|.++. +..+ ..-
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l 529 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPL 529 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGG
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHH
Confidence 3564 667778888888887765 3456678888888888876643 33 46778888888888775 2322 122
Q ss_pred cCCCCccEEEEecCC
Q 047476 217 VPNLRLKRLVIDKCD 231 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~ 231 (463)
..+++|+.|.++++.
T Consensus 530 ~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 530 VSCPRLVLLNLQGNS 544 (567)
T ss_dssp GGCTTCCEEECTTSG
T ss_pred hcCCCCCEEEecCCc
Confidence 335577777777665
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.78 E-value=0.00098 Score=56.47 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=57.7
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~ 216 (463)
.+|..+. ++|++|.|.++.+. +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.- -
T Consensus 21 ~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 96 (177)
T 2o6r_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVF 96 (177)
T ss_dssp SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHh
Confidence 4554433 58899999988764 23456789999999998766421 12235678999999998875 333221 2
Q ss_pred cCCCCccEEEEecCCC
Q 047476 217 VPNLRLKRLVIDKCDF 232 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~~ 232 (463)
..+++|+.|.+.++.+
T Consensus 97 ~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 97 DKLTQLKELALDTNQL 112 (177)
T ss_dssp TTCTTCCEEECCSSCC
T ss_pred hCCcccCEEECcCCcc
Confidence 3356888888877763
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.78 E-value=0.00062 Score=60.15 Aligned_cols=86 Identities=14% Similarity=0.163 Sum_probs=50.6
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---C-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--c
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---A-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--I 215 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i 215 (463)
.+|..+. ..+++|+|+++.+. + ..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+. .
T Consensus 25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 100 (220)
T 2v70_A 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR-LENVQHKM 100 (220)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGGG
T ss_pred cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHhH
Confidence 4555443 35678888887654 2 23567888888888876553211 1234677888888888765 22221 1
Q ss_pred ccCCCCccEEEEecCC
Q 047476 216 TVPNLRLKRLVIDKCD 231 (463)
Q Consensus 216 ~~~~~~L~~L~i~~c~ 231 (463)
-..+++|+.|.++++.
T Consensus 101 ~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 101 FKGLESLKTLMLRSNR 116 (220)
T ss_dssp GTTCSSCCEEECTTSC
T ss_pred hcCCcCCCEEECCCCc
Confidence 2234566666666554
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.75 E-value=0.00032 Score=67.38 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=43.5
Q ss_pred CceeEEEeeeeeeCCC---CC-CCCCccceEEeccEeechhHHHH---HH-hcCCCceEEeecccCCCceee---cc---
Q 047476 151 VGLESLELFSCNINAS---RF-NNFIALKELSLGWIQLSVQSIRE---LL-VQCPFLESLSLKKCWEIEYLD---IT--- 216 (463)
Q Consensus 151 ~~L~~L~L~~~~~~~~---~~-~~l~~L~~L~L~~~~~~~~~l~~---ll-s~cp~Le~L~l~~c~~~~~~~---i~--- 216 (463)
.+|++|+|++|.+... .+ ..+++|+.|+|+++.+++.+... .+ ..++.|++|+|.+|. ++... +.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHH
Confidence 4677777777665421 11 13566777777777665544333 23 346777777777764 32211 10
Q ss_pred cCCCCccEEEEecCC
Q 047476 217 VPNLRLKRLVIDKCD 231 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~ 231 (463)
..+++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG 194 (372)
T ss_dssp HTCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCC
Confidence 223456666666554
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.72 E-value=0.00082 Score=58.02 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=52.6
Q ss_pred eCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--ccc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITV 217 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~ 217 (463)
.+|..++ ++|++|.|+++.+. +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+. .-.
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~ 99 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTFD 99 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTTT
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHhC
Confidence 4554433 47888888877664 345567788888888877653211 1234577888888888765 33322 122
Q ss_pred CCCCccEEEEecCC
Q 047476 218 PNLRLKRLVIDKCD 231 (463)
Q Consensus 218 ~~~~L~~L~i~~c~ 231 (463)
.+++|+.|.+.++.
