BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047479
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29602|CPC_CUCSA Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3
Length = 137
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 23 ATTYTVGDNAGWTTQGKVDYYS-WVDGKEFKVGDTL 57
+T + VGDN GW+ ++YS W GK F+VGD+L
Sbjct: 2 STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSL 37
>sp|Q41001|BCP_PEA Blue copper protein OS=Pisum sativum PE=2 SV=1
Length = 189
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 7 AVISLTIMALFGASVAATTYTVGDNAGWTTQGKVDYYSWVDGKEFKVGDTL 57
A+I++ + +L AT YTVGD +GW G DY +W K F VGD+L
Sbjct: 14 AIINMALPSL------ATVYTVGDTSGWVIGG--DYSTWASDKTFAVGDSL 56
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1
Length = 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 23 ATTYTVGDNAGWTTQGKVDYYSWVDGKEFKVGDTLGESLKLRKNEKFY 70
AT + VGD+ GWTT DY W +F VGD SL N KF+
Sbjct: 1 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGD----SLLFNYNNKFH 44
>sp|P00302|STEL_TOXVR Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1
Length = 107
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 24 TTYTVGDNAGWTTQ--GKVDY-YSWVDGKEFKVGDTLGESLKLRKNEKFYLQNEKSKRNY 80
T YTVGD+AGW G VDY + W K F +GD L + + +F+ ++ +++NY
Sbjct: 1 TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDV----LVFKYDRRFHNVDKVTQKNY 56
>sp|Q39131|LAML_ARATH Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1
Length = 172
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 6 SAVISLTIMALFGASVAATTYTVGDNAGWTTQGKVDYYSWVDGKEFKVGDTL 57
+AV+ +MA V A YTVG+N W ++Y W GK F +GD L
Sbjct: 9 TAVVLAFLMAAPMPGVTAKKYTVGENKFWNPN--INYTIWAQGKHFYLGDWL 58
>sp|Q8LG89|BABL_ARATH Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=1 SV=2
Length = 129
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 AAAKSAVISLTIMALFGASVAATTYTVGDNAGWTTQGKVDYYSWVDGKEFKVGDTL 57
A A +++++++ L V A TYTVGD+ WT + W GK F+ GD L
Sbjct: 12 ARAIVTLMAVSVLLLQADYVQAATYTVGDSGIWT----FNAVGWPKGKHFRAGDVL 63
>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2
Length = 196
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 26 YTVGDNAGWTTQGKVDYYS-WVDGKEFKVGDTL 57
Y VGD+ WT ++Y+ W GK F+VGD L
Sbjct: 25 YDVGDDTEWTRPMDPEFYTTWATGKTFRVGDEL 57
>sp|P27955|POLG_HCVH7 Genome polyprotein (Fragment) OS=Hepatitis C virus (isolate HCT27)
PE=3 SV=1
Length = 309
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 11 LTIMALFGASVAATTYTVGDNAGWTTQGKVDYYS 44
L ++ LF A V ATTYT G NA TTQ ++S
Sbjct: 244 LVVLLLF-AGVDATTYTTGGNAARTTQALTSFFS 276
>sp|P58151|YCXC_ASTLO Uncharacterized 51.9 kDa protein in rps4-rps11 intergenic region
OS=Astasia longa PE=4 SV=1
Length = 426
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 41 DYYSWVDGK--EFKVGDTLGESLKLRKNEKFYLQNEKSKRNYL 81
D S+VD K F VGD ES+ K +KF NE +K YL
Sbjct: 181 DKLSYVDKKNISFSVGDGKSESVYRDKMDKFIFSNESNKSFYL 223
>sp|O80517|BCB2_ARATH Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1
Length = 202
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 23 ATTYTVGDNAGWTTQGKVDYYSWVDGKEFKVGDTL 57
A TYT+ WTT VDY W GK F+VGD L
Sbjct: 29 AVTYTIE----WTTG--VDYSGWATGKTFRVGDIL 57
>sp|P60496|BABL_LILLO Chemocyanin OS=Lilium longiflorum PE=1 SV=1
Length = 126
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 23 ATTYTVGDNAGWT--TQGKVDYYSWVDGKEFKVGDTL 57
+ YTVGD GWT T G W GK F+ GD L
Sbjct: 30 SVVYTVGDGGGWTFGTSG------WPAGKTFRAGDVL 60
>sp|P19811|RPOA_EAVBU Replicase polyprotein 1ab OS=Equine arteritis virus (strain Bucyrus)
GN=rep PE=1 SV=3
Length = 3175
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 26 YTVGDNAGWTTQGKVDYY--SWVDGKEFKVGDTLGESLKLRKNEKFYLQNEKSK 77
Y VG + T G Y+ WVDGK + D+L S + N + +L + K
Sbjct: 2903 YMVGQSVFVQTPGVTSYWLTEWVDGKARALPDSLFSSGRFETNSRAFLDEAEEK 2956
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520
PE=1 SV=1
Length = 349
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 9 ISLTIMALFGASVAATTYTVGDNAGWTTQGKVDYYSWVDGKEFKVGDTL 57
I L++ LF S A + VG + W T +Y SW F V DTL
Sbjct: 15 ILLSLSTLFTIS-NARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTL 62
>sp|P27956|POLG_HCVH8 Genome polyprotein (Fragment) OS=Hepatitis C virus (isolate HCT18)
PE=3 SV=1
Length = 321
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 11 LTIMALFGASVAATTYTVGDNAGWTTQGKVDYYS 44
L ++ LF A V A TYT G NAG T G V +++
Sbjct: 256 LVVLLLF-AGVDAETYTSGGNAGHTMTGIVRFFA 288
>sp|P00303|BABL_CUCSA Basic blue protein OS=Cucumis sativus PE=1 SV=1
Length = 96
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 25 TYTVGDNAGWTTQGKVDYYSWVDGKEFKVGDTL 57
Y VG + GWT + SW GK F+ GD L
Sbjct: 2 VYVVGGSGGWT----FNTESWPKGKRFRAGDIL 30
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,585,071
Number of Sequences: 539616
Number of extensions: 994686
Number of successful extensions: 2326
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2316
Number of HSP's gapped (non-prelim): 20
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)