T Consensus 100 ~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 100 GLKSLRLLSLHGND 113 (193)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCC
Confidence 34577777777665
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.72 E-value=0.0017 Score=61.96 Aligned_cols=81 Identities=23% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCcc
Q 047476 149 GHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLK 223 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~ 223 (463)
.+++|++|+|+++.+. +..+..+++|+.|+|++..++.- ....+.+++.|+.|+|.++. +..+. .-..+++|+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCC
Confidence 4456666666655442 23455566666666665543210 01123455666666666554 22221 112234566
Q ss_pred EEEEecCC
Q 047476 224 RLVIDKCD 231 (463)
Q Consensus 224 ~L~i~~c~ 231 (463)
.|.+.++.
T Consensus 140 ~L~L~~N~ 147 (361)
T 2xot_A 140 KLYLSQNQ 147 (361)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66665554
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.70 E-value=0.00076 Score=59.56 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=60.4
Q ss_pred ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCC
Q 047476 147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLR 221 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~ 221 (463)
+..+++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+++.|+.|.+.++. +..+. .-..+++
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCc-CCeECHhHcCCCcc
Confidence 456789999999998764 446788999999999988763211 2245789999999999886 33321 1233568
Q ss_pred ccEEEEecCC
Q 047476 222 LKRLVIDKCD 231 (463)
Q Consensus 222 L~~L~i~~c~ 231 (463)
|+.|.+.++.
T Consensus 131 L~~L~L~~N~ 140 (220)
T 2v70_A 131 VRLLSLYDNQ 140 (220)
T ss_dssp CSEEECTTSC
T ss_pred CCEEECCCCc
Confidence 8888888776
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.68 E-value=0.0012 Score=56.85 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=58.2
Q ss_pred eCCcCccCCCceeEEEeeeeeeC--CC--CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN--AS--RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI-- 215 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i-- 215 (463)
.+|..++. +|++|.|.++.+. ++ .+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+..
T Consensus 22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 97 (192)
T 1w8a_A 22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEISNKM 97 (192)
T ss_dssp SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEECSSS
T ss_pred cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc-CCccCHHH
Confidence 46655443 8999999988764 22 266899999999998866421 12335678999999999876 333321
Q ss_pred ccCCCCccEEEEecCC
Q 047476 216 TVPNLRLKRLVIDKCD 231 (463)
Q Consensus 216 ~~~~~~L~~L~i~~c~ 231 (463)
-..+++|+.|.+.++.
T Consensus 98 ~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp STTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCc
Confidence 2335678888887776
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.63 E-value=0.0056 Score=57.52 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=54.0
Q ss_pred CCCceEEEEeccc-ce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce-EEEEeccccccccCCCCCC
Q 047476 241 APNLRFWKYSGTE-GM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR-VLTVCSFLLQVIPHAEEPF 315 (463)
Q Consensus 241 aP~L~~l~~~g~~-~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~-~L~l~~~~~~~~~~~~~~~ 315 (463)
+++|+++.+.+.. .. ..+.++++|+++.+.-.... .. ...+.++++++ .+.+.. .++.+....
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~-I~-------~~aF~~~~~L~~~l~l~~-~l~~I~~~a--- 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT-IG-------QRVFSNCGRLAGTLELPA-SVTAIEFGA--- 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE-EC-------TTTTTTCTTCCEEEEECT-TCCEECTTT---
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce-eh-------HHHhhCChhccEEEEEcc-cceEEchhh---
Confidence 5788888887642 22 23566778888877521100 00 02356788888 898865 343333211
Q ss_pred CCCCCC-ceeEEEEecCCCCchhhHH-HHhhhcCCCcceEEE
Q 047476 316 GMTVPL-EVKHLTLNAGMHPHEYYGI-NFMLKSCPSLQTLTI 355 (463)
Q Consensus 316 ~~~~~~-~L~~L~l~~~~~~~~~~~l-~~lL~~~P~L~~L~l 355 (463)
|... +|+.+.+...- +..+ ...+..|++|++++.
T Consensus 293 --F~~c~~L~~l~l~~n~----i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 293 --FMGCDNLRYVLATGDK----ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp --TTTCTTEEEEEECSSC----CCEECTTTTCTTCCCCEEEC
T ss_pred --hhCCccCCEEEeCCCc----cCccchhhhcCCcchhhhcc
Confidence 1111 68888874221 1111 124678999998863
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.61 E-value=0.0027 Score=54.64 Aligned_cols=88 Identities=20% Similarity=0.135 Sum_probs=62.3
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~ 216 (463)
.+|..+..+++|++|+|+++.+. +..+.++++|++|+|++..++.-. ...+.+++.|+.|+|.++. +..+.. -
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N~-l~~~~~~~~ 122 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGND-ISVVPEGAF 122 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCCCC-CCeeChhhh
Confidence 56666778889999999999765 345788999999999988764211 1235688999999999876 333321 2
Q ss_pred cCCCCccEEEEecCC
Q 047476 217 VPNLRLKRLVIDKCD 231 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~ 231 (463)
..+++|+.|.+.+.+
T Consensus 123 ~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 123 NDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCccccEEEeCCCC
Confidence 234567777666554
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.45 E-value=0.00075 Score=70.90 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=54.6
Q ss_pred eCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccC
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVP 218 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~ 218 (463)
.+|..++.+++|++|+|+++.+. |..+..+++|+.|+|++..++ .+..-+.+++.|+.|.|.++. ++.+. --..
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~ 314 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGN 314 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTS
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCC-CCccChhhhc
Confidence 56666667777777777777654 334556777777777776654 233335667777777777764 33321 1223
Q ss_pred CCCccEEEEecCCC
Q 047476 219 NLRLKRLVIDKCDF 232 (463)
Q Consensus 219 ~~~L~~L~i~~c~~ 232 (463)
+++|+.|.+.++.+
T Consensus 315 l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 315 LCNLQFLGVEGNPL 328 (727)
T ss_dssp CTTCCCEECTTSCC
T ss_pred CCCccEEeCCCCcc
Confidence 55777777776654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.45 E-value=0.0029 Score=53.24 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=57.2
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cc
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--IT 216 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~ 216 (463)
.+|..+. ++|++|+|+++.+. +..+..+++|++|+|++..++.- -...+.+++.|+.|+|.+.. +..+. .-
T Consensus 23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~ 98 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRGAF 98 (170)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHHHh
Confidence 4665543 68999999988764 34577899999999998876421 12235678899999998875 33332 12
Q ss_pred cCCCCccEEEEecCC
Q 047476 217 VPNLRLKRLVIDKCD 231 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~ 231 (463)
..+++|+.|.+.+.+
T Consensus 99 ~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 99 DNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEEeCCCC
Confidence 234567777666654
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.44 E-value=0.0029 Score=53.44 Aligned_cols=87 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI-- 215 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i-- 215 (463)
..+|..+. ++|++|+|+++.+. +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.+.. +..+.-
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~ 100 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPRGA 100 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc-cceeCHHH
Confidence 34665554 68899999988764 345678899999999887664210 1234678888888888764 333221
Q ss_pred ccCCCCccEEEEecCC
Q 047476 216 TVPNLRLKRLVIDKCD 231 (463)
Q Consensus 216 ~~~~~~L~~L~i~~c~ 231 (463)
-..+++|+.|.+.+++
T Consensus 101 ~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTCTTCSEEECCSSC
T ss_pred hccccCCCEEEeCCCC
Confidence 2234466666666554
No 145
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.42 E-value=0.0036 Score=59.76 Aligned_cols=106 Identities=21% Similarity=0.172 Sum_probs=70.5
Q ss_pred eeCCcCccCCCceeEEEeeeeeeC---CCCCC-CCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476 141 FDLPMHVYGHVGLESLELFSCNIN---ASRFN-NFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-- 214 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~-~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-- 214 (463)
..+|..+. ..++.|+|+++.+. +..+. .+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+.
T Consensus 31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 106 (361)
T 2xot_A 31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEF 106 (361)
T ss_dssp SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHH
Confidence 34666544 36899999998764 34455 8999999999987664211 1235688999999999876 44442
Q ss_pred cccCCCCccEEEEecCCCCceeEE----EECCCceEEEEecc
Q 047476 215 ITVPNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGT 252 (463)
Q Consensus 215 i~~~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~ 252 (463)
.-..+++|+.|.+.++.+ ..+. -..++|+.|.++++
T Consensus 107 ~~~~l~~L~~L~L~~N~i--~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp TTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSS
T ss_pred HhCCCcCCCEEECCCCcc--cEECHHHhCCcccCCEEECCCC
Confidence 223467899999988863 2221 12466777766654
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.36 E-value=0.00061 Score=71.58 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=69.4
Q ss_pred CCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCC
Q 047476 143 LPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPN 219 (463)
Q Consensus 143 lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~ 219 (463)
.|..+..+..|+.|+|+++.+. +..+..+++|++|+|++..++ .+..-+.+++.|+.|+|.++. +..+. --..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 3445566778999999988765 334557899999999988765 333446788999999999886 33331 12345
Q ss_pred CCccEEEEecCCCCceeEE--E-ECCCceEEEEeccc
Q 047476 220 LRLKRLVIDKCDFNQYRYE--I-AAPNLRFWKYSGTE 253 (463)
Q Consensus 220 ~~L~~L~i~~c~~~~~~~~--i-~aP~L~~l~~~g~~ 253 (463)
++|+.|.+.++.+ ..+. + ..++|+.|.++++.
T Consensus 293 ~~L~~L~L~~N~l--~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDNMV--TTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSSCC--CCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCCCC--CccChhhhcCCCccEEeCCCCc
Confidence 6899999988864 2221 1 24677777776653
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.29 E-value=0.0057 Score=52.24 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCceeEEEeeee-eeCCC-------CCCCCCccceEEeccEeechhH---HHHHHhcCCCceEEeecccC
Q 047476 149 GHVGLESLELFSC-NINAS-------RFNNFIALKELSLGWIQLSVQS---IRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 149 ~~~~L~~L~L~~~-~~~~~-------~~~~l~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~c~ 208 (463)
.+++|++|+|++| .+.+. .+...+.|++|+|+++.+++.+ +...+..++.|++|+|.++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 3445555655555 44321 1123455666666666654433 34445556666666666654
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.27 E-value=0.0037 Score=52.83 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=60.1
Q ss_pred CCcC-ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476 143 LPMH-VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T 216 (463)
Q Consensus 143 lp~~-l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~ 216 (463)
+|.. +..+++|++|+|+++.+. +..+..+++|+.|+|++..++.- ....+.+++.|+.|++.++. +..+.. -
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 120 (177)
T 2o6r_A 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKELALDTNQ-LKSVPDGIF 120 (177)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCEEECcCCc-ceEeCHHHh
Confidence 4443 346789999999998775 23457899999999998876421 12245688999999999875 343321 2
Q ss_pred cCCCCccEEEEecCC
Q 047476 217 VPNLRLKRLVIDKCD 231 (463)
Q Consensus 217 ~~~~~L~~L~i~~c~ 231 (463)
..+++|+.|.+.+++
T Consensus 121 ~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCcccCEEEecCCC
Confidence 334577777777665
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.22 E-value=0.0044 Score=53.21 Aligned_cols=83 Identities=19% Similarity=0.128 Sum_probs=58.5
Q ss_pred ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCC
Q 047476 147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLR 221 (463)
Q Consensus 147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~ 221 (463)
+...++|++|+|+++.+. +..+..+++|++|+|++..++.-. ...+.+.+.|+.|++.++. +..+. .-..+++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 127 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNS 127 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTT
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCC
Confidence 556789999999999764 456788999999999998764311 1235678999999999886 33321 1223456
Q ss_pred ccEEEEecCC
Q 047476 222 LKRLVIDKCD 231 (463)
Q Consensus 222 L~~L~i~~c~ 231 (463)
|+.|.+.+++
T Consensus 128 L~~L~L~~N~ 137 (192)
T 1w8a_A 128 LTSLNLASNP 137 (192)
T ss_dssp CCEEECTTCC
T ss_pred CCEEEeCCCC
Confidence 7777776655
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.51 E-value=0.009 Score=56.46 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=61.9
Q ss_pred eeCCcCccCCCceeEEEeee-eeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec-
Q 047476 141 FDLPMHVYGHVGLESLELFS-CNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI- 215 (463)
Q Consensus 141 ~~lp~~l~~~~~L~~L~L~~-~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i- 215 (463)
..+|. +....+|++|+|++ +.+. +..+.++++|+.|+|++..++.- ....+.+++.|+.|+|.+.. +..+.-
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~ 98 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA-LESLSWK 98 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence 35787 77888999999986 7654 34678899999999998876431 12245789999999999875 333321
Q ss_pred ccCCCCccEEEEecCCC
Q 047476 216 TVPNLRLKRLVIDKCDF 232 (463)
Q Consensus 216 ~~~~~~L~~L~i~~c~~ 232 (463)
......|+.|.+.++.+
T Consensus 99 ~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPL 115 (347)
T ss_dssp TTCSCCCCEEECCSSCC
T ss_pred HcccCCceEEEeeCCCc
Confidence 11112488888876653
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.28 E-value=0.0097 Score=50.75 Aligned_cols=82 Identities=13% Similarity=0.028 Sum_probs=40.8
Q ss_pred CCCceeEEEeeeeeeCCCC-------CCCCCccceEEeccEeechhH---HHHHHhcCCCceEEee--cccCCCceee--
Q 047476 149 GHVGLESLELFSCNINASR-------FNNFIALKELSLGWIQLSVQS---IRELLVQCPFLESLSL--KKCWEIEYLD-- 214 (463)
Q Consensus 149 ~~~~L~~L~L~~~~~~~~~-------~~~l~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l--~~c~~~~~~~-- 214 (463)
.+++|++|+|++|.+.... +...+.|++|+|++..+++.+ +...+..++.|+.|+| .++. ++...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~ 141 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEM 141 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHH
Confidence 3455666666666554221 113455666666666665544 3333445666666666 3332 22211
Q ss_pred ----cccCCCCccEEEEecCC
Q 047476 215 ----ITVPNLRLKRLVIDKCD 231 (463)
Q Consensus 215 ----i~~~~~~L~~L~i~~c~ 231 (463)
.-...++|++|.+.+|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeccCCC
Confidence 11123466666666654
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.98 E-value=0.032 Score=52.26 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=50.3
Q ss_pred CCCccEEEEecCCCCceeEE----EECCCceEEEEeccccee---eeecCCCcc-EEEEeeecCCCCchhHHHHHHHHhh
Q 047476 219 NLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGMF---RVERQNFLT-EVELDFALQPDFDEEIGEFLYELLR 290 (463)
Q Consensus 219 ~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~~---~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~ll~ 290 (463)
+++|+.|++.++. ...+. -.+++|+++.+.+....+ .+.++++|+ .+.+.-.... .. ...+.
T Consensus 225 ~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~~-I~-------~~aF~ 294 (329)
T 3sb4_A 225 MPNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTA-IE-------FGAFM 294 (329)
T ss_dssp CTTCCEEECTTBC--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCCE-EC-------TTTTT
T ss_pred cCCCeEEECCCCC--cceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccceE-Ec-------hhhhh
Confidence 5688888887654 22332 125788888877653332 356778888 8877531110 00 02356
Q ss_pred cCccceEEEEeccccccccC
Q 047476 291 QLEIVRVLTVCSFLLQVIPH 310 (463)
Q Consensus 291 ~l~~l~~L~l~~~~~~~~~~ 310 (463)
+|++++.+.+.+..++.++.
T Consensus 295 ~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 295 GCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp TCTTEEEEEECSSCCCEECT
T ss_pred CCccCCEEEeCCCccCccch
Confidence 79999999997766665543
No 153
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.96 E-value=0.025 Score=53.55 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=70.4
Q ss_pred ceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476 140 VFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-- 214 (463)
Q Consensus 140 ~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-- 214 (463)
...+|..+. +++++|+|+++.+. +..|.++++|++|+|++..+...-=...+.+++.|.++.+..+..+..+.
T Consensus 21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 345776553 57999999998764 34678999999999998754211001235678888887777776666653
Q ss_pred cccCCCCccEEEEecCCCCc--eeEEEECCCceEEEEec
Q 047476 215 ITVPNLRLKRLVIDKCDFNQ--YRYEIAAPNLRFWKYSG 251 (463)
Q Consensus 215 i~~~~~~L~~L~i~~c~~~~--~~~~i~aP~L~~l~~~g 251 (463)
.-..+++|+.|.+.++.... ........++..+.+.+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence 23446689999998876311 01112344555666554
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.23 E-value=0.19 Score=48.43 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=8.2
Q ss_pred hhcCCCcceEEE
Q 047476 344 LKSCPSLQTLTI 355 (463)
Q Consensus 344 L~~~P~L~~L~l 355 (463)
+..|++|+++.|
T Consensus 319 F~~c~~L~~l~l 330 (401)
T 4fdw_A 319 LGGNRKVTQLTI 330 (401)
T ss_dssp TTTCCSCCEEEE
T ss_pred hcCCCCccEEEE
Confidence 456777777776
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=92.92 E-value=0.05 Score=45.66 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=47.6
Q ss_pred CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
|..+...++|+.|+|+++.+. +..+..+++|+.|+|++..++.- -...+.+++.|+.|.+.+..
T Consensus 50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCCC
Confidence 445567789999999999775 23357899999999998776421 11236678999999999764
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=92.48 E-value=0.063 Score=44.83 Aligned_cols=64 Identities=23% Similarity=0.158 Sum_probs=46.4
Q ss_pred CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
|..+...++|++|+|+++.+. +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.+..
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 444556789999999998764 234578999999999987664211 1235678999999998754
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=89.41 E-value=0.19 Score=45.25 Aligned_cols=59 Identities=22% Similarity=0.197 Sum_probs=29.6
Q ss_pred hcCCCceEEeecccCCCceee-c---ccCCCCccEEEEecCCCCce-eE-EEECCCceEEEEeccc
Q 047476 194 VQCPFLESLSLKKCWEIEYLD-I---TVPNLRLKRLVIDKCDFNQY-RY-EIAAPNLRFWKYSGTE 253 (463)
Q Consensus 194 s~cp~Le~L~l~~c~~~~~~~-i---~~~~~~L~~L~i~~c~~~~~-~~-~i~aP~L~~l~~~g~~ 253 (463)
.++|.|+.|+|.+.. +..+. + ...+++|+.|.+++..+... .+ .+...+|++|.+.|+.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCc
Confidence 466777777777654 22221 1 12355777777766553110 00 0111267777777654
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=87.78 E-value=1.2 Score=42.67 Aligned_cols=17 Identities=18% Similarity=0.047 Sum_probs=8.1
Q ss_pred CCCCCCCCccceEEecc
Q 047476 165 ASRFNNFIALKELSLGW 181 (463)
Q Consensus 165 ~~~~~~l~~L~~L~L~~ 181 (463)
...|.+|++|+++.+.+
T Consensus 264 ~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYG 280 (401)
T ss_dssp TTTTTTCTTCCEEEEES
T ss_pred hhHhhCCCCCCEEEeCC
Confidence 33444455555555543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=87.45 E-value=0.18 Score=45.46 Aligned_cols=57 Identities=23% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCceeEEEeeeeeeCC-C----CCCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccC
Q 047476 150 HVGLESLELFSCNINA-S----RFNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 150 ~~~L~~L~L~~~~~~~-~----~~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~ 208 (463)
+++|++|+|+++.+.. + .+..+++|+.|+|++..++. ..+.. +.+. .|++|.|.+..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS 231 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence 4566777776665542 1 11256777777777666532 23322 2223 67777776654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=81.87 E-value=0.44 Score=44.59 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=39.4
Q ss_pred CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476 146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW 208 (463)
Q Consensus 146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~ 208 (463)
.+..+++|+.|+|+++.+. +..|.++++|+.|+|++..++.-. ..++...+ |+.|.|.+..
T Consensus 51 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSSC
T ss_pred HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCCC
Confidence 4556778888888888654 345677888888888887653210 11222333 8888888653
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=78.36 E-value=1.8 Score=41.32 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=60.8
Q ss_pred cCCCceeEEEeeeeeeCCCCCCCCCccceEEecc-Ee-echhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCCcc
Q 047476 148 YGHVGLESLELFSCNINASRFNNFIALKELSLGW-IQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLRLK 223 (463)
Q Consensus 148 ~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~-~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~L~ 223 (463)
..|..++.+.+....+....+..+.+|+.+.+.. +. +++.. +.+|..|+++.|-.- +..+.- -..|.+|+
T Consensus 273 ~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYL--VEEIGKRSFRGCTSLS 346 (394)
T ss_dssp TTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTTTTCTTCC
T ss_pred ccccccceeccCceeeccccccccccccccccccccceechhh----hcCCCCCCEEEeCCc--ccEEhHHhccCCCCCC
Confidence 3566777777666556556667778888887753 22 33333 467888888877431 222221 12345677
Q ss_pred EEEEecCCCCceeEE----EECCCceEEEEecccce--eeeecCCCccEE
Q 047476 224 RLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM--FRVERQNFLTEV 267 (463)
Q Consensus 224 ~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l 267 (463)
.+.+... ...+. -.+++|+++.+...... ..+.++++|+.+
T Consensus 347 ~i~lp~~---l~~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 347 NINFPLS---LRKIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT---CCEECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred EEEECcc---ccEehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 7666322 12221 13567777777554322 234556666543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=75.68 E-value=4.5 Score=38.41 Aligned_cols=101 Identities=20% Similarity=0.210 Sum_probs=63.5
Q ss_pred ccCCCceeEEEeeee--eeCCCCCCCCCccceEEecc-E-eechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476 147 VYGHVGLESLELFSC--NINASRFNNFIALKELSLGW-I-QLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL 220 (463)
Q Consensus 147 l~~~~~L~~L~L~~~--~~~~~~~~~l~~L~~L~L~~-~-~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~ 220 (463)
+..|..|+.+.+... .+....+.+++.|+.+.+.. + .+.+.. +.+|..|+++.|-.- +..+. .-..|.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 456788999988643 34556777899999999864 2 244443 578999999998642 33332 112366
Q ss_pred CccEEEEecCCCCce-eEEEECCCceEEEEeccc
Q 047476 221 RLKRLVIDKCDFNQY-RYEIAAPNLRFWKYSGTE 253 (463)
Q Consensus 221 ~L~~L~i~~c~~~~~-~~~i~aP~L~~l~~~g~~ 253 (463)
+|+++.+-..--... ...-.+++|+++.+.+..
T Consensus 335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence 888888843210111 111247889998887753
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=74.58 E-value=3.4 Score=35.09 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=15.9
Q ss_pred hHHHHhhhcCCCcceEEEE
Q 047476 338 YGINFMLKSCPSLQTLTIN 356 (463)
Q Consensus 338 ~~l~~lL~~~P~L~~L~l~ 356 (463)
..+...|+.-+.|++|.++
T Consensus 147 ~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHhCCCcCeEecc
Confidence 4688889999999998874
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=73.57 E-value=2.7 Score=39.94 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=73.3
Q ss_pred ceeEEEeeee--eeCCCCCCCCCccceEEeccE--eechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEE
Q 047476 152 GLESLELFSC--NINASRFNNFIALKELSLGWI--QLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRL 225 (463)
Q Consensus 152 ~L~~L~L~~~--~~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L 225 (463)
.+..+.+... .+....|.++..|+++.+... .+.... +.+|+.|+.+.+..- +..+. .-..|.+|+.+
T Consensus 243 ~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i 316 (394)
T 4gt6_A 243 EDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSR--ITELPESVFAGCISLKSI 316 (394)
T ss_dssp CCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred ccceEEcCCcceEcccceeeecccccEEecccccceecCcc----cccccccccccCCCc--ccccCceeecCCCCcCEE
Confidence 4444444322 234556788999999998643 234333 468999999998632 33322 12336688888
Q ss_pred EEecCCCCceeEE----EECCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEE
Q 047476 226 VIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVL 298 (463)
Q Consensus 226 ~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L 298 (463)
.+... ...+. -.+.+|+++.+...... ..+.++++|+.+.+.-. . ....-...+.+++.+
T Consensus 317 ~lp~~---v~~I~~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~---------~-~~~~~~~~~~~L~~i 383 (394)
T 4gt6_A 317 DIPEG---ITQILDDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGS---------R-SQWNAISTDSGLQNL 383 (394)
T ss_dssp ECCTT---CCEECTTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSC---------H-HHHHTCBCCCCC---
T ss_pred EeCCc---ccEehHhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCc---------e-eehhhhhccCCCCEE
Confidence 87431 22221 13578888887544322 34667899999887621 1 111234567888888
Q ss_pred EEec
Q 047476 299 TVCS 302 (463)
Q Consensus 299 ~l~~ 302 (463)
.+..
T Consensus 384 ~i~~ 387 (394)
T 4gt6_A 384 PVAP 387 (394)
T ss_dssp ----
T ss_pred EeCC
Confidence 8754
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=71.49 E-value=2.3 Score=36.17 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=9.2
Q ss_pred HHHHHHHHHhC--CCeEEEE
Q 047476 105 VQNCISFAIAR--DVKELAL 122 (463)
Q Consensus 105 i~~wl~~~~~~--~v~~L~l 122 (463)
++..+..+... .+++|.+
T Consensus 29 v~~~l~~ll~~n~~L~~L~L 48 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNI 48 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccEEEC
Confidence 56666665443 3444444
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=65.68 E-value=10 Score=35.80 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=19.1
Q ss_pred ccCCCceeEEEeeee--eeCCCCCCCCCccceEEecc
Q 047476 147 VYGHVGLESLELFSC--NINASRFNNFIALKELSLGW 181 (463)
Q Consensus 147 l~~~~~L~~L~L~~~--~~~~~~~~~l~~L~~L~L~~ 181 (463)
.+.+.+|+.+.+... .+....+.++..|+.+.+..
T Consensus 226 ~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 226 ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECC
T ss_pred hcccCCCceEEECCCceecccccccccccceeEEcCC
Confidence 345556777666432 23334455666666666653
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=50.54 E-value=11 Score=29.30 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=29.3
Q ss_pred eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEee
Q 047476 142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQL 184 (463)
Q Consensus 142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~ 184 (463)
.+|..+. .+|++|+|+++.+. ...|..+++|++|.|.+..+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4554332 36899999998764 34556788999999988654
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=48.36 E-value=16 Score=34.20 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=47.3
Q ss_pred ccCCCceeEEEeeee--eeCCCCCCCCCccceEEeccE-e-echhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476 147 VYGHVGLESLELFSC--NINASRFNNFIALKELSLGWI-Q-LSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL 220 (463)
Q Consensus 147 l~~~~~L~~L~L~~~--~~~~~~~~~l~~L~~L~L~~~-~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~ 220 (463)
+..|..|+.+.+... .+....+.++.+|+.+.+..- . +... .+.+|+.|+.+.+.+.. +..+. .-..|.
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~----aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYL----LCSGCSNLTKVVMDNSA-IETLEPRVFMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTT----TTTTCTTCCEEEECCTT-CCEECTTTTTTCT
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccceecccc----ccccccccccccccccc-cceehhhhhcCCC
Confidence 356778888888643 344556777888888888642 1 2322 34688899988886542 22222 112355
Q ss_pred CccEEEEe
Q 047476 221 RLKRLVID 228 (463)
Q Consensus 221 ~L~~L~i~ 228 (463)
+|+++.+.
T Consensus 311 ~L~~i~lp 318 (379)
T 4h09_A 311 KLSSVTLP 318 (379)
T ss_dssp TCCEEECC
T ss_pred CCCEEEcC
Confidence 77777763
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=44.29 E-value=14 Score=34.63 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=47.8
Q ss_pred cCCCceeEEEeeee--eeCCCCCCCCCccceEEecc--Ee-echhHHHHHHhcCCCceEEeecccCCCceeec--ccCCC
Q 047476 148 YGHVGLESLELFSC--NINASRFNNFIALKELSLGW--IQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNL 220 (463)
Q Consensus 148 ~~~~~L~~L~L~~~--~~~~~~~~~l~~L~~L~L~~--~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~ 220 (463)
..|.+|+.+.+... .+....|.+|++|+++.+.. +. +.+.. +.+|..|+++.|-. .+..+.- -..|.
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 333 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPT--ALKTIQVYAFKNCK 333 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCT--TCCEECTTTTTTCT
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehhhh----hcCCCCCCEEEcCc--cccEEHHHHhhCCC
Confidence 45778999988653 34456778899999999964 32 44444 47899999999853 2333321 12345
Q ss_pred CccEEEE
Q 047476 221 RLKRLVI 227 (463)
Q Consensus 221 ~L~~L~i 227 (463)
+|+.+.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 6666654
No 170
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=34.79 E-value=31 Score=21.12 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=15.8
Q ss_pred CCccccccCCchHHHHHHHhc
Q 047476 4 NDDVDMFSKLTNDLVTVIISY 24 (463)
Q Consensus 4 ~~~~D~is~LPd~lL~~ILs~ 24 (463)
+-+.+-|+.||.||-..|||-
T Consensus 15 ~VD~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 15 GVDQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp TCCGGGTTTSCHHHHHHHTTC
T ss_pred CCCHHHHHHCcHHHHHHHHhc
Confidence 345566888888888888875
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.37 E-value=49 Score=24.25 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=13.2
Q ss_pred CCCceeEEEeeee--eeCCCCCCCCCccceEEec
Q 047476 149 GHVGLESLELFSC--NINASRFNNFIALKELSLG 180 (463)
Q Consensus 149 ~~~~L~~L~L~~~--~~~~~~~~~l~~L~~L~L~ 180 (463)
+|.+|+++.|... .+....|.+|.+|+++.+.
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEEC
T ss_pred CCCCCcEEEcCCchheEcHHHHhccCCccEEEEc
Confidence 3455555554322 1222334444444444443
Done!